AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298480 MtrunA17_Chr4g0059171 97.333 300 8 0 1 300 1 300 0.0 608
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298480 AT5G62840.1 70.260 269 74 2 32 300 35 297 2.12e-138 393
Msa1298480 AT5G62840.2 76.339 224 53 0 77 300 9 232 2.06e-130 370

Find 109 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACCCTCTCTTATTAAT+TGG 0.167996 8_3:-59350402 Msa1298480:three_prime_UTR
TTTGAGCTACATTGTGTAAA+TGG 0.201252 8_3:+59350426 None:intergenic
TTAAACTGACTGAAGATAAT+TGG 0.208203 8_3:-59350867 Msa1298480:three_prime_UTR
AGAATCAGAGTTTGAGAGTA+TGG 0.209979 8_3:-59352419 Msa1298480:CDS
ACCTTATTATACCAGATAAA+TGG 0.215021 8_3:-59350981 Msa1298480:three_prime_UTR
TTTCTTGATGCCCGGGGATT+AGG 0.240707 8_3:-59352080 Msa1298480:CDS
GGAAGACATGGTGGTTGTTC+TGG 0.260928 8_3:+59352631 None:intergenic
GAGGAGGTTGTTGAGTTGTT+TGG 0.273887 8_3:+59352606 None:intergenic
TAAAAGAGCTAATTACAATT+TGG 0.279975 8_3:+59351012 None:intergenic
AGGAGGTTGTTGAGTTGTTT+GGG 0.284336 8_3:+59352607 None:intergenic
GCTATACATGTCCATTTATC+TGG 0.284457 8_3:+59350970 None:intergenic
TCCATTTATCTGGTATAATA+AGG 0.292604 8_3:+59350980 None:intergenic
TTAATTGTAACAATGTCTTT+TGG 0.304219 8_3:-59350452 Msa1298480:three_prime_UTR
GTGATAATAATTGTTGGATT+TGG 0.325911 8_3:-59352285 Msa1298480:CDS
TGATTTCAGTTATATTGTTC+CGG 0.332744 8_3:-59352111 Msa1298480:intron
CGTACTTTGCTTATTTGCTT+TGG 0.336461 8_3:+59350605 None:intergenic
GATAATGGTTTATCTGATAG+AGG 0.351718 8_3:-59352358 Msa1298480:CDS
GTCAATCCTTCAGGCTGGTT+TGG 0.352871 8_3:-59351291 Msa1298480:CDS
CTAATTACAATTTGGTAGCT+TGG 0.355446 8_3:+59351020 None:intergenic
AGTCCACTGGCAATGGCTAC+TGG 0.359432 8_3:+59352496 None:intergenic
CTGTTAATTCTATTACTAGA+AGG 0.363981 8_3:-59352216 Msa1298480:intron
AGGGTTTGACACGTGTTATT+TGG 0.364172 8_3:+59352667 None:intergenic
ACATCTGCAACACTCTCATT+TGG 0.372094 8_3:+59351404 None:intergenic
GGATAACTTGTCAATCCTTC+AGG 0.382464 8_3:-59351300 Msa1298480:CDS
TGAAGTGAGGTTGAAGTTGA+AGG 0.399429 8_3:+59352543 None:intergenic
CGTTATAGTCTCGCCAGATT+CGG 0.401884 8_3:-59351321 Msa1298480:CDS
AATGGCTACTGGGTCTGAAA+TGG 0.406139 8_3:+59352507 None:intergenic
AGATTACTTGTCTTTCAGTT+TGG 0.412826 8_3:-59350555 Msa1298480:three_prime_UTR
CACCAGCGTATTGAGTTTCA+AGG 0.416878 8_3:+59351351 None:intergenic
CAGTACTATCTTGTGAGGTC+TGG 0.429270 8_3:-59352442 Msa1298480:CDS
ATTTGGAGTTCCGTCATCAA+TGG 0.433255 8_3:+59351421 None:intergenic
GAATCAGAGTTTGAGAGTAT+GGG 0.435737 8_3:-59352418 Msa1298480:CDS
ATTCATCGTTGCTTATGATA+AGG 0.437214 8_3:-59352752 Msa1298480:five_prime_UTR
TTCAAGGATTGACATGAGTT+GGG 0.442821 8_3:+59351367 None:intergenic
GCATCAAGAAAGCTGTATTC+CGG 0.443393 8_3:+59352092 None:intergenic
ATTGACAAGTTATCCGAATC+TGG 0.446235 8_3:+59351308 None:intergenic
TTTCAAGGATTGACATGAGT+TGG 0.449172 8_3:+59351366 None:intergenic
CATGAAAATGCATGGAATAG+AGG 0.461728 8_3:-59350786 Msa1298480:three_prime_UTR
TGAGAAGGTGGCGACGGTGG+AGG 0.463378 8_3:+59352587 None:intergenic
TTGATGACCAGAAGCGTTGT+GGG 0.464558 8_3:-59350580 Msa1298480:three_prime_UTR
GCGAAAACCTCTGTGGATAA+TGG 0.469059 8_3:-59352373 Msa1298480:CDS
TAGTGGTAGTCCATCGGTAA+TGG 0.469091 8_3:-59350522 Msa1298480:three_prime_UTR
AATACAGCTTTCTTGATGCC+CGG 0.469191 8_3:-59352088 Msa1298480:CDS
TGCACCTGGTGAAGTTCGCC+AGG 0.480792 8_3:-59351100 Msa1298480:CDS
TTTGGAGTTCCGTCATCAAT+GGG 0.482434 8_3:+59351422 None:intergenic
GGAGAAACAAATATAGTAGC+AGG 0.485495 8_3:-59350745 Msa1298480:three_prime_UTR
CTTCATAAGCACCTAATCCC+CGG 0.488075 8_3:+59352069 None:intergenic
GTGCTTGTGATAATAATTGT+TGG 0.488939 8_3:-59352291 Msa1298480:CDS
ATGGCTACTGGGTCTGAAAT+GGG 0.492102 8_3:+59352508 None:intergenic
ATACAGCTTTCTTGATGCCC+GGG 0.493819 8_3:-59352087 Msa1298480:CDS
GGAGATGGTGAATGCGGTTG+TGG 0.499094 8_3:+59352564 None:intergenic
CTTGTAAGTAGGAATGTCAT+TGG 0.501498 8_3:+59351071 None:intergenic
AGTGGTAGTCCATCGGTAAT+GGG 0.504086 8_3:-59350521 Msa1298480:three_prime_UTR
ATCCTTCAGGCTGGTTTGGT+AGG 0.505388 8_3:-59351287 Msa1298480:CDS
ATCAAGATATATGCTATAGC+AGG 0.510113 8_3:-59350714 Msa1298480:three_prime_UTR
GTCCACTGGCAATGGCTACT+GGG 0.514678 8_3:+59352497 None:intergenic
GAGCATTTATATACAGCAGA+TGG 0.517333 8_3:+59351042 None:intergenic
AACTTGTCAATCCTTCAGGC+TGG 0.518288 8_3:-59351296 Msa1298480:CDS
TTAGTTACCTTCGCAAGTCT+AGG 0.522431 8_3:+59351264 None:intergenic
ATTAAATTCATGAAAATGCA+TGG 0.524111 8_3:-59350794 Msa1298480:three_prime_UTR
GAAGGTGGCGACGGTGGAGG+AGG 0.525530 8_3:+59352590 None:intergenic
ATCGTTGCTTATGATAAGGC+AGG 0.535089 8_3:-59352748 Msa1298480:five_prime_UTR
TGGTGAGAAGGTGGCGACGG+TGG 0.535642 8_3:+59352584 None:intergenic
AGTTGTTTGGGAGGAAGACA+TGG 0.536257 8_3:+59352619 None:intergenic
TTCTGGCTGAGAAAATGAAA+GGG 0.541301 8_3:+59352648 None:intergenic
GATGAAGAGTCCACTGGCAA+TGG 0.543180 8_3:+59352489 None:intergenic
CAGACCTCACAAGATAGTAC+TGG 0.547671 8_3:+59352443 None:intergenic
TTCATAAGCACCTAATCCCC+GGG 0.556032 8_3:+59352070 None:intergenic
TCAACCTGGCGAACTTCACC+AGG 0.560030 8_3:+59351096 None:intergenic
TTTGATGACCAGAAGCGTTG+TGG 0.560922 8_3:-59350581 Msa1298480:three_prime_UTR
GATGGAGGCATCTTGTAAGT+AGG 0.561832 8_3:+59351060 None:intergenic
TTTCTCCAATTAATAAGAGA+GGG 0.564698 8_3:+59350397 None:intergenic
GTTCTGGCTGAGAAAATGAA+AGG 0.568548 8_3:+59352647 None:intergenic
AGGTGACGGAAATGATATTG+AGG 0.568857 8_3:-59350766 Msa1298480:three_prime_UTR
GTTTCTCCAATTAATAAGAG+AGG 0.570676 8_3:+59350396 None:intergenic
CGGGGATTAGGTGCTTATGA+AGG 0.572396 8_3:-59352068 Msa1298480:CDS
TAAGCTCTCTGAGTAATAGC+AGG 0.573762 8_3:+59352262 None:intergenic
GTTCCGTCATCAATGGGAGG+AGG 0.579788 8_3:+59351428 None:intergenic
TTGTGGTGAGAAGGTGGCGA+CGG 0.590124 8_3:+59352581 None:intergenic
GGCCTACCAAACCAGCCTGA+AGG 0.599102 8_3:+59351285 None:intergenic
AGGTTGTTGAGTTGTTTGGG+AGG 0.599491 8_3:+59352610 None:intergenic
GACCCAGTAGCCATTGCCAG+TGG 0.599668 8_3:-59352499 Msa1298480:CDS
TGGTAGGCCTAGACTTGCGA+AGG 0.604829 8_3:-59351271 Msa1298480:intron
TGAATGCGGTTGTGGTGAGA+AGG 0.616152 8_3:+59352572 None:intergenic
ATAATGGTTTATCTGATAGA+GGG 0.616419 8_3:-59352357 Msa1298480:CDS
AATGCATGGAATAGAGGTGA+CGG 0.617806 8_3:-59350780 Msa1298480:three_prime_UTR
TATCTGGTATAATAAGGTGA+AGG 0.618225 8_3:+59350986 None:intergenic
GTGCAGATATATGCATCAGA+TGG 0.620930 8_3:-59351470 Msa1298480:intron
ATCCTTGAAACTCAATACGC+TGG 0.621540 8_3:-59351353 Msa1298480:CDS
TGATGACCAGAAGCGTTGTG+GGG 0.624923 8_3:-59350579 Msa1298480:three_prime_UTR
TGGGTCTGAAATGGGAAGTG+TGG 0.624924 8_3:+59352516 None:intergenic
GATGACCAGAAGCGTTGTGG+GGG 0.625819 8_3:-59350578 Msa1298480:three_prime_UTR
TGTTTGGGAGGAAGACATGG+TGG 0.625868 8_3:+59352622 None:intergenic
GAGGTTGAAGTTGAAGGAGA+TGG 0.626119 8_3:+59352549 None:intergenic
AAACCTCCTCCCATTGATGA+CGG 0.626640 8_3:-59351431 Msa1298480:CDS
TACAGCTTTCTTGATGCCCG+GGG 0.627678 8_3:-59352086 Msa1298480:CDS
AGGCATGATGAAGAGTCCAC+TGG 0.631288 8_3:+59352483 None:intergenic
CCCTGTGGCGAAAACCTCTG+TGG 0.637394 8_3:-59352380 Msa1298480:CDS
GAATGTCATTGGTATCAACC+TGG 0.639678 8_3:+59351082 None:intergenic
GAAACAAATATAGTAGCAGG+AGG 0.641743 8_3:-59350742 Msa1298480:three_prime_UTR
TGTCTCAAATTTCAGGCACA+GGG 0.642949 8_3:-59351133 Msa1298480:intron
CATTTATATACAGCAGATGG+AGG 0.643462 8_3:+59351045 None:intergenic
GGAGTTCCGTCATCAATGGG+AGG 0.650140 8_3:+59351425 None:intergenic
ATGCGGTTGTGGTGAGAAGG+TGG 0.658744 8_3:+59352575 None:intergenic
GTTGAAGGAGATGGTGAATG+CGG 0.660211 8_3:+59352558 None:intergenic
AAAACCAGTACTATCTTGTG+AGG 0.679514 8_3:-59352447 Msa1298480:CDS
TGTGTGTAGTGGTAGTCCAT+CGG 0.682985 8_3:-59350528 Msa1298480:three_prime_UTR
AGATAAACCATTATCCACAG+AGG 0.721820 8_3:+59352366 None:intergenic
AGTGATAAACACCAACCCTG+TGG 0.739470 8_3:-59352395 Msa1298480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTATTATTAGAGTTT+CGG + chr8_3:59351234-59351253 None:intergenic 15.0%
!! AACAATTATTATTAGAGTTT+CGG + chr8_3:59351234-59351253 None:intergenic 15.0%
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr8_3:59350991-59351010 Msa1298480:three_prime_UTR 20.0%
!! AAAGTAAATAAAACAGTACA+TGG + chr8_3:59351136-59351155 None:intergenic 20.0%
!! ACTCTAATAATAATTGTTGT+CGG - chr8_3:59351236-59351255 Msa1298480:intron 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr8_3:59351424-59351443 Msa1298480:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr8_3:59351458-59351477 Msa1298480:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr8_3:59352130-59352149 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr8_3:59352242-59352261 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr8_3:59352345-59352364 Msa1298480:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr8_3:59352687-59352706 Msa1298480:exon 20.0%
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr8_3:59350991-59351010 Msa1298480:three_prime_UTR 20.0%
!! AAAGTAAATAAAACAGTACA+TGG + chr8_3:59351136-59351155 None:intergenic 20.0%
!! ACTCTAATAATAATTGTTGT+CGG - chr8_3:59351236-59351255 Msa1298480:intron 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr8_3:59351424-59351443 Msa1298480:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr8_3:59351458-59351477 Msa1298480:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr8_3:59352130-59352149 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr8_3:59352242-59352261 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr8_3:59352345-59352364 Msa1298480:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr8_3:59352687-59352706 Msa1298480:exon 20.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr8_3:59350436-59350455 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr8_3:59350782-59350801 Msa1298480:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr8_3:59350825-59350844 Msa1298480:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr8_3:59350826-59350845 Msa1298480:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr8_3:59350854-59350873 Msa1298480:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr8_3:59350923-59350942 Msa1298480:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr8_3:59350990-59351009 Msa1298480:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr8_3:59351028-59351047 Msa1298480:CDS 25.0%
! TAATACATGAGATTCTTGTT+AGG + chr8_3:59351266-59351285 None:intergenic 25.0%
! TACTAAGAAGGTGATTTAAT+TGG - chr8_3:59351297-59351316 Msa1298480:CDS 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr8_3:59351425-59351444 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr8_3:59351459-59351478 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr8_3:59351457-59351476 Msa1298480:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr8_3:59351599-59351618 Msa1298480:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr8_3:59351644-59351663 Msa1298480:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr8_3:59351647-59351666 Msa1298480:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr8_3:59351938-59351957 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr8_3:59352158-59352177 Msa1298480:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr8_3:59352162-59352181 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr8_3:59352272-59352291 Msa1298480:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr8_3:59352656-59352675 Msa1298480:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr8_3:59352745-59352764 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr8_3:59352768-59352787 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr8_3:59352769-59352788 Msa1298480:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr8_3:59352777-59352796 Msa1298480:five_prime_UTR 25.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr8_3:59350436-59350455 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr8_3:59350782-59350801 Msa1298480:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr8_3:59350825-59350844 Msa1298480:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr8_3:59350826-59350845 Msa1298480:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr8_3:59350854-59350873 Msa1298480:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr8_3:59350923-59350942 Msa1298480:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr8_3:59350990-59351009 Msa1298480:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr8_3:59351028-59351047 Msa1298480:CDS 25.0%
! TAATACATGAGATTCTTGTT+AGG + chr8_3:59351266-59351285 None:intergenic 25.0%
! TACTAAGAAGGTGATTTAAT+TGG - chr8_3:59351297-59351316 Msa1298480:CDS 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr8_3:59351425-59351444 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr8_3:59351459-59351478 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr8_3:59351457-59351476 Msa1298480:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr8_3:59351599-59351618 Msa1298480:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr8_3:59351644-59351663 Msa1298480:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr8_3:59351647-59351666 Msa1298480:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr8_3:59351938-59351957 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr8_3:59352158-59352177 Msa1298480:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr8_3:59352162-59352181 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr8_3:59352272-59352291 Msa1298480:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr8_3:59352656-59352675 Msa1298480:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr8_3:59352745-59352764 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr8_3:59352768-59352787 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr8_3:59352769-59352788 Msa1298480:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr8_3:59352777-59352796 Msa1298480:five_prime_UTR 25.0%
ATTCATCGTTGCTTATGATA+AGG - chr8_3:59350387-59350406 Msa1298480:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr8_3:59350690-59350709 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr8_3:59350781-59350800 Msa1298480:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr8_3:59350848-59350867 Msa1298480:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr8_3:59350935-59350954 Msa1298480:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr8_3:59350978-59350997 Msa1298480:three_prime_UTR 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr8_3:59351932-59351951 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr8_3:59351999-59352018 Msa1298480:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr8_3:59352122-59352141 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr8_3:59352156-59352175 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr8_3:59352425-59352444 Msa1298480:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr8_3:59352584-59352603 Msa1298480:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr8_3:59352716-59352735 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr8_3:59352737-59352756 Msa1298480:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr8_3:59352746-59352765 None:intergenic 30.0%
ATTCATCGTTGCTTATGATA+AGG - chr8_3:59350387-59350406 Msa1298480:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr8_3:59350690-59350709 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr8_3:59350781-59350800 Msa1298480:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr8_3:59350848-59350867 Msa1298480:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr8_3:59350935-59350954 Msa1298480:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr8_3:59350978-59350997 Msa1298480:three_prime_UTR 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr8_3:59351932-59351951 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr8_3:59351999-59352018 Msa1298480:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr8_3:59352122-59352141 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr8_3:59352156-59352175 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr8_3:59352425-59352444 Msa1298480:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr8_3:59352584-59352603 Msa1298480:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr8_3:59352716-59352735 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr8_3:59352737-59352756 Msa1298480:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr8_3:59352746-59352765 None:intergenic 30.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr8_3:59350433-59350452 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr8_3:59350494-59350513 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr8_3:59350692-59350711 Msa1298480:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr8_3:59350720-59350739 Msa1298480:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr8_3:59350721-59350740 Msa1298480:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr8_3:59350776-59350795 None:intergenic 35.0%
TACATGAGATTCTTGTTAGG+AGG + chr8_3:59351263-59351282 None:intergenic 35.0%
AAATCACCTTCTTAGTAACC+AGG + chr8_3:59351294-59351313 None:intergenic 35.0%
GAAGGTGATTTAATTGGTGT+TGG - chr8_3:59351303-59351322 Msa1298480:CDS 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr8_3:59351775-59351794 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr8_3:59351776-59351795 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr8_3:59351834-59351853 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr8_3:59352071-59352090 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr8_3:59352097-59352116 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr8_3:59352100-59352119 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr8_3:59352172-59352191 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr8_3:59352353-59352372 Msa1298480:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr8_3:59352394-59352413 Msa1298480:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr8_3:59352397-59352416 Msa1298480:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr8_3:59352501-59352520 Msa1298480:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr8_3:59352502-59352521 Msa1298480:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr8_3:59352537-59352556 None:intergenic 35.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr8_3:59350433-59350452 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr8_3:59350494-59350513 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr8_3:59350692-59350711 Msa1298480:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr8_3:59350720-59350739 Msa1298480:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr8_3:59350721-59350740 Msa1298480:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr8_3:59350776-59350795 None:intergenic 35.0%
TACATGAGATTCTTGTTAGG+AGG + chr8_3:59351263-59351282 None:intergenic 35.0%
AAATCACCTTCTTAGTAACC+AGG + chr8_3:59351294-59351313 None:intergenic 35.0%
GAAGGTGATTTAATTGGTGT+TGG - chr8_3:59351303-59351322 Msa1298480:CDS 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr8_3:59351775-59351794 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr8_3:59351776-59351795 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr8_3:59351834-59351853 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr8_3:59352071-59352090 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr8_3:59352097-59352116 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr8_3:59352100-59352119 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr8_3:59352172-59352191 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr8_3:59352353-59352372 Msa1298480:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr8_3:59352394-59352413 Msa1298480:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr8_3:59352397-59352416 Msa1298480:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr8_3:59352501-59352520 Msa1298480:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr8_3:59352502-59352521 Msa1298480:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr8_3:59352537-59352556 None:intergenic 35.0%
ATCGTTGCTTATGATAAGGC+AGG - chr8_3:59350391-59350410 Msa1298480:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr8_3:59350429-59350448 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr8_3:59350475-59350494 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr8_3:59350495-59350514 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr8_3:59350535-59350554 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr8_3:59350599-59350618 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr8_3:59350612-59350631 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr8_3:59350685-59350704 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr8_3:59350880-59350899 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr8_3:59351050-59351069 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr8_3:59351051-59351070 Msa1298480:CDS 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr8_3:59351273-59351292 Msa1298480:CDS 40.0%
GTGCAGATATATGCATCAGA+TGG - chr8_3:59351669-59351688 Msa1298480:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr8_3:59351720-59351739 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr8_3:59351721-59351740 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr8_3:59351738-59351757 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr8_3:59351786-59351805 Msa1298480:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr8_3:59351839-59351858 Msa1298480:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr8_3:59351878-59351897 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr8_3:59351901-59351920 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr8_3:59351928-59351947 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr8_3:59352006-59352025 Msa1298480:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr8_3:59352060-59352079 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr8_3:59352359-59352378 Msa1298480:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr8_3:59352373-59352392 Msa1298480:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr8_3:59352465-59352484 Msa1298480:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr8_3:59352630-59352649 None:intergenic 40.0%
ATCGTTGCTTATGATAAGGC+AGG - chr8_3:59350391-59350410 Msa1298480:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr8_3:59350429-59350448 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr8_3:59350475-59350494 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr8_3:59350495-59350514 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr8_3:59350535-59350554 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr8_3:59350599-59350618 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr8_3:59350612-59350631 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr8_3:59350685-59350704 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr8_3:59350880-59350899 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr8_3:59351050-59351069 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr8_3:59351051-59351070 Msa1298480:CDS 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr8_3:59351273-59351292 Msa1298480:CDS 40.0%
GTGCAGATATATGCATCAGA+TGG - chr8_3:59351669-59351688 Msa1298480:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr8_3:59351720-59351739 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr8_3:59351721-59351740 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr8_3:59351738-59351757 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr8_3:59351786-59351805 Msa1298480:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr8_3:59351839-59351858 Msa1298480:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr8_3:59351878-59351897 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr8_3:59351901-59351920 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr8_3:59351928-59351947 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr8_3:59352006-59352025 Msa1298480:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr8_3:59352060-59352079 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr8_3:59352359-59352378 Msa1298480:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr8_3:59352373-59352392 Msa1298480:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr8_3:59352465-59352484 Msa1298480:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr8_3:59352630-59352649 None:intergenic 40.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr8_3:59350430-59350449 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr8_3:59350523-59350542 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr8_3:59350532-59350551 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr8_3:59350536-59350555 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr8_3:59350584-59350603 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr8_3:59350593-59350612 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr8_3:59350634-59350653 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr8_3:59350635-59350654 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr8_3:59350682-59350701 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr8_3:59350699-59350718 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr8_3:59350697-59350716 Msa1298480:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr8_3:59350744-59350763 Msa1298480:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr8_3:59350766-59350785 Msa1298480:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr8_3:59351052-59351071 Msa1298480:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr8_3:59351072-59351091 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr8_3:59351073-59351092 None:intergenic 45.0%
TGTCTCATGCAGACTGTAGT+AGG - chr8_3:59351190-59351209 Msa1298480:intron 45.0%
ACTCGTCCTGGTTACTAAGA+AGG - chr8_3:59351285-59351304 Msa1298480:CDS 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr8_3:59351708-59351727 Msa1298480:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr8_3:59351791-59351810 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr8_3:59351818-59351837 Msa1298480:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr8_3:59351843-59351862 Msa1298480:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr8_3:59352005-59352024 Msa1298480:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr8_3:59352082-59352101 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr8_3:59352558-59352577 Msa1298480:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr8_3:59352559-59352578 Msa1298480:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr8_3:59352600-59352619 Msa1298480:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr8_3:59352611-59352630 Msa1298480:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr8_3:59352617-59352636 Msa1298480:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr8_3:59352618-59352637 Msa1298480:CDS 45.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr8_3:59350430-59350449 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr8_3:59350523-59350542 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr8_3:59350532-59350551 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr8_3:59350536-59350555 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr8_3:59350584-59350603 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr8_3:59350593-59350612 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr8_3:59350634-59350653 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr8_3:59350635-59350654 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr8_3:59350682-59350701 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr8_3:59350699-59350718 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr8_3:59350697-59350716 Msa1298480:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr8_3:59350744-59350763 Msa1298480:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr8_3:59350766-59350785 Msa1298480:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr8_3:59351052-59351071 Msa1298480:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr8_3:59351072-59351091 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr8_3:59351073-59351092 None:intergenic 45.0%
TGTCTCATGCAGACTGTAGT+AGG - chr8_3:59351190-59351209 Msa1298480:intron 45.0%
ACTCGTCCTGGTTACTAAGA+AGG - chr8_3:59351285-59351304 Msa1298480:CDS 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr8_3:59351708-59351727 Msa1298480:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr8_3:59351791-59351810 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr8_3:59351818-59351837 Msa1298480:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr8_3:59351843-59351862 Msa1298480:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr8_3:59352005-59352024 Msa1298480:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr8_3:59352082-59352101 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr8_3:59352558-59352577 Msa1298480:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr8_3:59352559-59352578 Msa1298480:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr8_3:59352600-59352619 Msa1298480:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr8_3:59352611-59352630 Msa1298480:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr8_3:59352617-59352636 Msa1298480:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr8_3:59352618-59352637 Msa1298480:CDS 45.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr8_3:59350362-59350381 Msa1298480:three_prime_UTR 5.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr8_3:59350362-59350381 Msa1298480:three_prime_UTR 5.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr8_3:59350424-59350443 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr8_3:59350511-59350530 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr8_3:59350520-59350539 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr8_3:59350570-59350589 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr8_3:59350626-59350645 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr8_3:59350653-59350672 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr8_3:59350659-59350678 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr8_3:59350679-59350698 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr8_3:59351053-59351072 Msa1298480:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr8_3:59351059-59351078 Msa1298480:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr8_3:59351071-59351090 Msa1298480:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr8_3:59351848-59351867 Msa1298480:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr8_3:59351852-59351871 Msa1298480:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr8_3:59351918-59351937 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr8_3:59352025-59352044 Msa1298480:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr8_3:59352560-59352579 Msa1298480:CDS 50.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr8_3:59350424-59350443 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr8_3:59350511-59350530 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr8_3:59350520-59350539 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr8_3:59350570-59350589 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr8_3:59350626-59350645 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr8_3:59350653-59350672 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr8_3:59350659-59350678 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr8_3:59350679-59350698 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr8_3:59351053-59351072 Msa1298480:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr8_3:59351059-59351078 Msa1298480:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr8_3:59351071-59351090 Msa1298480:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr8_3:59351848-59351867 Msa1298480:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr8_3:59351852-59351871 Msa1298480:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr8_3:59351918-59351937 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr8_3:59352025-59352044 Msa1298480:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr8_3:59352560-59352579 Msa1298480:CDS 50.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr8_3:59350561-59350580 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr8_3:59350567-59350586 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr8_3:59350578-59350597 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr8_3:59350645-59350664 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr8_3:59350646-59350665 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr8_3:59350758-59350777 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr8_3:59350762-59350781 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr8_3:59350763-59350782 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr8_3:59351714-59351733 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr8_3:59351717-59351736 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr8_3:59351868-59351887 Msa1298480:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr8_3:59351922-59351941 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr8_3:59352046-59352065 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr8_3:59352561-59352580 Msa1298480:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr8_3:59352569-59352588 None:intergenic 55.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr8_3:59350561-59350580 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr8_3:59350567-59350586 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr8_3:59350578-59350597 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr8_3:59350645-59350664 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr8_3:59350646-59350665 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr8_3:59350758-59350777 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr8_3:59350762-59350781 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr8_3:59350763-59350782 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr8_3:59351714-59351733 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr8_3:59351717-59351736 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr8_3:59351868-59351887 Msa1298480:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr8_3:59351922-59351941 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr8_3:59352046-59352065 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr8_3:59352561-59352580 Msa1298480:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr8_3:59352569-59352588 None:intergenic 55.0%
GACCCAGTAGCCATTGCCAG+TGG - chr8_3:59350640-59350659 Msa1298480:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr8_3:59350759-59350778 Msa1298480:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr8_3:59351857-59351876 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr8_3:59352039-59352058 Msa1298480:intron 60.0%
GACCCAGTAGCCATTGCCAG+TGG - chr8_3:59350640-59350659 Msa1298480:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr8_3:59350759-59350778 Msa1298480:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr8_3:59351857-59351876 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr8_3:59352039-59352058 Msa1298480:intron 60.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr8_3:59350555-59350574 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr8_3:59350558-59350577 None:intergenic 65.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr8_3:59350555-59350574 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr8_3:59350558-59350577 None:intergenic 65.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr8_3:59350552-59350571 None:intergenic 70.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr8_3:59350552-59350571 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 59350361 59352800 59350361 ID=Msa1298480;Name=Msa1298480
chr8_3 mRNA 59350361 59352800 59350361 ID=Msa1298480-mRNA-1;Parent=Msa1298480;Name=Msa1298480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|1|1|4|659|300
chr8_3 exon 59350361 59351140 59350361 ID=Msa1298480-mRNA-1:exon:17112;Parent=Msa1298480-mRNA-1
chr8_3 exon 59351272 59351486 59351272 ID=Msa1298480-mRNA-1:exon:17111;Parent=Msa1298480-mRNA-1
chr8_3 exon 59352043 59352124 59352043 ID=Msa1298480-mRNA-1:exon:17110;Parent=Msa1298480-mRNA-1
chr8_3 exon 59352217 59352800 59352217 ID=Msa1298480-mRNA-1:exon:17109;Parent=Msa1298480-mRNA-1
chr8_3 five_prime_UTR 59352702 59352800 59352702 ID=Msa1298480-mRNA-1:five_prime_utr;Parent=Msa1298480-mRNA-1
chr8_3 CDS 59352217 59352701 59352217 ID=Msa1298480-mRNA-1:cds;Parent=Msa1298480-mRNA-1
chr8_3 CDS 59352043 59352124 59352043 ID=Msa1298480-mRNA-1:cds;Parent=Msa1298480-mRNA-1
chr8_3 CDS 59351272 59351486 59351272 ID=Msa1298480-mRNA-1:cds;Parent=Msa1298480-mRNA-1
chr8_3 CDS 59351020 59351140 59351020 ID=Msa1298480-mRNA-1:cds;Parent=Msa1298480-mRNA-1
chr8_3 three_prime_UTR 59350361 59351019 59350361 ID=Msa1298480-mRNA-1:three_prime_utr;Parent=Msa1298480-mRNA-1
Gene Sequence

>Msa1298480

ATGCTATTAGCACCAAATAACACGTGTCAAACCCTTTCATTTTCTCAGCCAGAACAACCACCATGTCTTCCTCCCAAACAACTCAACAACCTCCTCCACCGTCGCCACCTTCTCACCACAACCGCATTCACCATCTCCTTCAACTTCAACCTCACTTCAAAAACCACACTTCCCATTTCAGACCCAGTAGCCATTGCCAGTGGACTCTTCATCATGCCTCCACCACGCCTTAAAAACCAGTACTATCTTGTGAGGTCTGGAGAATCAGAGTTTGAGAGTATGGGAGTGATAAACACCAACCCTGTGGCGAAAACCTCTGTGGATAATGGTTTATCTGATAGAGGGAAGAAACAGAGTATCAGAGCTGCTTTTGATTTGAAAGAAATGGGTGCTTGTGATAATAATTGTTGGATTTGGCCTGCTATTACTCAGAGAGCTTATCAAACTGCTGAGATTATTGCTTCTGTTAATTCTATTACTAGAAGTTATATTGTTCCGGAATACAGCTTTCTTGATGCCCGGGGATTAGGTGCTTATGAAGGAAAAACTTTAGAATATGTTTCAGAAATATATGCATCAGATGGTATATCTACAAAAATAAAACCTCCTCCCATTGATGACGGAACTCCAAATGAGAGTGTTGCAGATGTTTTTGTTCGTGTGACCCAACTCATGTCAATCCTTGAAACTCAATACGCTGGTGACACAGTCGTTATAGTCTCGCCAGATTCGGATAACTTGTCAATCCTTCAGGCTGGTTTGGTAGGCCTAGACTTGCGAAGGCACAGGGAGTTGTCTTTTGCACCTGGTGAAGTTCGCCAGGTTGATACCAATGACATTCCTACTTACAAGATGCCTCCATCTGCTGTATATAAATGCTCCAAGCTACCAAATTGTAATTAG

Protein sequence

>Msa1298480

MLLAPNNTCQTLSFSQPEQPPCLPPKQLNNLLHRRHLLTTTAFTISFNFNLTSKTTLPISDPVAIASGLFIMPPPRLKNQYYLVRSGESEFESMGVINTNPVAKTSVDNGLSDRGKKQSIRAAFDLKEMGACDNNCWIWPAITQRAYQTAEIIASVNSITRSYIVPEYSFLDARGLGAYEGKTLEYVSEIYASDGISTKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYAGDTVVIVSPDSDNLSILQAGLVGLDLRRHRELSFAPGEVRQVDTNDIPTYKMPPSAVYKCSKLPNCN*