AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392030 MtrunA17_Chr3g0077151 95.876 97 4 0 15 111 278 374 8.32e-57 187
Msa0392030 MtrunA17_Chr3g0077151 86.667 90 10 1 105 194 460 547 2.81e-44 154
Msa0392030 MtrunA17_Chr4g0014841 55.469 128 49 4 15 137 285 409 3.12e-37 135
Msa0392030 MtrunA17_Chr4g0014841 58.621 87 34 1 105 191 466 550 6.13e-26 103
Msa0392030 MtrunA17_Chr4g0014781 52.381 126 47 2 15 128 287 411 5.95e-36 131
Msa0392030 MtrunA17_Chr4g0014781 55.172 87 37 1 105 191 468 552 6.28e-24 98.2
Msa0392030 MtrunA17_Chr4g0014791 51.587 126 45 2 15 128 288 409 1.74e-35 130
Msa0392030 MtrunA17_Chr4g0014791 58.427 89 35 1 105 193 466 552 4.48e-26 104
Msa0392030 MtrunA17_Chr4g0014871 51.969 127 55 3 15 137 289 413 2.87e-34 127
Msa0392030 MtrunA17_Chr4g0014871 56.322 87 36 1 105 191 470 554 6.18e-25 101
Msa0392030 MtrunA17_Chr4g0014801 50.394 127 57 3 15 137 287 411 4.19e-34 126
Msa0392030 MtrunA17_Chr4g0014801 54.444 90 39 1 105 194 468 555 1.78e-24 99.8
Msa0392030 MtrunA17_Chr4g0014861 49.206 126 51 2 15 128 164 288 1.00e-33 124
Msa0392030 MtrunA17_Chr4g0014861 57.471 87 35 1 105 191 345 429 1.84e-25 101
Msa0392030 MtrunA17_Chr3g0082631 37.013 154 82 4 15 158 188 336 1.68e-25 102
Msa0392030 MtrunA17_Chr3g0082631 40.909 88 47 3 105 191 377 460 7.44e-14 68.9
Msa0392030 MtrunA17_Chr7g0241741 37.255 153 77 3 16 149 294 446 1.01e-24 100
Msa0392030 MtrunA17_Chr7g0241741 40.741 81 48 0 111 191 482 562 1.22e-14 71.6
Msa0392030 MtrunA17_Chr3g0104011 38.636 132 63 3 15 128 294 425 1.18e-23 97.4
Msa0392030 MtrunA17_Chr3g0104011 37.805 82 51 0 111 192 484 565 2.21e-11 62.0
Msa0392030 MtrunA17_Chr8g0375291 37.984 129 61 3 16 126 314 441 5.54e-23 95.5
Msa0392030 MtrunA17_Chr4g0056431 38.356 146 70 4 2 128 291 435 8.29e-23 95.1
Msa0392030 MtrunA17_Chr8g0375311 35.659 129 64 3 16 126 314 441 1.04e-22 94.7
Msa0392030 MtrunA17_Chr4g0005901 37.795 127 62 2 16 125 304 430 1.26e-22 94.4
Msa0392030 MtrunA17_Chr4g0005901 37.349 83 52 0 111 193 492 574 2.25e-13 67.8
Msa0392030 MtrunA17_Chr1g0166731 45.833 96 51 1 15 110 198 292 1.39e-22 94.0
Msa0392030 MtrunA17_Chr1g0166731 36.607 112 66 3 79 190 355 461 1.24e-15 74.3
Msa0392030 MtrunA17_Chr8g0375351 36.567 134 75 3 15 139 313 445 4.49e-22 92.8
Msa0392030 MtrunA17_Chr8g0375341 34.228 149 81 4 7 139 298 445 6.74e-22 92.4
Msa0392030 MtrunA17_Chr8g0353031 32.258 155 96 3 2 147 269 423 1.12e-21 91.7
Msa0392030 MtrunA17_Chr8g0353031 35.172 145 85 6 53 191 410 551 3.46e-14 70.1
Msa0392030 MtrunA17_Chr1g0166711 43.750 96 53 1 15 110 301 395 1.63e-21 91.3
Msa0392030 MtrunA17_Chr1g0166711 34.821 112 68 3 79 190 458 564 1.73e-14 70.9
Msa0392030 MtrunA17_Chr8g0375321 35.374 147 84 4 2 139 298 442 2.49e-21 90.9
Msa0392030 MtrunA17_Chr2g0276751 36.364 132 77 4 15 139 301 432 6.76e-21 89.7
Msa0392030 MtrunA17_Chr6g0451841 36.283 113 60 1 28 128 284 396 2.11e-20 88.2
Msa0392030 MtrunA17_Chr6g0451841 39.286 84 51 0 110 193 456 539 5.24e-12 63.9
Msa0392030 MtrunA17_Chr8g0375361 34.109 129 66 3 15 125 312 439 3.11e-20 87.8
Msa0392030 MtrunA17_Chr8g0375331 35.821 134 76 3 15 139 297 429 4.17e-20 87.4
Msa0392030 MtrunA17_Chr4g0008651 35.714 112 68 2 4 111 294 405 1.57e-19 85.5
Msa0392030 MtrunA17_Chr4g0008651 41.111 90 50 2 105 194 487 573 2.78e-14 70.5
Msa0392030 MtrunA17_Chr7g0261661 30.769 156 86 3 15 156 190 337 2.92e-19 84.7
Msa0392030 MtrunA17_Chr2g0284701 29.319 191 107 5 15 189 310 488 3.08e-19 84.7
Msa0392030 MtrunA17_Chr3g0114501 41.414 99 56 1 15 111 295 393 8.71e-19 83.6
Msa0392030 MtrunA17_Chr3g0114501 42.222 90 50 1 105 194 478 565 5.69e-15 72.4
Msa0392030 MtrunA17_Chr7g0217461 40.385 104 49 2 34 125 324 426 1.58e-18 82.8
Msa0392030 MtrunA17_Chr7g0261771 33.333 144 74 3 9 131 295 437 1.73e-18 82.8
Msa0392030 MtrunA17_Chr7g0261771 37.209 86 52 1 105 190 488 571 1.17e-11 62.8
Msa0392030 MtrunA17_Chr7g0261831 37.113 97 60 1 15 111 48 143 1.87e-18 79.7
Msa0392030 MtrunA17_Chr7g0261751 33.588 131 72 2 15 131 344 473 5.15e-18 81.3
Msa0392030 MtrunA17_Chr7g0261811 35.455 110 63 2 9 111 291 399 5.16e-18 81.3
Msa0392030 MtrunA17_Chr7g0261811 37.500 104 61 2 91 194 472 571 3.87e-13 67.0
Msa0392030 MtrunA17_Chr3g0112611 36.170 141 82 4 4 137 291 430 8.47e-18 80.5
Msa0392030 MtrunA17_Chr3g0112611 37.736 106 65 1 85 190 465 569 7.60e-15 72.0
Msa0392030 MtrunA17_Chr1g0187241 35.433 127 75 4 15 137 304 427 2.06e-17 79.3
Msa0392030 MtrunA17_Chr1g0187241 35.714 112 67 3 79 190 460 566 5.13e-15 72.4
Msa0392030 MtrunA17_Chr7g0240381 38.261 115 65 3 2 111 287 400 2.79e-17 79.0
Msa0392030 MtrunA17_Chr7g0240381 42.529 87 47 2 105 191 476 559 2.33e-14 70.5
Msa0392030 MtrunA17_Chr3g0112671 35.714 112 67 2 4 111 292 402 4.20e-17 78.6
Msa0392030 MtrunA17_Chr3g0112671 43.210 81 45 1 110 190 481 560 5.25e-16 75.5
Msa0392030 MtrunA17_Chr3g0142101 28.986 138 85 2 4 128 299 436 4.91e-17 78.6
Msa0392030 MtrunA17_Chr3g0112631 32.673 101 64 1 15 111 4 104 5.31e-17 77.0
Msa0392030 MtrunA17_Chr3g0112631 44.186 86 45 2 105 190 190 272 5.64e-17 77.0
Msa0392030 MtrunA17_Chr7g0261881 28.571 133 80 2 15 133 304 435 7.31e-17 77.8
Msa0392030 MtrunA17_Chr7g0261881 37.778 90 54 1 105 194 484 571 1.56e-12 65.5
Msa0392030 MtrunA17_Chr4g0011471 34.307 137 66 5 15 128 289 424 7.58e-17 77.8
Msa0392030 MtrunA17_Chr4g0063591 34.328 134 67 3 15 128 290 422 9.74e-17 77.4
Msa0392030 MtrunA17_Chr5g0399061 34.028 144 76 4 1 126 290 432 9.77e-17 77.4
Msa0392030 MtrunA17_Chr5g0400371 32.593 135 69 4 15 128 387 520 9.95e-17 77.4
Msa0392030 MtrunA17_Chr4g0054891 30.579 121 70 2 21 128 399 518 1.24e-16 77.4
Msa0392030 MtrunA17_Chr1g0166771 39.175 97 57 2 15 110 267 362 1.83e-16 76.6
Msa0392030 MtrunA17_Chr1g0166771 46.377 69 35 1 105 173 441 507 3.59e-13 67.0
Msa0392030 MtrunA17_Chr5g0399071 34.884 129 65 4 15 125 302 429 1.92e-16 76.6
Msa0392030 MtrunA17_Chr7g0218851 28.462 130 76 3 15 128 322 450 2.52e-16 76.3
Msa0392030 MtrunA17_Chr1g0157611 36.792 106 57 2 15 111 284 388 3.00e-16 76.3
Msa0392030 MtrunA17_Chr8g0379971 30.851 188 106 5 15 189 314 490 3.45e-16 75.9
Msa0392030 MtrunA17_Chr4g0059981 35.000 140 77 5 15 140 305 444 6.88e-16 75.1
Msa0392030 MtrunA17_Chr8g0390331 37.037 108 57 3 12 110 281 386 9.96e-16 74.7
Msa0392030 MtrunA17_Chr3g0142121 27.407 135 84 2 9 129 5 139 1.16e-15 73.2
Msa0392030 MtrunA17_Chr1g0166741 38.144 97 58 2 15 110 303 398 1.53e-15 73.9
Msa0392030 MtrunA17_Chr1g0166741 41.860 86 48 1 105 190 477 560 3.34e-11 61.6
Msa0392030 MtrunA17_Chr7g0214461 26.923 130 78 3 15 128 352 480 3.06e-15 73.2
Msa0392030 MtrunA17_Chr4g0060071 34.127 126 67 3 16 129 38 159 3.79e-15 72.0
Msa0392030 MtrunA17_Chr7g0261791 30.061 163 92 4 9 150 294 455 4.34e-15 72.8
Msa0392030 MtrunA17_Chr7g0261791 36.047 86 53 1 105 190 487 570 4.22e-12 63.9
Msa0392030 MtrunA17_Chr5g0415961 29.921 127 75 2 15 129 312 436 6.00e-15 72.4
Msa0392030 MtrunA17_Chr4g0059971 31.724 145 89 5 2 139 305 446 7.90e-15 72.0
Msa0392030 MtrunA17_Chr8g0362711 34.646 127 64 4 15 129 312 431 9.48e-15 71.6
Msa0392030 MtrunA17_Chr4g0003761 28.934 197 115 5 1 185 286 469 1.07e-14 71.6
Msa0392030 MtrunA17_Chr1g0177611 35.115 131 71 4 15 133 174 302 1.17e-14 71.2
Msa0392030 MtrunA17_Chr3g0133341 29.665 209 124 8 3 194 281 483 1.27e-14 71.2
Msa0392030 MtrunA17_Chr1g0177591 35.115 131 71 4 15 133 303 431 1.58e-14 71.2
Msa0392030 MtrunA17_Chr2g0331511 31.111 180 99 6 15 182 293 459 1.72e-14 71.2
Msa0392030 MtrunA17_Chr1g0213711 30.909 110 71 2 13 118 293 401 3.05e-14 70.5
Msa0392030 MtrunA17_Chr1g0157601 33.962 106 60 2 15 111 283 387 3.08e-14 70.5
Msa0392030 MtrunA17_Chr5g0422881 29.688 128 83 2 15 135 294 421 3.08e-14 70.5
Msa0392030 MtrunA17_Chr4g0059991 30.000 140 84 4 15 140 297 436 5.34e-14 69.7
Msa0392030 MtrunA17_Chr5g0415841 33.981 103 61 2 16 111 191 293 5.56e-14 69.3
Msa0392030 MtrunA17_Chr3g0142091 31.343 134 87 3 4 133 292 424 8.75e-14 68.9
Msa0392030 MtrunA17_Chr1g0166791 40.698 86 49 1 105 190 481 564 1.21e-13 68.6
Msa0392030 MtrunA17_Chr1g0166791 35.714 98 59 3 15 110 300 395 2.59e-13 67.8
Msa0392030 MtrunA17_Chr1g0157621 33.333 105 61 3 15 111 248 351 1.47e-13 68.2
Msa0392030 MtrunA17_Chr8g0379991 39.130 115 65 2 31 140 311 425 2.47e-13 67.8
Msa0392030 MtrunA17_Chr2g0331521 35.714 140 75 5 15 140 293 431 3.75e-13 67.0
Msa0392030 MtrunA17_Chr5g0439381 30.469 128 70 3 16 125 299 425 5.32e-13 66.6
Msa0392030 MtrunA17_Chr5g0415791 31.690 142 82 5 13 143 307 444 7.49e-13 66.2
Msa0392030 MtrunA17_Chr7g0261851 35.644 101 61 2 91 191 473 569 1.31e-12 65.5
Msa0392030 MtrunA17_Chr7g0261851 36.364 110 62 2 9 111 292 400 2.13e-11 62.0
Msa0392030 MtrunA17_Chr1g0147631 30.189 106 62 2 15 111 296 398 2.79e-12 64.7
Msa0392030 MtrunA17_Chr8g0362801 33.077 130 73 5 16 133 193 320 4.99e-12 63.9
Msa0392030 MtrunA17_Chr2g0325961 30.827 133 84 3 9 133 287 419 6.01e-12 63.5
Msa0392030 MtrunA17_Chr1g0193391 31.452 124 70 3 15 124 284 406 8.29e-12 63.2
Msa0392030 MtrunA17_Chr8g0362781 30.088 113 74 2 2 111 305 415 1.19e-11 62.8
Msa0392030 MtrunA17_Chr1g0177631 33.588 131 73 4 15 133 174 302 1.24e-11 62.8
Msa0392030 MtrunA17_Chr7g0271221 30.769 130 76 3 9 125 279 407 1.31e-11 62.8
Msa0392030 MtrunA17_Chr2g0325951 27.007 137 83 3 9 128 285 421 2.25e-11 62.0
Msa0392030 MtrunA17_Chr4g0069581 27.160 162 112 3 1 159 243 401 2.35e-11 62.0
Msa0392030 MtrunA17_Chr7g0261721 34.884 86 54 1 105 190 118 201 8.12e-11 59.3
Msa0392030 MtrunA17_Chr7g0235521 31.068 103 70 1 10 111 192 294 9.13e-11 60.1
Msa0392030 MtrunA17_Chr7g0240151 31.068 103 70 1 10 111 192 294 9.27e-11 60.1
Msa0392030 MtrunA17_Chr7g0240181 31.068 103 70 1 10 111 192 294 9.48e-11 60.1
Msa0392030 MtrunA17_Chr7g0240211 31.068 103 70 1 10 111 192 294 9.57e-11 60.1
Msa0392030 MtrunA17_Chr7g0261821 43.284 67 38 0 128 194 1 67 9.69e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392030 AT1G22540.1 53.279 122 46 3 16 133 294 408 8.50e-36 131
Msa0392030 AT1G22540.1 60.000 90 34 1 105 194 469 556 3.80e-27 107
Msa0392030 AT1G72125.1 56.701 97 42 0 15 111 291 387 6.04e-33 124
Msa0392030 AT1G72125.1 56.098 82 36 0 110 191 476 557 3.60e-18 82.0
Msa0392030 AT1G72120.1 53.398 103 48 0 9 111 281 383 1.42e-32 122
Msa0392030 AT1G72120.1 58.537 82 34 0 110 191 472 553 1.51e-17 80.1
Msa0392030 AT1G72130.2 46.032 126 46 2 15 128 167 282 5.40e-32 119
Msa0392030 AT1G72130.2 50.588 85 42 0 110 194 335 419 8.79e-21 89.0
Msa0392030 AT1G72130.3 46.032 126 46 2 15 128 167 282 5.40e-32 119
Msa0392030 AT1G72130.3 50.588 85 42 0 110 194 335 419 8.79e-21 89.0
Msa0392030 AT1G72130.1 46.032 126 46 2 15 128 285 400 1.43e-31 120
Msa0392030 AT1G72130.1 50.588 85 42 0 110 194 453 537 1.42e-20 89.0
Msa0392030 AT1G22550.1 51.546 97 44 1 15 111 297 390 5.19e-28 110
Msa0392030 AT1G22550.1 50.575 87 41 1 105 191 476 560 4.02e-20 87.8
Msa0392030 AT1G72140.1 51.456 103 40 1 9 111 291 383 4.00e-27 107
Msa0392030 AT1G72140.1 54.321 81 37 0 110 190 472 552 2.66e-21 91.3
Msa0392030 AT1G22570.2 39.695 131 63 2 10 128 260 386 8.63e-25 100
Msa0392030 AT1G22570.2 57.471 87 32 2 105 191 443 524 1.41e-16 77.4
Msa0392030 AT1G22570.1 39.695 131 63 2 10 128 297 423 1.00e-24 100
Msa0392030 AT1G22570.1 57.471 87 32 2 105 191 480 561 1.90e-16 77.0
Msa0392030 AT5G01180.2 40.458 131 58 3 15 126 294 423 1.01e-24 100
Msa0392030 AT5G01180.2 41.573 89 50 1 105 193 480 566 7.28e-15 72.4
Msa0392030 AT5G01180.3 40.458 131 58 3 15 126 294 423 1.01e-24 100
Msa0392030 AT5G01180.3 41.573 89 50 1 105 193 480 566 7.28e-15 72.4
Msa0392030 AT5G01180.1 40.458 131 58 3 15 126 294 423 1.01e-24 100
Msa0392030 AT5G01180.1 41.573 89 50 1 105 193 480 566 7.28e-15 72.4
Msa0392030 AT3G54450.1 38.462 130 69 4 15 135 274 401 1.20e-23 97.8
Msa0392030 AT3G54450.1 39.080 87 50 2 105 191 460 543 2.09e-15 73.9
Msa0392030 AT5G14940.1 43.243 111 58 2 28 133 289 399 1.83e-23 97.4
Msa0392030 AT3G54140.1 36.364 132 66 2 15 128 294 425 2.96e-22 94.0
Msa0392030 AT3G54140.1 40.230 87 50 1 105 191 480 564 6.00e-14 69.7
Msa0392030 AT3G54140.2 36.364 132 66 2 15 128 294 425 2.96e-22 94.0
Msa0392030 AT3G54140.2 40.230 87 50 1 105 191 480 564 6.00e-14 69.7
Msa0392030 AT3G01350.1 45.098 102 51 2 36 133 305 405 3.74e-22 93.6
Msa0392030 AT3G01350.1 41.558 77 44 1 110 185 470 546 9.13e-11 60.5
Msa0392030 AT1G62200.1 36.567 134 75 3 15 139 326 458 8.56e-22 92.4
Msa0392030 AT1G62200.2 36.567 134 75 3 15 139 355 487 1.08e-21 92.4
Msa0392030 AT1G62200.3 36.567 134 75 3 15 139 369 501 1.15e-21 92.0
Msa0392030 AT2G02040.1 31.034 145 78 4 15 141 312 452 7.30e-21 89.7
Msa0392030 AT2G02040.1 36.667 90 55 1 105 194 498 585 3.62e-12 64.7
Msa0392030 AT2G02020.1 39.823 113 64 2 24 133 291 402 2.63e-20 88.2
Msa0392030 AT1G59740.1 31.081 148 89 4 15 149 315 462 1.02e-19 86.7
Msa0392030 AT5G46050.1 39.583 96 57 1 15 110 301 395 2.32e-19 85.5
Msa0392030 AT5G46050.2 39.583 96 57 1 15 110 189 283 2.60e-19 85.1
Msa0392030 AT3G53960.1 34.118 170 93 7 2 158 292 455 7.42e-19 84.0
Msa0392030 AT3G53960.1 36.782 87 51 3 105 190 490 573 5.52e-11 61.2
Msa0392030 AT1G18880.1 31.410 156 78 5 6 140 281 428 1.00e-18 83.6
Msa0392030 AT5G46040.1 38.542 96 58 1 15 110 301 395 1.47e-18 83.2
Msa0392030 AT2G40460.1 42.857 105 54 2 15 118 295 394 3.31e-18 82.0
Msa0392030 AT2G40460.1 39.535 86 50 1 105 190 472 555 2.16e-13 68.2
Msa0392030 AT2G37900.1 32.877 146 82 6 15 147 305 447 1.94e-17 80.1
Msa0392030 AT2G37900.2 31.646 158 86 7 15 159 226 374 2.72e-17 79.3
Msa0392030 AT1G32450.1 33.333 111 60 2 31 128 337 446 4.02e-17 79.0
Msa0392030 AT1G33440.1 30.769 130 85 2 15 139 307 436 7.73e-17 78.2
Msa0392030 AT3G21670.1 39.048 105 54 2 16 111 298 401 1.53e-16 77.4
Msa0392030 AT1G69870.1 32.479 117 76 1 2 118 322 435 1.58e-16 77.4
Msa0392030 AT1G69870.1 38.750 80 49 0 111 190 515 594 8.73e-12 63.5
Msa0392030 AT1G52190.1 28.061 196 102 7 11 185 289 466 5.89e-16 75.9
Msa0392030 AT5G19640.1 29.231 130 82 4 8 128 321 449 8.89e-16 75.1
Msa0392030 AT1G27080.2 29.808 104 73 0 8 111 245 348 1.15e-15 74.7
Msa0392030 AT1G27080.2 34.940 83 54 0 111 193 427 509 8.74e-11 60.5
Msa0392030 AT1G27080.1 29.808 104 73 0 8 111 287 390 1.27e-15 74.7
Msa0392030 AT1G27080.1 34.940 83 54 0 111 193 469 551 9.54e-11 60.5
Msa0392030 AT5G62680.1 31.818 132 78 3 15 134 315 446 8.66e-15 72.4
Msa0392030 AT4G21680.1 30.709 127 72 3 17 128 309 434 8.81e-15 72.4
Msa0392030 AT2G26690.2 37.383 107 56 2 15 111 257 362 3.01e-14 70.9
Msa0392030 AT2G26690.1 32.847 137 70 3 15 130 290 425 3.09e-14 70.9
Msa0392030 AT2G26690.3 37.383 107 56 2 15 111 245 350 3.28e-14 70.5
Msa0392030 AT5G11570.1 34.444 90 58 1 23 111 232 321 4.73e-14 70.1
Msa0392030 AT1G69850.1 28.289 152 88 4 13 147 308 455 1.06e-13 69.3
Msa0392030 AT3G47960.1 31.667 120 73 2 15 125 331 450 5.63e-13 67.0
Msa0392030 AT3G45700.1 31.496 127 75 3 15 129 282 408 1.47e-12 65.9
Msa0392030 AT3G45650.1 33.028 109 67 1 9 111 275 383 1.55e-12 65.9
Msa0392030 AT3G45650.2 33.028 109 67 1 9 111 275 383 1.61e-12 65.9
Msa0392030 AT3G16180.1 29.286 140 83 5 15 140 294 431 2.24e-12 65.5
Msa0392030 AT1G12110.1 33.333 120 64 3 28 138 323 435 2.71e-12 65.1
Msa0392030 AT1G27040.1 30.275 109 63 2 33 129 316 423 3.00e-12 65.1
Msa0392030 AT1G27040.2 30.275 109 63 2 33 129 312 419 3.05e-12 64.7
Msa0392030 AT1G27040.3 30.275 109 63 2 33 129 284 391 3.24e-12 64.7
Msa0392030 AT3G45710.1 33.577 137 80 3 15 140 287 423 4.17e-12 64.3
Msa0392030 AT3G45660.2 34.783 92 59 1 21 111 312 403 2.32e-11 62.4
Msa0392030 AT3G45660.1 34.783 92 59 1 21 111 291 382 2.65e-11 62.0
Msa0392030 AT3G45660.3 34.783 92 59 1 21 111 291 382 2.65e-11 62.0

Find 38 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTATTTGTATGCTCTTC+TGG 0.194541 3_2:+4977650 Msa0392030:CDS
TCCTCAGGCTTGTTCCATTA+TGG 0.216674 3_2:+4977206 Msa0392030:CDS
CTCATCTCTGCTATTCAAAA+AGG 0.226888 3_2:+4977570 Msa0392030:CDS
TGAAATGAAATATAGGGTTT+TGG 0.258830 3_2:+4976296 None:intergenic
CCTCAGGCTTGTTCCATTAT+GGG 0.292659 3_2:+4977207 Msa0392030:CDS
TGGTGGAATTATCCGCCTTC+TGG 0.334355 3_2:+4977685 Msa0392030:CDS
GAAATGGTGAAATGAAATAT+AGG 0.339392 3_2:+4976289 None:intergenic
ATTAAACTCGTAGCCCATAA+TGG 0.391522 3_2:-4977220 None:intergenic
AACACCTTGTTTGGTATAGA+AGG 0.395111 3_2:-4977272 None:intergenic
GTCCAACGTAACACCTTGTT+TGG 0.415108 3_2:-4977281 None:intergenic
CCCACACTTCTTAATTCATC+CGG 0.418299 3_2:-4977495 None:intergenic
AACAATAGAGAGACTGATAA+AGG 0.421472 3_2:-4977350 None:intergenic
AAATGGTGAAATGAAATATA+GGG 0.448148 3_2:+4976290 None:intergenic
ATCAAACGGATCAAAGGAAA+AGG 0.457585 3_2:+4977141 Msa0392030:CDS
ATAAAGGATTGAAGAGAAGC+AGG 0.477356 3_2:-4977334 None:intergenic
TTGCTATAGGAACGATAATA+CGG 0.495632 3_2:-4977393 None:intergenic
TCAAACGGATCAAAGGAAAA+GGG 0.500687 3_2:+4977142 Msa0392030:CDS
AAAGCATTAATTGCATCAAA+CGG 0.521812 3_2:+4977127 Msa0392030:CDS
AACAAGGTGTTACGTTGGAC+AGG 0.536170 3_2:+4977284 Msa0392030:CDS
ACGATAATACGGTCATAGAC+AGG 0.551744 3_2:-4977382 None:intergenic
GTATAGATGGGCGTGATGGA+TGG 0.551872 3_2:+4977598 Msa0392030:CDS
AATTGCATCAAACGGATCAA+AGG 0.558504 3_2:+4977135 Msa0392030:CDS
CCCGGATGAATTAAGAAGTG+TGG 0.560345 3_2:+4977494 Msa0392030:CDS
CTCTGAAGTTGAAGAAGCAA+AGG 0.560670 3_2:+4977180 Msa0392030:CDS
AAGAAGCAAAGGCAATCCTC+AGG 0.570803 3_2:+4977191 Msa0392030:CDS
TAAAGGATTGAAGAGAAGCA+GGG 0.588599 3_2:-4977333 None:intergenic
AAAGGATTGAAGAGAAGCAG+GGG 0.591006 3_2:-4977332 None:intergenic
ACAAGTATAGATGGGCGTGA+TGG 0.597206 3_2:+4977594 Msa0392030:CDS
CCACACTTCTTAATTCATCC+GGG 0.597995 3_2:-4977494 None:intergenic
CCGGATGAATTAAGAAGTGT+GGG 0.606569 3_2:+4977495 Msa0392030:CDS
TCTGGCTGCTCTTAGCGTGG+TGG 0.628487 3_2:+4977668 Msa0392030:CDS
CAAACGGATCAAAGGAAAAG+GGG 0.634950 3_2:+4977143 Msa0392030:CDS
TCTACCTTCTATACCAAACA+AGG 0.638858 3_2:+4977268 Msa0392030:CDS
TACCAAACAAGGTGTTACGT+TGG 0.646717 3_2:+4977279 Msa0392030:CDS
TCTTCTGGCTGCTCTTAGCG+TGG 0.662427 3_2:+4977665 Msa0392030:CDS
CCCATAATGGAACAAGCCTG+AGG 0.694855 3_2:-4977207 None:intergenic
AAGGATTGAAGAGAAGCAGG+GGG 0.729188 3_2:-4977331 None:intergenic
AGAAGACTGAGAAAACACAA+TGG 0.758040 3_2:-4977248 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTTAAAAATAGATTT+TGG - chr3_2:4976666-4976685 None:intergenic 10.0%
!! TTTAAAAAAGTTATAAGAAA+CGG + chr3_2:4976675-4976694 Msa0392030:intron 10.0%
!! AGAAATTGTATAATTTATTT+AGG - chr3_2:4977003-4977022 None:intergenic 10.0%
!!! ACTTTTTTAAAAATAGATTT+TGG - chr3_2:4976666-4976685 None:intergenic 10.0%
!! TTTAAAAAAGTTATAAGAAA+CGG + chr3_2:4976675-4976694 Msa0392030:intron 10.0%
!! AGAAATTGTATAATTTATTT+AGG - chr3_2:4977003-4977022 None:intergenic 10.0%
!! TTAAAAAAGTTATAAGAAAC+GGG + chr3_2:4976676-4976695 Msa0392030:intron 15.0%
!! TTAAAAAAGTTATAAGAAAC+GGG + chr3_2:4976676-4976695 Msa0392030:intron 15.0%
!! TAAAAAAGTTATAAGAAACG+GGG + chr3_2:4976677-4976696 Msa0392030:intron 20.0%
!! TGTAGAAAGAAAGAAAAAAA+TGG + chr3_2:4976781-4976800 Msa0392030:intron 20.0%
!! AAACATAAACTATTCTAACA+TGG - chr3_2:4976864-4976883 None:intergenic 20.0%
!! TATATTCTTGCATTTGTATT+GGG + chr3_2:4977056-4977075 Msa0392030:intron 20.0%
!! TAAAAAAGTTATAAGAAACG+GGG + chr3_2:4976677-4976696 Msa0392030:intron 20.0%
!! TGTAGAAAGAAAGAAAAAAA+TGG + chr3_2:4976781-4976800 Msa0392030:intron 20.0%
!! AAACATAAACTATTCTAACA+TGG - chr3_2:4976864-4976883 None:intergenic 20.0%
!! TATATTCTTGCATTTGTATT+GGG + chr3_2:4977056-4977075 Msa0392030:intron 20.0%
! AGCAATTAGCAATTAAAAAC+TGG + chr3_2:4976352-4976371 Msa0392030:intron 25.0%
! ATTAGCAATTAAAAACTGGA+CGG + chr3_2:4976356-4976375 Msa0392030:intron 25.0%
! GCAATTAACATCATGTAATA+AGG + chr3_2:4976392-4976411 Msa0392030:intron 25.0%
! GTCATTCTAAGTATTTGATT+TGG - chr3_2:4976549-4976568 None:intergenic 25.0%
! AAAAAAGTTATAAGAAACGG+GGG + chr3_2:4976678-4976697 Msa0392030:intron 25.0%
!!! TTTGTTTTGGCCTAATTAAA+TGG + chr3_2:4976736-4976755 Msa0392030:intron 25.0%
! AGAAGGAAATCCATTTAATT+AGG - chr3_2:4976749-4976768 None:intergenic 25.0%
!! AATTAAATGGATTTCCTTCT+CGG + chr3_2:4976749-4976768 Msa0392030:intron 25.0%
!! TTTTCTTTCTTTCTACAACT+CGG - chr3_2:4976778-4976797 None:intergenic 25.0%
! TATAACTTGATATGACTACT+AGG - chr3_2:4976817-4976836 None:intergenic 25.0%
! AGAAAAGTTCAATTCTAACA+TGG - chr3_2:4976888-4976907 None:intergenic 25.0%
! AATCTCATATATCGTGAATA+TGG - chr3_2:4977027-4977046 None:intergenic 25.0%
! GTATATTCTTGCATTTGTAT+TGG + chr3_2:4977055-4977074 Msa0392030:intron 25.0%
! ATATTCTTGCATTTGTATTG+GGG + chr3_2:4977057-4977076 Msa0392030:intron 25.0%
!! AAAGCATTAATTGCATCAAA+CGG + chr3_2:4977127-4977146 Msa0392030:CDS 25.0%
!! TCCCTCTATTTAAGTATTTT+TGG + chr3_2:4977522-4977541 Msa0392030:CDS 25.0%
! CCCAAAAATACTTAAATAGA+GGG - chr3_2:4977526-4977545 None:intergenic 25.0%
!! CCCTCTATTTAAGTATTTTT+GGG + chr3_2:4977523-4977542 Msa0392030:CDS 25.0%
!!! CCTCTATTTAAGTATTTTTG+GGG + chr3_2:4977524-4977543 Msa0392030:CDS 25.0%
!!! TATTTAAGTATTTTTGGGGT+TGG + chr3_2:4977528-4977547 Msa0392030:CDS 25.0%
!!! ATTTAAGTATTTTTGGGGTT+GGG + chr3_2:4977529-4977548 Msa0392030:CDS 25.0%
! AAAAAGGAACAAGTATAGAT+GGG + chr3_2:4977586-4977605 Msa0392030:CDS 25.0%
! AGCAATTAGCAATTAAAAAC+TGG + chr3_2:4976352-4976371 Msa0392030:intron 25.0%
! ATTAGCAATTAAAAACTGGA+CGG + chr3_2:4976356-4976375 Msa0392030:intron 25.0%
! GCAATTAACATCATGTAATA+AGG + chr3_2:4976392-4976411 Msa0392030:intron 25.0%
! GTCATTCTAAGTATTTGATT+TGG - chr3_2:4976549-4976568 None:intergenic 25.0%
! AAAAAAGTTATAAGAAACGG+GGG + chr3_2:4976678-4976697 Msa0392030:intron 25.0%
!!! TTTGTTTTGGCCTAATTAAA+TGG + chr3_2:4976736-4976755 Msa0392030:intron 25.0%
! AGAAGGAAATCCATTTAATT+AGG - chr3_2:4976749-4976768 None:intergenic 25.0%
!! AATTAAATGGATTTCCTTCT+CGG + chr3_2:4976749-4976768 Msa0392030:intron 25.0%
!! TTTTCTTTCTTTCTACAACT+CGG - chr3_2:4976778-4976797 None:intergenic 25.0%
! TATAACTTGATATGACTACT+AGG - chr3_2:4976817-4976836 None:intergenic 25.0%
! AGAAAAGTTCAATTCTAACA+TGG - chr3_2:4976888-4976907 None:intergenic 25.0%
! AATCTCATATATCGTGAATA+TGG - chr3_2:4977027-4977046 None:intergenic 25.0%
! GTATATTCTTGCATTTGTAT+TGG + chr3_2:4977055-4977074 Msa0392030:intron 25.0%
! ATATTCTTGCATTTGTATTG+GGG + chr3_2:4977057-4977076 Msa0392030:intron 25.0%
!! AAAGCATTAATTGCATCAAA+CGG + chr3_2:4977127-4977146 Msa0392030:CDS 25.0%
!! TCCCTCTATTTAAGTATTTT+TGG + chr3_2:4977522-4977541 Msa0392030:CDS 25.0%
! CCCAAAAATACTTAAATAGA+GGG - chr3_2:4977526-4977545 None:intergenic 25.0%
!! CCCTCTATTTAAGTATTTTT+GGG + chr3_2:4977523-4977542 Msa0392030:CDS 25.0%
!!! CCTCTATTTAAGTATTTTTG+GGG + chr3_2:4977524-4977543 Msa0392030:CDS 25.0%
!!! TATTTAAGTATTTTTGGGGT+TGG + chr3_2:4977528-4977547 Msa0392030:CDS 25.0%
!!! ATTTAAGTATTTTTGGGGTT+GGG + chr3_2:4977529-4977548 Msa0392030:CDS 25.0%
! AAAAAGGAACAAGTATAGAT+GGG + chr3_2:4977586-4977605 Msa0392030:CDS 25.0%
AAAACTATGGAGAGAAAATG+GGG - chr3_2:4976719-4976738 None:intergenic 30.0%
CAAAACTATGGAGAGAAAAT+GGG - chr3_2:4976720-4976739 None:intergenic 30.0%
ACAAAACTATGGAGAGAAAA+TGG - chr3_2:4976721-4976740 None:intergenic 30.0%
!!! TTCTCTCCATAGTTTTGTTT+TGG + chr3_2:4976723-4976742 Msa0392030:intron 30.0%
ATTAGGCCAAAACAAAACTA+TGG - chr3_2:4976732-4976751 None:intergenic 30.0%
TTACTATCATGGTTCTTACA+TGG - chr3_2:4976972-4976991 None:intergenic 30.0%
AACAATAGAGAGACTGATAA+AGG - chr3_2:4977353-4977372 None:intergenic 30.0%
TTGCTATAGGAACGATAATA+CGG - chr3_2:4977396-4977415 None:intergenic 30.0%
!!! GAATTCTTTTTTCTGTGATC+AGG + chr3_2:4977470-4977489 Msa0392030:intron 30.0%
CCCCAAAAATACTTAAATAG+AGG - chr3_2:4977527-4977546 None:intergenic 30.0%
CAAAAAGGAACAAGTATAGA+TGG + chr3_2:4977585-4977604 Msa0392030:CDS 30.0%
TGATTATTTGTATGCTCTTC+TGG + chr3_2:4977650-4977669 Msa0392030:CDS 30.0%
!! AGATTTTGAGAAAAACCAGA+AGG - chr3_2:4977703-4977722 None:intergenic 30.0%
AAAACTATGGAGAGAAAATG+GGG - chr3_2:4976719-4976738 None:intergenic 30.0%
CAAAACTATGGAGAGAAAAT+GGG - chr3_2:4976720-4976739 None:intergenic 30.0%
ACAAAACTATGGAGAGAAAA+TGG - chr3_2:4976721-4976740 None:intergenic 30.0%
!!! TTCTCTCCATAGTTTTGTTT+TGG + chr3_2:4976723-4976742 Msa0392030:intron 30.0%
ATTAGGCCAAAACAAAACTA+TGG - chr3_2:4976732-4976751 None:intergenic 30.0%
TTACTATCATGGTTCTTACA+TGG - chr3_2:4976972-4976991 None:intergenic 30.0%
AACAATAGAGAGACTGATAA+AGG - chr3_2:4977353-4977372 None:intergenic 30.0%
TTGCTATAGGAACGATAATA+CGG - chr3_2:4977396-4977415 None:intergenic 30.0%
!!! GAATTCTTTTTTCTGTGATC+AGG + chr3_2:4977470-4977489 Msa0392030:intron 30.0%
CCCCAAAAATACTTAAATAG+AGG - chr3_2:4977527-4977546 None:intergenic 30.0%
CAAAAAGGAACAAGTATAGA+TGG + chr3_2:4977585-4977604 Msa0392030:CDS 30.0%
TGATTATTTGTATGCTCTTC+TGG + chr3_2:4977650-4977669 Msa0392030:CDS 30.0%
!! AGATTTTGAGAAAAACCAGA+AGG - chr3_2:4977703-4977722 None:intergenic 30.0%
CATGATGTTAATTGCTAAGC+CGG - chr3_2:4976387-4976406 None:intergenic 35.0%
AAAATGGGGTCTCCTTATTA+CGG - chr3_2:4976705-4976724 None:intergenic 35.0%
TTGATATGACTACTAGGAGA+AGG - chr3_2:4976811-4976830 None:intergenic 35.0%
! AGGACAGAGTATTACTATCA+TGG - chr3_2:4976983-4977002 None:intergenic 35.0%
AATTGCATCAAACGGATCAA+AGG + chr3_2:4977135-4977154 Msa0392030:CDS 35.0%
ATCAAACGGATCAAAGGAAA+AGG + chr3_2:4977141-4977160 Msa0392030:CDS 35.0%
TCAAACGGATCAAAGGAAAA+GGG + chr3_2:4977142-4977161 Msa0392030:CDS 35.0%
ATTAAACTCGTAGCCCATAA+TGG - chr3_2:4977223-4977242 None:intergenic 35.0%
AGAAGACTGAGAAAACACAA+TGG - chr3_2:4977251-4977270 None:intergenic 35.0%
TCTACCTTCTATACCAAACA+AGG + chr3_2:4977268-4977287 Msa0392030:CDS 35.0%
! AACACCTTGTTTGGTATAGA+AGG - chr3_2:4977275-4977294 None:intergenic 35.0%
TAAAGGATTGAAGAGAAGCA+GGG - chr3_2:4977336-4977355 None:intergenic 35.0%
ATAAAGGATTGAAGAGAAGC+AGG - chr3_2:4977337-4977356 None:intergenic 35.0%
ATGCTACAGAGAATTGAACT+CGG + chr3_2:4977448-4977467 Msa0392030:intron 35.0%
CTCATCTCTGCTATTCAAAA+AGG + chr3_2:4977570-4977589 Msa0392030:CDS 35.0%
!! TTTTGAGAAAAACCAGAAGG+CGG - chr3_2:4977700-4977719 None:intergenic 35.0%
CATGATGTTAATTGCTAAGC+CGG - chr3_2:4976387-4976406 None:intergenic 35.0%
AAAATGGGGTCTCCTTATTA+CGG - chr3_2:4976705-4976724 None:intergenic 35.0%
TTGATATGACTACTAGGAGA+AGG - chr3_2:4976811-4976830 None:intergenic 35.0%
! AGGACAGAGTATTACTATCA+TGG - chr3_2:4976983-4977002 None:intergenic 35.0%
AATTGCATCAAACGGATCAA+AGG + chr3_2:4977135-4977154 Msa0392030:CDS 35.0%
ATCAAACGGATCAAAGGAAA+AGG + chr3_2:4977141-4977160 Msa0392030:CDS 35.0%
TCAAACGGATCAAAGGAAAA+GGG + chr3_2:4977142-4977161 Msa0392030:CDS 35.0%
ATTAAACTCGTAGCCCATAA+TGG - chr3_2:4977223-4977242 None:intergenic 35.0%
AGAAGACTGAGAAAACACAA+TGG - chr3_2:4977251-4977270 None:intergenic 35.0%
TCTACCTTCTATACCAAACA+AGG + chr3_2:4977268-4977287 Msa0392030:CDS 35.0%
! AACACCTTGTTTGGTATAGA+AGG - chr3_2:4977275-4977294 None:intergenic 35.0%
TAAAGGATTGAAGAGAAGCA+GGG - chr3_2:4977336-4977355 None:intergenic 35.0%
ATAAAGGATTGAAGAGAAGC+AGG - chr3_2:4977337-4977356 None:intergenic 35.0%
ATGCTACAGAGAATTGAACT+CGG + chr3_2:4977448-4977467 Msa0392030:intron 35.0%
CTCATCTCTGCTATTCAAAA+AGG + chr3_2:4977570-4977589 Msa0392030:CDS 35.0%
!! TTTTGAGAAAAACCAGAAGG+CGG - chr3_2:4977700-4977719 None:intergenic 35.0%
!!! GGGTTTTGGGTTTTAACAAG+AGG + chr3_2:4976310-4976329 Msa0392030:CDS 40.0%
!! TGGGTTTTAACAAGAGGAAG+AGG + chr3_2:4976316-4976335 Msa0392030:CDS 40.0%
CAAACGGATCAAAGGAAAAG+GGG + chr3_2:4977143-4977162 Msa0392030:CDS 40.0%
!! CTCTGAAGTTGAAGAAGCAA+AGG + chr3_2:4977180-4977199 Msa0392030:CDS 40.0%
! TACCAAACAAGGTGTTACGT+TGG + chr3_2:4977279-4977298 Msa0392030:CDS 40.0%
! TTGGACAGGAAAATTTTGCC+TGG + chr3_2:4977298-4977317 Msa0392030:CDS 40.0%
AAAGGATTGAAGAGAAGCAG+GGG - chr3_2:4977335-4977354 None:intergenic 40.0%
ACGATAATACGGTCATAGAC+AGG - chr3_2:4977385-4977404 None:intergenic 40.0%
! CCAGTAAAGGTTCTTGCTAT+AGG - chr3_2:4977409-4977428 None:intergenic 40.0%
CCTATAGCAAGAACCTTTAC+TGG + chr3_2:4977406-4977425 Msa0392030:intron 40.0%
!!! TTTTTTCTGTGATCAGGTCC+CGG + chr3_2:4977476-4977495 Msa0392030:intron 40.0%
CCACACTTCTTAATTCATCC+GGG - chr3_2:4977497-4977516 None:intergenic 40.0%
CCCACACTTCTTAATTCATC+CGG - chr3_2:4977498-4977517 None:intergenic 40.0%
! CCGGATGAATTAAGAAGTGT+GGG + chr3_2:4977495-4977514 Msa0392030:CDS 40.0%
!!! GGGTTTTGGGTTTTAACAAG+AGG + chr3_2:4976310-4976329 Msa0392030:CDS 40.0%
!! TGGGTTTTAACAAGAGGAAG+AGG + chr3_2:4976316-4976335 Msa0392030:CDS 40.0%
CAAACGGATCAAAGGAAAAG+GGG + chr3_2:4977143-4977162 Msa0392030:CDS 40.0%
!! CTCTGAAGTTGAAGAAGCAA+AGG + chr3_2:4977180-4977199 Msa0392030:CDS 40.0%
! TACCAAACAAGGTGTTACGT+TGG + chr3_2:4977279-4977298 Msa0392030:CDS 40.0%
! TTGGACAGGAAAATTTTGCC+TGG + chr3_2:4977298-4977317 Msa0392030:CDS 40.0%
AAAGGATTGAAGAGAAGCAG+GGG - chr3_2:4977335-4977354 None:intergenic 40.0%
ACGATAATACGGTCATAGAC+AGG - chr3_2:4977385-4977404 None:intergenic 40.0%
! CCAGTAAAGGTTCTTGCTAT+AGG - chr3_2:4977409-4977428 None:intergenic 40.0%
CCTATAGCAAGAACCTTTAC+TGG + chr3_2:4977406-4977425 Msa0392030:intron 40.0%
!!! TTTTTTCTGTGATCAGGTCC+CGG + chr3_2:4977476-4977495 Msa0392030:intron 40.0%
CCACACTTCTTAATTCATCC+GGG - chr3_2:4977497-4977516 None:intergenic 40.0%
CCCACACTTCTTAATTCATC+CGG - chr3_2:4977498-4977517 None:intergenic 40.0%
! CCGGATGAATTAAGAAGTGT+GGG + chr3_2:4977495-4977514 Msa0392030:CDS 40.0%
TAAAAACTGGACGGTCGAAC+CGG + chr3_2:4976365-4976384 Msa0392030:intron 45.0%
AAGAAGCAAAGGCAATCCTC+AGG + chr3_2:4977191-4977210 Msa0392030:CDS 45.0%
! TCCTCAGGCTTGTTCCATTA+TGG + chr3_2:4977206-4977225 Msa0392030:CDS 45.0%
! CCTCAGGCTTGTTCCATTAT+GGG + chr3_2:4977207-4977226 Msa0392030:CDS 45.0%
GTCCAACGTAACACCTTGTT+TGG - chr3_2:4977284-4977303 None:intergenic 45.0%
! AACAAGGTGTTACGTTGGAC+AGG + chr3_2:4977284-4977303 Msa0392030:CDS 45.0%
AAGGATTGAAGAGAAGCAGG+GGG - chr3_2:4977334-4977353 None:intergenic 45.0%
ACCTTTACTGGCAAACCATC+TGG + chr3_2:4977418-4977437 Msa0392030:intron 45.0%
TGTAGCATAGTGATGCCAGA+TGG - chr3_2:4977436-4977455 None:intergenic 45.0%
CCCGGATGAATTAAGAAGTG+TGG + chr3_2:4977494-4977513 Msa0392030:CDS 45.0%
ACAAGTATAGATGGGCGTGA+TGG + chr3_2:4977594-4977613 Msa0392030:CDS 45.0%
TAAAAACTGGACGGTCGAAC+CGG + chr3_2:4976365-4976384 Msa0392030:intron 45.0%
AAGAAGCAAAGGCAATCCTC+AGG + chr3_2:4977191-4977210 Msa0392030:CDS 45.0%
! TCCTCAGGCTTGTTCCATTA+TGG + chr3_2:4977206-4977225 Msa0392030:CDS 45.0%
! CCTCAGGCTTGTTCCATTAT+GGG + chr3_2:4977207-4977226 Msa0392030:CDS 45.0%
GTCCAACGTAACACCTTGTT+TGG - chr3_2:4977284-4977303 None:intergenic 45.0%
! AACAAGGTGTTACGTTGGAC+AGG + chr3_2:4977284-4977303 Msa0392030:CDS 45.0%
AAGGATTGAAGAGAAGCAGG+GGG - chr3_2:4977334-4977353 None:intergenic 45.0%
ACCTTTACTGGCAAACCATC+TGG + chr3_2:4977418-4977437 Msa0392030:intron 45.0%
TGTAGCATAGTGATGCCAGA+TGG - chr3_2:4977436-4977455 None:intergenic 45.0%
CCCGGATGAATTAAGAAGTG+TGG + chr3_2:4977494-4977513 Msa0392030:CDS 45.0%
ACAAGTATAGATGGGCGTGA+TGG + chr3_2:4977594-4977613 Msa0392030:CDS 45.0%
AGAAACGGGGGACCGTAATA+AGG + chr3_2:4976690-4976709 Msa0392030:intron 50.0%
CTACAACTCGGTATCCGAGA+AGG - chr3_2:4976766-4976785 None:intergenic 50.0%
! CCCATAATGGAACAAGCCTG+AGG - chr3_2:4977210-4977229 None:intergenic 50.0%
! GCAGGGGGTACATAAAAACC+AGG - chr3_2:4977319-4977338 None:intergenic 50.0%
! GCCAGATGGTTTGCCAGTAA+AGG - chr3_2:4977422-4977441 None:intergenic 50.0%
! GTATAGATGGGCGTGATGGA+TGG + chr3_2:4977598-4977617 Msa0392030:CDS 50.0%
TGGTGGAATTATCCGCCTTC+TGG + chr3_2:4977685-4977704 Msa0392030:CDS 50.0%
AGAAACGGGGGACCGTAATA+AGG + chr3_2:4976690-4976709 Msa0392030:intron 50.0%
CTACAACTCGGTATCCGAGA+AGG - chr3_2:4976766-4976785 None:intergenic 50.0%
! CCCATAATGGAACAAGCCTG+AGG - chr3_2:4977210-4977229 None:intergenic 50.0%
! GCAGGGGGTACATAAAAACC+AGG - chr3_2:4977319-4977338 None:intergenic 50.0%
! GCCAGATGGTTTGCCAGTAA+AGG - chr3_2:4977422-4977441 None:intergenic 50.0%
! GTATAGATGGGCGTGATGGA+TGG + chr3_2:4977598-4977617 Msa0392030:CDS 50.0%
TGGTGGAATTATCCGCCTTC+TGG + chr3_2:4977685-4977704 Msa0392030:CDS 50.0%
! TCTTCTGGCTGCTCTTAGCG+TGG + chr3_2:4977665-4977684 Msa0392030:CDS 55.0%
! TCTTCTGGCTGCTCTTAGCG+TGG + chr3_2:4977665-4977684 Msa0392030:CDS 55.0%
TCTGGCTGCTCTTAGCGTGG+TGG + chr3_2:4977668-4977687 Msa0392030:CDS 60.0%
TCTGGCTGCTCTTAGCGTGG+TGG + chr3_2:4977668-4977687 Msa0392030:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 4976300 4977749 4976300 ID=Msa0392030;Name=Msa0392030
chr3_2 mRNA 4976300 4977749 4976300 ID=Msa0392030-mRNA-1;Parent=Msa0392030;Name=Msa0392030-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0|0|0.66|1|1|3|0|194
chr3_2 exon 4976300 4976340 4976300 ID=Msa0392030-mRNA-1:exon:1161;Parent=Msa0392030-mRNA-1
chr3_2 exon 4977117 4977402 4977117 ID=Msa0392030-mRNA-1:exon:1162;Parent=Msa0392030-mRNA-1
chr3_2 exon 4977492 4977749 4977492 ID=Msa0392030-mRNA-1:exon:1163;Parent=Msa0392030-mRNA-1
chr3_2 CDS 4976300 4976340 4976300 ID=Msa0392030-mRNA-1:cds;Parent=Msa0392030-mRNA-1
chr3_2 CDS 4977117 4977402 4977117 ID=Msa0392030-mRNA-1:cds;Parent=Msa0392030-mRNA-1
chr3_2 CDS 4977492 4977749 4977492 ID=Msa0392030-mRNA-1:cds;Parent=Msa0392030-mRNA-1
Gene Sequence

>Msa0392030

ATGAAATATAGGGTTTTGGGTTTTAACAAGAGGAAGAGGATTTTCTTAAACAAAGCATTAATTGCATCAAACGGATCAAAGGAAAAGGGGAAAGTCTGTAGTGTCTCTGAAGTTGAAGAAGCAAAGGCAATCCTCAGGCTTGTTCCATTATGGGCTACGAGTTTAATTTTTGCCATTGTGTTTTCTCAGTCTTCTACCTTCTATACCAAACAAGGTGTTACGTTGGACAGGAAAATTTTGCCTGGTTTTTATGTACCCCCTGCTTCTCTTCAATCCTTTATCAGTCTCTCTATTGTTCTCTTTATTCCTGTCTATGACCGTATTATCGTCCCGGATGAATTAAGAAGTGTGGGTCTTTCCCTCTATTTAAGTATTTTTGGGGTTGGGTGTTTTCTGAGTAGCTTTCTCATCTCTGCTATTCAAAAAGGAACAAGTATAGATGGGCGTGATGGATGGTTTGCAAGTAATCATAATCGAGCACATCTTGATTATTTGTATGCTCTTCTGGCTGCTCTTAGCGTGGTGGAATTATCCGCCTTCTGGTTTTTCTCAAAATCTTATGTTTATAAGAAAACAAGCACATAG
Protein sequence

>Msa0392030

MKYRVLGFNKRKRIFLNKALIASNGSKEKGKVCSVSEVEEAKAILRLVPLWATSLIFAIVFSQSSTFYTKQGVTLDRKILPGFYVPPASLQSFISLSIVLFIPVYDRIIVPDELRSVGLSLYLSIFGVGCFLSSFLISAIQKGTSIDGRDGWFASNHNRAHLDYLYALLAALSVVELSAFWFFSKSYVYKKTST*