Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344700 | XP_027365985.1 | 61.481 | 270 | 37 | 3 | 3 | 205 | 292 | 561 | 3.57e-96 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344700 | sp|Q0WP01|PTR9_ARATH | 44.981 | 269 | 75 | 4 | 4 | 205 | 294 | 556 | 2.33e-65 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344700 | A0A2K3P0B9 | 62.593 | 270 | 34 | 4 | 3 | 205 | 64 | 333 | 3.31e-96 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081700 | Msa0344700 | 0.806587 | 7.650193e-50 | -8.615850e-47 |
| Msa0089470 | Msa0344700 | 0.815545 | 8.749860e-52 | -8.615850e-47 |
| Msa0138340 | Msa0344700 | 0.811267 | 7.625771e-51 | -8.615850e-47 |
| Msa0147960 | Msa0344700 | 0.807162 | 5.782173e-50 | -8.615850e-47 |
| Msa0174060 | Msa0344700 | 0.812273 | 4.606773e-51 | -8.615850e-47 |
| Msa0178440 | Msa0344700 | 0.834902 | 2.291662e-56 | -8.615850e-47 |
| Msa0180100 | Msa0344700 | 0.817742 | 2.816033e-52 | -8.615850e-47 |
| Msa0184510 | Msa0344700 | 0.809369 | 1.958088e-50 | -8.615850e-47 |
| Msa0194750 | Msa0344700 | 0.802239 | 6.164844e-49 | -8.615850e-47 |
| Msa0209370 | Msa0344700 | 0.808697 | 2.726774e-50 | -8.615850e-47 |
| Msa0225070 | Msa0344700 | 0.812658 | 3.795800e-51 | -8.615850e-47 |
| Msa0229350 | Msa0344700 | 0.803813 | 2.914510e-49 | -8.615850e-47 |
| Msa0304060 | Msa0344700 | 0.802477 | 5.508321e-49 | -8.615850e-47 |
| Msa0344700 | Msa0367590 | 0.810904 | 9.140778e-51 | -8.615850e-47 |
| Msa0344700 | Msa0392030 | 0.873247 | 1.705254e-67 | -8.615850e-47 |
| Msa0344700 | Msa0491160 | 0.808413 | 3.134952e-50 | -8.615850e-47 |
| Msa0344700 | Msa0527210 | 0.809559 | 1.782393e-50 | -8.615850e-47 |
| Msa0344700 | Msa0538050 | 0.826134 | 3.203851e-54 | -8.615850e-47 |
| Msa0344700 | Msa0569980 | 0.804273 | 2.337588e-49 | -8.615850e-47 |
| Msa0344700 | Msa0582270 | 0.806123 | 9.584621e-50 | -8.615850e-47 |
| Msa0344700 | Msa0585720 | 0.817139 | 3.850595e-52 | -8.615850e-47 |
| Msa0344700 | Msa0612880 | 0.805444 | 1.331310e-49 | -8.615850e-47 |
| Msa0344700 | Msa0615430 | 0.805053 | 1.607060e-49 | -8.615850e-47 |
| Msa0344700 | Msa0625900 | 0.831734 | 1.411069e-55 | -8.615850e-47 |
| Msa0344700 | Msa0663580 | 0.803113 | 4.070777e-49 | -8.615850e-47 |
| Msa0344700 | Msa0663690 | 0.830429 | 2.951312e-55 | -8.615850e-47 |
| Msa0344700 | Msa0706130 | 0.801944 | 7.090323e-49 | -8.615850e-47 |
| Msa0344700 | Msa0802950 | 0.809485 | 1.848531e-50 | -8.615850e-47 |
| Msa0344700 | Msa0812020 | 0.805936 | 1.049174e-49 | -8.615850e-47 |
| Msa0344700 | Msa0967900 | 0.812570 | 3.967648e-51 | -8.615850e-47 |
| Msa0344700 | Msa1078600 | 0.801531 | 8.619018e-49 | -8.615850e-47 |
| Msa0344700 | Msa1144710 | 0.968572 | 7.202884e-129 | -8.615850e-47 |
| Msa0344700 | Msa1205270 | 0.823199 | 1.575220e-53 | -8.615850e-47 |
| Msa0344700 | Msa1209990 | 0.805009 | 1.641741e-49 | -8.615850e-47 |
| Msa0344700 | Msa1228600 | 0.819346 | 1.218677e-52 | -8.615850e-47 |
| Msa0344700 | Msa1297220 | 0.812921 | 3.322944e-51 | -8.615850e-47 |
| Msa0344700 | Msa1298480 | 0.804380 | 2.221228e-49 | -8.615850e-47 |
| Msa0344700 | Msa1323260 | 0.819379 | 1.197911e-52 | -8.615850e-47 |
| Msa0344700 | Msa1343450 | 0.828428 | 9.038850e-55 | -8.615850e-47 |
| Msa0344700 | Msa1371540 | 0.812311 | 4.520094e-51 | -8.615850e-47 |
| Msa0344700 | Msa1435950 | 0.820592 | 6.322671e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344700 | MtrunA17_Chr3g0077151 | 91.870 | 123 | 6 | 1 | 3 | 121 | 278 | 400 | 1.13e-68 | 219 |
| Msa0344700 | MtrunA17_Chr3g0077151 | 88.372 | 86 | 10 | 0 | 120 | 205 | 462 | 547 | 7.63e-44 | 153 |
| Msa0344700 | MtrunA17_Chr4g0014841 | 43.657 | 268 | 83 | 5 | 2 | 202 | 284 | 550 | 6.41e-59 | 193 |
| Msa0344700 | MtrunA17_Chr4g0014781 | 42.435 | 271 | 88 | 5 | 2 | 205 | 286 | 555 | 8.24e-57 | 188 |
| Msa0344700 | MtrunA17_Chr4g0014791 | 41.852 | 270 | 86 | 5 | 2 | 204 | 287 | 552 | 1.40e-55 | 184 |
| Msa0344700 | MtrunA17_Chr4g0014801 | 40.590 | 271 | 93 | 5 | 2 | 205 | 286 | 555 | 2.79e-54 | 181 |
| Msa0344700 | MtrunA17_Chr4g0014861 | 41.418 | 268 | 89 | 6 | 2 | 202 | 163 | 429 | 1.49e-53 | 177 |
| Msa0344700 | MtrunA17_Chr4g0014871 | 41.264 | 269 | 90 | 5 | 1 | 202 | 287 | 554 | 1.87e-53 | 179 |
| Msa0344700 | MtrunA17_Chr7g0241741 | 32.342 | 269 | 112 | 6 | 4 | 202 | 294 | 562 | 8.24e-37 | 134 |
| Msa0344700 | MtrunA17_Chr3g0112671 | 30.916 | 262 | 119 | 4 | 1 | 201 | 300 | 560 | 9.58e-37 | 134 |
| Msa0344700 | MtrunA17_Chr3g0104011 | 31.022 | 274 | 118 | 6 | 1 | 203 | 292 | 565 | 1.19e-36 | 134 |
| Msa0344700 | MtrunA17_Chr3g0114501 | 33.212 | 274 | 113 | 5 | 1 | 205 | 293 | 565 | 2.29e-36 | 133 |
| Msa0344700 | MtrunA17_Chr4g0005901 | 29.889 | 271 | 120 | 4 | 4 | 204 | 304 | 574 | 2.13e-35 | 130 |
| Msa0344700 | MtrunA17_Chr7g0240381 | 31.579 | 266 | 119 | 5 | 1 | 204 | 297 | 561 | 3.28e-35 | 130 |
| Msa0344700 | MtrunA17_Chr1g0166771 | 33.471 | 242 | 100 | 5 | 3 | 184 | 267 | 507 | 2.92e-33 | 124 |
| Msa0344700 | MtrunA17_Chr4g0008651 | 30.037 | 273 | 122 | 6 | 1 | 205 | 302 | 573 | 5.43e-32 | 121 |
| Msa0344700 | MtrunA17_Chr8g0375351 | 29.710 | 276 | 121 | 7 | 1 | 204 | 311 | 585 | 5.39e-31 | 118 |
| Msa0344700 | MtrunA17_Chr8g0375341 | 29.710 | 276 | 121 | 6 | 1 | 204 | 311 | 585 | 6.97e-31 | 118 |
| Msa0344700 | MtrunA17_Chr2g0276751 | 31.835 | 267 | 118 | 8 | 1 | 203 | 299 | 565 | 5.99e-30 | 115 |
| Msa0344700 | MtrunA17_Chr1g0187241 | 30.712 | 267 | 117 | 7 | 1 | 201 | 302 | 566 | 8.64e-30 | 115 |
| Msa0344700 | MtrunA17_Chr1g0166741 | 32.046 | 259 | 115 | 5 | 3 | 201 | 303 | 560 | 1.12e-29 | 115 |
| Msa0344700 | MtrunA17_Chr2g0284701 | 27.562 | 283 | 125 | 6 | 3 | 205 | 310 | 592 | 1.51e-28 | 112 |
| Msa0344700 | MtrunA17_Chr8g0353031 | 42.105 | 114 | 62 | 1 | 12 | 121 | 295 | 408 | 2.24e-28 | 111 |
| Msa0344700 | MtrunA17_Chr8g0375321 | 29.348 | 276 | 122 | 6 | 1 | 204 | 308 | 582 | 2.84e-28 | 110 |
| Msa0344700 | MtrunA17_Chr3g0082631 | 36.364 | 176 | 76 | 5 | 3 | 169 | 188 | 336 | 3.16e-28 | 110 |
| Msa0344700 | MtrunA17_Chr3g0082631 | 34.091 | 132 | 74 | 5 | 72 | 202 | 341 | 460 | 1.10e-13 | 68.9 |
| Msa0344700 | MtrunA17_Chr3g0112631 | 27.778 | 270 | 123 | 7 | 3 | 201 | 4 | 272 | 9.26e-28 | 106 |
| Msa0344700 | MtrunA17_Chr8g0375331 | 30.797 | 276 | 118 | 7 | 1 | 204 | 295 | 569 | 8.38e-27 | 106 |
| Msa0344700 | MtrunA17_Chr8g0375311 | 40.625 | 128 | 65 | 3 | 4 | 121 | 314 | 440 | 1.21e-26 | 106 |
| Msa0344700 | MtrunA17_Chr1g0166731 | 45.690 | 116 | 58 | 2 | 1 | 112 | 196 | 310 | 1.76e-26 | 105 |
| Msa0344700 | MtrunA17_Chr1g0166731 | 41.250 | 80 | 47 | 0 | 122 | 201 | 382 | 461 | 1.46e-14 | 71.6 |
| Msa0344700 | MtrunA17_Chr8g0375291 | 40.288 | 139 | 72 | 3 | 4 | 132 | 314 | 451 | 2.11e-26 | 105 |
| Msa0344700 | MtrunA17_Chr7g0261811 | 42.400 | 125 | 67 | 3 | 1 | 121 | 302 | 425 | 6.35e-26 | 104 |
| Msa0344700 | MtrunA17_Chr7g0261811 | 41.667 | 84 | 49 | 0 | 122 | 205 | 488 | 571 | 7.61e-13 | 66.6 |
| Msa0344700 | MtrunA17_Chr4g0056431 | 43.077 | 130 | 63 | 3 | 3 | 121 | 303 | 432 | 9.30e-26 | 103 |
| Msa0344700 | MtrunA17_Chr7g0261661 | 38.400 | 125 | 72 | 2 | 1 | 121 | 188 | 311 | 1.25e-25 | 103 |
| Msa0344700 | MtrunA17_Chr1g0166711 | 43.966 | 116 | 60 | 2 | 1 | 112 | 299 | 413 | 3.15e-25 | 102 |
| Msa0344700 | MtrunA17_Chr1g0166711 | 40.000 | 80 | 48 | 0 | 122 | 201 | 485 | 564 | 4.43e-14 | 70.1 |
| Msa0344700 | MtrunA17_Chr7g0218851 | 24.138 | 261 | 132 | 5 | 3 | 198 | 322 | 581 | 3.67e-25 | 102 |
| Msa0344700 | MtrunA17_Chr4g0063591 | 29.779 | 272 | 111 | 8 | 3 | 196 | 290 | 559 | 8.01e-25 | 101 |
| Msa0344700 | MtrunA17_Chr6g0451841 | 28.516 | 256 | 116 | 5 | 16 | 204 | 284 | 539 | 4.10e-24 | 99.0 |
| Msa0344700 | MtrunA17_Chr3g0142121 | 25.714 | 245 | 121 | 5 | 3 | 187 | 11 | 254 | 4.19e-24 | 96.3 |
| Msa0344700 | MtrunA17_Chr3g0112611 | 28.889 | 270 | 120 | 7 | 3 | 201 | 301 | 569 | 5.16e-24 | 99.0 |
| Msa0344700 | MtrunA17_Chr5g0399061 | 28.676 | 272 | 119 | 7 | 3 | 201 | 303 | 572 | 6.17e-24 | 98.6 |
| Msa0344700 | MtrunA17_Chr1g0166791 | 29.213 | 267 | 119 | 9 | 3 | 201 | 300 | 564 | 1.18e-23 | 97.8 |
| Msa0344700 | MtrunA17_Chr3g0142101 | 25.610 | 246 | 122 | 5 | 3 | 188 | 309 | 553 | 1.97e-23 | 97.4 |
| Msa0344700 | MtrunA17_Chr8g0375361 | 36.641 | 131 | 72 | 3 | 1 | 121 | 310 | 439 | 5.44e-23 | 95.9 |
| Msa0344700 | MtrunA17_Chr7g0261751 | 38.211 | 123 | 71 | 2 | 3 | 121 | 344 | 465 | 5.55e-23 | 95.9 |
| Msa0344700 | MtrunA17_Chr1g0177611 | 27.559 | 254 | 118 | 6 | 1 | 188 | 172 | 425 | 1.25e-22 | 94.4 |
| Msa0344700 | MtrunA17_Chr7g0261881 | 35.200 | 125 | 76 | 2 | 1 | 121 | 302 | 425 | 1.45e-22 | 94.7 |
| Msa0344700 | MtrunA17_Chr7g0261881 | 38.095 | 84 | 52 | 0 | 122 | 205 | 488 | 571 | 2.70e-12 | 65.1 |
| Msa0344700 | MtrunA17_Chr7g0261771 | 36.800 | 125 | 74 | 2 | 1 | 121 | 306 | 429 | 1.81e-22 | 94.4 |
| Msa0344700 | MtrunA17_Chr7g0261771 | 37.500 | 80 | 50 | 0 | 122 | 201 | 492 | 571 | 2.24e-11 | 62.4 |
| Msa0344700 | MtrunA17_Chr1g0177591 | 27.559 | 254 | 118 | 6 | 1 | 188 | 301 | 554 | 3.19e-22 | 93.6 |
| Msa0344700 | MtrunA17_Chr8g0379971 | 40.769 | 130 | 65 | 3 | 3 | 120 | 314 | 443 | 6.01e-22 | 92.8 |
| Msa0344700 | MtrunA17_Chr7g0261791 | 39.024 | 123 | 70 | 2 | 3 | 121 | 307 | 428 | 1.92e-21 | 91.7 |
| Msa0344700 | MtrunA17_Chr7g0261791 | 36.250 | 80 | 51 | 0 | 122 | 201 | 491 | 570 | 7.60e-12 | 63.5 |
| Msa0344700 | MtrunA17_Chr7g0214461 | 23.282 | 262 | 133 | 7 | 3 | 198 | 352 | 611 | 8.31e-21 | 89.7 |
| Msa0344700 | MtrunA17_Chr3g0142091 | 26.613 | 248 | 117 | 8 | 3 | 188 | 302 | 546 | 1.83e-20 | 88.6 |
| Msa0344700 | MtrunA17_Chr7g0217461 | 40.385 | 104 | 57 | 2 | 22 | 121 | 324 | 426 | 5.63e-20 | 87.4 |
| Msa0344700 | MtrunA17_Chr1g0213711 | 24.125 | 257 | 129 | 5 | 7 | 198 | 299 | 554 | 7.43e-20 | 87.0 |
| Msa0344700 | MtrunA17_Chr5g0415961 | 35.200 | 125 | 75 | 2 | 1 | 121 | 310 | 432 | 1.85e-19 | 85.9 |
| Msa0344700 | MtrunA17_Chr5g0399071 | 38.760 | 129 | 68 | 4 | 3 | 121 | 302 | 429 | 1.90e-19 | 85.9 |
| Msa0344700 | MtrunA17_Chr8g0362801 | 37.209 | 129 | 70 | 3 | 4 | 121 | 193 | 321 | 2.13e-19 | 85.5 |
| Msa0344700 | MtrunA17_Chr4g0003761 | 36.434 | 129 | 71 | 3 | 3 | 120 | 300 | 428 | 2.17e-19 | 85.5 |
| Msa0344700 | MtrunA17_Chr1g0177631 | 26.316 | 266 | 128 | 7 | 1 | 200 | 172 | 435 | 2.17e-19 | 85.5 |
| Msa0344700 | MtrunA17_Chr5g0400371 | 27.037 | 270 | 122 | 8 | 3 | 198 | 387 | 655 | 2.49e-19 | 85.5 |
| Msa0344700 | MtrunA17_Chr8g0379991 | 43.396 | 106 | 56 | 1 | 19 | 120 | 311 | 416 | 2.53e-19 | 85.5 |
| Msa0344700 | MtrunA17_Chr4g0059991 | 33.333 | 132 | 75 | 3 | 3 | 121 | 297 | 428 | 2.68e-19 | 85.5 |
| Msa0344700 | MtrunA17_Chr8g0390331 | 34.646 | 127 | 70 | 3 | 3 | 117 | 284 | 409 | 2.88e-19 | 85.1 |
| Msa0344700 | MtrunA17_Chr8g0362711 | 40.000 | 125 | 64 | 4 | 1 | 121 | 310 | 427 | 4.17e-19 | 84.7 |
| Msa0344700 | MtrunA17_Chr5g0439381 | 27.376 | 263 | 121 | 9 | 4 | 201 | 299 | 556 | 5.77e-19 | 84.3 |
| Msa0344700 | MtrunA17_Chr1g0147631 | 31.783 | 129 | 78 | 2 | 1 | 119 | 294 | 422 | 7.77e-19 | 84.0 |
| Msa0344700 | MtrunA17_Chr7g0255601 | 34.783 | 115 | 71 | 1 | 11 | 121 | 316 | 430 | 1.27e-18 | 83.6 |
| Msa0344700 | MtrunA17_Chr2g0331521 | 37.778 | 135 | 72 | 3 | 1 | 123 | 291 | 425 | 1.48e-18 | 83.2 |
| Msa0344700 | MtrunA17_Chr4g0059971 | 37.383 | 107 | 62 | 2 | 20 | 121 | 333 | 439 | 1.51e-18 | 83.2 |
| Msa0344700 | MtrunA17_Chr4g0011471 | 26.937 | 271 | 124 | 8 | 1 | 198 | 287 | 556 | 1.69e-18 | 83.2 |
| Msa0344700 | MtrunA17_Chr7g0271221 | 27.925 | 265 | 126 | 8 | 1 | 201 | 283 | 546 | 1.71e-18 | 83.2 |
| Msa0344700 | MtrunA17_Chr4g0060071 | 40.164 | 122 | 65 | 3 | 4 | 121 | 38 | 155 | 1.83e-18 | 81.6 |
| Msa0344700 | MtrunA17_Chr5g0422881 | 32.558 | 129 | 79 | 2 | 1 | 121 | 292 | 420 | 3.69e-18 | 82.0 |
| Msa0344700 | MtrunA17_Chr3g0133341 | 38.525 | 122 | 69 | 3 | 3 | 120 | 292 | 411 | 3.86e-18 | 82.0 |
| Msa0344700 | MtrunA17_Chr5g0415791 | 38.318 | 107 | 62 | 1 | 19 | 121 | 331 | 437 | 3.91e-18 | 82.0 |
| Msa0344700 | MtrunA17_Chr1g0193391 | 26.692 | 266 | 129 | 8 | 1 | 201 | 282 | 546 | 3.94e-18 | 82.0 |
| Msa0344700 | MtrunA17_Chr2g0331511 | 35.878 | 131 | 73 | 3 | 1 | 120 | 291 | 421 | 5.02e-18 | 81.6 |
| Msa0344700 | MtrunA17_Chr5g0415841 | 34.109 | 129 | 74 | 3 | 4 | 121 | 191 | 319 | 5.70e-18 | 81.3 |
| Msa0344700 | MtrunA17_Chr4g0059981 | 34.091 | 132 | 74 | 4 | 3 | 121 | 305 | 436 | 6.18e-18 | 81.3 |
| Msa0344700 | MtrunA17_Chr4g0054891 | 25.100 | 251 | 121 | 7 | 9 | 193 | 399 | 648 | 7.69e-18 | 81.3 |
| Msa0344700 | MtrunA17_Chr7g0255611 | 24.096 | 249 | 115 | 7 | 19 | 195 | 326 | 572 | 9.75e-18 | 80.9 |
| Msa0344700 | MtrunA17_Chr7g0261831 | 37.143 | 105 | 61 | 2 | 1 | 101 | 46 | 149 | 1.86e-17 | 77.4 |
| Msa0344700 | MtrunA17_Chr7g0261851 | 38.525 | 122 | 70 | 2 | 4 | 121 | 306 | 426 | 2.26e-17 | 79.7 |
| Msa0344700 | MtrunA17_Chr7g0261851 | 38.750 | 80 | 49 | 0 | 122 | 201 | 489 | 568 | 5.34e-12 | 63.9 |
| Msa0344700 | MtrunA17_Chr4g0069581 | 25.703 | 249 | 121 | 6 | 17 | 202 | 271 | 518 | 3.85e-17 | 79.0 |
| Msa0344700 | MtrunA17_Chr2g0331461 | 36.090 | 133 | 72 | 4 | 1 | 120 | 293 | 425 | 1.03e-16 | 77.8 |
| Msa0344700 | MtrunA17_Chr7g0255621 | 33.645 | 107 | 67 | 1 | 19 | 121 | 317 | 423 | 6.27e-16 | 75.5 |
| Msa0344700 | MtrunA17_Chr1g0157611 | 30.469 | 128 | 77 | 2 | 3 | 118 | 284 | 411 | 1.49e-15 | 74.3 |
| Msa0344700 | MtrunA17_Chr2g0331481 | 35.338 | 133 | 73 | 4 | 1 | 120 | 293 | 425 | 1.67e-15 | 74.3 |
| Msa0344700 | MtrunA17_Chr2g0331471 | 35.338 | 133 | 73 | 4 | 1 | 120 | 356 | 488 | 1.91e-15 | 74.3 |
| Msa0344700 | MtrunA17_Chr7g0240151 | 26.230 | 244 | 128 | 7 | 5 | 199 | 199 | 439 | 2.14e-15 | 73.9 |
| Msa0344700 | MtrunA17_Chr1g0157601 | 29.688 | 128 | 78 | 2 | 3 | 118 | 283 | 410 | 2.62e-15 | 73.6 |
| Msa0344700 | MtrunA17_Chr1g0157621 | 29.921 | 127 | 78 | 3 | 3 | 118 | 248 | 374 | 3.40e-15 | 73.6 |
| Msa0344700 | MtrunA17_Chr8g0362781 | 33.636 | 110 | 66 | 2 | 14 | 116 | 327 | 436 | 3.48e-14 | 70.5 |
| Msa0344700 | MtrunA17_Chr7g0240181 | 33.607 | 122 | 76 | 2 | 5 | 121 | 199 | 320 | 4.79e-14 | 70.1 |
| Msa0344700 | MtrunA17_Chr7g0240211 | 33.607 | 122 | 76 | 2 | 5 | 121 | 199 | 320 | 4.84e-14 | 70.1 |
| Msa0344700 | MtrunA17_Chr7g0235521 | 32.787 | 122 | 77 | 2 | 5 | 121 | 199 | 320 | 5.27e-14 | 69.7 |
| Msa0344700 | MtrunA17_Chr7g0240131 | 33.607 | 122 | 76 | 2 | 5 | 121 | 199 | 320 | 5.27e-14 | 69.7 |
| Msa0344700 | MtrunA17_Chr7g0240271 | 32.787 | 122 | 77 | 2 | 5 | 121 | 310 | 431 | 1.28e-13 | 68.9 |
| Msa0344700 | MtrunA17_Chr2g0325961 | 32.000 | 125 | 77 | 3 | 3 | 121 | 298 | 420 | 3.24e-13 | 67.8 |
| Msa0344700 | MtrunA17_Chr4g0060001 | 24.615 | 260 | 128 | 7 | 4 | 199 | 315 | 570 | 1.62e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344700 | AT1G22540.1 | 44.981 | 269 | 75 | 4 | 4 | 205 | 294 | 556 | 2.37e-66 | 213 |
| Msa0344700 | AT1G72130.2 | 41.065 | 263 | 85 | 4 | 3 | 205 | 167 | 419 | 8.22e-58 | 187 |
| Msa0344700 | AT1G72130.3 | 41.065 | 263 | 85 | 4 | 3 | 205 | 167 | 419 | 8.22e-58 | 187 |
| Msa0344700 | AT1G72130.1 | 41.065 | 263 | 85 | 4 | 3 | 205 | 285 | 537 | 8.43e-57 | 188 |
| Msa0344700 | AT1G72140.1 | 40.602 | 266 | 81 | 4 | 3 | 201 | 297 | 552 | 4.65e-51 | 173 |
| Msa0344700 | AT1G22550.1 | 37.175 | 269 | 99 | 6 | 1 | 202 | 295 | 560 | 2.02e-45 | 158 |
| Msa0344700 | AT1G72120.1 | 40.824 | 267 | 91 | 7 | 3 | 202 | 287 | 553 | 5.10e-40 | 143 |
| Msa0344700 | AT1G72125.1 | 51.613 | 124 | 56 | 1 | 1 | 120 | 289 | 412 | 2.50e-37 | 136 |
| Msa0344700 | AT1G72125.1 | 55.422 | 83 | 37 | 0 | 120 | 202 | 475 | 557 | 3.83e-18 | 82.4 |
| Msa0344700 | AT5G01180.2 | 31.522 | 276 | 116 | 7 | 1 | 204 | 292 | 566 | 4.82e-35 | 130 |
| Msa0344700 | AT5G01180.3 | 31.522 | 276 | 116 | 7 | 1 | 204 | 292 | 566 | 4.82e-35 | 130 |
| Msa0344700 | AT5G01180.1 | 31.522 | 276 | 116 | 7 | 1 | 204 | 292 | 566 | 4.82e-35 | 130 |
| Msa0344700 | AT1G22570.2 | 38.290 | 269 | 92 | 9 | 1 | 202 | 263 | 524 | 1.28e-34 | 128 |
| Msa0344700 | AT5G46050.2 | 32.353 | 272 | 115 | 6 | 1 | 205 | 187 | 456 | 1.40e-34 | 127 |
| Msa0344700 | AT1G22570.1 | 38.290 | 269 | 92 | 9 | 1 | 202 | 300 | 561 | 2.41e-34 | 128 |
| Msa0344700 | AT5G46050.1 | 32.353 | 272 | 115 | 6 | 1 | 205 | 299 | 568 | 4.71e-34 | 127 |
| Msa0344700 | AT2G40460.1 | 32.707 | 266 | 107 | 5 | 3 | 201 | 295 | 555 | 1.35e-33 | 126 |
| Msa0344700 | AT1G62200.1 | 29.545 | 264 | 121 | 6 | 3 | 202 | 326 | 588 | 2.78e-32 | 122 |
| Msa0344700 | AT1G62200.2 | 29.545 | 264 | 121 | 6 | 3 | 202 | 355 | 617 | 3.46e-32 | 122 |
| Msa0344700 | AT1G62200.3 | 29.545 | 264 | 121 | 6 | 3 | 202 | 369 | 631 | 4.86e-32 | 122 |
| Msa0344700 | AT3G54140.1 | 29.304 | 273 | 122 | 6 | 1 | 202 | 292 | 564 | 2.25e-31 | 120 |
| Msa0344700 | AT3G54140.2 | 29.304 | 273 | 122 | 6 | 1 | 202 | 292 | 564 | 2.25e-31 | 120 |
| Msa0344700 | AT5G14940.1 | 34.874 | 238 | 88 | 7 | 16 | 186 | 289 | 526 | 1.28e-30 | 117 |
| Msa0344700 | AT3G54450.1 | 28.413 | 271 | 122 | 8 | 3 | 202 | 274 | 543 | 1.47e-30 | 117 |
| Msa0344700 | AT1G69870.1 | 28.996 | 269 | 120 | 6 | 4 | 201 | 326 | 594 | 2.10e-29 | 114 |
| Msa0344700 | AT3G21670.1 | 30.451 | 266 | 112 | 6 | 4 | 201 | 298 | 558 | 2.49e-28 | 111 |
| Msa0344700 | AT3G53960.1 | 29.304 | 273 | 120 | 8 | 1 | 201 | 302 | 573 | 5.44e-28 | 110 |
| Msa0344700 | AT1G33440.1 | 27.239 | 268 | 130 | 6 | 3 | 205 | 307 | 574 | 8.20e-27 | 107 |
| Msa0344700 | AT1G18880.1 | 26.619 | 278 | 125 | 7 | 3 | 201 | 289 | 566 | 4.41e-26 | 105 |
| Msa0344700 | AT2G37900.2 | 27.170 | 265 | 128 | 5 | 1 | 201 | 224 | 487 | 1.46e-25 | 103 |
| Msa0344700 | AT2G02040.1 | 26.449 | 276 | 130 | 6 | 2 | 205 | 311 | 585 | 1.76e-25 | 103 |
| Msa0344700 | AT2G37900.1 | 27.170 | 265 | 128 | 5 | 1 | 201 | 303 | 566 | 1.81e-25 | 103 |
| Msa0344700 | AT1G59740.1 | 27.799 | 259 | 121 | 7 | 3 | 196 | 315 | 572 | 2.38e-25 | 103 |
| Msa0344700 | AT5G46040.1 | 40.833 | 120 | 66 | 2 | 1 | 116 | 299 | 417 | 4.98e-25 | 102 |
| Msa0344700 | AT2G02020.1 | 41.228 | 114 | 62 | 2 | 12 | 121 | 291 | 403 | 3.55e-23 | 96.7 |
| Msa0344700 | AT1G27080.2 | 26.038 | 265 | 133 | 6 | 3 | 204 | 245 | 509 | 7.60e-23 | 95.9 |
| Msa0344700 | AT1G27080.1 | 26.038 | 265 | 133 | 6 | 3 | 204 | 287 | 551 | 8.24e-23 | 95.9 |
| Msa0344700 | AT3G01350.1 | 41.584 | 101 | 55 | 1 | 24 | 120 | 305 | 405 | 4.10e-22 | 94.0 |
| Msa0344700 | AT3G01350.1 | 35.000 | 120 | 67 | 4 | 78 | 196 | 437 | 546 | 9.22e-11 | 60.8 |
| Msa0344700 | AT2G26690.3 | 30.970 | 268 | 106 | 9 | 3 | 193 | 245 | 510 | 7.75e-22 | 92.8 |
| Msa0344700 | AT2G26690.1 | 30.970 | 268 | 106 | 9 | 3 | 193 | 290 | 555 | 7.95e-22 | 93.2 |
| Msa0344700 | AT2G26690.2 | 30.970 | 268 | 106 | 9 | 3 | 193 | 257 | 522 | 8.06e-22 | 92.8 |
| Msa0344700 | AT5G19640.1 | 24.314 | 255 | 133 | 8 | 3 | 198 | 328 | 581 | 8.57e-20 | 87.0 |
| Msa0344700 | AT5G62680.1 | 36.641 | 131 | 70 | 3 | 3 | 120 | 315 | 445 | 3.49e-18 | 82.4 |
| Msa0344700 | AT1G32450.1 | 37.037 | 108 | 62 | 3 | 19 | 121 | 337 | 443 | 1.13e-17 | 80.9 |
| Msa0344700 | AT3G47960.1 | 34.848 | 132 | 73 | 3 | 3 | 121 | 331 | 462 | 4.52e-17 | 79.3 |
| Msa0344700 | AT1G52190.1 | 30.370 | 135 | 79 | 3 | 1 | 120 | 291 | 425 | 5.00e-17 | 79.3 |
| Msa0344700 | AT1G69850.1 | 33.858 | 127 | 74 | 3 | 4 | 121 | 311 | 436 | 8.76e-17 | 78.6 |
| Msa0344700 | AT3G45700.1 | 26.054 | 261 | 123 | 7 | 3 | 202 | 282 | 533 | 1.49e-16 | 77.8 |
| Msa0344700 | AT1G27040.1 | 37.143 | 105 | 61 | 2 | 21 | 121 | 316 | 419 | 5.42e-16 | 76.3 |
| Msa0344700 | AT1G27040.2 | 37.143 | 105 | 61 | 2 | 21 | 121 | 312 | 415 | 5.51e-16 | 76.3 |
| Msa0344700 | AT1G68570.2 | 31.818 | 132 | 79 | 2 | 1 | 121 | 263 | 394 | 5.57e-16 | 76.3 |
| Msa0344700 | AT1G68570.1 | 31.818 | 132 | 79 | 2 | 1 | 121 | 293 | 424 | 6.11e-16 | 75.9 |
| Msa0344700 | AT1G27040.3 | 37.143 | 105 | 61 | 2 | 21 | 121 | 284 | 387 | 6.48e-16 | 75.9 |
| Msa0344700 | AT3G45710.1 | 35.115 | 131 | 71 | 3 | 3 | 121 | 287 | 415 | 7.60e-16 | 75.9 |
| Msa0344700 | AT3G45650.1 | 37.500 | 112 | 62 | 3 | 15 | 121 | 299 | 407 | 1.99e-15 | 74.3 |
| Msa0344700 | AT3G45650.2 | 37.500 | 112 | 62 | 3 | 15 | 121 | 299 | 407 | 2.02e-15 | 74.3 |
| Msa0344700 | AT5G11570.1 | 25.714 | 245 | 125 | 6 | 11 | 198 | 232 | 476 | 2.04e-15 | 74.3 |
| Msa0344700 | AT1G12110.1 | 36.697 | 109 | 64 | 2 | 16 | 120 | 323 | 430 | 6.05e-15 | 73.2 |
| Msa0344700 | AT3G16180.1 | 27.612 | 134 | 83 | 3 | 1 | 120 | 292 | 425 | 1.03e-14 | 72.4 |
| Msa0344700 | AT3G45660.2 | 34.351 | 131 | 71 | 5 | 3 | 121 | 300 | 427 | 7.20e-14 | 70.1 |
| Msa0344700 | AT4G21680.1 | 32.258 | 124 | 76 | 5 | 5 | 121 | 309 | 431 | 7.24e-14 | 70.1 |
| Msa0344700 | AT3G45660.1 | 34.351 | 131 | 71 | 5 | 3 | 121 | 279 | 406 | 7.61e-14 | 69.7 |
| Msa0344700 | AT3G45660.3 | 34.351 | 131 | 71 | 5 | 3 | 121 | 279 | 406 | 7.61e-14 | 69.7 |
| Msa0344700 | AT3G45690.1 | 25.893 | 224 | 124 | 9 | 3 | 194 | 283 | 496 | 1.68e-13 | 68.9 |
| Msa0344700 | AT5G62730.1 | 32.381 | 105 | 66 | 2 | 21 | 121 | 334 | 437 | 6.81e-13 | 67.0 |
| Msa0344700 | AT5G13400.1 | 33.333 | 117 | 67 | 3 | 15 | 121 | 352 | 467 | 7.75e-13 | 67.0 |
| Msa0344700 | AT5G62730.2 | 32.381 | 105 | 66 | 2 | 21 | 121 | 275 | 378 | 7.89e-13 | 67.0 |
| Msa0344700 | AT5G28470.2 | 26.119 | 134 | 86 | 3 | 1 | 121 | 285 | 418 | 1.96e-12 | 65.9 |
| Msa0344700 | AT2G02020.2 | 43.056 | 72 | 40 | 1 | 50 | 121 | 312 | 382 | 5.23e-12 | 64.3 |
| Msa0344700 | AT3G45720.1 | 31.298 | 131 | 76 | 4 | 3 | 121 | 284 | 412 | 2.33e-11 | 62.8 |
| Msa0344700 | AT1G69860.1 | 24.060 | 266 | 137 | 7 | 3 | 205 | 290 | 553 | 7.67e-11 | 61.2 |
Find 40 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTATTTGTATGCTCTTC+TGG | 0.194541 | 3_1:-3475817 | Msa0344700:CDS |
| TCCTCAGGCTTGTTCCATTA+TGG | 0.216674 | 3_1:-3476261 | Msa0344700:CDS |
| CTCATCTCTGCTATTCAAAA+AGG | 0.226888 | 3_1:-3475897 | Msa0344700:CDS |
| CCTCAGGCTTGTTCCATTAT+GGG | 0.292659 | 3_1:-3476260 | Msa0344700:CDS |
| CCTATAGCAAGAACCTTTAC+TGG | 0.312946 | 3_1:-3476061 | Msa0344700:CDS |
| CCAGTAAAGGTTCTTGCTAT+AGG | 0.317722 | 3_1:+3476061 | None:intergenic |
| TGGTGGAATTATCCGCCTTC+TGG | 0.334355 | 3_1:-3475782 | Msa0344700:CDS |
| ATTAAACTCGTAGCCCATAA+TGG | 0.391522 | 3_1:+3476247 | None:intergenic |
| AACACCTTGTTTGGTATAGA+AGG | 0.395111 | 3_1:+3476195 | None:intergenic |
| GTCCAACGTAACACCTTGTT+TGG | 0.415108 | 3_1:+3476186 | None:intergenic |
| CCCACACTTCTTAATTCATC+CGG | 0.418299 | 3_1:+3475972 | None:intergenic |
| AACAATAGAGAGACTGATAA+AGG | 0.421472 | 3_1:+3476117 | None:intergenic |
| ACCTTTACTGGCAAACCATC+TGG | 0.431974 | 3_1:-3476049 | Msa0344700:CDS |
| ATCAAACGGATCAAAGGAAA+AGG | 0.457585 | 3_1:-3476326 | Msa0344700:CDS |
| ATAAAGGATTGAAGAGAAGC+AGG | 0.477356 | 3_1:+3476133 | None:intergenic |
| GCCAGATGGTTTGCCAGTAA+AGG | 0.478082 | 3_1:+3476048 | None:intergenic |
| TTGCTATAGGAACGATAATA+CGG | 0.495632 | 3_1:+3476074 | None:intergenic |
| TCAAACGGATCAAAGGAAAA+GGG | 0.500687 | 3_1:-3476325 | Msa0344700:CDS |
| AAAGCATTAATTGCATCAAA+CGG | 0.521812 | 3_1:-3476340 | Msa0344700:CDS |
| AACAAGGTGTTACGTTGGAC+AGG | 0.536170 | 3_1:-3476183 | Msa0344700:CDS |
| ACGATAATACGGTCATAGAC+AGG | 0.551744 | 3_1:+3476085 | None:intergenic |
| GTATAGATGGGCGTGATGGA+TGG | 0.551872 | 3_1:-3475869 | Msa0344700:CDS |
| AATTGCATCAAACGGATCAA+AGG | 0.558504 | 3_1:-3476332 | Msa0344700:CDS |
| CCCGGATGAATTAAGAAGTG+TGG | 0.560345 | 3_1:-3475973 | Msa0344700:CDS |
| CTCTGAAGTTGAAGAAGCAA+AGG | 0.560670 | 3_1:-3476287 | Msa0344700:CDS |
| AAGAAGCAAAGGCAATCCTC+AGG | 0.570803 | 3_1:-3476276 | Msa0344700:CDS |
| TAAAGGATTGAAGAGAAGCA+GGG | 0.588599 | 3_1:+3476134 | None:intergenic |
| AAAGGATTGAAGAGAAGCAG+GGG | 0.591006 | 3_1:+3476135 | None:intergenic |
| ACAAGTATAGATGGGCGTGA+TGG | 0.597206 | 3_1:-3475873 | Msa0344700:CDS |
| CCACACTTCTTAATTCATCC+GGG | 0.597995 | 3_1:+3475973 | None:intergenic |
| CCGGATGAATTAAGAAGTGT+GGG | 0.606569 | 3_1:-3475972 | Msa0344700:CDS |
| TCTGGCTGCTCTTAGCGTGG+TGG | 0.628487 | 3_1:-3475799 | Msa0344700:CDS |
| TGTAGCATAGTGATGCCAGA+TGG | 0.630895 | 3_1:+3476034 | None:intergenic |
| CAAACGGATCAAAGGAAAAG+GGG | 0.634950 | 3_1:-3476324 | Msa0344700:CDS |
| TCTACCTTCTATACCAAACA+AGG | 0.638858 | 3_1:-3476199 | Msa0344700:CDS |
| TACCAAACAAGGTGTTACGT+TGG | 0.646717 | 3_1:-3476188 | Msa0344700:CDS |
| TCTTCTGGCTGCTCTTAGCG+TGG | 0.662427 | 3_1:-3475802 | Msa0344700:CDS |
| CCCATAATGGAACAAGCCTG+AGG | 0.694855 | 3_1:+3476260 | None:intergenic |
| ATGCTACAGAGAATTGAACT+CGG | 0.697035 | 3_1:-3476019 | Msa0344700:CDS |
| AAGGATTGAAGAGAAGCAGG+GGG | 0.729188 | 3_1:+3476136 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTAAAAATAGATTT+TGG | + | chr3_1:3476176-3476195 | None:intergenic | 10.0% |
| !! | TTTAAAAAAGTTATAAGAAA+CGG | - | chr3_1:3476185-3476204 | Msa0344700:CDS | 10.0% |
| !! | AGAAATTGTATAATTTATTT+AGG | + | chr3_1:3476513-3476532 | None:intergenic | 10.0% |
| !!! | ACTTTTTTAAAAATAGATTT+TGG | + | chr3_1:3476176-3476195 | None:intergenic | 10.0% |
| !! | TTTAAAAAAGTTATAAGAAA+CGG | - | chr3_1:3476185-3476204 | Msa0344700:CDS | 10.0% |
| !! | AGAAATTGTATAATTTATTT+AGG | + | chr3_1:3476513-3476532 | None:intergenic | 10.0% |
| !! | TTAAAAAAGTTATAAGAAAC+GGG | - | chr3_1:3476186-3476205 | Msa0344700:CDS | 15.0% |
| !! | TTAAAAAAGTTATAAGAAAC+GGG | - | chr3_1:3476186-3476205 | Msa0344700:CDS | 15.0% |
| !! | AAATGGTGAAATGAAATATA+GGG | - | chr3_1:3475800-3475819 | Msa0344700:CDS | 20.0% |
| !! | TAAAAAAGTTATAAGAAACG+GGG | - | chr3_1:3476187-3476206 | Msa0344700:CDS | 20.0% |
| !! | TGTAGAAAGAAAGAAAAAAA+TGG | - | chr3_1:3476291-3476310 | Msa0344700:CDS | 20.0% |
| !! | AAACATAAACTATTCTAACA+TGG | + | chr3_1:3476374-3476393 | None:intergenic | 20.0% |
| !! | TATATTCTTGCATTTGTATT+GGG | - | chr3_1:3476566-3476585 | Msa0344700:intron | 20.0% |
| !! | AAATGGTGAAATGAAATATA+GGG | - | chr3_1:3475800-3475819 | Msa0344700:CDS | 20.0% |
| !! | TAAAAAAGTTATAAGAAACG+GGG | - | chr3_1:3476187-3476206 | Msa0344700:CDS | 20.0% |
| !! | TGTAGAAAGAAAGAAAAAAA+TGG | - | chr3_1:3476291-3476310 | Msa0344700:CDS | 20.0% |
| !! | AAACATAAACTATTCTAACA+TGG | + | chr3_1:3476374-3476393 | None:intergenic | 20.0% |
| !! | TATATTCTTGCATTTGTATT+GGG | - | chr3_1:3476566-3476585 | Msa0344700:intron | 20.0% |
| ! | GAAATGGTGAAATGAAATAT+AGG | - | chr3_1:3475799-3475818 | Msa0344700:CDS | 25.0% |
| !! | TGAAATGAAATATAGGGTTT+TGG | - | chr3_1:3475806-3475825 | Msa0344700:CDS | 25.0% |
| !! | GAAATGAAATATAGGGTTTT+GGG | - | chr3_1:3475807-3475826 | Msa0344700:CDS | 25.0% |
| ! | AGCAATTAGCAATTAAAAAC+TGG | - | chr3_1:3475862-3475881 | Msa0344700:CDS | 25.0% |
| ! | ATTAGCAATTAAAAACTGGA+CGG | - | chr3_1:3475866-3475885 | Msa0344700:CDS | 25.0% |
| ! | GCAATTAACATCATGTAATA+AGG | - | chr3_1:3475902-3475921 | Msa0344700:CDS | 25.0% |
| ! | GTCATTCTAAGTATTTGATT+TGG | + | chr3_1:3476059-3476078 | None:intergenic | 25.0% |
| ! | AAAAAAGTTATAAGAAACGG+GGG | - | chr3_1:3476188-3476207 | Msa0344700:CDS | 25.0% |
| !!! | TTTGTTTTGGCCTAATTAAA+TGG | - | chr3_1:3476246-3476265 | Msa0344700:CDS | 25.0% |
| ! | AGAAGGAAATCCATTTAATT+AGG | + | chr3_1:3476259-3476278 | None:intergenic | 25.0% |
| !! | AATTAAATGGATTTCCTTCT+CGG | - | chr3_1:3476259-3476278 | Msa0344700:CDS | 25.0% |
| !! | TTTTCTTTCTTTCTACAACT+CGG | + | chr3_1:3476288-3476307 | None:intergenic | 25.0% |
| ! | TATAACTTGATATGACTACT+AGG | + | chr3_1:3476327-3476346 | None:intergenic | 25.0% |
| ! | AGAAAAGTTCAATTCTAACA+TGG | + | chr3_1:3476398-3476417 | None:intergenic | 25.0% |
| ! | AATCTCATATATCGTGAATA+TGG | + | chr3_1:3476537-3476556 | None:intergenic | 25.0% |
| ! | GTATATTCTTGCATTTGTAT+TGG | - | chr3_1:3476565-3476584 | Msa0344700:intron | 25.0% |
| ! | ATATTCTTGCATTTGTATTG+GGG | - | chr3_1:3476567-3476586 | Msa0344700:intron | 25.0% |
| !! | AAAGCATTAATTGCATCAAA+CGG | - | chr3_1:3476637-3476656 | Msa0344700:intron | 25.0% |
| !! | TCCCTCTATTTAAGTATTTT+TGG | - | chr3_1:3477032-3477051 | Msa0344700:intron | 25.0% |
| ! | CCCAAAAATACTTAAATAGA+GGG | + | chr3_1:3477036-3477055 | None:intergenic | 25.0% |
| !! | CCCTCTATTTAAGTATTTTT+GGG | - | chr3_1:3477033-3477052 | Msa0344700:intron | 25.0% |
| !!! | CCTCTATTTAAGTATTTTTG+GGG | - | chr3_1:3477034-3477053 | Msa0344700:intron | 25.0% |
| !!! | TATTTAAGTATTTTTGGGGT+TGG | - | chr3_1:3477038-3477057 | Msa0344700:intron | 25.0% |
| !!! | ATTTAAGTATTTTTGGGGTT+GGG | - | chr3_1:3477039-3477058 | Msa0344700:intron | 25.0% |
| ! | AAAAAGGAACAAGTATAGAT+GGG | - | chr3_1:3477096-3477115 | Msa0344700:intron | 25.0% |
| ! | GAAATGGTGAAATGAAATAT+AGG | - | chr3_1:3475799-3475818 | Msa0344700:CDS | 25.0% |
| !! | TGAAATGAAATATAGGGTTT+TGG | - | chr3_1:3475806-3475825 | Msa0344700:CDS | 25.0% |
| !! | GAAATGAAATATAGGGTTTT+GGG | - | chr3_1:3475807-3475826 | Msa0344700:CDS | 25.0% |
| ! | AGCAATTAGCAATTAAAAAC+TGG | - | chr3_1:3475862-3475881 | Msa0344700:CDS | 25.0% |
| ! | ATTAGCAATTAAAAACTGGA+CGG | - | chr3_1:3475866-3475885 | Msa0344700:CDS | 25.0% |
| ! | GCAATTAACATCATGTAATA+AGG | - | chr3_1:3475902-3475921 | Msa0344700:CDS | 25.0% |
| ! | GTCATTCTAAGTATTTGATT+TGG | + | chr3_1:3476059-3476078 | None:intergenic | 25.0% |
| ! | AAAAAAGTTATAAGAAACGG+GGG | - | chr3_1:3476188-3476207 | Msa0344700:CDS | 25.0% |
| !!! | TTTGTTTTGGCCTAATTAAA+TGG | - | chr3_1:3476246-3476265 | Msa0344700:CDS | 25.0% |
| ! | AGAAGGAAATCCATTTAATT+AGG | + | chr3_1:3476259-3476278 | None:intergenic | 25.0% |
| !! | AATTAAATGGATTTCCTTCT+CGG | - | chr3_1:3476259-3476278 | Msa0344700:CDS | 25.0% |
| !! | TTTTCTTTCTTTCTACAACT+CGG | + | chr3_1:3476288-3476307 | None:intergenic | 25.0% |
| ! | TATAACTTGATATGACTACT+AGG | + | chr3_1:3476327-3476346 | None:intergenic | 25.0% |
| ! | AGAAAAGTTCAATTCTAACA+TGG | + | chr3_1:3476398-3476417 | None:intergenic | 25.0% |
| ! | AATCTCATATATCGTGAATA+TGG | + | chr3_1:3476537-3476556 | None:intergenic | 25.0% |
| ! | GTATATTCTTGCATTTGTAT+TGG | - | chr3_1:3476565-3476584 | Msa0344700:intron | 25.0% |
| ! | ATATTCTTGCATTTGTATTG+GGG | - | chr3_1:3476567-3476586 | Msa0344700:intron | 25.0% |
| !! | AAAGCATTAATTGCATCAAA+CGG | - | chr3_1:3476637-3476656 | Msa0344700:intron | 25.0% |
| !! | TCCCTCTATTTAAGTATTTT+TGG | - | chr3_1:3477032-3477051 | Msa0344700:intron | 25.0% |
| ! | CCCAAAAATACTTAAATAGA+GGG | + | chr3_1:3477036-3477055 | None:intergenic | 25.0% |
| !! | CCCTCTATTTAAGTATTTTT+GGG | - | chr3_1:3477033-3477052 | Msa0344700:intron | 25.0% |
| !!! | CCTCTATTTAAGTATTTTTG+GGG | - | chr3_1:3477034-3477053 | Msa0344700:intron | 25.0% |
| !!! | TATTTAAGTATTTTTGGGGT+TGG | - | chr3_1:3477038-3477057 | Msa0344700:intron | 25.0% |
| !!! | ATTTAAGTATTTTTGGGGTT+GGG | - | chr3_1:3477039-3477058 | Msa0344700:intron | 25.0% |
| ! | AAAAAGGAACAAGTATAGAT+GGG | - | chr3_1:3477096-3477115 | Msa0344700:intron | 25.0% |
| AAAACTATGGAGAGAAAATG+GGG | + | chr3_1:3476229-3476248 | None:intergenic | 30.0% | |
| CAAAACTATGGAGAGAAAAT+GGG | + | chr3_1:3476230-3476249 | None:intergenic | 30.0% | |
| ACAAAACTATGGAGAGAAAA+TGG | + | chr3_1:3476231-3476250 | None:intergenic | 30.0% | |
| !!! | TTCTCTCCATAGTTTTGTTT+TGG | - | chr3_1:3476233-3476252 | Msa0344700:intron | 30.0% |
| ATTAGGCCAAAACAAAACTA+TGG | + | chr3_1:3476242-3476261 | None:intergenic | 30.0% | |
| TTACTATCATGGTTCTTACA+TGG | + | chr3_1:3476482-3476501 | None:intergenic | 30.0% | |
| AACAATAGAGAGACTGATAA+AGG | + | chr3_1:3476863-3476882 | None:intergenic | 30.0% | |
| TTGCTATAGGAACGATAATA+CGG | + | chr3_1:3476906-3476925 | None:intergenic | 30.0% | |
| !!! | GAATTCTTTTTTCTGTGATC+AGG | - | chr3_1:3476980-3476999 | Msa0344700:intron | 30.0% |
| CCCCAAAAATACTTAAATAG+AGG | + | chr3_1:3477037-3477056 | None:intergenic | 30.0% | |
| CAAAAAGGAACAAGTATAGA+TGG | - | chr3_1:3477095-3477114 | Msa0344700:intron | 30.0% | |
| TGATTATTTGTATGCTCTTC+TGG | - | chr3_1:3477160-3477179 | Msa0344700:intron | 30.0% | |
| !! | AGATTTTGAGAAAAACCAGA+AGG | + | chr3_1:3477213-3477232 | Msa0344710:exon | 30.0% |
| AAAACTATGGAGAGAAAATG+GGG | + | chr3_1:3476229-3476248 | None:intergenic | 30.0% | |
| CAAAACTATGGAGAGAAAAT+GGG | + | chr3_1:3476230-3476249 | None:intergenic | 30.0% | |
| ACAAAACTATGGAGAGAAAA+TGG | + | chr3_1:3476231-3476250 | None:intergenic | 30.0% | |
| !!! | TTCTCTCCATAGTTTTGTTT+TGG | - | chr3_1:3476233-3476252 | Msa0344700:intron | 30.0% |
| ATTAGGCCAAAACAAAACTA+TGG | + | chr3_1:3476242-3476261 | None:intergenic | 30.0% | |
| TTACTATCATGGTTCTTACA+TGG | + | chr3_1:3476482-3476501 | None:intergenic | 30.0% | |
| AACAATAGAGAGACTGATAA+AGG | + | chr3_1:3476863-3476882 | None:intergenic | 30.0% | |
| TTGCTATAGGAACGATAATA+CGG | + | chr3_1:3476906-3476925 | None:intergenic | 30.0% | |
| !!! | GAATTCTTTTTTCTGTGATC+AGG | - | chr3_1:3476980-3476999 | Msa0344700:intron | 30.0% |
| CCCCAAAAATACTTAAATAG+AGG | + | chr3_1:3477037-3477056 | None:intergenic | 30.0% | |
| CAAAAAGGAACAAGTATAGA+TGG | - | chr3_1:3477095-3477114 | Msa0344700:intron | 30.0% | |
| TGATTATTTGTATGCTCTTC+TGG | - | chr3_1:3477160-3477179 | Msa0344700:intron | 30.0% | |
| !! | AGATTTTGAGAAAAACCAGA+AGG | + | chr3_1:3477213-3477232 | Msa0344710:exon | 30.0% |
| CTTTGCAAACAAGACAGAAA+TGG | - | chr3_1:3475783-3475802 | Msa0344700:CDS | 35.0% | |
| CATGATGTTAATTGCTAAGC+CGG | + | chr3_1:3475897-3475916 | None:intergenic | 35.0% | |
| AAAATGGGGTCTCCTTATTA+CGG | + | chr3_1:3476215-3476234 | None:intergenic | 35.0% | |
| TTGATATGACTACTAGGAGA+AGG | + | chr3_1:3476321-3476340 | None:intergenic | 35.0% | |
| ! | AGGACAGAGTATTACTATCA+TGG | + | chr3_1:3476493-3476512 | None:intergenic | 35.0% |
| AATTGCATCAAACGGATCAA+AGG | - | chr3_1:3476645-3476664 | Msa0344700:intron | 35.0% | |
| ATCAAACGGATCAAAGGAAA+AGG | - | chr3_1:3476651-3476670 | Msa0344700:intron | 35.0% | |
| TCAAACGGATCAAAGGAAAA+GGG | - | chr3_1:3476652-3476671 | Msa0344700:intron | 35.0% | |
| ATTAAACTCGTAGCCCATAA+TGG | + | chr3_1:3476733-3476752 | None:intergenic | 35.0% | |
| AGAAGACTGAGAAAACACAA+TGG | + | chr3_1:3476761-3476780 | None:intergenic | 35.0% | |
| TCTACCTTCTATACCAAACA+AGG | - | chr3_1:3476778-3476797 | Msa0344700:intron | 35.0% | |
| ! | AACACCTTGTTTGGTATAGA+AGG | + | chr3_1:3476785-3476804 | None:intergenic | 35.0% |
| TAAAGGATTGAAGAGAAGCA+GGG | + | chr3_1:3476846-3476865 | None:intergenic | 35.0% | |
| ATAAAGGATTGAAGAGAAGC+AGG | + | chr3_1:3476847-3476866 | None:intergenic | 35.0% | |
| ATGCTACAGAGAATTGAACT+CGG | - | chr3_1:3476958-3476977 | Msa0344700:intron | 35.0% | |
| CTCATCTCTGCTATTCAAAA+AGG | - | chr3_1:3477080-3477099 | Msa0344700:intron | 35.0% | |
| !! | TTTTGAGAAAAACCAGAAGG+CGG | + | chr3_1:3477210-3477229 | Msa0344710:exon | 35.0% |
| CTTTGCAAACAAGACAGAAA+TGG | - | chr3_1:3475783-3475802 | Msa0344700:CDS | 35.0% | |
| CATGATGTTAATTGCTAAGC+CGG | + | chr3_1:3475897-3475916 | None:intergenic | 35.0% | |
| AAAATGGGGTCTCCTTATTA+CGG | + | chr3_1:3476215-3476234 | None:intergenic | 35.0% | |
| TTGATATGACTACTAGGAGA+AGG | + | chr3_1:3476321-3476340 | None:intergenic | 35.0% | |
| ! | AGGACAGAGTATTACTATCA+TGG | + | chr3_1:3476493-3476512 | None:intergenic | 35.0% |
| AATTGCATCAAACGGATCAA+AGG | - | chr3_1:3476645-3476664 | Msa0344700:intron | 35.0% | |
| ATCAAACGGATCAAAGGAAA+AGG | - | chr3_1:3476651-3476670 | Msa0344700:intron | 35.0% | |
| TCAAACGGATCAAAGGAAAA+GGG | - | chr3_1:3476652-3476671 | Msa0344700:intron | 35.0% | |
| ATTAAACTCGTAGCCCATAA+TGG | + | chr3_1:3476733-3476752 | None:intergenic | 35.0% | |
| AGAAGACTGAGAAAACACAA+TGG | + | chr3_1:3476761-3476780 | None:intergenic | 35.0% | |
| TCTACCTTCTATACCAAACA+AGG | - | chr3_1:3476778-3476797 | Msa0344700:intron | 35.0% | |
| ! | AACACCTTGTTTGGTATAGA+AGG | + | chr3_1:3476785-3476804 | None:intergenic | 35.0% |
| TAAAGGATTGAAGAGAAGCA+GGG | + | chr3_1:3476846-3476865 | None:intergenic | 35.0% | |
| ATAAAGGATTGAAGAGAAGC+AGG | + | chr3_1:3476847-3476866 | None:intergenic | 35.0% | |
| ATGCTACAGAGAATTGAACT+CGG | - | chr3_1:3476958-3476977 | Msa0344700:intron | 35.0% | |
| CTCATCTCTGCTATTCAAAA+AGG | - | chr3_1:3477080-3477099 | Msa0344700:intron | 35.0% | |
| !! | TTTTGAGAAAAACCAGAAGG+CGG | + | chr3_1:3477210-3477229 | Msa0344710:exon | 35.0% |
| !!! | GGGTTTTGGGTTTTAACAAG+AGG | - | chr3_1:3475820-3475839 | Msa0344700:CDS | 40.0% |
| !! | TGGGTTTTAACAAGAGGAAG+AGG | - | chr3_1:3475826-3475845 | Msa0344700:CDS | 40.0% |
| CAAACGGATCAAAGGAAAAG+GGG | - | chr3_1:3476653-3476672 | Msa0344700:intron | 40.0% | |
| !! | CTCTGAAGTTGAAGAAGCAA+AGG | - | chr3_1:3476690-3476709 | Msa0344700:intron | 40.0% |
| ! | TACCAAACAAGGTGTTACGT+TGG | - | chr3_1:3476789-3476808 | Msa0344700:intron | 40.0% |
| ! | TTGGACAGGAAAATTTTGCC+TGG | - | chr3_1:3476808-3476827 | Msa0344700:intron | 40.0% |
| AAAGGATTGAAGAGAAGCAG+GGG | + | chr3_1:3476845-3476864 | None:intergenic | 40.0% | |
| ACGATAATACGGTCATAGAC+AGG | + | chr3_1:3476895-3476914 | None:intergenic | 40.0% | |
| ! | CCAGTAAAGGTTCTTGCTAT+AGG | + | chr3_1:3476919-3476938 | None:intergenic | 40.0% |
| CCTATAGCAAGAACCTTTAC+TGG | - | chr3_1:3476916-3476935 | Msa0344700:intron | 40.0% | |
| !!! | TTTTTTCTGTGATCAGGTCC+CGG | - | chr3_1:3476986-3477005 | Msa0344700:intron | 40.0% |
| CCACACTTCTTAATTCATCC+GGG | + | chr3_1:3477007-3477026 | None:intergenic | 40.0% | |
| CCCACACTTCTTAATTCATC+CGG | + | chr3_1:3477008-3477027 | None:intergenic | 40.0% | |
| ! | CCGGATGAATTAAGAAGTGT+GGG | - | chr3_1:3477005-3477024 | Msa0344700:intron | 40.0% |
| !!! | GGGTTTTGGGTTTTAACAAG+AGG | - | chr3_1:3475820-3475839 | Msa0344700:CDS | 40.0% |
| !! | TGGGTTTTAACAAGAGGAAG+AGG | - | chr3_1:3475826-3475845 | Msa0344700:CDS | 40.0% |
| CAAACGGATCAAAGGAAAAG+GGG | - | chr3_1:3476653-3476672 | Msa0344700:intron | 40.0% | |
| !! | CTCTGAAGTTGAAGAAGCAA+AGG | - | chr3_1:3476690-3476709 | Msa0344700:intron | 40.0% |
| ! | TACCAAACAAGGTGTTACGT+TGG | - | chr3_1:3476789-3476808 | Msa0344700:intron | 40.0% |
| ! | TTGGACAGGAAAATTTTGCC+TGG | - | chr3_1:3476808-3476827 | Msa0344700:intron | 40.0% |
| AAAGGATTGAAGAGAAGCAG+GGG | + | chr3_1:3476845-3476864 | None:intergenic | 40.0% | |
| ACGATAATACGGTCATAGAC+AGG | + | chr3_1:3476895-3476914 | None:intergenic | 40.0% | |
| ! | CCAGTAAAGGTTCTTGCTAT+AGG | + | chr3_1:3476919-3476938 | None:intergenic | 40.0% |
| CCTATAGCAAGAACCTTTAC+TGG | - | chr3_1:3476916-3476935 | Msa0344700:intron | 40.0% | |
| !!! | TTTTTTCTGTGATCAGGTCC+CGG | - | chr3_1:3476986-3477005 | Msa0344700:intron | 40.0% |
| CCACACTTCTTAATTCATCC+GGG | + | chr3_1:3477007-3477026 | None:intergenic | 40.0% | |
| CCCACACTTCTTAATTCATC+CGG | + | chr3_1:3477008-3477027 | None:intergenic | 40.0% | |
| ! | CCGGATGAATTAAGAAGTGT+GGG | - | chr3_1:3477005-3477024 | Msa0344700:intron | 40.0% |
| TAAAAACTGGACGGTCGAAC+CGG | - | chr3_1:3475875-3475894 | Msa0344700:CDS | 45.0% | |
| AAGAAGCAAAGGCAATCCTC+AGG | - | chr3_1:3476701-3476720 | Msa0344700:intron | 45.0% | |
| ! | TCCTCAGGCTTGTTCCATTA+TGG | - | chr3_1:3476716-3476735 | Msa0344700:intron | 45.0% |
| ! | CCTCAGGCTTGTTCCATTAT+GGG | - | chr3_1:3476717-3476736 | Msa0344700:intron | 45.0% |
| GTCCAACGTAACACCTTGTT+TGG | + | chr3_1:3476794-3476813 | None:intergenic | 45.0% | |
| ! | AACAAGGTGTTACGTTGGAC+AGG | - | chr3_1:3476794-3476813 | Msa0344700:intron | 45.0% |
| AAGGATTGAAGAGAAGCAGG+GGG | + | chr3_1:3476844-3476863 | None:intergenic | 45.0% | |
| ACCTTTACTGGCAAACCATC+TGG | - | chr3_1:3476928-3476947 | Msa0344700:intron | 45.0% | |
| TGTAGCATAGTGATGCCAGA+TGG | + | chr3_1:3476946-3476965 | None:intergenic | 45.0% | |
| CCCGGATGAATTAAGAAGTG+TGG | - | chr3_1:3477004-3477023 | Msa0344700:intron | 45.0% | |
| ACAAGTATAGATGGGCGTGA+TGG | - | chr3_1:3477104-3477123 | Msa0344700:intron | 45.0% | |
| TAAAAACTGGACGGTCGAAC+CGG | - | chr3_1:3475875-3475894 | Msa0344700:CDS | 45.0% | |
| AAGAAGCAAAGGCAATCCTC+AGG | - | chr3_1:3476701-3476720 | Msa0344700:intron | 45.0% | |
| ! | TCCTCAGGCTTGTTCCATTA+TGG | - | chr3_1:3476716-3476735 | Msa0344700:intron | 45.0% |
| ! | CCTCAGGCTTGTTCCATTAT+GGG | - | chr3_1:3476717-3476736 | Msa0344700:intron | 45.0% |
| GTCCAACGTAACACCTTGTT+TGG | + | chr3_1:3476794-3476813 | None:intergenic | 45.0% | |
| ! | AACAAGGTGTTACGTTGGAC+AGG | - | chr3_1:3476794-3476813 | Msa0344700:intron | 45.0% |
| AAGGATTGAAGAGAAGCAGG+GGG | + | chr3_1:3476844-3476863 | None:intergenic | 45.0% | |
| ACCTTTACTGGCAAACCATC+TGG | - | chr3_1:3476928-3476947 | Msa0344700:intron | 45.0% | |
| TGTAGCATAGTGATGCCAGA+TGG | + | chr3_1:3476946-3476965 | None:intergenic | 45.0% | |
| CCCGGATGAATTAAGAAGTG+TGG | - | chr3_1:3477004-3477023 | Msa0344700:intron | 45.0% | |
| ACAAGTATAGATGGGCGTGA+TGG | - | chr3_1:3477104-3477123 | Msa0344700:intron | 45.0% | |
| AGAAACGGGGGACCGTAATA+AGG | - | chr3_1:3476200-3476219 | Msa0344700:CDS | 50.0% | |
| CTACAACTCGGTATCCGAGA+AGG | + | chr3_1:3476276-3476295 | None:intergenic | 50.0% | |
| ! | CCCATAATGGAACAAGCCTG+AGG | + | chr3_1:3476720-3476739 | None:intergenic | 50.0% |
| ! | GCAGGGGGTACATAAAAACC+AGG | + | chr3_1:3476829-3476848 | None:intergenic | 50.0% |
| ! | GCCAGATGGTTTGCCAGTAA+AGG | + | chr3_1:3476932-3476951 | None:intergenic | 50.0% |
| ! | GTATAGATGGGCGTGATGGA+TGG | - | chr3_1:3477108-3477127 | Msa0344700:intron | 50.0% |
| TGGTGGAATTATCCGCCTTC+TGG | - | chr3_1:3477195-3477214 | Msa0344700:intron | 50.0% | |
| AGAAACGGGGGACCGTAATA+AGG | - | chr3_1:3476200-3476219 | Msa0344700:CDS | 50.0% | |
| CTACAACTCGGTATCCGAGA+AGG | + | chr3_1:3476276-3476295 | None:intergenic | 50.0% | |
| ! | CCCATAATGGAACAAGCCTG+AGG | + | chr3_1:3476720-3476739 | None:intergenic | 50.0% |
| ! | GCAGGGGGTACATAAAAACC+AGG | + | chr3_1:3476829-3476848 | None:intergenic | 50.0% |
| ! | GCCAGATGGTTTGCCAGTAA+AGG | + | chr3_1:3476932-3476951 | None:intergenic | 50.0% |
| ! | GTATAGATGGGCGTGATGGA+TGG | - | chr3_1:3477108-3477127 | Msa0344700:intron | 50.0% |
| TGGTGGAATTATCCGCCTTC+TGG | - | chr3_1:3477195-3477214 | Msa0344700:intron | 50.0% | |
| ! | TCTTCTGGCTGCTCTTAGCG+TGG | - | chr3_1:3477175-3477194 | Msa0344700:intron | 55.0% |
| ! | TCTTCTGGCTGCTCTTAGCG+TGG | - | chr3_1:3477175-3477194 | Msa0344700:intron | 55.0% |
| TCTGGCTGCTCTTAGCGTGG+TGG | - | chr3_1:3477178-3477197 | Msa0344700:intron | 60.0% | |
| TCTGGCTGCTCTTAGCGTGG+TGG | - | chr3_1:3477178-3477197 | Msa0344700:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 3475740 | 3477259 | 3475740 | ID=Msa0344700;Name=Msa0344700 |
| chr3_1 | mRNA | 3475740 | 3477259 | 3475740 | ID=Msa0344700-mRNA-1;Parent=Msa0344700;Name=Msa0344700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.75|0|0.25|4|0|205 |
| chr3_1 | exon | 3477255 | 3477259 | 3477255 | ID=Msa0344700-mRNA-1:exon:1086;Parent=Msa0344700-mRNA-1 |
| chr3_1 | exon | 3476237 | 3476372 | 3476237 | ID=Msa0344700-mRNA-1:exon:1085;Parent=Msa0344700-mRNA-1 |
| chr3_1 | exon | 3476006 | 3476224 | 3476006 | ID=Msa0344700-mRNA-1:exon:1084;Parent=Msa0344700-mRNA-1 |
| chr3_1 | exon | 3475740 | 3475997 | 3475740 | ID=Msa0344700-mRNA-1:exon:1083;Parent=Msa0344700-mRNA-1 |
| chr3_1 | CDS | 3477255 | 3477259 | 3477255 | ID=Msa0344700-mRNA-1:cds;Parent=Msa0344700-mRNA-1 |
| chr3_1 | CDS | 3476237 | 3476372 | 3476237 | ID=Msa0344700-mRNA-1:cds;Parent=Msa0344700-mRNA-1 |
| chr3_1 | CDS | 3476006 | 3476224 | 3476006 | ID=Msa0344700-mRNA-1:cds;Parent=Msa0344700-mRNA-1 |
| chr3_1 | CDS | 3475740 | 3475997 | 3475740 | ID=Msa0344700-mRNA-1:cds;Parent=Msa0344700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
