AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1209990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209990 MtrunA17_Chr4g0059171 97.333 300 8 0 1 300 1 300 0.0 608
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209990 AT5G62840.1 70.260 269 74 2 32 300 35 297 2.12e-138 393
Msa1209990 AT5G62840.2 76.339 224 53 0 77 300 9 232 2.06e-130 370

Find 109 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACCCTCTCTTATTAAT+TGG 0.167996 8_1:-68681214 Msa1209990:three_prime_UTR
TTTGAGCTACATTGTGTAAA+TGG 0.201252 8_1:+68681238 None:intergenic
TTAAACTGACTGAAGATAAT+TGG 0.208203 8_1:-68681679 Msa1209990:three_prime_UTR
AGAATCAGAGTTTGAGAGTA+TGG 0.209979 8_1:-68683231 Msa1209990:CDS
ACCTTATTATACCAGATAAA+TGG 0.215021 8_1:-68681793 Msa1209990:three_prime_UTR
TTTCTTGATGCCCGGGGATT+AGG 0.240707 8_1:-68682892 Msa1209990:CDS
GGAAGACATGGTGGTTGTTC+TGG 0.260928 8_1:+68683443 None:intergenic
GAGGAGGTTGTTGAGTTGTT+TGG 0.273887 8_1:+68683418 None:intergenic
TAAAAGAGCTAATTACAATT+TGG 0.279975 8_1:+68681824 None:intergenic
AGGAGGTTGTTGAGTTGTTT+GGG 0.284336 8_1:+68683419 None:intergenic
GCTATACATGTCCATTTATC+TGG 0.284457 8_1:+68681782 None:intergenic
TCCATTTATCTGGTATAATA+AGG 0.292604 8_1:+68681792 None:intergenic
TTAATTGTAACAATGTCTTT+TGG 0.304219 8_1:-68681264 Msa1209990:three_prime_UTR
GTGATAATAATTGTTGGATT+TGG 0.325911 8_1:-68683097 Msa1209990:CDS
TGATTTCAGTTATATTGTTC+CGG 0.332744 8_1:-68682923 Msa1209990:intron
CGTACTTTGCTTATTTGCTT+TGG 0.336461 8_1:+68681417 None:intergenic
GATAATGGTTTATCTGATAG+AGG 0.351718 8_1:-68683170 Msa1209990:CDS
GTCAATCCTTCAGGCTGGTT+TGG 0.352871 8_1:-68682103 Msa1209990:CDS
CTAATTACAATTTGGTAGCT+TGG 0.355446 8_1:+68681832 None:intergenic
AGTCCACTGGCAATGGCTAC+TGG 0.359432 8_1:+68683308 None:intergenic
CTGTTAATTCTATTACTAGA+AGG 0.363981 8_1:-68683028 Msa1209990:intron
AGGGTTTGACACGTGTTATT+TGG 0.364172 8_1:+68683479 None:intergenic
ACATCTGCAACACTCTCATT+TGG 0.372094 8_1:+68682216 None:intergenic
GGATAACTTGTCAATCCTTC+AGG 0.382464 8_1:-68682112 Msa1209990:CDS
TGAAGTGAGGTTGAAGTTGA+AGG 0.399429 8_1:+68683355 None:intergenic
CGTTATAGTCTCGCCAGATT+CGG 0.401884 8_1:-68682133 Msa1209990:CDS
AATGGCTACTGGGTCTGAAA+TGG 0.406139 8_1:+68683319 None:intergenic
AGATTACTTGTCTTTCAGTT+TGG 0.412826 8_1:-68681367 Msa1209990:three_prime_UTR
CACCAGCGTATTGAGTTTCA+AGG 0.416878 8_1:+68682163 None:intergenic
CAGTACTATCTTGTGAGGTC+TGG 0.429270 8_1:-68683254 Msa1209990:CDS
ATTTGGAGTTCCGTCATCAA+TGG 0.433255 8_1:+68682233 None:intergenic
GAATCAGAGTTTGAGAGTAT+GGG 0.435737 8_1:-68683230 Msa1209990:CDS
ATTCATCGTTGCTTATGATA+AGG 0.437214 8_1:-68683564 Msa1209990:five_prime_UTR
TTCAAGGATTGACATGAGTT+GGG 0.442821 8_1:+68682179 None:intergenic
GCATCAAGAAAGCTGTATTC+CGG 0.443393 8_1:+68682904 None:intergenic
ATTGACAAGTTATCCGAATC+TGG 0.446235 8_1:+68682120 None:intergenic
TTTCAAGGATTGACATGAGT+TGG 0.449172 8_1:+68682178 None:intergenic
CATGAAAATGCATGGAATAG+AGG 0.461728 8_1:-68681598 Msa1209990:three_prime_UTR
TGAGAAGGTGGCGACGGTGG+AGG 0.463378 8_1:+68683399 None:intergenic
TTGATGACCAGAAGCGTTGT+GGG 0.464558 8_1:-68681392 Msa1209990:three_prime_UTR
GCGAAAACCTCTGTGGATAA+TGG 0.469059 8_1:-68683185 Msa1209990:CDS
TAGTGGTAGTCCATCGGTAA+TGG 0.469091 8_1:-68681334 Msa1209990:three_prime_UTR
AATACAGCTTTCTTGATGCC+CGG 0.469191 8_1:-68682900 Msa1209990:CDS
TGCACCTGGTGAAGTTCGCC+AGG 0.480792 8_1:-68681912 Msa1209990:CDS
TTTGGAGTTCCGTCATCAAT+GGG 0.482434 8_1:+68682234 None:intergenic
GGAGAAACAAATATAGTAGC+AGG 0.485495 8_1:-68681557 Msa1209990:three_prime_UTR
CTTCATAAGCACCTAATCCC+CGG 0.488075 8_1:+68682881 None:intergenic
GTGCTTGTGATAATAATTGT+TGG 0.488939 8_1:-68683103 Msa1209990:CDS
ATGGCTACTGGGTCTGAAAT+GGG 0.492102 8_1:+68683320 None:intergenic
ATACAGCTTTCTTGATGCCC+GGG 0.493819 8_1:-68682899 Msa1209990:CDS
GGAGATGGTGAATGCGGTTG+TGG 0.499094 8_1:+68683376 None:intergenic
CTTGTAAGTAGGAATGTCAT+TGG 0.501498 8_1:+68681883 None:intergenic
AGTGGTAGTCCATCGGTAAT+GGG 0.504086 8_1:-68681333 Msa1209990:three_prime_UTR
ATCCTTCAGGCTGGTTTGGT+AGG 0.505388 8_1:-68682099 Msa1209990:CDS
ATCAAGATATATGCTATAGC+AGG 0.510113 8_1:-68681526 Msa1209990:three_prime_UTR
GTCCACTGGCAATGGCTACT+GGG 0.514678 8_1:+68683309 None:intergenic
GAGCATTTATATACAGCAGA+TGG 0.517333 8_1:+68681854 None:intergenic
AACTTGTCAATCCTTCAGGC+TGG 0.518288 8_1:-68682108 Msa1209990:CDS
TTAGTTACCTTCGCAAGTCT+AGG 0.522431 8_1:+68682076 None:intergenic
ATTAAATTCATGAAAATGCA+TGG 0.524111 8_1:-68681606 Msa1209990:three_prime_UTR
GAAGGTGGCGACGGTGGAGG+AGG 0.525530 8_1:+68683402 None:intergenic
ATCGTTGCTTATGATAAGGC+AGG 0.535089 8_1:-68683560 Msa1209990:five_prime_UTR
TGGTGAGAAGGTGGCGACGG+TGG 0.535642 8_1:+68683396 None:intergenic
AGTTGTTTGGGAGGAAGACA+TGG 0.536257 8_1:+68683431 None:intergenic
TTCTGGCTGAGAAAATGAAA+GGG 0.541301 8_1:+68683460 None:intergenic
GATGAAGAGTCCACTGGCAA+TGG 0.543180 8_1:+68683301 None:intergenic
CAGACCTCACAAGATAGTAC+TGG 0.547671 8_1:+68683255 None:intergenic
TTCATAAGCACCTAATCCCC+GGG 0.556032 8_1:+68682882 None:intergenic
TCAACCTGGCGAACTTCACC+AGG 0.560030 8_1:+68681908 None:intergenic
TTTGATGACCAGAAGCGTTG+TGG 0.560922 8_1:-68681393 Msa1209990:three_prime_UTR
GATGGAGGCATCTTGTAAGT+AGG 0.561832 8_1:+68681872 None:intergenic
TTTCTCCAATTAATAAGAGA+GGG 0.564698 8_1:+68681209 None:intergenic
GTTCTGGCTGAGAAAATGAA+AGG 0.568548 8_1:+68683459 None:intergenic
AGGTGACGGAAATGATATTG+AGG 0.568857 8_1:-68681578 Msa1209990:three_prime_UTR
GTTTCTCCAATTAATAAGAG+AGG 0.570676 8_1:+68681208 None:intergenic
CGGGGATTAGGTGCTTATGA+AGG 0.572396 8_1:-68682880 Msa1209990:CDS
TAAGCTCTCTGAGTAATAGC+AGG 0.573762 8_1:+68683074 None:intergenic
GTTCCGTCATCAATGGGAGG+AGG 0.579788 8_1:+68682240 None:intergenic
TTGTGGTGAGAAGGTGGCGA+CGG 0.590124 8_1:+68683393 None:intergenic
GGCCTACCAAACCAGCCTGA+AGG 0.599102 8_1:+68682097 None:intergenic
AGGTTGTTGAGTTGTTTGGG+AGG 0.599491 8_1:+68683422 None:intergenic
GACCCAGTAGCCATTGCCAG+TGG 0.599668 8_1:-68683311 Msa1209990:CDS
TGGTAGGCCTAGACTTGCGA+AGG 0.604829 8_1:-68682083 Msa1209990:intron
TGAATGCGGTTGTGGTGAGA+AGG 0.616152 8_1:+68683384 None:intergenic
ATAATGGTTTATCTGATAGA+GGG 0.616419 8_1:-68683169 Msa1209990:CDS
AATGCATGGAATAGAGGTGA+CGG 0.617806 8_1:-68681592 Msa1209990:three_prime_UTR
TATCTGGTATAATAAGGTGA+AGG 0.618225 8_1:+68681798 None:intergenic
GTGCAGATATATGCATCAGA+TGG 0.620930 8_1:-68682282 Msa1209990:intron
ATCCTTGAAACTCAATACGC+TGG 0.621540 8_1:-68682165 Msa1209990:CDS
TGATGACCAGAAGCGTTGTG+GGG 0.624923 8_1:-68681391 Msa1209990:three_prime_UTR
TGGGTCTGAAATGGGAAGTG+TGG 0.624924 8_1:+68683328 None:intergenic
GATGACCAGAAGCGTTGTGG+GGG 0.625819 8_1:-68681390 Msa1209990:three_prime_UTR
TGTTTGGGAGGAAGACATGG+TGG 0.625868 8_1:+68683434 None:intergenic
GAGGTTGAAGTTGAAGGAGA+TGG 0.626119 8_1:+68683361 None:intergenic
AAACCTCCTCCCATTGATGA+CGG 0.626640 8_1:-68682243 Msa1209990:CDS
TACAGCTTTCTTGATGCCCG+GGG 0.627678 8_1:-68682898 Msa1209990:CDS
AGGCATGATGAAGAGTCCAC+TGG 0.631288 8_1:+68683295 None:intergenic
CCCTGTGGCGAAAACCTCTG+TGG 0.637394 8_1:-68683192 Msa1209990:CDS
GAATGTCATTGGTATCAACC+TGG 0.639678 8_1:+68681894 None:intergenic
GAAACAAATATAGTAGCAGG+AGG 0.641743 8_1:-68681554 Msa1209990:three_prime_UTR
TGTCTCAAATTTCAGGCACA+GGG 0.642949 8_1:-68681945 Msa1209990:intron
CATTTATATACAGCAGATGG+AGG 0.643462 8_1:+68681857 None:intergenic
GGAGTTCCGTCATCAATGGG+AGG 0.650140 8_1:+68682237 None:intergenic
ATGCGGTTGTGGTGAGAAGG+TGG 0.658744 8_1:+68683387 None:intergenic
GTTGAAGGAGATGGTGAATG+CGG 0.660211 8_1:+68683370 None:intergenic
AAAACCAGTACTATCTTGTG+AGG 0.679514 8_1:-68683259 Msa1209990:CDS
TGTGTGTAGTGGTAGTCCAT+CGG 0.682985 8_1:-68681340 Msa1209990:three_prime_UTR
AGATAAACCATTATCCACAG+AGG 0.721820 8_1:+68683178 None:intergenic
AGTGATAAACACCAACCCTG+TGG 0.739470 8_1:-68683207 Msa1209990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTATTATTAGAGTTT+CGG + chr8_1:68682046-68682065 None:intergenic 15.0%
!! AACAATTATTATTAGAGTTT+CGG + chr8_1:68682046-68682065 None:intergenic 15.0%
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr8_1:68681803-68681822 Msa1209990:three_prime_UTR 20.0%
!! AAAGTAAATAAAACAGTACA+TGG + chr8_1:68681948-68681967 None:intergenic 20.0%
!! ACTCTAATAATAATTGTTGT+CGG - chr8_1:68682048-68682067 Msa1209990:intron 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr8_1:68682236-68682255 Msa1209990:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr8_1:68682270-68682289 Msa1209990:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr8_1:68682942-68682961 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr8_1:68683054-68683073 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr8_1:68683157-68683176 Msa1209990:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr8_1:68683499-68683518 Msa1209990:exon 20.0%
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr8_1:68681803-68681822 Msa1209990:three_prime_UTR 20.0%
!! AAAGTAAATAAAACAGTACA+TGG + chr8_1:68681948-68681967 None:intergenic 20.0%
!! ACTCTAATAATAATTGTTGT+CGG - chr8_1:68682048-68682067 Msa1209990:intron 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr8_1:68682236-68682255 Msa1209990:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr8_1:68682270-68682289 Msa1209990:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr8_1:68682942-68682961 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr8_1:68683054-68683073 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr8_1:68683157-68683176 Msa1209990:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr8_1:68683499-68683518 Msa1209990:exon 20.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr8_1:68681248-68681267 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr8_1:68681594-68681613 Msa1209990:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr8_1:68681637-68681656 Msa1209990:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr8_1:68681638-68681657 Msa1209990:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr8_1:68681666-68681685 Msa1209990:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr8_1:68681735-68681754 Msa1209990:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr8_1:68681802-68681821 Msa1209990:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr8_1:68681840-68681859 Msa1209990:CDS 25.0%
! TAATACATGAGATTCTTGTT+AGG + chr8_1:68682078-68682097 None:intergenic 25.0%
! TACTAAGAAGGTGATTTAAT+TGG - chr8_1:68682109-68682128 Msa1209990:CDS 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr8_1:68682237-68682256 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr8_1:68682271-68682290 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr8_1:68682269-68682288 Msa1209990:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr8_1:68682411-68682430 Msa1209990:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr8_1:68682456-68682475 Msa1209990:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr8_1:68682459-68682478 Msa1209990:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr8_1:68682750-68682769 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr8_1:68682970-68682989 Msa1209990:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr8_1:68682974-68682993 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr8_1:68683084-68683103 Msa1209990:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr8_1:68683468-68683487 Msa1209990:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr8_1:68683557-68683576 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr8_1:68683580-68683599 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr8_1:68683581-68683600 Msa1209990:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr8_1:68683589-68683608 Msa1209990:five_prime_UTR 25.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr8_1:68681248-68681267 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr8_1:68681594-68681613 Msa1209990:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr8_1:68681637-68681656 Msa1209990:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr8_1:68681638-68681657 Msa1209990:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr8_1:68681666-68681685 Msa1209990:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr8_1:68681735-68681754 Msa1209990:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr8_1:68681802-68681821 Msa1209990:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr8_1:68681840-68681859 Msa1209990:CDS 25.0%
! TAATACATGAGATTCTTGTT+AGG + chr8_1:68682078-68682097 None:intergenic 25.0%
! TACTAAGAAGGTGATTTAAT+TGG - chr8_1:68682109-68682128 Msa1209990:CDS 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr8_1:68682237-68682256 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr8_1:68682271-68682290 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr8_1:68682269-68682288 Msa1209990:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr8_1:68682411-68682430 Msa1209990:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr8_1:68682456-68682475 Msa1209990:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr8_1:68682459-68682478 Msa1209990:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr8_1:68682750-68682769 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr8_1:68682970-68682989 Msa1209990:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr8_1:68682974-68682993 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr8_1:68683084-68683103 Msa1209990:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr8_1:68683468-68683487 Msa1209990:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr8_1:68683557-68683576 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr8_1:68683580-68683599 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr8_1:68683581-68683600 Msa1209990:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr8_1:68683589-68683608 Msa1209990:five_prime_UTR 25.0%
ATTCATCGTTGCTTATGATA+AGG - chr8_1:68681199-68681218 Msa1209990:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr8_1:68681502-68681521 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr8_1:68681593-68681612 Msa1209990:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr8_1:68681660-68681679 Msa1209990:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr8_1:68681747-68681766 Msa1209990:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr8_1:68681790-68681809 Msa1209990:three_prime_UTR 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr8_1:68682744-68682763 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr8_1:68682811-68682830 Msa1209990:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr8_1:68682934-68682953 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr8_1:68682968-68682987 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr8_1:68683237-68683256 Msa1209990:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr8_1:68683396-68683415 Msa1209990:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr8_1:68683528-68683547 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr8_1:68683549-68683568 Msa1209990:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr8_1:68683558-68683577 None:intergenic 30.0%
ATTCATCGTTGCTTATGATA+AGG - chr8_1:68681199-68681218 Msa1209990:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr8_1:68681502-68681521 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr8_1:68681593-68681612 Msa1209990:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr8_1:68681660-68681679 Msa1209990:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr8_1:68681747-68681766 Msa1209990:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr8_1:68681790-68681809 Msa1209990:three_prime_UTR 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr8_1:68682744-68682763 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr8_1:68682811-68682830 Msa1209990:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr8_1:68682934-68682953 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr8_1:68682968-68682987 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr8_1:68683237-68683256 Msa1209990:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr8_1:68683396-68683415 Msa1209990:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr8_1:68683528-68683547 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr8_1:68683549-68683568 Msa1209990:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr8_1:68683558-68683577 None:intergenic 30.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr8_1:68681245-68681264 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr8_1:68681306-68681325 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr8_1:68681504-68681523 Msa1209990:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr8_1:68681532-68681551 Msa1209990:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr8_1:68681533-68681552 Msa1209990:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr8_1:68681588-68681607 None:intergenic 35.0%
TACATGAGATTCTTGTTAGG+AGG + chr8_1:68682075-68682094 None:intergenic 35.0%
AAATCACCTTCTTAGTAACC+AGG + chr8_1:68682106-68682125 None:intergenic 35.0%
GAAGGTGATTTAATTGGTGT+TGG - chr8_1:68682115-68682134 Msa1209990:CDS 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr8_1:68682587-68682606 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr8_1:68682588-68682607 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr8_1:68682646-68682665 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr8_1:68682883-68682902 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr8_1:68682909-68682928 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr8_1:68682912-68682931 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr8_1:68682984-68683003 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr8_1:68683165-68683184 Msa1209990:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr8_1:68683206-68683225 Msa1209990:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr8_1:68683209-68683228 Msa1209990:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr8_1:68683313-68683332 Msa1209990:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr8_1:68683314-68683333 Msa1209990:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr8_1:68683349-68683368 None:intergenic 35.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr8_1:68681245-68681264 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr8_1:68681306-68681325 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr8_1:68681504-68681523 Msa1209990:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr8_1:68681532-68681551 Msa1209990:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr8_1:68681533-68681552 Msa1209990:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr8_1:68681588-68681607 None:intergenic 35.0%
TACATGAGATTCTTGTTAGG+AGG + chr8_1:68682075-68682094 None:intergenic 35.0%
AAATCACCTTCTTAGTAACC+AGG + chr8_1:68682106-68682125 None:intergenic 35.0%
GAAGGTGATTTAATTGGTGT+TGG - chr8_1:68682115-68682134 Msa1209990:CDS 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr8_1:68682587-68682606 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr8_1:68682588-68682607 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr8_1:68682646-68682665 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr8_1:68682883-68682902 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr8_1:68682909-68682928 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr8_1:68682912-68682931 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr8_1:68682984-68683003 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr8_1:68683165-68683184 Msa1209990:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr8_1:68683206-68683225 Msa1209990:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr8_1:68683209-68683228 Msa1209990:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr8_1:68683313-68683332 Msa1209990:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr8_1:68683314-68683333 Msa1209990:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr8_1:68683349-68683368 None:intergenic 35.0%
ATCGTTGCTTATGATAAGGC+AGG - chr8_1:68681203-68681222 Msa1209990:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr8_1:68681241-68681260 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr8_1:68681287-68681306 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr8_1:68681307-68681326 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr8_1:68681347-68681366 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr8_1:68681411-68681430 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr8_1:68681424-68681443 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr8_1:68681497-68681516 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr8_1:68681692-68681711 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr8_1:68681862-68681881 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr8_1:68681863-68681882 Msa1209990:CDS 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr8_1:68682085-68682104 Msa1209990:CDS 40.0%
GTGCAGATATATGCATCAGA+TGG - chr8_1:68682481-68682500 Msa1209990:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr8_1:68682532-68682551 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr8_1:68682533-68682552 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr8_1:68682550-68682569 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr8_1:68682598-68682617 Msa1209990:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr8_1:68682651-68682670 Msa1209990:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr8_1:68682690-68682709 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr8_1:68682713-68682732 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr8_1:68682740-68682759 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr8_1:68682818-68682837 Msa1209990:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr8_1:68682872-68682891 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr8_1:68683171-68683190 Msa1209990:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr8_1:68683185-68683204 Msa1209990:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr8_1:68683277-68683296 Msa1209990:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr8_1:68683442-68683461 None:intergenic 40.0%
ATCGTTGCTTATGATAAGGC+AGG - chr8_1:68681203-68681222 Msa1209990:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr8_1:68681241-68681260 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr8_1:68681287-68681306 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr8_1:68681307-68681326 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr8_1:68681347-68681366 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr8_1:68681411-68681430 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr8_1:68681424-68681443 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr8_1:68681497-68681516 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr8_1:68681692-68681711 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr8_1:68681862-68681881 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr8_1:68681863-68681882 Msa1209990:CDS 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr8_1:68682085-68682104 Msa1209990:CDS 40.0%
GTGCAGATATATGCATCAGA+TGG - chr8_1:68682481-68682500 Msa1209990:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr8_1:68682532-68682551 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr8_1:68682533-68682552 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr8_1:68682550-68682569 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr8_1:68682598-68682617 Msa1209990:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr8_1:68682651-68682670 Msa1209990:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr8_1:68682690-68682709 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr8_1:68682713-68682732 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr8_1:68682740-68682759 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr8_1:68682818-68682837 Msa1209990:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr8_1:68682872-68682891 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr8_1:68683171-68683190 Msa1209990:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr8_1:68683185-68683204 Msa1209990:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr8_1:68683277-68683296 Msa1209990:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr8_1:68683442-68683461 None:intergenic 40.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr8_1:68681242-68681261 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr8_1:68681335-68681354 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr8_1:68681344-68681363 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr8_1:68681348-68681367 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr8_1:68681396-68681415 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr8_1:68681405-68681424 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr8_1:68681446-68681465 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr8_1:68681447-68681466 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr8_1:68681494-68681513 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr8_1:68681511-68681530 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr8_1:68681509-68681528 Msa1209990:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr8_1:68681556-68681575 Msa1209990:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr8_1:68681578-68681597 Msa1209990:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr8_1:68681864-68681883 Msa1209990:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr8_1:68681884-68681903 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr8_1:68681885-68681904 None:intergenic 45.0%
TGTCTCATGCAGACTGTAGT+AGG - chr8_1:68682002-68682021 Msa1209990:intron 45.0%
ACTCGTCCTGGTTACTAAGA+AGG - chr8_1:68682097-68682116 Msa1209990:CDS 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr8_1:68682520-68682539 Msa1209990:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr8_1:68682603-68682622 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr8_1:68682630-68682649 Msa1209990:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr8_1:68682655-68682674 Msa1209990:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr8_1:68682817-68682836 Msa1209990:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr8_1:68682894-68682913 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr8_1:68683370-68683389 Msa1209990:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr8_1:68683371-68683390 Msa1209990:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr8_1:68683412-68683431 Msa1209990:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr8_1:68683423-68683442 Msa1209990:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr8_1:68683429-68683448 Msa1209990:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr8_1:68683430-68683449 Msa1209990:CDS 45.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr8_1:68681242-68681261 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr8_1:68681335-68681354 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr8_1:68681344-68681363 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr8_1:68681348-68681367 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr8_1:68681396-68681415 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr8_1:68681405-68681424 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr8_1:68681446-68681465 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr8_1:68681447-68681466 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr8_1:68681494-68681513 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr8_1:68681511-68681530 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr8_1:68681509-68681528 Msa1209990:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr8_1:68681556-68681575 Msa1209990:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr8_1:68681578-68681597 Msa1209990:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr8_1:68681864-68681883 Msa1209990:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr8_1:68681884-68681903 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr8_1:68681885-68681904 None:intergenic 45.0%
TGTCTCATGCAGACTGTAGT+AGG - chr8_1:68682002-68682021 Msa1209990:intron 45.0%
ACTCGTCCTGGTTACTAAGA+AGG - chr8_1:68682097-68682116 Msa1209990:CDS 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr8_1:68682520-68682539 Msa1209990:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr8_1:68682603-68682622 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr8_1:68682630-68682649 Msa1209990:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr8_1:68682655-68682674 Msa1209990:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr8_1:68682817-68682836 Msa1209990:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr8_1:68682894-68682913 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr8_1:68683370-68683389 Msa1209990:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr8_1:68683371-68683390 Msa1209990:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr8_1:68683412-68683431 Msa1209990:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr8_1:68683423-68683442 Msa1209990:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr8_1:68683429-68683448 Msa1209990:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr8_1:68683430-68683449 Msa1209990:CDS 45.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr8_1:68681174-68681193 Msa1209990:three_prime_UTR 5.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr8_1:68681174-68681193 Msa1209990:three_prime_UTR 5.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr8_1:68681236-68681255 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr8_1:68681323-68681342 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr8_1:68681332-68681351 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr8_1:68681382-68681401 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr8_1:68681438-68681457 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr8_1:68681465-68681484 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr8_1:68681471-68681490 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr8_1:68681491-68681510 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr8_1:68681865-68681884 Msa1209990:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr8_1:68681871-68681890 Msa1209990:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr8_1:68681883-68681902 Msa1209990:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr8_1:68682660-68682679 Msa1209990:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr8_1:68682664-68682683 Msa1209990:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr8_1:68682730-68682749 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr8_1:68682837-68682856 Msa1209990:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr8_1:68683372-68683391 Msa1209990:CDS 50.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr8_1:68681236-68681255 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr8_1:68681323-68681342 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr8_1:68681332-68681351 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr8_1:68681382-68681401 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr8_1:68681438-68681457 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr8_1:68681465-68681484 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr8_1:68681471-68681490 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr8_1:68681491-68681510 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr8_1:68681865-68681884 Msa1209990:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr8_1:68681871-68681890 Msa1209990:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr8_1:68681883-68681902 Msa1209990:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr8_1:68682660-68682679 Msa1209990:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr8_1:68682664-68682683 Msa1209990:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr8_1:68682730-68682749 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr8_1:68682837-68682856 Msa1209990:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr8_1:68683372-68683391 Msa1209990:CDS 50.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr8_1:68681373-68681392 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr8_1:68681379-68681398 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr8_1:68681390-68681409 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr8_1:68681457-68681476 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr8_1:68681458-68681477 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr8_1:68681570-68681589 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr8_1:68681574-68681593 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr8_1:68681575-68681594 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr8_1:68682526-68682545 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr8_1:68682529-68682548 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr8_1:68682680-68682699 Msa1209990:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr8_1:68682734-68682753 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr8_1:68682858-68682877 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr8_1:68683373-68683392 Msa1209990:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr8_1:68683381-68683400 None:intergenic 55.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr8_1:68681373-68681392 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr8_1:68681379-68681398 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr8_1:68681390-68681409 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr8_1:68681457-68681476 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr8_1:68681458-68681477 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr8_1:68681570-68681589 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr8_1:68681574-68681593 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr8_1:68681575-68681594 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr8_1:68682526-68682545 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr8_1:68682529-68682548 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr8_1:68682680-68682699 Msa1209990:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr8_1:68682734-68682753 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr8_1:68682858-68682877 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr8_1:68683373-68683392 Msa1209990:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr8_1:68683381-68683400 None:intergenic 55.0%
GACCCAGTAGCCATTGCCAG+TGG - chr8_1:68681452-68681471 Msa1209990:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr8_1:68681571-68681590 Msa1209990:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr8_1:68682669-68682688 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr8_1:68682851-68682870 Msa1209990:intron 60.0%
GACCCAGTAGCCATTGCCAG+TGG - chr8_1:68681452-68681471 Msa1209990:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr8_1:68681571-68681590 Msa1209990:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr8_1:68682669-68682688 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr8_1:68682851-68682870 Msa1209990:intron 60.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr8_1:68681367-68681386 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr8_1:68681370-68681389 None:intergenic 65.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr8_1:68681367-68681386 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr8_1:68681370-68681389 None:intergenic 65.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr8_1:68681364-68681383 None:intergenic 70.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr8_1:68681364-68681383 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 68681173 68683612 68681173 ID=Msa1209990;Name=Msa1209990
chr8_1 mRNA 68681173 68683612 68681173 ID=Msa1209990-mRNA-1;Parent=Msa1209990;Name=Msa1209990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|1|1|4|659|300
chr8_1 exon 68681173 68681952 68681173 ID=Msa1209990-mRNA-1:exon:22870;Parent=Msa1209990-mRNA-1
chr8_1 exon 68682084 68682298 68682084 ID=Msa1209990-mRNA-1:exon:22869;Parent=Msa1209990-mRNA-1
chr8_1 exon 68682855 68682936 68682855 ID=Msa1209990-mRNA-1:exon:22868;Parent=Msa1209990-mRNA-1
chr8_1 exon 68683029 68683612 68683029 ID=Msa1209990-mRNA-1:exon:22867;Parent=Msa1209990-mRNA-1
chr8_1 five_prime_UTR 68683514 68683612 68683514 ID=Msa1209990-mRNA-1:five_prime_utr;Parent=Msa1209990-mRNA-1
chr8_1 CDS 68683029 68683513 68683029 ID=Msa1209990-mRNA-1:cds;Parent=Msa1209990-mRNA-1
chr8_1 CDS 68682855 68682936 68682855 ID=Msa1209990-mRNA-1:cds;Parent=Msa1209990-mRNA-1
chr8_1 CDS 68682084 68682298 68682084 ID=Msa1209990-mRNA-1:cds;Parent=Msa1209990-mRNA-1
chr8_1 CDS 68681832 68681952 68681832 ID=Msa1209990-mRNA-1:cds;Parent=Msa1209990-mRNA-1
chr8_1 three_prime_UTR 68681173 68681831 68681173 ID=Msa1209990-mRNA-1:three_prime_utr;Parent=Msa1209990-mRNA-1
Gene Sequence

>Msa1209990

ATGCTATTAGCACCAAATAACACGTGTCAAACCCTTTCATTTTCTCAGCCAGAACAACCACCATGTCTTCCTCCCAAACAACTCAACAACCTCCTCCACCGTCGCCACCTTCTCACCACAACCGCATTCACCATCTCCTTCAACTTCAACCTCACTTCAAAAACCACACTTCCCATTTCAGACCCAGTAGCCATTGCCAGTGGACTCTTCATCATGCCTCCACCACGCCTTAAAAACCAGTACTATCTTGTGAGGTCTGGAGAATCAGAGTTTGAGAGTATGGGAGTGATAAACACCAACCCTGTGGCGAAAACCTCTGTGGATAATGGTTTATCTGATAGAGGGAAGAAACAGAGTATCAGAGCTGCTTTTGATTTGAAAGAAATGGGTGCTTGTGATAATAATTGTTGGATTTGGCCTGCTATTACTCAGAGAGCTTATCAAACTGCTGAGATTATTGCTTCTGTTAATTCTATTACTAGAAGTTATATTGTTCCGGAATACAGCTTTCTTGATGCCCGGGGATTAGGTGCTTATGAAGGAAAAACTTTAGAATATGTTTCAGAAATATATGCATCAGATGGTATATCTACAAAAATAAAACCTCCTCCCATTGATGACGGAACTCCAAATGAGAGTGTTGCAGATGTTTTTGTTCGTGTGACCCAACTCATGTCAATCCTTGAAACTCAATACGCTGGTGACACAGTCGTTATAGTCTCGCCAGATTCGGATAACTTGTCAATCCTTCAGGCTGGTTTGGTAGGCCTAGACTTGCGAAGGCACAGGGAGTTGTCTTTTGCACCTGGTGAAGTTCGCCAGGTTGATACCAATGACATTCCTACTTACAAGATGCCTCCATCTGCTGTATATAAATGCTCCAAGCTACCAAATTGTAATTAG

Protein sequence

>Msa1209990

MLLAPNNTCQTLSFSQPEQPPCLPPKQLNNLLHRRHLLTTTAFTISFNFNLTSKTTLPISDPVAIASGLFIMPPPRLKNQYYLVRSGESEFESMGVINTNPVAKTSVDNGLSDRGKKQSIRAAFDLKEMGACDNNCWIWPAITQRAYQTAEIIASVNSITRSYIVPEYSFLDARGLGAYEGKTLEYVSEIYASDGISTKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYAGDTVVIVSPDSDNLSILQAGLVGLDLRRHRELSFAPGEVRQVDTNDIPTYKMPPSAVYKCSKLPNCN*