AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0209370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209370 MtrunA17_Chr2g0306771 89.529 382 12 2 1 354 1 382 0.0 688
Msa0209370 MtrunA17_Chr4g0008411 37.234 188 92 6 183 345 11 197 3.50e-21 91.3
Msa0209370 MtrunA17_Chr4g0008421 34.694 196 97 8 182 349 97 289 1.56e-19 87.4
Msa0209370 MtrunA17_Chr7g0266341 32.323 198 102 6 180 349 99 292 1.65e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209370 AT5G20140.1 64.957 351 94 3 33 354 28 378 3.83e-166 469
Msa0209370 AT5G20140.2 64.565 333 89 3 37 340 32 364 6.91e-156 443
Msa0209370 AT2G37970.1 33.971 209 94 8 182 349 41 246 3.36e-18 83.2
Msa0209370 AT3G10130.1 30.392 204 100 7 180 350 112 306 4.83e-16 78.2

Find 99 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCGCAGGTATATATT+TGG 0.154800 2_1:+47112439 Msa0209370:intron
AAATCATCATGCTTAGTAAT+TGG 0.154857 2_1:-47110358 None:intergenic
CCTCAATTTCCCAGGACTTT+TGG 0.191970 2_1:+47111692 Msa0209370:intron
CTACAACTTGCACCACTTTC+CGG 0.208753 2_1:+47110092 Msa0209370:CDS
CAGACCATCTTTAATGATAT+TGG 0.210028 2_1:-47112995 None:intergenic
TTCAACTAAGCTCAGATTAA+TGG 0.251072 2_1:-47110206 None:intergenic
AAGCTAACTGTTTCTTGATT+AGG 0.251086 2_1:-47112880 None:intergenic
ACAAATGGAGACAAGCTATC+TGG 0.265343 2_1:+47112306 Msa0209370:CDS
AAAAGACATATTAGCAAATA+AGG 0.276348 2_1:+47114458 Msa0209370:three_prime_UTR
TGTCTGATGGAAGAACTATT+TGG 0.281044 2_1:-47112546 None:intergenic
GTAGGCTTTCACTTATTCTT+TGG 0.282132 2_1:+47114540 Msa0209370:three_prime_UTR
ACTGTTTCTTGATTAGGATT+TGG 0.296904 2_1:-47112874 None:intergenic
AAACCAGAATTGGTCTTTAC+AGG 0.303338 2_1:+47111394 Msa0209370:CDS
GTTCCTGTAAAGACCAATTC+TGG 0.315384 2_1:-47111397 None:intergenic
CTTTACAGGAACATCTGTTA+TGG 0.331343 2_1:+47111408 Msa0209370:CDS
TCCTCACCTCTTTGATGATA+AGG 0.332232 2_1:+47110291 Msa0209370:CDS
ATGGGTGTTAACCCAGAAAA+TGG 0.339771 2_1:+47111427 Msa0209370:CDS
CCTCACCTCTTTGATGATAA+GGG 0.345368 2_1:+47110292 Msa0209370:CDS
GATTTACAAGACACCAGATT+TGG 0.350699 2_1:+47111890 Msa0209370:CDS
AACTATTTGGATTGAGACTT+TGG 0.355211 2_1:-47112533 None:intergenic
CAGATACAAGGAGTGATGTT+TGG 0.371055 2_1:+47114413 Msa0209370:three_prime_UTR
TACGGTGTCTCCGTGGTGGC+TGG 0.372285 2_1:-47110162 None:intergenic
AACAGAGAATGACATCAATA+TGG 0.376578 2_1:-47114349 None:intergenic
CTCTTTGTTTCTTTGTCTGA+TGG 0.379732 2_1:-47112559 None:intergenic
TATTTGGGTGATTCCAAATC+TGG 0.380267 2_1:-47111903 None:intergenic
AAATAAGGTGCATGGTCATT+AGG 0.381234 2_1:+47114473 Msa0209370:three_prime_UTR
CATCTTGTAGTTATTTCATA+AGG 0.386402 2_1:-47111337 None:intergenic
AGAGGAATGAAGTGCTCATT+TGG 0.389953 2_1:+47114207 Msa0209370:intron
ACCGGCTTTAATGATGTTGC+TGG 0.397252 2_1:+47112333 Msa0209370:CDS
TTGGCTAGATGACTTCTCAT+TGG 0.404823 2_1:+47114226 Msa0209370:CDS
TTTACAGGAACATCTGTTAT+GGG 0.408859 2_1:+47111409 Msa0209370:CDS
GCTGCAGTAATAAAGTTTAG+TGG 0.421311 2_1:+47112925 Msa0209370:CDS
AGGAAATGGGTGGGAGAGAA+TGG 0.421650 2_1:-47110071 None:intergenic
AATCATCATGCTTAGTAATT+GGG 0.426244 2_1:-47110357 None:intergenic
TTTATTGGAAGTATTCAAAC+AGG 0.429041 2_1:+47111753 Msa0209370:CDS
CGCTCCAATATCATTAAAGA+TGG 0.429781 2_1:+47112991 Msa0209370:CDS
GCTTCCATGGAAACCAGAAT+TGG 0.431262 2_1:+47111384 Msa0209370:CDS
TCGAACATGGTCCTTCATAA+TGG 0.440473 2_1:+47113062 Msa0209370:CDS
GTGGTGCAAGTTGTAGGAAA+TGG 0.442861 2_1:-47110085 None:intergenic
GTTAGCTTGAGAAAGGTAGA+AGG 0.445389 2_1:+47112895 Msa0209370:CDS
CGGAAAGTGGTGCAAGTTGT+AGG 0.450152 2_1:-47110091 None:intergenic
AGGGTAGTTGTGGATGTTGA+AGG 0.454523 2_1:-47110128 None:intergenic
CTTGCCCGTTACAATGATCC+AGG 0.455438 2_1:+47113039 Msa0209370:CDS
CCAAATATCAAATATTAAAA+CGG 0.467136 2_1:+47111919 Msa0209370:CDS
TGAAATTCATGCTGCTTCCA+TGG 0.477688 2_1:+47111371 Msa0209370:CDS
CAAATGGAGACAAGCTATCT+GGG 0.479821 2_1:+47112307 Msa0209370:CDS
TTCGCGAACAATATCCTCCA+TGG 0.485927 2_1:-47112953 None:intergenic
AAGACCAATTCTGGTTTCCA+TGG 0.488831 2_1:-47111388 None:intergenic
GGAGAGAATGGAAGTGGCCA+TGG 0.497885 2_1:-47110059 None:intergenic
GGAGGATATTGTTCGCGAAA+AGG 0.499867 2_1:+47112957 Msa0209370:CDS
TGGTGCAAGTTGTAGGAAAT+GGG 0.500255 2_1:-47110084 None:intergenic
TTCGTAGTAGTAGAAACAAA+TGG 0.502411 2_1:+47112291 Msa0209370:CDS
TTCGCAGCATACCATTATGA+AGG 0.511503 2_1:-47113073 None:intergenic
GACAAGCTATCTGGGAATAC+CGG 0.516068 2_1:+47112315 Msa0209370:CDS
TCGATGGCTTGAGTGAATAC+AGG 0.518542 2_1:-47112499 None:intergenic
AGAAACAGTTAGCTTGAGAA+AGG 0.518821 2_1:+47112888 Msa0209370:CDS
ATAAATTATCTTCAGATACA+AGG 0.522440 2_1:+47114401 Msa0209370:three_prime_UTR
TTTGTTTCTACTACTACGAA+TGG 0.522785 2_1:-47112288 None:intergenic
TCGACCTGGATCATTGTAAC+GGG 0.527359 2_1:-47113043 None:intergenic
GAAGAAGTGGAGGGTAGTTG+TGG 0.530493 2_1:-47110138 None:intergenic
GGAGGTTGGTCGCCGGAAAG+TGG 0.531539 2_1:-47110104 None:intergenic
TCGCGAACAATATCCTCCAT+GGG 0.547839 2_1:-47112952 None:intergenic
CATCGGTATCTTCTCTGCTG+TGG 0.557509 2_1:-47112470 None:intergenic
CGTGGTGGCTGGAGAAGAAG+TGG 0.560248 2_1:-47110151 None:intergenic
CATTAACAATGAAGTACTCA+TGG 0.566632 2_1:+47114254 Msa0209370:three_prime_UTR
CCCAGCAACATCATTAAAGC+CGG 0.567439 2_1:-47112334 None:intergenic
CTTATGAAATAACTACAAGA+TGG 0.569482 2_1:+47111338 Msa0209370:CDS
TGGATGTTGAAGGCGGAGGT+TGG 0.570197 2_1:-47110118 None:intergenic
GTTGTGGATGTTGAAGGCGG+AGG 0.572578 2_1:-47110122 None:intergenic
TGGGTGGGAGAGAATGGAAG+TGG 0.573642 2_1:-47110065 None:intergenic
CCGGCTTTAATGATGTTGCT+GGG 0.579992 2_1:+47112334 Msa0209370:CDS
TTCGACCTGGATCATTGTAA+CGG 0.580924 2_1:-47113044 None:intergenic
AAAGTTTAGTGGAAAACCCA+TGG 0.583126 2_1:+47112936 Msa0209370:CDS
ACAATGATCCAGGTCGAACA+TGG 0.586299 2_1:+47113049 Msa0209370:CDS
TGAAGGCGGAGGTTGGTCGC+CGG 0.586760 2_1:-47110111 None:intergenic
AAAACGGACAGCAAATTATG+AGG 0.586779 2_1:+47111935 Msa0209370:CDS
ATGAAGGACCATGTTCGACC+TGG 0.591864 2_1:-47113057 None:intergenic
TGCAAGTTGTAGGAAATGGG+TGG 0.597054 2_1:-47110081 None:intergenic
CACTTCTTCTCCAGCCACCA+CGG 0.597086 2_1:+47110152 Msa0209370:CDS
AATAGTGTACACTGTACAGT+AGG 0.597176 2_1:+47114522 Msa0209370:three_prime_UTR
TTTGGACAAGTCAATATCGA+TGG 0.598178 2_1:-47112515 None:intergenic
ACTAAGCATGATGATTTGAG+TGG 0.598452 2_1:+47110364 Msa0209370:CDS
GCAAGTTGTAGGAAATGGGT+GGG 0.599564 2_1:-47110080 None:intergenic
GCAAGCAAACAACCAGGCTG+AGG 0.606063 2_1:-47113021 None:intergenic
CATCAGACAAAGAAACAAAG+AGG 0.609686 2_1:+47112560 Msa0209370:CDS
GATGGTCTGAAACCTCAGCC+TGG 0.615097 2_1:+47113009 Msa0209370:CDS
CAGCATGAATTTCATAACCA+TGG 0.617626 2_1:-47111362 None:intergenic
CAATACCCTTATCATCAAAG+AGG 0.620697 2_1:-47110297 None:intergenic
ATATTAGCAAATAAGGTGCA+TGG 0.624531 2_1:+47114465 Msa0209370:three_prime_UTR
ATATATGACATATTCATACA+AGG 0.624779 2_1:+47114575 Msa0209370:three_prime_UTR
GTGAATACAGGAGTAGTCAT+CGG 0.628384 2_1:-47112487 None:intergenic
GTAGTTGTGGATGTTGAAGG+CGG 0.633641 2_1:-47110125 None:intergenic
CCCTTATCATCAAAGAGGTG+AGG 0.636487 2_1:-47110292 None:intergenic
AGCTTGAGAAAGGTAGAAGG+AGG 0.657758 2_1:+47112898 Msa0209370:CDS
TAACGGGCAAGCAAACAACC+AGG 0.667765 2_1:-47113027 None:intergenic
GGTGGCTGGAGAAGAAGTGG+AGG 0.668019 2_1:-47110148 None:intergenic
AATAACTACAAGATGGACCA+TGG 0.682550 2_1:+47111345 Msa0209370:CDS
GTGGCTGGAGAAGAAGTGGA+GGG 0.697700 2_1:-47110147 None:intergenic
GTTTAGTGGAAAACCCATGG+AGG 0.746638 2_1:+47112939 Msa0209370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATGTGATTTTTTTTA+CGG - chr2_1:47110183-47110202 None:intergenic 10.0%
!! TAAAAAAAATCACATTAAAT+GGG + chr2_1:47110183-47110202 Msa0209370:CDS 10.0%
!!! AATAAATAAATTAGTTTACA+TGG + chr2_1:47110607-47110626 Msa0209370:intron 10.0%
!! TTTAACCATATAAAATAATT+AGG - chr2_1:47113710-47113729 None:intergenic 10.0%
!!! TAATTATTTTATATGGTTAA+AGG + chr2_1:47113709-47113728 Msa0209370:intron 10.0%
!!! AATTATTTTATATGGTTAAA+GGG + chr2_1:47113710-47113729 Msa0209370:intron 10.0%
!! GTAAAAAAAATCACATTAAA+TGG + chr2_1:47110182-47110201 Msa0209370:CDS 15.0%
!! TTGTTTGTATAAAATATCAT+AGG - chr2_1:47110917-47110936 None:intergenic 15.0%
!!! TACTTTCATATTCATTTTTT+TGG + chr2_1:47110962-47110981 Msa0209370:intron 15.0%
!! ATAATATTGTATGAAAATCA+AGG - chr2_1:47111110-47111129 None:intergenic 15.0%
!!! TGATTTTCATACAATATTAT+AGG + chr2_1:47111110-47111129 Msa0209370:intron 15.0%
!!! TTATCTATGGTTTTAAATTT+TGG + chr2_1:47111496-47111515 Msa0209370:intron 15.0%
!!! CGTTTTAATATTTGATATTT+GGG - chr2_1:47111921-47111940 None:intergenic 15.0%
!! CCAAATATCAAATATTAAAA+CGG + chr2_1:47111919-47111938 Msa0209370:CDS 15.0%
!! ATTACATTAAAGAATTAAGA+GGG - chr2_1:47113922-47113941 None:intergenic 15.0%
!!! TTTTCAGCTTATTTGTATAT+AGG + chr2_1:47110567-47110586 Msa0209370:intron 20.0%
!! TTTCAGCTTATTTGTATATA+GGG + chr2_1:47110568-47110587 Msa0209370:intron 20.0%
!!! AAGCTATTTTTGTAACAAAA+TGG - chr2_1:47110729-47110748 None:intergenic 20.0%
!! AACAAGACATAAAAAAGTTA+AGG - chr2_1:47111281-47111300 None:intergenic 20.0%
!!! AATGACTATTTTTCATTTGA+AGG + chr2_1:47111730-47111749 Msa0209370:CDS 20.0%
!!! TTTTTCATTTGAAGGTTTAT+TGG + chr2_1:47111738-47111757 Msa0209370:CDS 20.0%
!!! CCGTTTTAATATTTGATATT+TGG - chr2_1:47111922-47111941 None:intergenic 20.0%
!! ATATCAAAAGTTAACACAAA+AGG + chr2_1:47112123-47112142 Msa0209370:intron 20.0%
!!! TGAATTCATTGTTTTTTTGA+TGG + chr2_1:47112242-47112261 Msa0209370:intron 20.0%
!! TATAACAAAAAGAAAATGCT+CGG + chr2_1:47113151-47113170 Msa0209370:intron 20.0%
!!! TTTTTTTTTACTAGTCTCTA+AGG - chr2_1:47113266-47113285 None:intergenic 20.0%
!! TTAGAGACTAGTAAAAAAAA+AGG + chr2_1:47113265-47113284 Msa0209370:intron 20.0%
!! TAGAGACTAGTAAAAAAAAA+GGG + chr2_1:47113266-47113285 Msa0209370:intron 20.0%
!! TTAGAGACTAGTAAAAAAAA+GGG + chr2_1:47113265-47113284 Msa0209370:intron 20.0%
!!! ACTAGCCTAATTATTTTATA+TGG + chr2_1:47113702-47113721 Msa0209370:intron 20.0%
!! CATTACATTAAAGAATTAAG+AGG - chr2_1:47113923-47113942 None:intergenic 20.0%
!!! TATGGATTTTCTTAGAATTT+GGG + chr2_1:47113948-47113967 Msa0209370:intron 20.0%
!! CTTAAAATTACTATATAAGC+TGG - chr2_1:47114025-47114044 None:intergenic 20.0%
!!! CAGCTTATATAGTAATTTTA+AGG + chr2_1:47114023-47114042 Msa0209370:intron 20.0%
!! ATAAATTATCTTCAGATACA+AGG + chr2_1:47114401-47114420 Msa0209370:three_prime_UTR 20.0%
!! AAAAGACATATTAGCAAATA+AGG + chr2_1:47114458-47114477 Msa0209370:three_prime_UTR 20.0%
!!! TTTTTTTACAATTTGATGAG+TGG - chr2_1:47114501-47114520 None:intergenic 20.0%
!! ATATATGACATATTCATACA+AGG + chr2_1:47114575-47114594 Msa0209370:three_prime_UTR 20.0%
! AATCATCATGCTTAGTAATT+GGG - chr2_1:47110360-47110379 None:intergenic 25.0%
! AAATCATCATGCTTAGTAAT+TGG - chr2_1:47110361-47110380 None:intergenic 25.0%
! TAACTTTATAGAGACAACTT+AGG + chr2_1:47110531-47110550 Msa0209370:intron 25.0%
! ATACAAATAAGCTGAAAACA+TGG - chr2_1:47110565-47110584 None:intergenic 25.0%
! TTAACCACTTCTAGTATTAA+CGG - chr2_1:47110770-47110789 None:intergenic 25.0%
! GAATGTATAATCACATATGT+TGG - chr2_1:47111082-47111101 None:intergenic 25.0%
!!! TTATGTCTTGTTTGTTCAAT+TGG + chr2_1:47111289-47111308 Msa0209370:intron 25.0%
!! CATCTTGTAGTTATTTCATA+AGG - chr2_1:47111340-47111359 None:intergenic 25.0%
! CTTATGAAATAACTACAAGA+TGG + chr2_1:47111338-47111357 Msa0209370:CDS 25.0%
!!! TTTTAAATTTTGGTTGCAGT+CGG + chr2_1:47111506-47111525 Msa0209370:intron 25.0%
!! ATTGGTGTTTATAAATGAAG+TGG + chr2_1:47111641-47111660 Msa0209370:intron 25.0%
! TAAATGAAGTGGTATTATGT+TGG + chr2_1:47111652-47111671 Msa0209370:intron 25.0%
!!! TTTATTGGAAGTATTCAAAC+AGG + chr2_1:47111753-47111772 Msa0209370:CDS 25.0%
!! GTTAACTTTTGATATGTTTG+TGG - chr2_1:47112118-47112137 None:intergenic 25.0%
!!! TTGAAGTAGTTTTATAATGG+TGG - chr2_1:47112168-47112187 None:intergenic 25.0%
!!! GACTTGAAGTAGTTTTATAA+TGG - chr2_1:47112171-47112190 None:intergenic 25.0%
! TACTTCAAGTCAAAAACAAA+AGG + chr2_1:47112180-47112199 Msa0209370:intron 25.0%
! ACAAAAGGATGTATCTTATA+TGG + chr2_1:47112195-47112214 Msa0209370:intron 25.0%
!!! TGTTTTTTTGATGGTATAAC+AGG + chr2_1:47112251-47112270 Msa0209370:intron 25.0%
! TTCTTTACTAAGCATATGTT+TGG - chr2_1:47112773-47112792 None:intergenic 25.0%
! AACATATGCTTAGTAAAGAA+AGG + chr2_1:47112773-47112792 Msa0209370:intron 25.0%
! CATGCATATTCAAAATCAAA+TGG - chr2_1:47113115-47113134 None:intergenic 25.0%
!!! CATTTGATTTTGAATATGCA+TGG + chr2_1:47113113-47113132 Msa0209370:intron 25.0%
!!! CTTTTTTTTACTAGTCTCTA+AGG - chr2_1:47113387-47113406 None:intergenic 25.0%
! CTTAGAGACTAGTAAAAAAA+AGG + chr2_1:47113264-47113283 Msa0209370:intron 25.0%
! ATGAATACTAATCTCTAATG+GGG - chr2_1:47113551-47113570 None:intergenic 25.0%
! CATGAATACTAATCTCTAAT+GGG - chr2_1:47113552-47113571 None:intergenic 25.0%
! ACATGAATACTAATCTCTAA+TGG - chr2_1:47113553-47113572 None:intergenic 25.0%
! AAACTACTGCAAATTAATCT+TGG - chr2_1:47113653-47113672 None:intergenic 25.0%
! GTAGAAAAACTAAACCATAA+TGG - chr2_1:47113860-47113879 None:intergenic 25.0%
!! CAAATTCTAAGAAAATCCAT+AGG - chr2_1:47113949-47113968 None:intergenic 25.0%
!! CTATGGATTTTCTTAGAATT+TGG + chr2_1:47113947-47113966 Msa0209370:intron 25.0%
!!! ATTTTCTTAGAATTTGGGTT+GGG + chr2_1:47113953-47113972 Msa0209370:intron 25.0%
!! TTTTACATGCCTACTATTTT+TGG - chr2_1:47114441-47114460 None:intergenic 25.0%
TTCAACTAAGCTCAGATTAA+TGG - chr2_1:47110209-47110228 None:intergenic 30.0%
CGATAAAAAAAACCGTAAGA+TGG - chr2_1:47110476-47110495 None:intergenic 30.0%
ATTTGTATATAGGGTCTGTT+TGG + chr2_1:47110577-47110596 Msa0209370:intron 30.0%
! GTTGAACTAGCTTATAAACT+AGG - chr2_1:47110649-47110668 None:intergenic 30.0%
! GTAATGATTTGCACACATAA+CGG - chr2_1:47110671-47110690 None:intergenic 30.0%
TAACCACTTCTAGTATTAAC+GGG - chr2_1:47110769-47110788 None:intergenic 30.0%
!! TAATAGGCTGAAACTTGTTT+TGG - chr2_1:47110806-47110825 None:intergenic 30.0%
GTTACTATGAGATATAGACA+CGG - chr2_1:47111165-47111184 None:intergenic 30.0%
TTTACAGGAACATCTGTTAT+GGG + chr2_1:47111409-47111428 Msa0209370:CDS 30.0%
!!! TACAAAACTTGCCATTTTCT+GGG - chr2_1:47111441-47111460 None:intergenic 30.0%
!!! TTTAAATTTTGGTTGCAGTC+GGG + chr2_1:47111507-47111526 Msa0209370:intron 30.0%
AAGAGGAAAAAAAATGCCAA+AGG - chr2_1:47111807-47111826 None:intergenic 30.0%
!! TTTTGGAAGACTTACAAAAG+AGG - chr2_1:47111824-47111843 None:intergenic 30.0%
! TAACAACTCACAGCAAATTT+TGG - chr2_1:47111841-47111860 None:intergenic 30.0%
! TAAAGGCACAATCATCAAAA+AGG - chr2_1:47112084-47112103 None:intergenic 30.0%
!! TTTGTTTCTACTACTACGAA+TGG - chr2_1:47112291-47112310 None:intergenic 30.0%
TTCGTAGTAGTAGAAACAAA+TGG + chr2_1:47112291-47112310 Msa0209370:CDS 30.0%
TGTTAAAAATCTTCATTCGC+AGG + chr2_1:47112428-47112447 Msa0209370:intron 30.0%
TTCATTCGCAGGTATATATT+TGG + chr2_1:47112439-47112458 Msa0209370:intron 30.0%
AACTATTTGGATTGAGACTT+TGG - chr2_1:47112536-47112555 None:intergenic 30.0%
! AGTAAAGAAAGGAAGTTTTG+TGG + chr2_1:47112784-47112803 Msa0209370:intron 30.0%
!! GAAGTTTTGTGGAAGAATTA+GGG + chr2_1:47112795-47112814 Msa0209370:intron 30.0%
! ACTGTTTCTTGATTAGGATT+TGG - chr2_1:47112877-47112896 None:intergenic 30.0%
! AAGCTAACTGTTTCTTGATT+AGG - chr2_1:47112883-47112902 None:intergenic 30.0%
CAGACCATCTTTAATGATAT+TGG - chr2_1:47112998-47113017 None:intergenic 30.0%
AACAACATACTGTAAGATCT+TGG - chr2_1:47113243-47113262 None:intergenic 30.0%
TTGTTGCAAAAAACAGTGTA+AGG - chr2_1:47113340-47113359 None:intergenic 30.0%
AACAACATACTGTAAGATCT+TGG - chr2_1:47113243-47113262 None:intergenic 30.0%
TGAAAACAGACTATTGTGTA+AGG - chr2_1:47113460-47113479 None:intergenic 30.0%
! TTGTCTAGAATTGTTAGGTT+AGG - chr2_1:47113780-47113799 None:intergenic 30.0%
! ATGGATTTGAAGTTCCATTA+TGG + chr2_1:47113843-47113862 Msa0209370:intron 30.0%
! GATTTTCTTAGAATTTGGGT+TGG + chr2_1:47113952-47113971 Msa0209370:intron 30.0%
TATCTCAGCTCCTATAAAAT+CGG + chr2_1:47113978-47113997 Msa0209370:intron 30.0%
AGCAGACAAATATCAAATTG+AGG - chr2_1:47114141-47114160 None:intergenic 30.0%
! CATTAACAATGAAGTACTCA+TGG + chr2_1:47114254-47114273 Msa0209370:three_prime_UTR 30.0%
!!! AGATGGAATTTTTTACTGAC+TGG - chr2_1:47114298-47114317 None:intergenic 30.0%
!! TGGGAAAATGACTTTTAAGA+TGG - chr2_1:47114315-47114334 None:intergenic 30.0%
GACATCAATATGGAAAAACT+TGG - chr2_1:47114342-47114361 None:intergenic 30.0%
AACAGAGAATGACATCAATA+TGG - chr2_1:47114352-47114371 None:intergenic 30.0%
ATATTAGCAAATAAGGTGCA+TGG + chr2_1:47114465-47114484 Msa0209370:three_prime_UTR 30.0%
CAATACCCTTATCATCAAAG+AGG - chr2_1:47110300-47110319 None:intergenic 35.0%
ACTAAGCATGATGATTTGAG+TGG + chr2_1:47110364-47110383 Msa0209370:CDS 35.0%
GTTTCTCTCTTTCCATCTTA+CGG + chr2_1:47110461-47110480 Msa0209370:intron 35.0%
TAACCCGTTAATACTAGAAG+TGG + chr2_1:47110763-47110782 Msa0209370:intron 35.0%
! CTATGTGTCACTATCGTATT+CGG + chr2_1:47111136-47111155 Msa0209370:intron 35.0%
TGGTAGAACAAACGCTTATT+TGG + chr2_1:47111222-47111241 Msa0209370:intron 35.0%
AATAACTACAAGATGGACCA+TGG + chr2_1:47111345-47111364 Msa0209370:CDS 35.0%
CAGCATGAATTTCATAACCA+TGG - chr2_1:47111365-47111384 None:intergenic 35.0%
!! AAACCAGAATTGGTCTTTAC+AGG + chr2_1:47111394-47111413 Msa0209370:CDS 35.0%
CTTTACAGGAACATCTGTTA+TGG + chr2_1:47111408-47111427 Msa0209370:CDS 35.0%
!!! CTACAAAACTTGCCATTTTC+TGG - chr2_1:47111442-47111461 None:intergenic 35.0%
GATAGTTGGAAATTACCACA+TGG - chr2_1:47111465-47111484 None:intergenic 35.0%
AATTTCCAACTATCCAGTAC+TGG + chr2_1:47111471-47111490 Msa0209370:intron 35.0%
! ATTGATAACACTAGTCATCG+AGG - chr2_1:47111623-47111642 None:intergenic 35.0%
CGATGACTAGTGTTATCAAT+TGG + chr2_1:47111623-47111642 Msa0209370:intron 35.0%
TTACTCTTGATGTATGCCTT+TGG + chr2_1:47111788-47111807 Msa0209370:intron 35.0%
! GATTTGACATTTTGCAGTTG+AGG + chr2_1:47111868-47111887 Msa0209370:intron 35.0%
GATTTACAAGACACCAGATT+TGG + chr2_1:47111890-47111909 Msa0209370:CDS 35.0%
TATTTGGGTGATTCCAAATC+TGG - chr2_1:47111906-47111925 None:intergenic 35.0%
AAAACGGACAGCAAATTATG+AGG + chr2_1:47111935-47111954 Msa0209370:CDS 35.0%
CACTATGTTCATGAATGAGA+AGG - chr2_1:47111965-47111984 None:intergenic 35.0%
GCATGAATGCTCATATCAAA+AGG + chr2_1:47112049-47112068 Msa0209370:intron 35.0%
! TTGTGGTGCAGTTTTCATAA+AGG - chr2_1:47112101-47112120 None:intergenic 35.0%
AATTTGTCGCTCTCTATTTC+AGG + chr2_1:47112394-47112413 Msa0209370:intron 35.0%
TTTGGACAAGTCAATATCGA+TGG - chr2_1:47112518-47112537 None:intergenic 35.0%
TGTCTGATGGAAGAACTATT+TGG - chr2_1:47112549-47112568 None:intergenic 35.0%
! CTCTTTGTTTCTTTGTCTGA+TGG - chr2_1:47112562-47112581 None:intergenic 35.0%
CATCAGACAAAGAAACAAAG+AGG + chr2_1:47112560-47112579 Msa0209370:CDS 35.0%
CACAAACATGGAAAACAAAC+AGG - chr2_1:47112659-47112678 None:intergenic 35.0%
AAGCGGGAAATCAGAAATAT+AGG - chr2_1:47112693-47112712 None:intergenic 35.0%
! AACCCTTTATTTGTCTGAAG+CGG - chr2_1:47112710-47112729 None:intergenic 35.0%
!! AAATAAAGGGTTAGTTGCCT+AGG + chr2_1:47112718-47112737 Msa0209370:intron 35.0%
!! AATAAAGGGTTAGTTGCCTA+GGG + chr2_1:47112719-47112738 Msa0209370:intron 35.0%
!! GGAAGTTTTGTGGAAGAATT+AGG + chr2_1:47112794-47112813 Msa0209370:intron 35.0%
! AGAAACAGTTAGCTTGAGAA+AGG + chr2_1:47112888-47112907 Msa0209370:CDS 35.0%
GCTGCAGTAATAAAGTTTAG+TGG + chr2_1:47112925-47112944 Msa0209370:CDS 35.0%
AAAGTTTAGTGGAAAACCCA+TGG + chr2_1:47112936-47112955 Msa0209370:CDS 35.0%
CGCTCCAATATCATTAAAGA+TGG + chr2_1:47112991-47113010 Msa0209370:CDS 35.0%
TCAAATGGCAACAATCAAGA+AGG - chr2_1:47113100-47113119 None:intergenic 35.0%
TTAGGTTAGGTTCAACAAGT+AGG - chr2_1:47113767-47113786 None:intergenic 35.0%
! CCATCTTGTCTAGAATTGTT+AGG - chr2_1:47113785-47113804 None:intergenic 35.0%
CCTAACAATTCTAGACAAGA+TGG + chr2_1:47113782-47113801 Msa0209370:intron 35.0%
CATGCATGTAAGAAGTAGTT+TGG - chr2_1:47113816-47113835 None:intergenic 35.0%
CTTTAATGTAATGCTGCCTA+TGG + chr2_1:47113930-47113949 Msa0209370:intron 35.0%
! GATTTTATAGGAGCTGAGAT+AGG - chr2_1:47113979-47113998 None:intergenic 35.0%
CTGTGGGACAATTATAATTG+GGG - chr2_1:47114085-47114104 None:intergenic 35.0%
CCTGTGGGACAATTATAATT+GGG - chr2_1:47114086-47114105 None:intergenic 35.0%
TCCTGTGGGACAATTATAAT+TGG - chr2_1:47114087-47114106 None:intergenic 35.0%
TCAAAATCCATATCTCCTGT+GGG - chr2_1:47114101-47114120 None:intergenic 35.0%
ATCAAAATCCATATCTCCTG+TGG - chr2_1:47114102-47114121 None:intergenic 35.0%
CATTTGCTTCATTTGTCTTG+TGG + chr2_1:47114171-47114190 Msa0209370:intron 35.0%
TGTGGTTTATGACATTGAAG+AGG + chr2_1:47114189-47114208 Msa0209370:intron 35.0%
!! TATGGAAAAACTTGGTGTGT+GGG - chr2_1:47114334-47114353 None:intergenic 35.0%
!! ATATGGAAAAACTTGGTGTG+TGG - chr2_1:47114335-47114354 None:intergenic 35.0%
! TGTTTGGAGCCAAAAATAGT+AGG + chr2_1:47114429-47114448 Msa0209370:three_prime_UTR 35.0%
AAATAAGGTGCATGGTCATT+AGG + chr2_1:47114473-47114492 Msa0209370:three_prime_UTR 35.0%
AATAGTGTACACTGTACAGT+AGG + chr2_1:47114522-47114541 Msa0209370:three_prime_UTR 35.0%
GTAGGCTTTCACTTATTCTT+TGG + chr2_1:47114540-47114559 Msa0209370:three_prime_UTR 35.0%
TGGTGCAAGTTGTAGGAAAT+GGG - chr2_1:47110087-47110106 None:intergenic 40.0%
!!! TTTTTTTTACGGTGTCTCCG+TGG - chr2_1:47110172-47110191 None:intergenic 40.0%
! TCCTCACCTCTTTGATGATA+AGG + chr2_1:47110291-47110310 Msa0209370:CDS 40.0%
! CCTCACCTCTTTGATGATAA+GGG + chr2_1:47110292-47110311 Msa0209370:CDS 40.0%
ATGGAAAGAGAGAAACAGAC+CGG - chr2_1:47110457-47110476 None:intergenic 40.0%
TTCAGCCTATTAACGTGTGT+TGG + chr2_1:47110814-47110833 Msa0209370:intron 40.0%
ACTGTCCAACACACGTTAAT+AGG - chr2_1:47110822-47110841 None:intergenic 40.0%
TATTAACGTGTGTTGGACAG+TGG + chr2_1:47110821-47110840 Msa0209370:intron 40.0%
ATTAACGTGTGTTGGACAGT+GGG + chr2_1:47110822-47110841 Msa0209370:intron 40.0%
!! GACTTATGATCTCTGAAGCA+CGG - chr2_1:47110870-47110889 None:intergenic 40.0%
! CTGATTGAGTTGCTATAGAC+AGG + chr2_1:47111313-47111332 Msa0209370:intron 40.0%
! TGAAATTCATGCTGCTTCCA+TGG + chr2_1:47111371-47111390 Msa0209370:CDS 40.0%
!! AAGACCAATTCTGGTTTCCA+TGG - chr2_1:47111391-47111410 None:intergenic 40.0%
GTTCCTGTAAAGACCAATTC+TGG - chr2_1:47111400-47111419 None:intergenic 40.0%
ATGGGTGTTAACCCAGAAAA+TGG + chr2_1:47111427-47111446 Msa0209370:CDS 40.0%
! TAACACCAGTACTGGATAGT+TGG - chr2_1:47111479-47111498 None:intergenic 40.0%
!! TCCAGTACTGGTGTTATCTA+TGG + chr2_1:47111483-47111502 Msa0209370:intron 40.0%
ACCATAGATAACACCAGTAC+TGG - chr2_1:47111487-47111506 None:intergenic 40.0%
ATGCGACCTTAATTGCAGTA+GGG + chr2_1:47111574-47111593 Msa0209370:intron 40.0%
ATCTGACCCTACTGCAATTA+AGG - chr2_1:47111583-47111602 None:intergenic 40.0%
TTCGTAATCCTCAATTTCCC+AGG + chr2_1:47111684-47111703 Msa0209370:intron 40.0%
! CTCAATTTCCCAGGACTTTT+GGG + chr2_1:47111693-47111712 Msa0209370:intron 40.0%
TAGTGAATCCCAAAAGTCCT+GGG - chr2_1:47111704-47111723 None:intergenic 40.0%
TTAGTGAATCCCAAAAGTCC+TGG - chr2_1:47111705-47111724 None:intergenic 40.0%
ACAAATGGAGACAAGCTATC+TGG + chr2_1:47112306-47112325 Msa0209370:CDS 40.0%
CAAATGGAGACAAGCTATCT+GGG + chr2_1:47112307-47112326 Msa0209370:CDS 40.0%
CTTTAATGATGTTGCTGGGT+AGG + chr2_1:47112338-47112357 Msa0209370:intron 40.0%
GTGAATACAGGAGTAGTCAT+CGG - chr2_1:47112490-47112509 None:intergenic 40.0%
GTTCCAAGAGATACATGTCT+TGG + chr2_1:47112626-47112645 Msa0209370:intron 40.0%
AAGCCAAGACATGTATCTCT+TGG - chr2_1:47112632-47112651 None:intergenic 40.0%
AGAGATACATGTCTTGGCTT+AGG + chr2_1:47112632-47112651 Msa0209370:intron 40.0%
GGGAAATCAGAAATATAGGC+AGG - chr2_1:47112689-47112708 None:intergenic 40.0%
TTCCCGCTTCAGACAAATAA+AGG + chr2_1:47112704-47112723 Msa0209370:intron 40.0%
TCCCGCTTCAGACAAATAAA+GGG + chr2_1:47112705-47112724 Msa0209370:intron 40.0%
! ACCCTTTATTTGTCTGAAGC+GGG - chr2_1:47112709-47112728 None:intergenic 40.0%
! GTTAGCTTGAGAAAGGTAGA+AGG + chr2_1:47112895-47112914 Msa0209370:CDS 40.0%
TTCGACCTGGATCATTGTAA+CGG - chr2_1:47113047-47113066 None:intergenic 40.0%
TCGAACATGGTCCTTCATAA+TGG + chr2_1:47113062-47113081 Msa0209370:CDS 40.0%
TTCGCAGCATACCATTATGA+AGG - chr2_1:47113076-47113095 None:intergenic 40.0%
AGTAAAAAAAAAGGGCAGCC+CGG + chr2_1:47113274-47113293 Msa0209370:intron 40.0%
CGTACAATACACCAATTGGT+GGG - chr2_1:47113314-47113333 None:intergenic 40.0%
TAGTAAAAAAAAGGGCAGCC+CGG + chr2_1:47113394-47113413 Msa0209370:intron 40.0%
CGTACAATACACCAATTGGT+GGG - chr2_1:47113314-47113333 None:intergenic 40.0%
GTTGTTGTCAAGTGACTGAA+AGG - chr2_1:47113508-47113527 None:intergenic 40.0%
ACAACTTTACCGTTATGCCA+AGG + chr2_1:47113523-47113542 Msa0209370:intron 40.0%
AGAAGTGATTCCCTGATAGA+TGG + chr2_1:47113605-47113624 Msa0209370:intron 40.0%
GAAGTGATTCCCTGATAGAT+GGG + chr2_1:47113606-47113625 Msa0209370:intron 40.0%
GGAACTTCAAATCCATCAAG+AGG - chr2_1:47113839-47113858 None:intergenic 40.0%
!! GCTCTACAAGCCGATTTTAT+AGG - chr2_1:47113991-47114010 None:intergenic 40.0%
CCCAATTATAATTGTCCCAC+AGG + chr2_1:47114083-47114102 Msa0209370:intron 40.0%
TAATTGTCCCACAGGAGATA+TGG + chr2_1:47114091-47114110 Msa0209370:intron 40.0%
! AGAGGAATGAAGTGCTCATT+TGG + chr2_1:47114207-47114226 Msa0209370:intron 40.0%
TTGGCTAGATGACTTCTCAT+TGG + chr2_1:47114226-47114245 Msa0209370:CDS 40.0%
CAGATACAAGGAGTGATGTT+TGG + chr2_1:47114413-47114432 Msa0209370:three_prime_UTR 40.0%
GCAAGTTGTAGGAAATGGGT+GGG - chr2_1:47110083-47110102 None:intergenic 45.0%
TGCAAGTTGTAGGAAATGGG+TGG - chr2_1:47110084-47110103 None:intergenic 45.0%
GTGGTGCAAGTTGTAGGAAA+TGG - chr2_1:47110088-47110107 None:intergenic 45.0%
CTACAACTTGCACCACTTTC+CGG + chr2_1:47110092-47110111 Msa0209370:CDS 45.0%
GTAGTTGTGGATGTTGAAGG+CGG - chr2_1:47110128-47110147 None:intergenic 45.0%
AGGGTAGTTGTGGATGTTGA+AGG - chr2_1:47110131-47110150 None:intergenic 45.0%
CCCTTATCATCAAAGAGGTG+AGG - chr2_1:47110295-47110314 None:intergenic 45.0%
TGGGACACACTTAATGCTAG+TGG + chr2_1:47110841-47110860 Msa0209370:intron 45.0%
GCTTCCATGGAAACCAGAAT+TGG + chr2_1:47111384-47111403 Msa0209370:CDS 45.0%
!! TGGCAAGTTTTGTAGCCATG+TGG + chr2_1:47111447-47111466 Msa0209370:CDS 45.0%
GATGCGACCTTAATTGCAGT+AGG + chr2_1:47111573-47111592 Msa0209370:intron 45.0%
CCAAAAGTCCTGGGAAATTG+AGG - chr2_1:47111695-47111714 None:intergenic 45.0%
! CCTCAATTTCCCAGGACTTT+TGG + chr2_1:47111692-47111711 Msa0209370:intron 45.0%
GACAAGCTATCTGGGAATAC+CGG + chr2_1:47112315-47112334 Msa0209370:CDS 45.0%
! ACCGGCTTTAATGATGTTGC+TGG + chr2_1:47112333-47112352 Msa0209370:CDS 45.0%
CCCAGCAACATCATTAAAGC+CGG - chr2_1:47112337-47112356 None:intergenic 45.0%
! CCGGCTTTAATGATGTTGCT+GGG + chr2_1:47112334-47112353 Msa0209370:CDS 45.0%
TCGATGGCTTGAGTGAATAC+AGG - chr2_1:47112502-47112521 None:intergenic 45.0%
CAGAAATATAGGCAGGTGCA+AGG - chr2_1:47112682-47112701 None:intergenic 45.0%
CTGTTCATTCTTGCATCCCT+AGG - chr2_1:47112738-47112757 None:intergenic 45.0%
AGCTTGAGAAAGGTAGAAGG+AGG + chr2_1:47112898-47112917 Msa0209370:CDS 45.0%
GTTTAGTGGAAAACCCATGG+AGG + chr2_1:47112939-47112958 Msa0209370:CDS 45.0%
TCGCGAACAATATCCTCCAT+GGG - chr2_1:47112955-47112974 None:intergenic 45.0%
TTCGCGAACAATATCCTCCA+TGG - chr2_1:47112956-47112975 None:intergenic 45.0%
GGAGGATATTGTTCGCGAAA+AGG + chr2_1:47112957-47112976 Msa0209370:CDS 45.0%
TCGACCTGGATCATTGTAAC+GGG - chr2_1:47113046-47113065 None:intergenic 45.0%
ACAATGATCCAGGTCGAACA+TGG + chr2_1:47113049-47113068 Msa0209370:CDS 45.0%
!!! GCCAGAGCCTTGTTTTCTAA+GGG + chr2_1:47113173-47113192 Msa0209370:intron 45.0%
!!! CCAGAGCCTTGTTTTCTAAG+GGG + chr2_1:47113174-47113193 Msa0209370:intron 45.0%
GTCACTCCCCTTAGAAAACA+AGG - chr2_1:47113183-47113202 None:intergenic 45.0%
GTAAAAAAAAAGGGCAGCCC+GGG + chr2_1:47113275-47113294 Msa0209370:intron 45.0%
GCGTACAATACACCAATTGG+TGG - chr2_1:47113315-47113334 None:intergenic 45.0%
GCTGCGTACAATACACCAAT+TGG - chr2_1:47113318-47113337 None:intergenic 45.0%
AGTAAAAAAAAGGGCAGCCC+GGG + chr2_1:47113395-47113414 Msa0209370:intron 45.0%
GCGTACAATACACCAATTGG+TGG - chr2_1:47113315-47113334 None:intergenic 45.0%
GCTGCGTACAATACACCAAT+TGG - chr2_1:47113318-47113337 None:intergenic 45.0%
TCAAGTGACTGAAAGGTCAC+GGG - chr2_1:47113501-47113520 None:intergenic 45.0%
GTCAAGTGACTGAAAGGTCA+CGG - chr2_1:47113502-47113521 None:intergenic 45.0%
TAATCTCTAATGGGGAGCCT+TGG - chr2_1:47113543-47113562 None:intergenic 45.0%
CTGCTCTAACCCATCTATCA+GGG - chr2_1:47113618-47113637 None:intergenic 45.0%
TCTGCTCTAACCCATCTATC+AGG - chr2_1:47113619-47113638 None:intergenic 45.0%
CAAGTAGGACTGATCACAAG+TGG - chr2_1:47113752-47113771 None:intergenic 45.0%
CTTACATGCATGCCTCTTGA+TGG + chr2_1:47113824-47113843 Msa0209370:intron 45.0%
!! TAAAATCGGCTTGTAGAGCG+AGG + chr2_1:47113992-47114011 Msa0209370:intron 45.0%
!! AAAATCGGCTTGTAGAGCGA+GGG + chr2_1:47113993-47114012 Msa0209370:intron 45.0%
!!! TTGTATAATTTTTTTTTTTT+TGG + chr2_1:47111202-47111221 Msa0209370:intron 5.0%
AGGAAATGGGTGGGAGAGAA+TGG - chr2_1:47110074-47110093 None:intergenic 50.0%
CGGAAAGTGGTGCAAGTTGT+AGG - chr2_1:47110094-47110113 None:intergenic 50.0%
GAAGAAGTGGAGGGTAGTTG+TGG - chr2_1:47110141-47110160 None:intergenic 50.0%
! TTTTTACGGTGTCTCCGTGG+TGG - chr2_1:47110169-47110188 None:intergenic 50.0%
AGCCTCAGTTTCAGCTGCAT+TGG + chr2_1:47110425-47110444 Msa0209370:intron 50.0%
GCCTCAGTTTCAGCTGCATT+GGG + chr2_1:47110426-47110445 Msa0209370:intron 50.0%
TCAGCTGCATTGGGCTAAAC+CGG + chr2_1:47110435-47110454 Msa0209370:intron 50.0%
CATTACCACGTGTCGTACAC+TGG - chr2_1:47111041-47111060 None:intergenic 50.0%
CATCGGTATCTTCTCTGCTG+TGG - chr2_1:47112473-47112492 None:intergenic 50.0%
! TAACGGGCAAGCAAACAACC+AGG - chr2_1:47113030-47113049 None:intergenic 50.0%
CTTGCCCGTTACAATGATCC+AGG + chr2_1:47113039-47113058 Msa0209370:CDS 50.0%
ATGAAGGACCATGTTCGACC+TGG - chr2_1:47113060-47113079 None:intergenic 50.0%
!!! GGCCAGAGCCTTGTTTTCTA+AGG + chr2_1:47113172-47113191 Msa0209370:intron 50.0%
CCCCTTAGAAAACAAGGCTC+TGG - chr2_1:47113177-47113196 None:intergenic 50.0%
AATGGGGAGCCTTGGCATAA+CGG - chr2_1:47113535-47113554 None:intergenic 50.0%
CTGATCACAAGTGGTCTGTC+TGG - chr2_1:47113743-47113762 None:intergenic 50.0%
TGGGTGGGAGAGAATGGAAG+TGG - chr2_1:47110068-47110087 None:intergenic 55.0%
TGGATGTTGAAGGCGGAGGT+TGG - chr2_1:47110121-47110140 None:intergenic 55.0%
GTTGTGGATGTTGAAGGCGG+AGG - chr2_1:47110125-47110144 None:intergenic 55.0%
GTGGCTGGAGAAGAAGTGGA+GGG - chr2_1:47110150-47110169 None:intergenic 55.0%
CACTTCTTCTCCAGCCACCA+CGG + chr2_1:47110152-47110171 Msa0209370:CDS 55.0%
GCCCAATGCAGCTGAAACTG+AGG - chr2_1:47110430-47110449 None:intergenic 55.0%
CATGTCCAGTGTACGACACG+TGG + chr2_1:47111033-47111052 Msa0209370:intron 55.0%
GCAGGTGCAAGGCACAAACA+TGG - chr2_1:47112671-47112690 None:intergenic 55.0%
! GATGGTCTGAAACCTCAGCC+TGG + chr2_1:47113009-47113028 Msa0209370:CDS 55.0%
GCAAGCAAACAACCAGGCTG+AGG - chr2_1:47113024-47113043 None:intergenic 55.0%
CAATTGGTGGGAGCCTTTCC+AGG - chr2_1:47113302-47113321 None:intergenic 55.0%
CTGGAAAGGCTCCCACCAAT+TGG + chr2_1:47113300-47113319 Msa0209370:intron 55.0%
CAATTGGTGGGAGCCTTTCC+AGG - chr2_1:47113302-47113321 None:intergenic 55.0%
CTGGAAAGGCTCCCACCAAT+TGG + chr2_1:47113300-47113319 Msa0209370:intron 55.0%
GGTGGCTGGAGAAGAAGTGG+AGG - chr2_1:47110151-47110170 None:intergenic 60.0%
CGTGGTGGCTGGAGAAGAAG+TGG - chr2_1:47110154-47110173 None:intergenic 60.0%
! GGAGGTTGGTCGCCGGAAAG+TGG - chr2_1:47110107-47110126 None:intergenic 65.0%
! TGAAGGCGGAGGTTGGTCGC+CGG - chr2_1:47110114-47110133 None:intergenic 65.0%
TACGGTGTCTCCGTGGTGGC+TGG - chr2_1:47110165-47110184 None:intergenic 65.0%
AAAAAGGGCAGCCCGGGTCC+TGG + chr2_1:47113281-47113300 Msa0209370:intron 65.0%
TGGGAGCCTTTCCAGGACCC+GGG - chr2_1:47113295-47113314 None:intergenic 65.0%
GTGGGAGCCTTTCCAGGACC+CGG - chr2_1:47113296-47113315 None:intergenic 65.0%
AAAAAGGGCAGCCCGGGTCC+TGG + chr2_1:47113281-47113300 Msa0209370:intron 65.0%
TGGGAGCCTTTCCAGGACCC+GGG - chr2_1:47113295-47113314 None:intergenic 65.0%
GTGGGAGCCTTTCCAGGACC+CGG - chr2_1:47113296-47113315 None:intergenic 65.0%
GGGCAGCCCGGGTCCTGGAA+AGG + chr2_1:47113286-47113305 Msa0209370:intron 75.0%
GGGCAGCCCGGGTCCTGGAA+AGG + chr2_1:47113286-47113305 Msa0209370:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 47110061 47114632 47110061 ID=Msa0209370;Name=Msa0209370
chr2_1 mRNA 47110061 47114632 47110061 ID=Msa0209370-mRNA-1;Parent=Msa0209370;Name=Msa0209370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.66|1|0.75|0.55|9|379|354
chr2_1 exon 47110061 47110222 47110061 ID=Msa0209370-mRNA-1:exon:13372;Parent=Msa0209370-mRNA-1
chr2_1 exon 47110232 47110385 47110232 ID=Msa0209370-mRNA-1:exon:13373;Parent=Msa0209370-mRNA-1
chr2_1 exon 47111335 47111468 47111335 ID=Msa0209370-mRNA-1:exon:13374;Parent=Msa0209370-mRNA-1
chr2_1 exon 47111706 47111774 47111706 ID=Msa0209370-mRNA-1:exon:13375;Parent=Msa0209370-mRNA-1
chr2_1 exon 47111885 47111956 47111885 ID=Msa0209370-mRNA-1:exon:13376;Parent=Msa0209370-mRNA-1
chr2_1 exon 47112273 47112355 47112273 ID=Msa0209370-mRNA-1:exon:13377;Parent=Msa0209370-mRNA-1
chr2_1 exon 47112450 47112581 47112450 ID=Msa0209370-mRNA-1:exon:13378;Parent=Msa0209370-mRNA-1
chr2_1 exon 47112870 47113083 47112870 ID=Msa0209370-mRNA-1:exon:13379;Parent=Msa0209370-mRNA-1
chr2_1 exon 47114209 47114632 47114209 ID=Msa0209370-mRNA-1:exon:13380;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47110061 47110222 47110061 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47110232 47110385 47110232 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47111335 47111468 47111335 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47111706 47111774 47111706 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47111885 47111956 47111885 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47112273 47112355 47112273 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47112450 47112581 47112450 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47112870 47113083 47112870 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 CDS 47114209 47114253 47114209 ID=Msa0209370-mRNA-1:cds;Parent=Msa0209370-mRNA-1
chr2_1 three_prime_UTR 47114254 47114632 47114254 ID=Msa0209370-mRNA-1:three_prime_utr;Parent=Msa0209370-mRNA-1
Gene Sequence

>Msa0209370

ATGGCCACTTCCATTCTCTCCCACCCATTTCCTACAACTTGCACCACTTTCCGGCGACCAACCTCCGCCTTCAACATCCACAACTACCCTCCACTTCTTCTCCAGCCACCACGGAGACACCGTAAAAAAAATCACATTAAATGGGCCATTAATCTGAGCTTAAGTACACAAAAATCGAGTTTTGATTTGCAGCAACTTGTTGCGTTTCTTTACGACGATCTTCCTCACCTCTTTGATGATAAGGGTATTGATAAAAATGCTTATGATGAACGTGTCTTCTTTCGTGACCCAATTACTAAGCATGATGATTTGAGTGGACCTTATGAAATAACTACAAGATGGACCATGGTTATGAAATTCATGCTGCTTCCATGGAAACCAGAATTGGTCTTTACAGGAACATCTGTTATGGGTGTTAACCCAGAAAATGGCAAGTTTTGTAGCCATGTGGACTTTTGGGATTCACTAAAGAAAAATGACTATTTTTCATTTGAAGGTTTATTGGAAGTATTCAAACAGTTGAGGATTTACAAGACACCAGATTTGGAATCACCCAAATATCAAATATTAAAACGGACAGCAAATTATGAGGTTAGACAGTATGATCCATTCGTAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGAATACCGGCTTTAATGATGTTGCTGGGTATATATTTGGAAAGAATTCCACAGCAGAGAAGATACCGATGACTACTCCTGTATTCACTCAAGCCATCGATATTGACTTGTCCAAAGTCTCAATCCAAATAGTTCTTCCATCAGACAAAGAAACAAAGAGTTTACCAAATCCTAATCAAGAAACAGTTAGCTTGAGAAAGGTAGAAGGAGGCATTGCTGCAGTAATAAAGTTTAGTGGAAAACCCATGGAGGATATTGTTCGCGAAAAGGAGAAAATTTTACGCTCCAATATCATTAAAGATGGTCTGAAACCTCAGCCTGGTTGTTTGCTTGCCCGTTACAATGATCCAGGTCGAACATGGTCCTTCATAATGAGGAATGAAGTGCTCATTTGGCTAGATGACTTCTCATTGGATTAG

Protein sequence

>Msa0209370

MATSILSHPFPTTCTTFRRPTSAFNIHNYPPLLLQPPRRHRKKNHIKWAINLSLSTQKSSFDLQQLVAFLYDDLPHLFDDKGIDKNAYDERVFFRDPITKHDDLSGPYEITTRWTMVMKFMLLPWKPELVFTGTSVMGVNPENGKFCSHVDFWDSLKKNDYFSFEGLLEVFKQLRIYKTPDLESPKYQILKRTANYEVRQYDPFVVVETNGDKLSGNTGFNDVAGYIFGKNSTAEKIPMTTPVFTQAIDIDLSKVSIQIVLPSDKETKSLPNPNQETVSLRKVEGGIAAVIKFSGKPMEDIVREKEKILRSNIIKDGLKPQPGCLLARYNDPGRTWSFIMRNEVLIWLDDFSLD*