AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229350 MtrunA17_Chr4g0059171 97.333 300 8 0 1 300 1 300 0.0 608
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229350 AT5G62840.1 70.260 269 74 2 32 300 35 297 2.12e-138 393
Msa0229350 AT5G62840.2 76.339 224 53 0 77 300 9 232 2.06e-130 370

Find 109 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACCCTCTCTTATTAAT+TGG 0.167996 2_2:-1046577 Msa0229350:three_prime_UTR
TTTGAGCTACATTGTGTAAA+TGG 0.201252 2_2:+1046601 None:intergenic
TTAAACTGACTGAAGATAAT+TGG 0.208203 2_2:-1047042 Msa0229350:three_prime_UTR
AGAATCAGAGTTTGAGAGTA+TGG 0.209979 2_2:-1048594 Msa0229350:CDS
ACCTTATTATACCAGATAAA+TGG 0.215021 2_2:-1047156 Msa0229350:three_prime_UTR
TTTCTTGATGCCCGGGGATT+AGG 0.240707 2_2:-1048255 Msa0229350:CDS
GGAAGACATGGTGGTTGTTC+TGG 0.260928 2_2:+1048806 None:intergenic
GAGGAGGTTGTTGAGTTGTT+TGG 0.273887 2_2:+1048781 None:intergenic
TAAAAGAGCTAATTACAATT+TGG 0.279975 2_2:+1047187 None:intergenic
AGGAGGTTGTTGAGTTGTTT+GGG 0.284336 2_2:+1048782 None:intergenic
GCTATACATGTCCATTTATC+TGG 0.284457 2_2:+1047145 None:intergenic
TCCATTTATCTGGTATAATA+AGG 0.292604 2_2:+1047155 None:intergenic
TTAATTGTAACAATGTCTTT+TGG 0.304219 2_2:-1046627 Msa0229350:three_prime_UTR
GTGATAATAATTGTTGGATT+TGG 0.325911 2_2:-1048460 Msa0229350:CDS
TGATTTCAGTTATATTGTTC+CGG 0.332744 2_2:-1048286 Msa0229350:intron
CGTACTTTGCTTATTTGCTT+TGG 0.336461 2_2:+1046780 None:intergenic
GATAATGGTTTATCTGATAG+AGG 0.351718 2_2:-1048533 Msa0229350:CDS
GTCAATCCTTCAGGCTGGTT+TGG 0.352871 2_2:-1047466 Msa0229350:CDS
CTAATTACAATTTGGTAGCT+TGG 0.355446 2_2:+1047195 None:intergenic
AGTCCACTGGCAATGGCTAC+TGG 0.359432 2_2:+1048671 None:intergenic
CTGTTAATTCTATTACTAGA+AGG 0.363981 2_2:-1048391 Msa0229350:intron
AGGGTTTGACACGTGTTATT+TGG 0.364172 2_2:+1048842 None:intergenic
ACATCTGCAACACTCTCATT+TGG 0.372094 2_2:+1047579 None:intergenic
GGATAACTTGTCAATCCTTC+AGG 0.382464 2_2:-1047475 Msa0229350:CDS
TGAAGTGAGGTTGAAGTTGA+AGG 0.399429 2_2:+1048718 None:intergenic
CGTTATAGTCTCGCCAGATT+CGG 0.401884 2_2:-1047496 Msa0229350:CDS
AATGGCTACTGGGTCTGAAA+TGG 0.406139 2_2:+1048682 None:intergenic
AGATTACTTGTCTTTCAGTT+TGG 0.412826 2_2:-1046730 Msa0229350:three_prime_UTR
CACCAGCGTATTGAGTTTCA+AGG 0.416878 2_2:+1047526 None:intergenic
CAGTACTATCTTGTGAGGTC+TGG 0.429270 2_2:-1048617 Msa0229350:CDS
ATTTGGAGTTCCGTCATCAA+TGG 0.433255 2_2:+1047596 None:intergenic
GAATCAGAGTTTGAGAGTAT+GGG 0.435737 2_2:-1048593 Msa0229350:CDS
ATTCATCGTTGCTTATGATA+AGG 0.437214 2_2:-1048927 Msa0229350:five_prime_UTR
TTCAAGGATTGACATGAGTT+GGG 0.442821 2_2:+1047542 None:intergenic
GCATCAAGAAAGCTGTATTC+CGG 0.443393 2_2:+1048267 None:intergenic
ATTGACAAGTTATCCGAATC+TGG 0.446235 2_2:+1047483 None:intergenic
TTTCAAGGATTGACATGAGT+TGG 0.449172 2_2:+1047541 None:intergenic
CATGAAAATGCATGGAATAG+AGG 0.461728 2_2:-1046961 Msa0229350:three_prime_UTR
TGAGAAGGTGGCGACGGTGG+AGG 0.463378 2_2:+1048762 None:intergenic
TTGATGACCAGAAGCGTTGT+GGG 0.464558 2_2:-1046755 Msa0229350:three_prime_UTR
GCGAAAACCTCTGTGGATAA+TGG 0.469059 2_2:-1048548 Msa0229350:CDS
TAGTGGTAGTCCATCGGTAA+TGG 0.469091 2_2:-1046697 Msa0229350:three_prime_UTR
AATACAGCTTTCTTGATGCC+CGG 0.469191 2_2:-1048263 Msa0229350:CDS
TGCACCTGGTGAAGTTCGCC+AGG 0.480792 2_2:-1047275 Msa0229350:CDS
TTTGGAGTTCCGTCATCAAT+GGG 0.482434 2_2:+1047597 None:intergenic
GGAGAAACAAATATAGTAGC+AGG 0.485495 2_2:-1046920 Msa0229350:three_prime_UTR
CTTCATAAGCACCTAATCCC+CGG 0.488075 2_2:+1048244 None:intergenic
GTGCTTGTGATAATAATTGT+TGG 0.488939 2_2:-1048466 Msa0229350:CDS
ATGGCTACTGGGTCTGAAAT+GGG 0.492102 2_2:+1048683 None:intergenic
ATACAGCTTTCTTGATGCCC+GGG 0.493819 2_2:-1048262 Msa0229350:CDS
GGAGATGGTGAATGCGGTTG+TGG 0.499094 2_2:+1048739 None:intergenic
CTTGTAAGTAGGAATGTCAT+TGG 0.501498 2_2:+1047246 None:intergenic
AGTGGTAGTCCATCGGTAAT+GGG 0.504086 2_2:-1046696 Msa0229350:three_prime_UTR
ATCCTTCAGGCTGGTTTGGT+AGG 0.505388 2_2:-1047462 Msa0229350:CDS
ATCAAGATATATGCTATAGC+AGG 0.510113 2_2:-1046889 Msa0229350:three_prime_UTR
GTCCACTGGCAATGGCTACT+GGG 0.514678 2_2:+1048672 None:intergenic
GAGCATTTATATACAGCAGA+TGG 0.517333 2_2:+1047217 None:intergenic
AACTTGTCAATCCTTCAGGC+TGG 0.518288 2_2:-1047471 Msa0229350:CDS
TTAGTTACCTTCGCAAGTCT+AGG 0.522431 2_2:+1047439 None:intergenic
ATTAAATTCATGAAAATGCA+TGG 0.524111 2_2:-1046969 Msa0229350:three_prime_UTR
GAAGGTGGCGACGGTGGAGG+AGG 0.525530 2_2:+1048765 None:intergenic
ATCGTTGCTTATGATAAGGC+AGG 0.535089 2_2:-1048923 Msa0229350:five_prime_UTR
TGGTGAGAAGGTGGCGACGG+TGG 0.535642 2_2:+1048759 None:intergenic
AGTTGTTTGGGAGGAAGACA+TGG 0.536257 2_2:+1048794 None:intergenic
TTCTGGCTGAGAAAATGAAA+GGG 0.541301 2_2:+1048823 None:intergenic
GATGAAGAGTCCACTGGCAA+TGG 0.543180 2_2:+1048664 None:intergenic
CAGACCTCACAAGATAGTAC+TGG 0.547671 2_2:+1048618 None:intergenic
TTCATAAGCACCTAATCCCC+GGG 0.556032 2_2:+1048245 None:intergenic
TCAACCTGGCGAACTTCACC+AGG 0.560030 2_2:+1047271 None:intergenic
TTTGATGACCAGAAGCGTTG+TGG 0.560922 2_2:-1046756 Msa0229350:three_prime_UTR
GATGGAGGCATCTTGTAAGT+AGG 0.561832 2_2:+1047235 None:intergenic
TTTCTCCAATTAATAAGAGA+GGG 0.564698 2_2:+1046572 None:intergenic
GTTCTGGCTGAGAAAATGAA+AGG 0.568548 2_2:+1048822 None:intergenic
AGGTGACGGAAATGATATTG+AGG 0.568857 2_2:-1046941 Msa0229350:three_prime_UTR
GTTTCTCCAATTAATAAGAG+AGG 0.570676 2_2:+1046571 None:intergenic
CGGGGATTAGGTGCTTATGA+AGG 0.572396 2_2:-1048243 Msa0229350:CDS
TAAGCTCTCTGAGTAATAGC+AGG 0.573762 2_2:+1048437 None:intergenic
GTTCCGTCATCAATGGGAGG+AGG 0.579788 2_2:+1047603 None:intergenic
TTGTGGTGAGAAGGTGGCGA+CGG 0.590124 2_2:+1048756 None:intergenic
GGCCTACCAAACCAGCCTGA+AGG 0.599102 2_2:+1047460 None:intergenic
AGGTTGTTGAGTTGTTTGGG+AGG 0.599491 2_2:+1048785 None:intergenic
GACCCAGTAGCCATTGCCAG+TGG 0.599668 2_2:-1048674 Msa0229350:CDS
TGGTAGGCCTAGACTTGCGA+AGG 0.604829 2_2:-1047446 Msa0229350:intron
TGAATGCGGTTGTGGTGAGA+AGG 0.616152 2_2:+1048747 None:intergenic
ATAATGGTTTATCTGATAGA+GGG 0.616419 2_2:-1048532 Msa0229350:CDS
AATGCATGGAATAGAGGTGA+CGG 0.617806 2_2:-1046955 Msa0229350:three_prime_UTR
TATCTGGTATAATAAGGTGA+AGG 0.618225 2_2:+1047161 None:intergenic
GTGCAGATATATGCATCAGA+TGG 0.620930 2_2:-1047645 Msa0229350:intron
ATCCTTGAAACTCAATACGC+TGG 0.621540 2_2:-1047528 Msa0229350:CDS
TGATGACCAGAAGCGTTGTG+GGG 0.624923 2_2:-1046754 Msa0229350:three_prime_UTR
TGGGTCTGAAATGGGAAGTG+TGG 0.624924 2_2:+1048691 None:intergenic
GATGACCAGAAGCGTTGTGG+GGG 0.625819 2_2:-1046753 Msa0229350:three_prime_UTR
TGTTTGGGAGGAAGACATGG+TGG 0.625868 2_2:+1048797 None:intergenic
GAGGTTGAAGTTGAAGGAGA+TGG 0.626119 2_2:+1048724 None:intergenic
AAACCTCCTCCCATTGATGA+CGG 0.626640 2_2:-1047606 Msa0229350:CDS
TACAGCTTTCTTGATGCCCG+GGG 0.627678 2_2:-1048261 Msa0229350:CDS
AGGCATGATGAAGAGTCCAC+TGG 0.631288 2_2:+1048658 None:intergenic
CCCTGTGGCGAAAACCTCTG+TGG 0.637394 2_2:-1048555 Msa0229350:CDS
GAATGTCATTGGTATCAACC+TGG 0.639678 2_2:+1047257 None:intergenic
GAAACAAATATAGTAGCAGG+AGG 0.641743 2_2:-1046917 Msa0229350:three_prime_UTR
TGTCTCAAATTTCAGGCACA+GGG 0.642949 2_2:-1047308 Msa0229350:intron
CATTTATATACAGCAGATGG+AGG 0.643462 2_2:+1047220 None:intergenic
GGAGTTCCGTCATCAATGGG+AGG 0.650140 2_2:+1047600 None:intergenic
ATGCGGTTGTGGTGAGAAGG+TGG 0.658744 2_2:+1048750 None:intergenic
GTTGAAGGAGATGGTGAATG+CGG 0.660211 2_2:+1048733 None:intergenic
AAAACCAGTACTATCTTGTG+AGG 0.679514 2_2:-1048622 Msa0229350:CDS
TGTGTGTAGTGGTAGTCCAT+CGG 0.682985 2_2:-1046703 Msa0229350:three_prime_UTR
AGATAAACCATTATCCACAG+AGG 0.721820 2_2:+1048541 None:intergenic
AGTGATAAACACCAACCCTG+TGG 0.739470 2_2:-1048570 Msa0229350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTATTATTAGAGTTT+CGG + chr2_2:1047409-1047428 None:intergenic 15.0%
!! AACAATTATTATTAGAGTTT+CGG + chr2_2:1047409-1047428 None:intergenic 15.0%
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr2_2:1047166-1047185 Msa0229350:three_prime_UTR 20.0%
!! AAAGTAAATAAAACAGTACA+TGG + chr2_2:1047311-1047330 None:intergenic 20.0%
!! ACTCTAATAATAATTGTTGT+CGG - chr2_2:1047411-1047430 Msa0229350:intron 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr2_2:1047599-1047618 Msa0229350:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr2_2:1047633-1047652 Msa0229350:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr2_2:1048305-1048324 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr2_2:1048417-1048436 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr2_2:1048520-1048539 Msa0229350:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr2_2:1048862-1048881 Msa0229350:exon 20.0%
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr2_2:1047166-1047185 Msa0229350:three_prime_UTR 20.0%
!! AAAGTAAATAAAACAGTACA+TGG + chr2_2:1047311-1047330 None:intergenic 20.0%
!! ACTCTAATAATAATTGTTGT+CGG - chr2_2:1047411-1047430 Msa0229350:intron 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr2_2:1047599-1047618 Msa0229350:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr2_2:1047633-1047652 Msa0229350:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr2_2:1048305-1048324 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr2_2:1048417-1048436 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr2_2:1048520-1048539 Msa0229350:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr2_2:1048862-1048881 Msa0229350:exon 20.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr2_2:1046611-1046630 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr2_2:1046957-1046976 Msa0229350:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr2_2:1047000-1047019 Msa0229350:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr2_2:1047001-1047020 Msa0229350:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr2_2:1047029-1047048 Msa0229350:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr2_2:1047098-1047117 Msa0229350:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr2_2:1047165-1047184 Msa0229350:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr2_2:1047203-1047222 Msa0229350:CDS 25.0%
! TAATACATGAGATTCTTGTT+AGG + chr2_2:1047441-1047460 None:intergenic 25.0%
! TACTAAGAAGGTGATTTAAT+TGG - chr2_2:1047472-1047491 Msa0229350:CDS 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr2_2:1047600-1047619 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr2_2:1047634-1047653 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr2_2:1047632-1047651 Msa0229350:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr2_2:1047774-1047793 Msa0229350:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr2_2:1047819-1047838 Msa0229350:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr2_2:1047822-1047841 Msa0229350:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr2_2:1048113-1048132 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr2_2:1048333-1048352 Msa0229350:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr2_2:1048337-1048356 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr2_2:1048447-1048466 Msa0229350:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr2_2:1048831-1048850 Msa0229350:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr2_2:1048920-1048939 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr2_2:1048943-1048962 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr2_2:1048944-1048963 Msa0229350:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr2_2:1048952-1048971 Msa0229350:five_prime_UTR 25.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr2_2:1046611-1046630 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr2_2:1046957-1046976 Msa0229350:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr2_2:1047000-1047019 Msa0229350:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr2_2:1047001-1047020 Msa0229350:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr2_2:1047029-1047048 Msa0229350:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr2_2:1047098-1047117 Msa0229350:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr2_2:1047165-1047184 Msa0229350:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr2_2:1047203-1047222 Msa0229350:CDS 25.0%
! TAATACATGAGATTCTTGTT+AGG + chr2_2:1047441-1047460 None:intergenic 25.0%
! TACTAAGAAGGTGATTTAAT+TGG - chr2_2:1047472-1047491 Msa0229350:CDS 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr2_2:1047600-1047619 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr2_2:1047634-1047653 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr2_2:1047632-1047651 Msa0229350:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr2_2:1047774-1047793 Msa0229350:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr2_2:1047819-1047838 Msa0229350:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr2_2:1047822-1047841 Msa0229350:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr2_2:1048113-1048132 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr2_2:1048333-1048352 Msa0229350:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr2_2:1048337-1048356 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr2_2:1048447-1048466 Msa0229350:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr2_2:1048831-1048850 Msa0229350:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr2_2:1048920-1048939 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr2_2:1048943-1048962 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr2_2:1048944-1048963 Msa0229350:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr2_2:1048952-1048971 Msa0229350:five_prime_UTR 25.0%
ATTCATCGTTGCTTATGATA+AGG - chr2_2:1046562-1046581 Msa0229350:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr2_2:1046865-1046884 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr2_2:1046956-1046975 Msa0229350:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr2_2:1047023-1047042 Msa0229350:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr2_2:1047110-1047129 Msa0229350:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr2_2:1047153-1047172 Msa0229350:three_prime_UTR 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr2_2:1048107-1048126 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr2_2:1048174-1048193 Msa0229350:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr2_2:1048297-1048316 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr2_2:1048331-1048350 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr2_2:1048600-1048619 Msa0229350:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr2_2:1048759-1048778 Msa0229350:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr2_2:1048891-1048910 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr2_2:1048912-1048931 Msa0229350:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr2_2:1048921-1048940 None:intergenic 30.0%
ATTCATCGTTGCTTATGATA+AGG - chr2_2:1046562-1046581 Msa0229350:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr2_2:1046865-1046884 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr2_2:1046956-1046975 Msa0229350:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr2_2:1047023-1047042 Msa0229350:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr2_2:1047110-1047129 Msa0229350:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr2_2:1047153-1047172 Msa0229350:three_prime_UTR 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr2_2:1048107-1048126 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr2_2:1048174-1048193 Msa0229350:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr2_2:1048297-1048316 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr2_2:1048331-1048350 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr2_2:1048600-1048619 Msa0229350:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr2_2:1048759-1048778 Msa0229350:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr2_2:1048891-1048910 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr2_2:1048912-1048931 Msa0229350:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr2_2:1048921-1048940 None:intergenic 30.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr2_2:1046608-1046627 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr2_2:1046669-1046688 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr2_2:1046867-1046886 Msa0229350:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr2_2:1046895-1046914 Msa0229350:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr2_2:1046896-1046915 Msa0229350:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr2_2:1046951-1046970 None:intergenic 35.0%
TACATGAGATTCTTGTTAGG+AGG + chr2_2:1047438-1047457 None:intergenic 35.0%
AAATCACCTTCTTAGTAACC+AGG + chr2_2:1047469-1047488 None:intergenic 35.0%
GAAGGTGATTTAATTGGTGT+TGG - chr2_2:1047478-1047497 Msa0229350:CDS 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr2_2:1047950-1047969 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr2_2:1047951-1047970 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr2_2:1048009-1048028 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr2_2:1048246-1048265 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr2_2:1048272-1048291 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr2_2:1048275-1048294 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr2_2:1048347-1048366 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr2_2:1048528-1048547 Msa0229350:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr2_2:1048569-1048588 Msa0229350:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr2_2:1048572-1048591 Msa0229350:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr2_2:1048676-1048695 Msa0229350:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr2_2:1048677-1048696 Msa0229350:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr2_2:1048712-1048731 None:intergenic 35.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr2_2:1046608-1046627 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr2_2:1046669-1046688 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr2_2:1046867-1046886 Msa0229350:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr2_2:1046895-1046914 Msa0229350:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr2_2:1046896-1046915 Msa0229350:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr2_2:1046951-1046970 None:intergenic 35.0%
TACATGAGATTCTTGTTAGG+AGG + chr2_2:1047438-1047457 None:intergenic 35.0%
AAATCACCTTCTTAGTAACC+AGG + chr2_2:1047469-1047488 None:intergenic 35.0%
GAAGGTGATTTAATTGGTGT+TGG - chr2_2:1047478-1047497 Msa0229350:CDS 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr2_2:1047950-1047969 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr2_2:1047951-1047970 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr2_2:1048009-1048028 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr2_2:1048246-1048265 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr2_2:1048272-1048291 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr2_2:1048275-1048294 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr2_2:1048347-1048366 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr2_2:1048528-1048547 Msa0229350:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr2_2:1048569-1048588 Msa0229350:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr2_2:1048572-1048591 Msa0229350:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr2_2:1048676-1048695 Msa0229350:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr2_2:1048677-1048696 Msa0229350:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr2_2:1048712-1048731 None:intergenic 35.0%
ATCGTTGCTTATGATAAGGC+AGG - chr2_2:1046566-1046585 Msa0229350:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr2_2:1046604-1046623 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr2_2:1046650-1046669 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr2_2:1046670-1046689 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr2_2:1046710-1046729 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr2_2:1046774-1046793 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr2_2:1046787-1046806 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr2_2:1046860-1046879 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr2_2:1047055-1047074 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr2_2:1047225-1047244 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr2_2:1047226-1047245 Msa0229350:CDS 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr2_2:1047448-1047467 Msa0229350:CDS 40.0%
GTGCAGATATATGCATCAGA+TGG - chr2_2:1047844-1047863 Msa0229350:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr2_2:1047895-1047914 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr2_2:1047896-1047915 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr2_2:1047913-1047932 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr2_2:1047961-1047980 Msa0229350:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr2_2:1048014-1048033 Msa0229350:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr2_2:1048053-1048072 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr2_2:1048076-1048095 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr2_2:1048103-1048122 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr2_2:1048181-1048200 Msa0229350:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr2_2:1048235-1048254 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr2_2:1048534-1048553 Msa0229350:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr2_2:1048548-1048567 Msa0229350:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr2_2:1048640-1048659 Msa0229350:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr2_2:1048805-1048824 None:intergenic 40.0%
ATCGTTGCTTATGATAAGGC+AGG - chr2_2:1046566-1046585 Msa0229350:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr2_2:1046604-1046623 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr2_2:1046650-1046669 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr2_2:1046670-1046689 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr2_2:1046710-1046729 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr2_2:1046774-1046793 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr2_2:1046787-1046806 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr2_2:1046860-1046879 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr2_2:1047055-1047074 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr2_2:1047225-1047244 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr2_2:1047226-1047245 Msa0229350:CDS 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr2_2:1047448-1047467 Msa0229350:CDS 40.0%
GTGCAGATATATGCATCAGA+TGG - chr2_2:1047844-1047863 Msa0229350:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr2_2:1047895-1047914 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr2_2:1047896-1047915 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr2_2:1047913-1047932 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr2_2:1047961-1047980 Msa0229350:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr2_2:1048014-1048033 Msa0229350:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr2_2:1048053-1048072 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr2_2:1048076-1048095 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr2_2:1048103-1048122 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr2_2:1048181-1048200 Msa0229350:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr2_2:1048235-1048254 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr2_2:1048534-1048553 Msa0229350:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr2_2:1048548-1048567 Msa0229350:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr2_2:1048640-1048659 Msa0229350:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr2_2:1048805-1048824 None:intergenic 40.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr2_2:1046605-1046624 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr2_2:1046698-1046717 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr2_2:1046707-1046726 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr2_2:1046711-1046730 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr2_2:1046759-1046778 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr2_2:1046768-1046787 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr2_2:1046809-1046828 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr2_2:1046810-1046829 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr2_2:1046857-1046876 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr2_2:1046874-1046893 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr2_2:1046872-1046891 Msa0229350:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr2_2:1046919-1046938 Msa0229350:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr2_2:1046941-1046960 Msa0229350:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr2_2:1047227-1047246 Msa0229350:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr2_2:1047247-1047266 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr2_2:1047248-1047267 None:intergenic 45.0%
TGTCTCATGCAGACTGTAGT+AGG - chr2_2:1047365-1047384 Msa0229350:intron 45.0%
ACTCGTCCTGGTTACTAAGA+AGG - chr2_2:1047460-1047479 Msa0229350:CDS 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr2_2:1047883-1047902 Msa0229350:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr2_2:1047966-1047985 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr2_2:1047993-1048012 Msa0229350:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr2_2:1048018-1048037 Msa0229350:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr2_2:1048180-1048199 Msa0229350:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr2_2:1048257-1048276 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr2_2:1048733-1048752 Msa0229350:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr2_2:1048734-1048753 Msa0229350:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr2_2:1048775-1048794 Msa0229350:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr2_2:1048786-1048805 Msa0229350:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr2_2:1048792-1048811 Msa0229350:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr2_2:1048793-1048812 Msa0229350:CDS 45.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr2_2:1046605-1046624 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr2_2:1046698-1046717 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr2_2:1046707-1046726 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr2_2:1046711-1046730 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr2_2:1046759-1046778 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr2_2:1046768-1046787 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr2_2:1046809-1046828 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr2_2:1046810-1046829 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr2_2:1046857-1046876 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr2_2:1046874-1046893 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr2_2:1046872-1046891 Msa0229350:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr2_2:1046919-1046938 Msa0229350:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr2_2:1046941-1046960 Msa0229350:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr2_2:1047227-1047246 Msa0229350:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr2_2:1047247-1047266 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr2_2:1047248-1047267 None:intergenic 45.0%
TGTCTCATGCAGACTGTAGT+AGG - chr2_2:1047365-1047384 Msa0229350:intron 45.0%
ACTCGTCCTGGTTACTAAGA+AGG - chr2_2:1047460-1047479 Msa0229350:CDS 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr2_2:1047883-1047902 Msa0229350:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr2_2:1047966-1047985 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr2_2:1047993-1048012 Msa0229350:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr2_2:1048018-1048037 Msa0229350:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr2_2:1048180-1048199 Msa0229350:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr2_2:1048257-1048276 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr2_2:1048733-1048752 Msa0229350:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr2_2:1048734-1048753 Msa0229350:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr2_2:1048775-1048794 Msa0229350:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr2_2:1048786-1048805 Msa0229350:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr2_2:1048792-1048811 Msa0229350:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr2_2:1048793-1048812 Msa0229350:CDS 45.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr2_2:1046537-1046556 Msa0229350:three_prime_UTR 5.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr2_2:1046537-1046556 Msa0229350:three_prime_UTR 5.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr2_2:1046599-1046618 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr2_2:1046686-1046705 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr2_2:1046695-1046714 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr2_2:1046745-1046764 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr2_2:1046801-1046820 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr2_2:1046828-1046847 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr2_2:1046834-1046853 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr2_2:1046854-1046873 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr2_2:1047228-1047247 Msa0229350:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr2_2:1047234-1047253 Msa0229350:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr2_2:1047246-1047265 Msa0229350:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr2_2:1048023-1048042 Msa0229350:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr2_2:1048027-1048046 Msa0229350:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr2_2:1048093-1048112 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr2_2:1048200-1048219 Msa0229350:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr2_2:1048735-1048754 Msa0229350:CDS 50.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr2_2:1046599-1046618 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr2_2:1046686-1046705 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr2_2:1046695-1046714 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr2_2:1046745-1046764 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr2_2:1046801-1046820 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr2_2:1046828-1046847 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr2_2:1046834-1046853 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr2_2:1046854-1046873 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr2_2:1047228-1047247 Msa0229350:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr2_2:1047234-1047253 Msa0229350:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr2_2:1047246-1047265 Msa0229350:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr2_2:1048023-1048042 Msa0229350:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr2_2:1048027-1048046 Msa0229350:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr2_2:1048093-1048112 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr2_2:1048200-1048219 Msa0229350:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr2_2:1048735-1048754 Msa0229350:CDS 50.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr2_2:1046736-1046755 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr2_2:1046742-1046761 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr2_2:1046753-1046772 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr2_2:1046820-1046839 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr2_2:1046821-1046840 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr2_2:1046933-1046952 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr2_2:1046937-1046956 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr2_2:1046938-1046957 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr2_2:1047889-1047908 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr2_2:1047892-1047911 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr2_2:1048043-1048062 Msa0229350:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr2_2:1048097-1048116 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr2_2:1048221-1048240 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr2_2:1048736-1048755 Msa0229350:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr2_2:1048744-1048763 None:intergenic 55.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr2_2:1046736-1046755 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr2_2:1046742-1046761 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr2_2:1046753-1046772 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr2_2:1046820-1046839 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr2_2:1046821-1046840 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr2_2:1046933-1046952 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr2_2:1046937-1046956 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr2_2:1046938-1046957 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr2_2:1047889-1047908 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr2_2:1047892-1047911 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr2_2:1048043-1048062 Msa0229350:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr2_2:1048097-1048116 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr2_2:1048221-1048240 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr2_2:1048736-1048755 Msa0229350:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr2_2:1048744-1048763 None:intergenic 55.0%
GACCCAGTAGCCATTGCCAG+TGG - chr2_2:1046815-1046834 Msa0229350:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr2_2:1046934-1046953 Msa0229350:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr2_2:1048032-1048051 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr2_2:1048214-1048233 Msa0229350:intron 60.0%
GACCCAGTAGCCATTGCCAG+TGG - chr2_2:1046815-1046834 Msa0229350:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr2_2:1046934-1046953 Msa0229350:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr2_2:1048032-1048051 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr2_2:1048214-1048233 Msa0229350:intron 60.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr2_2:1046730-1046749 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr2_2:1046733-1046752 None:intergenic 65.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr2_2:1046730-1046749 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr2_2:1046733-1046752 None:intergenic 65.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr2_2:1046727-1046746 None:intergenic 70.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr2_2:1046727-1046746 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 1046536 1048975 1046536 ID=Msa0229350;Name=Msa0229350
chr2_2 mRNA 1046536 1048975 1046536 ID=Msa0229350-mRNA-1;Parent=Msa0229350;Name=Msa0229350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|1|1|4|659|300
chr2_2 exon 1046536 1047315 1046536 ID=Msa0229350-mRNA-1:exon:308;Parent=Msa0229350-mRNA-1
chr2_2 exon 1047447 1047661 1047447 ID=Msa0229350-mRNA-1:exon:307;Parent=Msa0229350-mRNA-1
chr2_2 exon 1048218 1048299 1048218 ID=Msa0229350-mRNA-1:exon:306;Parent=Msa0229350-mRNA-1
chr2_2 exon 1048392 1048975 1048392 ID=Msa0229350-mRNA-1:exon:305;Parent=Msa0229350-mRNA-1
chr2_2 five_prime_UTR 1048877 1048975 1048877 ID=Msa0229350-mRNA-1:five_prime_utr;Parent=Msa0229350-mRNA-1
chr2_2 CDS 1048392 1048876 1048392 ID=Msa0229350-mRNA-1:cds;Parent=Msa0229350-mRNA-1
chr2_2 CDS 1048218 1048299 1048218 ID=Msa0229350-mRNA-1:cds;Parent=Msa0229350-mRNA-1
chr2_2 CDS 1047447 1047661 1047447 ID=Msa0229350-mRNA-1:cds;Parent=Msa0229350-mRNA-1
chr2_2 CDS 1047195 1047315 1047195 ID=Msa0229350-mRNA-1:cds;Parent=Msa0229350-mRNA-1
chr2_2 three_prime_UTR 1046536 1047194 1046536 ID=Msa0229350-mRNA-1:three_prime_utr;Parent=Msa0229350-mRNA-1
Gene Sequence

>Msa0229350

ATGCTATTAGCACCAAATAACACGTGTCAAACCCTTTCATTTTCTCAGCCAGAACAACCACCATGTCTTCCTCCCAAACAACTCAACAACCTCCTCCACCGTCGCCACCTTCTCACCACAACCGCATTCACCATCTCCTTCAACTTCAACCTCACTTCAAAAACCACACTTCCCATTTCAGACCCAGTAGCCATTGCCAGTGGACTCTTCATCATGCCTCCACCACGCCTTAAAAACCAGTACTATCTTGTGAGGTCTGGAGAATCAGAGTTTGAGAGTATGGGAGTGATAAACACCAACCCTGTGGCGAAAACCTCTGTGGATAATGGTTTATCTGATAGAGGGAAGAAACAGAGTATCAGAGCTGCTTTTGATTTGAAAGAAATGGGTGCTTGTGATAATAATTGTTGGATTTGGCCTGCTATTACTCAGAGAGCTTATCAAACTGCTGAGATTATTGCTTCTGTTAATTCTATTACTAGAAGTTATATTGTTCCGGAATACAGCTTTCTTGATGCCCGGGGATTAGGTGCTTATGAAGGAAAAACTTTAGAATATGTTTCAGAAATATATGCATCAGATGGTATATCTACAAAAATAAAACCTCCTCCCATTGATGACGGAACTCCAAATGAGAGTGTTGCAGATGTTTTTGTTCGTGTGACCCAACTCATGTCAATCCTTGAAACTCAATACGCTGGTGACACAGTCGTTATAGTCTCGCCAGATTCGGATAACTTGTCAATCCTTCAGGCTGGTTTGGTAGGCCTAGACTTGCGAAGGCACAGGGAGTTGTCTTTTGCACCTGGTGAAGTTCGCCAGGTTGATACCAATGACATTCCTACTTACAAGATGCCTCCATCTGCTGTATATAAATGCTCCAAGCTACCAAATTGTAATTAG

Protein sequence

>Msa0229350

MLLAPNNTCQTLSFSQPEQPPCLPPKQLNNLLHRRHLLTTTAFTISFNFNLTSKTTLPISDPVAIASGLFIMPPPRLKNQYYLVRSGESEFESMGVINTNPVAKTSVDNGLSDRGKKQSIRAAFDLKEMGACDNNCWIWPAITQRAYQTAEIIASVNSITRSYIVPEYSFLDARGLGAYEGKTLEYVSEIYASDGISTKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYAGDTVVIVSPDSDNLSILQAGLVGLDLRRHRELSFAPGEVRQVDTNDIPTYKMPPSAVYKCSKLPNCN*