AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0491160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0491160 MtrunA17_Chr3g0082521 95.327 428 14 1 1 428 1 422 0.0 842
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 102 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATGCTCTTGATGCTTC+TGG 0.168943 3_4:-13392939 Msa0491160:CDS
CATCAACAGGCATGTTGATT+TGG 0.238516 3_4:-13391752 Msa0491160:CDS
AAAATGAAGGAGGGCAAAAT+TGG 0.266845 3_4:+13393039 None:intergenic
ACGACAACAAAGAAGAATTT+TGG 0.267684 3_4:-13387320 Msa0491160:three_prime_UTR
TGGACACAGCATGAGACTTT+TGG 0.279761 3_4:-13387238 Msa0491160:three_prime_UTR
AGGAGGGCAAAATTGGAATT+TGG 0.288582 3_4:+13393046 None:intergenic
TGTGCTGTCTTTCCATTTGT+TGG 0.308852 3_4:+13387123 None:intergenic
TTCAAACCACTGGCCGCAAC+AGG 0.336719 3_4:-13389712 Msa0491160:CDS
CTGTAATCTCTTAGCTCATT+TGG 0.346789 3_4:+13387848 None:intergenic
TTCAGCTTATGATAGCCTTT+AGG 0.356772 3_4:+13389405 None:intergenic
GACTCCATCCTTGCTCCAAC+TGG 0.358227 3_4:+13387415 None:intergenic
ATCAACAGGCATGTTGATTT+GGG 0.359155 3_4:-13391751 Msa0491160:CDS
TTGCTGAGCTTGCAAGCTAT+TGG 0.368166 3_4:+13387194 None:intergenic
ATAATCTGAAGCATGCATTC+TGG 0.376727 3_4:-13388285 Msa0491160:CDS
AATAAACTGTAATATATATC+AGG 0.384959 3_4:+13386933 None:intergenic
TATATAAGTGACAGCATTGC+AGG 0.391828 3_4:+13389513 None:intergenic
TGTAGAGAAGAAAGAGGTTG+TGG 0.396330 3_4:+13393073 None:intergenic
GATCATTTGTAACGAGGATA+AGG 0.397028 3_4:+13387870 None:intergenic
AATATATATAATTAAAGATA+TGG 0.397988 3_4:+13387079 None:intergenic
AAGAACCAGTGCAAATCTAT+TGG 0.400814 3_4:-13389682 Msa0491160:CDS
GTTATAGTACCTTATGTTCC+CGG 0.404399 3_4:+13387768 None:intergenic
TCCGTTTCTAGAAAGTTTCT+CGG 0.407523 3_4:-13387387 Msa0491160:CDS
AAATGAAAGCTAATAGTTCA+TGG 0.420734 3_4:-13387283 Msa0491160:three_prime_UTR
ACTGTAAGAACACTGGTAAT+AGG 0.431966 3_4:+13387030 None:intergenic
TACAATACCTGACGAAGTAC+CGG 0.432480 3_4:-13387787 Msa0491160:CDS
TATGTTCCCGGTACTTCGTC+AGG 0.434486 3_4:+13387780 None:intergenic
GAACGAGAATTTCCAACAAA+TGG 0.435786 3_4:-13387135 Msa0491160:three_prime_UTR
GACATGAGGCGTTCATTGTC+TGG 0.437990 3_4:-13388009 Msa0491160:intron
ATAGACTGGATCGAGGTGTT+TGG 0.438089 3_4:-13388050 Msa0491160:CDS
TTTGTATGATCATGATGAAA+AGG 0.438635 3_4:+13388262 None:intergenic
CTGATGTCATTATGTGTGCT+TGG 0.441375 3_4:+13389367 None:intergenic
ACCGAGAAACTTTCTAGAAA+CGG 0.447782 3_4:+13387386 None:intergenic
CTCTCAAATTGCTTCGGCTA+AGG 0.457295 3_4:-13388082 Msa0491160:CDS
AAACCAGCATCTGCATCAAC+AGG 0.459556 3_4:-13391765 Msa0491160:CDS
TTGTGAACAGAATCCTTCCC+TGG 0.460736 3_4:+13391816 None:intergenic
AGCTGCAGAAGATGATTCTC+TGG 0.462249 3_4:-13391710 Msa0491160:CDS
CATATAATCCACAATGATAG+AGG 0.473660 3_4:+13387819 None:intergenic
GTTTGGACCACTGTGCGCTT+TGG 0.474107 3_4:-13388033 Msa0491160:CDS
AATGACATCAGGGAATCTAT+TGG 0.474691 3_4:-13389355 Msa0491160:CDS
GGAGAATGTAGAGAAGAAAG+AGG 0.475780 3_4:+13393067 None:intergenic
CGGCTCCAATAGATTTGCAC+TGG 0.477813 3_4:+13389677 None:intergenic
CAAGCACACATAATGACATC+AGG 0.478012 3_4:-13389366 Msa0491160:CDS
ACAAAAGCATCGACAGGAAG+TGG 0.482460 3_4:+13391670 None:intergenic
GATTAACTGTTTCAAACCAC+TGG 0.486188 3_4:-13389722 Msa0491160:CDS
TTATGAATGAGCAGGAAGCC+AGG 0.491755 3_4:-13391834 Msa0491160:intron
TTTCAGCATCAAAATACAAA+AGG 0.495452 3_4:+13389457 None:intergenic
GTAGAGAAGAAAGAGGTTGT+GGG 0.496524 3_4:+13393074 None:intergenic
TGAAACCCTGTTGCGGCCAG+TGG 0.498841 3_4:+13389706 None:intergenic
GACGAAGTACCGGGAACATA+AGG 0.499343 3_4:-13387777 Msa0491160:intron
GTTTATTTATACTAACAACT+TGG 0.499826 3_4:-13386917 Msa0491160:three_prime_UTR
CTAAACTCTGACTCTCTATC+CGG 0.504998 3_4:-13393158 Msa0491160:five_prime_UTR
CTATCATTGTGGATTATATG+AGG 0.507818 3_4:-13387816 Msa0491160:CDS
TTAATTATATATATTATACA+TGG 0.508188 3_4:-13387071 Msa0491160:three_prime_UTR
TCCCCTCGTGTGATATGTCA+TGG 0.514884 3_4:-13393008 Msa0491160:CDS
CTGTAATATATATCAGGTAA+AGG 0.517818 3_4:+13386939 None:intergenic
TCATCCAGTTGGAGCAAGGA+TGG 0.519551 3_4:-13387419 Msa0491160:CDS
CAGTGGCTCTCAAATTGCTT+CGG 0.529361 3_4:-13388088 Msa0491160:CDS
ATGCCTGTTGATGCAGATGC+TGG 0.530149 3_4:+13391762 None:intergenic
ATCAGGGAATCTATTGGTTG+AGG 0.531383 3_4:-13389349 Msa0491160:intron
ACAATACCTGACGAAGTACC+GGG 0.534201 3_4:-13387786 Msa0491160:CDS
TTCTCTGGTATCACATTCGT+CGG 0.535980 3_4:-13391695 Msa0491160:CDS
TAAGGCTGCTCAACATAGAC+TGG 0.539706 3_4:-13388064 Msa0491160:CDS
AGCATTCTCCTCTATCATTG+TGG 0.542918 3_4:-13387827 Msa0491160:CDS
TCGGGCGATGAATCATATGA+AGG 0.547656 3_4:+13391601 None:intergenic
CTTGCAACAAAAGCATCGAC+AGG 0.548840 3_4:+13391664 None:intergenic
GATGAAGAAGAAAATGAAGG+AGG 0.556896 3_4:+13393029 None:intergenic
AGAGTCAGAGTTTAGTGATG+AGG 0.557069 3_4:+13393166 None:intergenic
CGGGCGATGAATCATATGAA+GGG 0.568024 3_4:+13391602 None:intergenic
AGTTGCCGCGTGTTGAACGT+TGG 0.568265 3_4:+13392980 None:intergenic
GGGGATGAAGAAGAAAATGA+AGG 0.569920 3_4:+13393026 None:intergenic
ACGATTAAATCTCATCCAGT+TGG 0.576978 3_4:-13387430 Msa0491160:CDS
AGAATTTACATGAACATCAC+AGG 0.581338 3_4:+13386976 None:intergenic
CATTTGGATCATTTGTAACG+AGG 0.590534 3_4:+13387864 None:intergenic
TCATATGAAGGGGTGTAATG+AGG 0.591041 3_4:+13391613 None:intergenic
ATGAAGAAGAAAATGAAGGA+GGG 0.594463 3_4:+13393030 None:intergenic
AAGATTAGATGATCTTTCGA+TGG 0.597381 3_4:-13391644 Msa0491160:CDS
TATGAATGAGCAGGAAGCCA+GGG 0.605007 3_4:-13391833 Msa0491160:intron
TCGTGTTATTAGTTTATCGA+CGG 0.606277 3_4:+13387449 None:intergenic
CTATCATAAGCTGAAAAGCA+AGG 0.606589 3_4:-13389397 Msa0491160:CDS
AATCTCATCCAGTTGGAGCA+AGG 0.612442 3_4:-13387423 Msa0491160:CDS
GAGTGAAGATAGAGTGCTTG+CGG 0.619714 3_4:+13389657 None:intergenic
GGGCGATGAATCATATGAAG+GGG 0.623869 3_4:+13391603 None:intergenic
TGTCGTCGCGATTGAAACGA+AGG 0.624972 3_4:+13387337 None:intergenic
ATCAGACTCTGAAAGTGACA+TGG 0.630097 3_4:-13387484 Msa0491160:CDS
TTATTATACTGTAAGAACAC+TGG 0.638101 3_4:+13387023 None:intergenic
AATGAGCAGGAAGCCAGGGA+AGG 0.640830 3_4:-13391829 Msa0491160:intron
TCAAACCACTGGCCGCAACA+GGG 0.641709 3_4:-13389711 Msa0491160:CDS
CTGTGCGCTTTGGCGACATG+AGG 0.642640 3_4:-13388023 Msa0491160:CDS
GTTCTTCTGAAACCCTGTTG+CGG 0.644145 3_4:+13389699 None:intergenic
CATCATGCAAGAAGAACTTG+AGG 0.646582 3_4:+13392955 None:intergenic
GCAAGCACTCTATCTTCACT+CGG 0.657807 3_4:-13389655 Msa0491160:intron
CCTCCATGACATATCACACG+AGG 0.661063 3_4:+13393005 None:intergenic
AGGCTCCAACGTTCAACACG+CGG 0.663386 3_4:-13392985 Msa0491160:CDS
AAGCACACATAATGACATCA+GGG 0.674877 3_4:-13389365 Msa0491160:CDS
CTCCATGACATATCACACGA+GGG 0.687060 3_4:+13393006 None:intergenic
TCGGTAATAACTCTGAACCA+TGG 0.691303 3_4:-13387368 Msa0491160:CDS
TCCATGACATATCACACGAG+GGG 0.694967 3_4:+13393007 None:intergenic
CGTCGCGATTGAAACGAAGG+AGG 0.712616 3_4:+13387340 None:intergenic
CATGTCGCCAAAGCGCACAG+TGG 0.713769 3_4:+13388026 None:intergenic
CCTCGTGTGATATGTCATGG+AGG 0.732138 3_4:-13393005 Msa0491160:CDS
AAACGAAGGAGGAACTACCA+TGG 0.744598 3_4:+13387351 None:intergenic
GCTCAACATAGACTGGATCG+AGG 0.749948 3_4:-13388057 Msa0491160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTGGTTTTA+TGG - chr3_4:13387510-13387529 Msa0491160:CDS 10.0%
!! TATATATAATGTATTTAAGA+TGG - chr3_4:13387918-13387937 Msa0491160:intron 10.0%
!! AAAAAAGTTATAACAAAAAA+TGG + chr3_4:13388040-13388059 None:intergenic 10.0%
!!! AATCACATTTTAATTATTAT+CGG + chr3_4:13389059-13389078 None:intergenic 10.0%
!! CATTAAAATAAATAGAAAAT+AGG + chr3_4:13391902-13391921 None:intergenic 10.0%
!!! AGATTTGATTTATTGAAAAA+GGG - chr3_4:13387887-13387906 Msa0491160:intron 15.0%
!!! TATCATCTTAAATTTTATGT+TGG + chr3_4:13388667-13388686 None:intergenic 15.0%
!!! TCTGTTTTAAAAAATAGAAA+AGG + chr3_4:13391205-13391224 None:intergenic 15.0%
!! AATTGTAACTATTAATCATT+AGG - chr3_4:13391544-13391563 Msa0491160:intron 15.0%
!!! ATACAAAAACCTTATTTTTA+AGG - chr3_4:13391806-13391825 Msa0491160:CDS 15.0%
!!! TACAAAAACCTTATTTTTAA+GGG - chr3_4:13391807-13391826 Msa0491160:CDS 15.0%
!! AATAAACTGTAATATATATC+AGG + chr3_4:13393122-13393141 None:intergenic 15.0%
!! TTGGAATATATTGAAAAAAA+TGG - chr3_4:13393154-13393173 Msa0491160:five_prime_UTR 15.0%
!!! ATGGTTTTATTTGCTTAATT+TGG - chr3_4:13387211-13387230 Msa0491160:three_prime_UTR 20.0%
!! AAATGAATTCAAATCTTTGT+AGG + chr3_4:13387469-13387488 None:intergenic 20.0%
!! AAGAAAATTGAAGTGATTAA+AGG - chr3_4:13387679-13387698 Msa0491160:intron 20.0%
!!! GAGATTTGATTTATTGAAAA+AGG - chr3_4:13387886-13387905 Msa0491160:intron 20.0%
!! TTATAACAAAAAATGGAATG+AGG + chr3_4:13388033-13388052 None:intergenic 20.0%
!!! TTTTCAAATCTTGATATTGA+GGG - chr3_4:13388062-13388081 Msa0491160:CDS 20.0%
!!! ACTGAATAATCTTAATTTGT+TGG - chr3_4:13388186-13388205 Msa0491160:intron 20.0%
!!! CTGAATAATCTTAATTTGTT+GGG - chr3_4:13388187-13388206 Msa0491160:intron 20.0%
!! ATAACCTATCCAAAATATAT+TGG - chr3_4:13388689-13388708 Msa0491160:intron 20.0%
!! TAACCTATCCAAAATATATT+GGG - chr3_4:13388690-13388709 Msa0491160:intron 20.0%
!!! AAGATTATAGGTAGATATTT+TGG - chr3_4:13389228-13389247 Msa0491160:intron 20.0%
!! TTTGACCTTGTTAAAATAAT+AGG - chr3_4:13389620-13389639 Msa0491160:intron 20.0%
!! TTGACCTTGTTAAAATAATA+GGG - chr3_4:13389621-13389640 Msa0491160:intron 20.0%
!!! AAAACCCTATTATTTTAACA+AGG + chr3_4:13389628-13389647 None:intergenic 20.0%
!!! AGTTTCCTAATTAACTTTTT+GGG + chr3_4:13389986-13390005 None:intergenic 20.0%
!!! AAGTTTCCTAATTAACTTTT+TGG + chr3_4:13389987-13390006 None:intergenic 20.0%
!! TCTTCTAATTAATAAAGTCT+TGG - chr3_4:13390084-13390103 Msa0491160:intron 20.0%
!! ATCTATTTACAAATTACTTG+CGG + chr3_4:13390313-13390332 None:intergenic 20.0%
!! TCAAAAAGAAACTAAATATG+TGG + chr3_4:13390432-13390451 None:intergenic 20.0%
!! GAACATTAAAAATATCATGA+GGG + chr3_4:13390628-13390647 None:intergenic 20.0%
!!! GATATTTTTAATGTTCCTAA+AGG - chr3_4:13390632-13390651 Msa0491160:intron 20.0%
!! AGGTAAAGCTATTATAATTA+AGG + chr3_4:13391185-13391204 None:intergenic 20.0%
!! AATATCTTTAATCAATTCCA+TGG - chr3_4:13391330-13391349 Msa0491160:intron 20.0%
!! TTATATGAAAATATTCCAAG+AGG - chr3_4:13391639-13391658 Msa0491160:CDS 20.0%
!! TTATTTAATATCTGCAGATA+TGG + chr3_4:13391751-13391770 None:intergenic 20.0%
!!! ATGATATATTTTTTCCAGAT+TGG - chr3_4:13392326-13392345 Msa0491160:intron 20.0%
!! GTTTATTTATACTAACAACT+TGG - chr3_4:13393135-13393154 Msa0491160:five_prime_UTR 20.0%
!!! GATTGTTTTTGTTTGATGAA+TGG - chr3_4:13387192-13387211 Msa0491160:three_prime_UTR 25.0%
! AATTCATGTTAAATGAAGCT+TGG - chr3_4:13387246-13387265 Msa0491160:three_prime_UTR 25.0%
!! CTTTTCAAATCTTGATATTG+AGG - chr3_4:13388061-13388080 Msa0491160:CDS 25.0%
!! AAACCAAATGACAATTTTAG+AGG + chr3_4:13388148-13388167 None:intergenic 25.0%
!!! AATAATCTTAATTTGTTGGG+TGG - chr3_4:13388190-13388209 Msa0491160:intron 25.0%
!! AAGATTTTTGTATGTTCACA+AGG - chr3_4:13388495-13388514 Msa0491160:intron 25.0%
! CTGAAAATGAGTTTACAAAT+GGG - chr3_4:13388595-13388614 Msa0491160:intron 25.0%
!!! TCATACAAAATTGACTTGTA+AGG + chr3_4:13388633-13388652 None:intergenic 25.0%
!! CAATTTTGTATGATTGAGAT+TGG - chr3_4:13388640-13388659 Msa0491160:intron 25.0%
! AACCTATCCAAAATATATTG+GGG - chr3_4:13388691-13388710 Msa0491160:intron 25.0%
!!! TGAAGCATTATTTTACGATA+GGG - chr3_4:13388793-13388812 Msa0491160:intron 25.0%
!! GTAACAATTAGGTTCATTTT+AGG - chr3_4:13388864-13388883 Msa0491160:intron 25.0%
! GAAGAAAATGTAATTGTGTT+CGG - chr3_4:13388983-13389002 Msa0491160:intron 25.0%
! TACCTATAATCTTATCAACT+TGG + chr3_4:13389221-13389240 None:intergenic 25.0%
! AGAATTGATATGATTTGAAG+AGG + chr3_4:13389385-13389404 None:intergenic 25.0%
!!! AAATAATAGGGTTTTAGATG+AGG - chr3_4:13389633-13389652 Msa0491160:intron 25.0%
!! AGAAAAAATAGATTGAGTTG+TGG - chr3_4:13389663-13389682 Msa0491160:CDS 25.0%
!! AGTATAATTTTGTGTGTGAT+AGG + chr3_4:13389878-13389897 None:intergenic 25.0%
! TAGTTAGAACTAGTTCATAA+CGG - chr3_4:13389943-13389962 Msa0491160:intron 25.0%
! TAAATTTATGAGAATGCAAG+TGG - chr3_4:13390455-13390474 Msa0491160:intron 25.0%
!! TTCTAAAAATGCTTCGTTTA+TGG - chr3_4:13390570-13390589 Msa0491160:intron 25.0%
! TCTAAAAATGCTTCGTTTAT+GGG - chr3_4:13390571-13390590 Msa0491160:intron 25.0%
! TTTCAGCATCAAAATACAAA+AGG + chr3_4:13390598-13390617 None:intergenic 25.0%
! GGAACATTAAAAATATCATG+AGG + chr3_4:13390629-13390648 None:intergenic 25.0%
!!! GTGTGTATTTTTTCTAGTTT+TGG - chr3_4:13390796-13390815 Msa0491160:intron 25.0%
! TATTACAGTTACTAAAAACC+CGG + chr3_4:13391314-13391333 None:intergenic 25.0%
! TATGAACATACATTGGATAT+TGG - chr3_4:13391358-13391377 Msa0491160:intron 25.0%
! ATGAACATACATTGGATATT+GGG - chr3_4:13391359-13391378 Msa0491160:intron 25.0%
! AAATTATTGTGAGTTCTATG+TGG + chr3_4:13391461-13391480 None:intergenic 25.0%
! TCACAATAATTTACGTCATT+CGG - chr3_4:13391469-13391488 Msa0491160:intron 25.0%
! TTATCCTAATTAATAAGCCA+AGG + chr3_4:13391526-13391545 None:intergenic 25.0%
! GAATATATTATGAAACCTAG+TGG + chr3_4:13391682-13391701 None:intergenic 25.0%
! TTTGTATGATCATGATGAAA+AGG + chr3_4:13391793-13391812 None:intergenic 25.0%
! AATATCAGAAAGTTTGACAA+TGG + chr3_4:13392116-13392135 None:intergenic 25.0%
! TTCAGTTTATTTGGAAAGAA+GGG + chr3_4:13392495-13392514 None:intergenic 25.0%
! ATTCAGTTTATTTGGAAAGA+AGG + chr3_4:13392496-13392515 None:intergenic 25.0%
! AAATGAAAGCTAATAGTTCA+TGG - chr3_4:13392769-13392788 Msa0491160:intron 25.0%
! TTATTATACTGTAAGAACAC+TGG + chr3_4:13393032-13393051 None:intergenic 25.0%
! CTGTAATATATATCAGGTAA+AGG + chr3_4:13393116-13393135 None:intergenic 25.0%
!!! ACAGTTGTTTTGTTTATAGC+CGG + chr3_4:13386916-13386935 None:intergenic 30.0%
ATGAAGAAGAAAATGAAGGA+GGG + chr3_4:13387025-13387044 None:intergenic 30.0%
! CAAGAGATGAATTTTTACTC+TGG + chr3_4:13387156-13387175 None:intergenic 30.0%
TAGAATTTGTCATCCTGTAA+TGG - chr3_4:13387276-13387295 Msa0491160:three_prime_UTR 30.0%
AAACAAAAATCCACCATTAC+AGG + chr3_4:13387292-13387311 None:intergenic 30.0%
! TTTGAAACATCTCAAAACAC+AGG - chr3_4:13387317-13387336 Msa0491160:three_prime_UTR 30.0%
TTGAAACATCTCAAAACACA+GGG - chr3_4:13387318-13387337 Msa0491160:three_prime_UTR 30.0%
AAGTGATTAAAGGTAGCTAT+AGG - chr3_4:13387689-13387708 Msa0491160:intron 30.0%
CATAATATATGTCAGGTCTA+GGG + chr3_4:13387790-13387809 None:intergenic 30.0%
ACTTGAGATTAAGGTGTATT+TGG + chr3_4:13387854-13387873 None:intergenic 30.0%
TGATAGTATGTTACCTTGTT+TGG - chr3_4:13387941-13387960 Msa0491160:intron 30.0%
! AAGAATTTTTCGTCCAAACA+AGG + chr3_4:13387957-13387976 None:intergenic 30.0%
!!! TTCTTTTGTCGTAATTTGCT+TGG - chr3_4:13387972-13387991 Msa0491160:intron 30.0%
!! ATTTGCTTGGTTTTCTTTAG+TGG - chr3_4:13387985-13388004 Msa0491160:intron 30.0%
!! TTTGCTTGGTTTTCTTTAGT+GGG - chr3_4:13387986-13388005 Msa0491160:intron 30.0%
TTGATATTGAGGGAAATTGT+GGG - chr3_4:13388072-13388091 Msa0491160:CDS 30.0%
!! AAGCCTCTAAAATTGTCATT+TGG - chr3_4:13388142-13388161 Msa0491160:intron 30.0%
AAGATTAGATGATCTTTCGA+TGG - chr3_4:13388408-13388427 Msa0491160:intron 30.0%
! TATGCTCTCTAAAAACTTCT+CGG + chr3_4:13388473-13388492 None:intergenic 30.0%
AATAAAACAAGCATACAGCT+AGG + chr3_4:13388542-13388561 None:intergenic 30.0%
! CCATTTGTAAACTCATTTTC+AGG + chr3_4:13388597-13388616 None:intergenic 30.0%
CCTGAAAATGAGTTTACAAA+TGG - chr3_4:13388594-13388613 Msa0491160:intron 30.0%
!! CTGAAGCATTATTTTACGAT+AGG - chr3_4:13388792-13388811 Msa0491160:intron 30.0%
GAAACAATTAGAGGAACATA+TGG + chr3_4:13388830-13388849 None:intergenic 30.0%
AGGCTCAAATAGTAACAATT+AGG - chr3_4:13388853-13388872 Msa0491160:intron 30.0%
GCATTGAAGATCACAATATA+AGG + chr3_4:13389199-13389218 None:intergenic 30.0%
!! TGCCAAGTTGATAAGATTAT+AGG - chr3_4:13389216-13389235 Msa0491160:intron 30.0%
TATGAGAGTTCTGTAAATAG+AGG + chr3_4:13389281-13389300 None:intergenic 30.0%
AACTCTCATAATGCCAAAAA+GGG - chr3_4:13389291-13389310 Msa0491160:intron 30.0%
! TCATTTTCCTTTTCCCTTTT+TGG + chr3_4:13389307-13389326 None:intergenic 30.0%
AAAAGGGAAAAGGAAAATGA+AGG - chr3_4:13389307-13389326 Msa0491160:intron 30.0%
AATACCATTCTTATCACTTC+AGG - chr3_4:13389531-13389550 Msa0491160:CDS 30.0%
TATGAGGTTTAACAATATGG+AGG + chr3_4:13389761-13389780 None:intergenic 30.0%
CTCTATGAGGTTTAACAATA+TGG + chr3_4:13389764-13389783 None:intergenic 30.0%
AACTTGACATGAAGAACATT+AGG + chr3_4:13389793-13389812 None:intergenic 30.0%
TAATGTATGTTGCATGTTCT+AGG - chr3_4:13389844-13389863 Msa0491160:intron 30.0%
!! GAACTAGTTCTAACTAAGTA+GGG + chr3_4:13389939-13389958 None:intergenic 30.0%
!! TGAACTAGTTCTAACTAAGT+AGG + chr3_4:13389940-13389959 None:intergenic 30.0%
GTTAGCCCAAAAAGTTAATT+AGG - chr3_4:13389978-13389997 Msa0491160:intron 30.0%
TTTACTTTAATGAATCGTGC+AGG - chr3_4:13390493-13390512 Msa0491160:intron 30.0%
CTAAAAATGCTTCGTTTATG+GGG - chr3_4:13390572-13390591 Msa0491160:intron 30.0%
!! ATTTAAGTTGAGAAGATACC+AGG + chr3_4:13390766-13390785 None:intergenic 30.0%
!! ATTGGGAGCATTTATACTTA+TGG + chr3_4:13390841-13390860 None:intergenic 30.0%
ATAACTCGATTCTACAAAAC+CGG - chr3_4:13390901-13390920 Msa0491160:intron 30.0%
! ATTCTACAAAACCGGTTTAT+AGG - chr3_4:13390909-13390928 Msa0491160:intron 30.0%
! AAAACCGGTTTATAGGATAA+GGG - chr3_4:13390916-13390935 Msa0491160:intron 30.0%
!!! TGGTTTTGTAGAGTTGAATT+AGG + chr3_4:13391048-13391067 None:intergenic 30.0%
ATCCCACATTGTATGAAATA+CGG + chr3_4:13391117-13391136 None:intergenic 30.0%
! TTTTTCCATACACACTTAAG+AGG + chr3_4:13391236-13391255 None:intergenic 30.0%
TTCACATTTCCACATAAGTT+AGG + chr3_4:13391272-13391291 None:intergenic 30.0%
GAAAAAAAAATTCCAGTGTC+CGG - chr3_4:13391292-13391311 Msa0491160:intron 30.0%
AAAAAAAAATTCCAGTGTCC+GGG - chr3_4:13391293-13391312 Msa0491160:intron 30.0%
! TTGTTTTCAACTAAGATCCT+AGG + chr3_4:13391435-13391454 None:intergenic 30.0%
TGATAACATTGTTATCCTCT+TGG + chr3_4:13391657-13391676 None:intergenic 30.0%
AACAATGTTATCAAACCACT+AGG - chr3_4:13391664-13391683 Msa0491160:CDS 30.0%
CATATAATCCACAATGATAG+AGG + chr3_4:13392236-13392255 None:intergenic 30.0%
! CTATCATTGTGGATTATATG+AGG - chr3_4:13392236-13392255 Msa0491160:intron 30.0%
TAAACAATCTTGGTTGTTGA+TGG + chr3_4:13392389-13392408 None:intergenic 30.0%
TCGGATGAATCAAATTACAT+AGG + chr3_4:13392420-13392439 None:intergenic 30.0%
CACATCACATTCAGTTTATT+TGG + chr3_4:13392504-13392523 None:intergenic 30.0%
! TCGTGTTATTAGTTTATCGA+CGG + chr3_4:13392606-13392625 None:intergenic 30.0%
! ACGACAACAAAGAAGAATTT+TGG - chr3_4:13392732-13392751 Msa0491160:intron 30.0%
AGAATTTACATGAACATCAC+AGG + chr3_4:13393079-13393098 None:intergenic 30.0%
AAAATGAAGGAGGGCAAAAT+TGG + chr3_4:13387016-13387035 None:intergenic 35.0%
GATGAAGAAGAAAATGAAGG+AGG + chr3_4:13387026-13387045 None:intergenic 35.0%
AATTTGTCATCCTGTAATGG+TGG - chr3_4:13387279-13387298 Msa0491160:three_prime_UTR 35.0%
ACACCTTTGATCATAAGTGT+CGG - chr3_4:13387442-13387461 Msa0491160:CDS 35.0%
! GAGTTTGAGCTTGAGTTTTA+AGG - chr3_4:13387543-13387562 Msa0491160:intron 35.0%
!!! CACCAGATACACCTTTTTTT+TGG - chr3_4:13387746-13387765 Msa0491160:intron 35.0%
! CACCAAAAAAAAGGTGTATC+TGG + chr3_4:13387751-13387770 None:intergenic 35.0%
!!! CAGATACACCTTTTTTTTGG+TGG - chr3_4:13387749-13387768 Msa0491160:intron 35.0%
!!! ATACACCTTTTTTTTGGTGG+TGG - chr3_4:13387752-13387771 Msa0491160:intron 35.0%
GCATAATATATGTCAGGTCT+AGG + chr3_4:13387791-13387810 None:intergenic 35.0%
GACGATGCATAATATATGTC+AGG + chr3_4:13387797-13387816 None:intergenic 35.0%
! TGAACTTAGTTCAGTTGGTA+GGG + chr3_4:13387819-13387838 None:intergenic 35.0%
ATGAACTTAGTTCAGTTGGT+AGG + chr3_4:13387820-13387839 None:intergenic 35.0%
CCTTATGAACTTAGTTCAGT+TGG + chr3_4:13387824-13387843 None:intergenic 35.0%
CCAACTGAACTAAGTTCATA+AGG - chr3_4:13387821-13387840 Msa0491160:CDS 35.0%
CTTGATATTGAGGGAAATTG+TGG - chr3_4:13388071-13388090 Msa0491160:CDS 35.0%
AGGGAAATTGTGGGTAATTA+AGG - chr3_4:13388081-13388100 Msa0491160:CDS 35.0%
!!! GTCATTTGGTTTTGAACTTC+AGG - chr3_4:13388156-13388175 Msa0491160:intron 35.0%
! TGGTTGATTTATGAATGAGC+AGG - chr3_4:13388210-13388229 Msa0491160:CDS 35.0%
!! ATCAACAGGCATGTTGATTT+GGG - chr3_4:13388301-13388320 Msa0491160:intron 35.0%
! ATGCTCTCTAAAAACTTCTC+GGG + chr3_4:13388472-13388491 None:intergenic 35.0%
! CAGAGTTCAAAATCCTTTTG+TGG + chr3_4:13388775-13388794 None:intergenic 35.0%
! GTTCCTCTAATTGTTTCTTG+AGG - chr3_4:13388833-13388852 Msa0491160:intron 35.0%
! TTCTGATTGAAGGTGTGTTT+GGG + chr3_4:13389128-13389147 None:intergenic 35.0%
ACACCTTCAATCAGAAGTTT+CGG - chr3_4:13389132-13389151 Msa0491160:intron 35.0%
GATCACAATATAAGGAGACT+AGG + chr3_4:13389191-13389210 None:intergenic 35.0%
GAACTCTCATAATGCCAAAA+AGG - chr3_4:13389290-13389309 Msa0491160:intron 35.0%
CATAATGCCAAAAAGGGAAA+AGG - chr3_4:13389297-13389316 Msa0491160:intron 35.0%
GAAACAAGTGAGTGAGAAAT+AGG + chr3_4:13389413-13389432 None:intergenic 35.0%
CTTCCTCCTAACATAAACTT+TGG - chr3_4:13389432-13389451 Msa0491160:CDS 35.0%
TTGCCAAAGTTTATGTTAGG+AGG + chr3_4:13389438-13389457 None:intergenic 35.0%
TGCTTGCCAAAGTTTATGTT+AGG + chr3_4:13389441-13389460 None:intergenic 35.0%
!!! TAATAGGGTTTTAGATGAGG+AGG - chr3_4:13389636-13389655 Msa0491160:intron 35.0%
!!! AATAGGGTTTTAGATGAGGA+GGG - chr3_4:13389637-13389656 Msa0491160:intron 35.0%
! GAAAAGGTTCTTTTCGAAGA+TGG - chr3_4:13389717-13389736 Msa0491160:CDS 35.0%
AGGTTTAACAATATGGAGGT+GGG + chr3_4:13389757-13389776 None:intergenic 35.0%
CATTAGGTATAGACTCTATG+AGG + chr3_4:13389777-13389796 None:intergenic 35.0%
GTTCTTCATGTCAAGTTTGA+AGG - chr3_4:13389796-13389815 Msa0491160:intron 35.0%
! TCTCCACTTCTTTTGACAAA+TGG - chr3_4:13389906-13389925 Msa0491160:intron 35.0%
! AAGTAATGCAGAGCAGATTT+TGG - chr3_4:13390015-13390034 Msa0491160:intron 35.0%
CAAAGCATAATCAATGCACT+AGG + chr3_4:13390050-13390069 None:intergenic 35.0%
!! TTAATAAAGTCTTGGTGACG+TGG - chr3_4:13390092-13390111 Msa0491160:intron 35.0%
! ATGATACGAGTAGTAGCTTT+TGG - chr3_4:13390144-13390163 Msa0491160:intron 35.0%
GATTAACTGTTTCAAACCAC+TGG - chr3_4:13390330-13390349 Msa0491160:intron 35.0%
AAGAACCAGTGCAAATCTAT+TGG - chr3_4:13390370-13390389 Msa0491160:intron 35.0%
TATATAAGTGACAGCATTGC+AGG + chr3_4:13390542-13390561 None:intergenic 35.0%
TTCAGCTTATGATAGCCTTT+AGG + chr3_4:13390650-13390669 None:intergenic 35.0%
CTATCATAAGCTGAAAAGCA+AGG - chr3_4:13390655-13390674 Msa0491160:intron 35.0%
AAGCACACATAATGACATCA+GGG - chr3_4:13390687-13390706 Msa0491160:intron 35.0%
AATGACATCAGGGAATCTAT+TGG - chr3_4:13390697-13390716 Msa0491160:intron 35.0%
! CAAAACCGGTTTATAGGATA+AGG - chr3_4:13390915-13390934 Msa0491160:intron 35.0%
CTCTACAAAACCAACTAGTA+AGG - chr3_4:13391055-13391074 Msa0491160:intron 35.0%
AAAACCAACTAGTAAGGTGA+GGG - chr3_4:13391061-13391080 Msa0491160:intron 35.0%
ATTGTATGAAATACGGTCTG+AGG + chr3_4:13391110-13391129 None:intergenic 35.0%
AGACCGTATTTCATACAATG+TGG - chr3_4:13391111-13391130 Msa0491160:intron 35.0%
GACCGTATTTCATACAATGT+GGG - chr3_4:13391112-13391131 Msa0491160:intron 35.0%
AAATAGAACCCATGATCACT+AGG + chr3_4:13391152-13391171 None:intergenic 35.0%
ATCTTCCTCTTAAGTGTGTA+TGG - chr3_4:13391228-13391247 Msa0491160:intron 35.0%
TGTATGTTCATAAGTTGCCA+TGG + chr3_4:13391350-13391369 None:intergenic 35.0%
GGCAACTTATGAACATACAT+TGG - chr3_4:13391351-13391370 Msa0491160:intron 35.0%
TCTGCTTCTTCTGTTTGAAT+AGG - chr3_4:13391383-13391402 Msa0491160:intron 35.0%
TGCACCTTGGCTTATTAATT+AGG - chr3_4:13391519-13391538 Msa0491160:intron 35.0%
CAATTTACTTACAAGCTGTG+AGG + chr3_4:13391616-13391635 None:intergenic 35.0%
! ATAATCTGAAGCATGCATTC+TGG - chr3_4:13391767-13391786 Msa0491160:CDS 35.0%
ATGTGCTGCCCTTAAAAATA+AGG + chr3_4:13391818-13391837 None:intergenic 35.0%
! GTTGACAGATCTGATTTTGT+TGG - chr3_4:13391850-13391869 Msa0491160:intron 35.0%
! GATCTGATTTTGTTGGAGAA+AGG - chr3_4:13391857-13391876 Msa0491160:intron 35.0%
CTTGCCTTAAAGTTTGTCAA+CGG - chr3_4:13391941-13391960 Msa0491160:intron 35.0%
GATCATTTGTAACGAGGATA+AGG + chr3_4:13392185-13392204 None:intergenic 35.0%
CATTTGGATCATTTGTAACG+AGG + chr3_4:13392191-13392210 None:intergenic 35.0%
CTGTAATCTCTTAGCTCATT+TGG + chr3_4:13392207-13392226 None:intergenic 35.0%
GTTATAGTACCTTATGTTCC+CGG + chr3_4:13392287-13392306 None:intergenic 35.0%
! GGATTCGCTTTAAACAATCT+TGG + chr3_4:13392399-13392418 None:intergenic 35.0%
ACGATTAAATCTCATCCAGT+TGG - chr3_4:13392622-13392641 Msa0491160:intron 35.0%
! TCCGTTTCTAGAAAGTTTCT+CGG - chr3_4:13392665-13392684 Msa0491160:intron 35.0%
! ACCGAGAAACTTTCTAGAAA+CGG + chr3_4:13392669-13392688 None:intergenic 35.0%
GAACGAGAATTTCCAACAAA+TGG - chr3_4:13392917-13392936 Msa0491160:CDS 35.0%
ACTGTAAGAACACTGGTAAT+AGG + chr3_4:13393025-13393044 None:intergenic 35.0%
AGAGTCAGAGTTTAGTGATG+AGG + chr3_4:13386889-13386908 None:intergenic 40.0%
CTAAACTCTGACTCTCTATC+CGG - chr3_4:13386894-13386913 Msa0491160:three_prime_UTR 40.0%
GTAGAGAAGAAAGAGGTTGT+GGG + chr3_4:13386981-13387000 None:intergenic 40.0%
TGTAGAGAAGAAAGAGGTTG+TGG + chr3_4:13386982-13387001 None:intergenic 40.0%
GGAGAATGTAGAGAAGAAAG+AGG + chr3_4:13386988-13387007 None:intergenic 40.0%
AGGAGGGCAAAATTGGAATT+TGG + chr3_4:13387009-13387028 None:intergenic 40.0%
GGGGATGAAGAAGAAAATGA+AGG + chr3_4:13387029-13387048 None:intergenic 40.0%
CATCATGCAAGAAGAACTTG+AGG + chr3_4:13387100-13387119 None:intergenic 40.0%
TGAATGTTATGCGTCAGAGT+TGG - chr3_4:13387395-13387414 Msa0491160:CDS 40.0%
TGTCTCAGTGTTTCATAGGA+CGG + chr3_4:13387634-13387653 None:intergenic 40.0%
TGTCTGTCTCAGTGTTTCAT+AGG + chr3_4:13387638-13387657 None:intergenic 40.0%
!! AGCACTGACACTTGAGATTA+AGG + chr3_4:13387863-13387882 None:intergenic 40.0%
TTGTGGGTAATTAAGGCCAA+TGG - chr3_4:13388088-13388107 Msa0491160:CDS 40.0%
AAACGCAATTACGGATCCAT+TGG + chr3_4:13388107-13388126 None:intergenic 40.0%
TGGATCCGTAATTGCGTTTA+CGG - chr3_4:13388108-13388127 Msa0491160:intron 40.0%
TGACACCGTAAACGCAATTA+CGG + chr3_4:13388116-13388135 None:intergenic 40.0%
! CATCAACAGGCATGTTGATT+TGG - chr3_4:13388300-13388319 Msa0491160:intron 40.0%
TTCTCTGGTATCACATTCGT+CGG - chr3_4:13388357-13388376 Msa0491160:intron 40.0%
! TCATATGAAGGGGTGTAATG+AGG + chr3_4:13388442-13388461 None:intergenic 40.0%
!! GGCCCCAATATATTTTGGAT+AGG + chr3_4:13388696-13388715 None:intergenic 40.0%
TCCTGCGTATTAACCACAAA+AGG - chr3_4:13388759-13388778 Msa0491160:intron 40.0%
! TCCTTTTGTGGTTAATACGC+AGG + chr3_4:13388763-13388782 None:intergenic 40.0%
GAGCCTCAAGAAACAATTAG+AGG + chr3_4:13388839-13388858 None:intergenic 40.0%
! TCTGATTGAAGGTGTGTTTG+GGG + chr3_4:13389127-13389146 None:intergenic 40.0%
! CTTCTGATTGAAGGTGTGTT+TGG + chr3_4:13389129-13389148 None:intergenic 40.0%
!! TTCGGTGCTACATAGTTTCT+CGG - chr3_4:13389150-13389169 Msa0491160:intron 40.0%
! ATTTGAAGAGGTATGAGACC+AGG + chr3_4:13389373-13389392 None:intergenic 40.0%
TGCTCCTGAAGTGATAAGAA+TGG + chr3_4:13389538-13389557 None:intergenic 40.0%
TTCTTATCACTTCAGGAGCA+AGG - chr3_4:13389538-13389557 Msa0491160:CDS 40.0%
TCTTATCACTTCAGGAGCAA+GGG - chr3_4:13389539-13389558 Msa0491160:CDS 40.0%
CTTTCTCAACCTTGAGGAAA+AGG - chr3_4:13389701-13389720 Msa0491160:CDS 40.0%
! CGAAAAGAACCTTTTCCTCA+AGG + chr3_4:13389713-13389732 None:intergenic 40.0%
GAGGTTTAACAATATGGAGG+TGG + chr3_4:13389758-13389777 None:intergenic 40.0%
GCTCCATTTGTCAAAAGAAG+TGG + chr3_4:13389912-13389931 None:intergenic 40.0%
! TACGAGTAGTAGCTTTTGGA+TGG - chr3_4:13390148-13390167 Msa0491160:intron 40.0%
AACACTAGTTCCAGTTTCCA+TGG + chr3_4:13390187-13390206 None:intergenic 40.0%
CTGATGTCATTATGTGTGCT+TGG + chr3_4:13390688-13390707 None:intergenic 40.0%
CAAGCACACATAATGACATC+AGG - chr3_4:13390686-13390705 Msa0491160:intron 40.0%
! ATCAGGGAATCTATTGGTTG+AGG - chr3_4:13390703-13390722 Msa0491160:intron 40.0%
CTTCTTTCATTTCCACTACC+TGG - chr3_4:13390745-13390764 Msa0491160:intron 40.0%
GACTCCCTTATCCTATAAAC+CGG + chr3_4:13390923-13390942 None:intergenic 40.0%
! AGAATTTTACTCGATGACCC+AGG - chr3_4:13390995-13391014 Msa0491160:intron 40.0%
GCTCAACACATCGTTTAAGA+TGG + chr3_4:13391026-13391045 None:intergenic 40.0%
CAAAACCAACTAGTAAGGTG+AGG - chr3_4:13391060-13391079 Msa0491160:intron 40.0%
TAACAGTGACCTAGTGATCA+TGG - chr3_4:13391140-13391159 Msa0491160:intron 40.0%
AACAGTGACCTAGTGATCAT+GGG - chr3_4:13391141-13391160 Msa0491160:intron 40.0%
CTTCAAGCTCCTAACTTATG+TGG - chr3_4:13391260-13391279 Msa0491160:intron 40.0%
GACTTGACATGAGTGCTAAA+GGG + chr3_4:13391729-13391748 None:intergenic 40.0%
ACTGCCGTTGACAAACTTTA+AGG + chr3_4:13391948-13391967 None:intergenic 40.0%
TTAAAGTTTGTCAACGGCAG+TGG - chr3_4:13391947-13391966 Msa0491160:intron 40.0%
AGCATTCTCCTCTATCATTG+TGG - chr3_4:13392225-13392244 Msa0491160:intron 40.0%
TACAATACCTGACGAAGTAC+CGG - chr3_4:13392265-13392284 Msa0491160:intron 40.0%
TTACTGCACATGATCCAATC+TGG + chr3_4:13392343-13392362 None:intergenic 40.0%
AATACTACTGCAGGAAATCC+TGG - chr3_4:13392468-13392487 Msa0491160:intron 40.0%
TTATTTGGAAAGAAGGGACC+AGG + chr3_4:13392489-13392508 None:intergenic 40.0%
! ATCAGACTCTGAAAGTGACA+TGG - chr3_4:13392568-13392587 Msa0491160:intron 40.0%
TCGGTAATAACTCTGAACCA+TGG - chr3_4:13392684-13392703 Msa0491160:intron 40.0%
!! GCAAGTTTTGCTGTGTTTTC+TGG - chr3_4:13392794-13392813 Msa0491160:intron 40.0%
TGTGCTGTCTTTCCATTTGT+TGG + chr3_4:13392932-13392951 None:intergenic 40.0%
TCCATGACATATCACACGAG+GGG + chr3_4:13387048-13387067 None:intergenic 45.0%
CTCCATGACATATCACACGA+GGG + chr3_4:13387049-13387068 None:intergenic 45.0%
CATGATGCTCTTGATGCTTC+TGG - chr3_4:13387113-13387132 Msa0491160:three_prime_UTR 45.0%
GGACCGACACTTATGATCAA+AGG + chr3_4:13387448-13387467 None:intergenic 45.0%
!!! ACCTTTTTTTTGGTGGTGGC+CGG - chr3_4:13387756-13387775 Msa0491160:intron 45.0%
TTATGAATGAGCAGGAAGCC+AGG - chr3_4:13388218-13388237 Msa0491160:CDS 45.0%
TATGAATGAGCAGGAAGCCA+GGG - chr3_4:13388219-13388238 Msa0491160:CDS 45.0%
TTGTGAACAGAATCCTTCCC+TGG + chr3_4:13388239-13388258 None:intergenic 45.0%
AAACCAGCATCTGCATCAAC+AGG - chr3_4:13388287-13388306 Msa0491160:CDS 45.0%
AGCTGCAGAAGATGATTCTC+TGG - chr3_4:13388342-13388361 Msa0491160:intron 45.0%
!! ACAAAAGCATCGACAGGAAG+TGG + chr3_4:13388385-13388404 None:intergenic 45.0%
!! CTTGCAACAAAAGCATCGAC+AGG + chr3_4:13388391-13388410 None:intergenic 45.0%
GGGCGATGAATCATATGAAG+GGG + chr3_4:13388452-13388471 None:intergenic 45.0%
CGGGCGATGAATCATATGAA+GGG + chr3_4:13388453-13388472 None:intergenic 45.0%
TCGGGCGATGAATCATATGA+AGG + chr3_4:13388454-13388473 None:intergenic 45.0%
! CAGGTGGCCCCAATATATTT+TGG + chr3_4:13388701-13388720 None:intergenic 45.0%
GCACCGAAACTTCTGATTGA+AGG + chr3_4:13389138-13389157 None:intergenic 45.0%
CTTATCACTTCAGGAGCAAG+GGG - chr3_4:13389540-13389559 Msa0491160:CDS 45.0%
CCTCAAGGTTGAGAAAGTCT+GGG + chr3_4:13389698-13389717 None:intergenic 45.0%
TCCTCAAGGTTGAGAAAGTC+TGG + chr3_4:13389699-13389718 None:intergenic 45.0%
TTCATAACGGCAGCCAACTA+GGG - chr3_4:13389956-13389975 Msa0491160:intron 45.0%
!! CTTTTTGGGCTAACCCTAGT+TGG + chr3_4:13389972-13389991 None:intergenic 45.0%
CGTATCATCACACTCAACAC+AGG + chr3_4:13390132-13390151 None:intergenic 45.0%
ATGGATGTGAGTTGTCACCA+TGG - chr3_4:13390167-13390186 Msa0491160:intron 45.0%
TGAGTTGTCACCATGGAAAC+TGG - chr3_4:13390174-13390193 Msa0491160:intron 45.0%
!! GTTCTTCTGAAACCCTGTTG+CGG + chr3_4:13390356-13390375 None:intergenic 45.0%
! GAGTGAAGATAGAGTGCTTG+CGG + chr3_4:13390398-13390417 None:intergenic 45.0%
GCAAGCACTCTATCTTCACT+CGG - chr3_4:13390397-13390416 Msa0491160:intron 45.0%
!!! GCAGGTTTTGACTCATCGTT+CGG - chr3_4:13390511-13390530 Msa0491160:intron 45.0%
!!! CAGGTTTTGACTCATCGTTC+GGG - chr3_4:13390512-13390531 Msa0491160:intron 45.0%
GTTGAGAAGATACCAGGTAG+TGG + chr3_4:13390760-13390779 None:intergenic 45.0%
TCCCAATCAAGCATTCTCGT+TGG - chr3_4:13390854-13390873 Msa0491160:intron 45.0%
CCCAACGAGAATGCTTGATT+GGG + chr3_4:13390858-13390877 None:intergenic 45.0%
CCCAATCAAGCATTCTCGTT+GGG - chr3_4:13390855-13390874 Msa0491160:intron 45.0%
ACCCAACGAGAATGCTTGAT+TGG + chr3_4:13390859-13390878 None:intergenic 45.0%
TAAGCACATCCTTCACACTC+AGG - chr3_4:13390961-13390980 Msa0491160:intron 45.0%
ACATCCCTCACCTTACTAGT+TGG + chr3_4:13391068-13391087 None:intergenic 45.0%
TGAAATACGGTCTGAGGATG+TGG + chr3_4:13391104-13391123 None:intergenic 45.0%
GTTACTAAAAACCCGGACAC+TGG + chr3_4:13391307-13391326 None:intergenic 45.0%
ACTAAGATCCTAGGTGTGTG+TGG + chr3_4:13391426-13391445 None:intergenic 45.0%
GGACTTGACATGAGTGCTAA+AGG + chr3_4:13391730-13391749 None:intergenic 45.0%
CAGTGGCTCTCAAATTGCTT+CGG - chr3_4:13391964-13391983 Msa0491160:intron 45.0%
CTCTCAAATTGCTTCGGCTA+AGG - chr3_4:13391970-13391989 Msa0491160:intron 45.0%
TAAGGCTGCTCAACATAGAC+TGG - chr3_4:13391988-13392007 Msa0491160:intron 45.0%
! ATAGACTGGATCGAGGTGTT+TGG - chr3_4:13392002-13392021 Msa0491160:intron 45.0%
CGTTCACATGCTGAAAGAAC+AGG + chr3_4:13392162-13392181 None:intergenic 45.0%
! ACAATACCTGACGAAGTACC+GGG - chr3_4:13392266-13392285 Msa0491160:intron 45.0%
TATCACGCAGTAAGCGATCT+CGG + chr3_4:13392439-13392458 None:intergenic 45.0%
TTCCTGCAGTAGTATTTCCC+CGG + chr3_4:13392464-13392483 None:intergenic 45.0%
AATCTCATCCAGTTGGAGCA+AGG - chr3_4:13392629-13392648 Msa0491160:intron 45.0%
AAACGAAGGAGGAACTACCA+TGG + chr3_4:13392704-13392723 None:intergenic 45.0%
! TGGACACAGCATGAGACTTT+TGG - chr3_4:13392814-13392833 Msa0491160:intron 45.0%
! GGACACAGCATGAGACTTTT+GGG - chr3_4:13392815-13392834 Msa0491160:intron 45.0%
TTGCTGAGCTTGCAAGCTAT+TGG + chr3_4:13392861-13392880 None:intergenic 45.0%
!!! TTTGTATTTTTTTTTTTTTT+TGG - chr3_4:13387502-13387521 Msa0491160:CDS 5.0%
!! AATATATATAATTAAAGATA+TGG + chr3_4:13392976-13392995 None:intergenic 5.0%
!! TTAATTATATATATTATACA+TGG - chr3_4:13392981-13393000 Msa0491160:CDS 5.0%
TCCCCTCGTGTGATATGTCA+TGG - chr3_4:13387044-13387063 Msa0491160:three_prime_UTR 50.0%
CCTCCATGACATATCACACG+AGG + chr3_4:13387050-13387069 None:intergenic 50.0%
CCTCGTGTGATATGTCATGG+AGG - chr3_4:13387047-13387066 Msa0491160:three_prime_UTR 50.0%
!!! CCTTTTTTTTGGTGGTGGCC+GGG - chr3_4:13387757-13387776 Msa0491160:intron 50.0%
!!! CTTTTTTTTGGTGGTGGCCG+GGG - chr3_4:13387758-13387777 Msa0491160:intron 50.0%
ATGCCTGTTGATGCAGATGC+TGG + chr3_4:13388293-13388312 None:intergenic 50.0%
TATTGGGGCCACCTGTTATC+AGG - chr3_4:13388706-13388725 Msa0491160:intron 50.0%
AGAGGAAGCCTGATAACAGG+TGG + chr3_4:13388717-13388736 None:intergenic 50.0%
GCTAGAGGAAGCCTGATAAC+AGG + chr3_4:13388720-13388739 None:intergenic 50.0%
! GAGATTTAGAGCGTGGCTAG+AGG + chr3_4:13388735-13388754 None:intergenic 50.0%
! GGACTGTGAGATTTAGAGCG+TGG + chr3_4:13388742-13388761 None:intergenic 50.0%
GGTCTGACACACATCAACGT+CGG + chr3_4:13389106-13389125 None:intergenic 50.0%
! AAGAGGTATGAGACCAGGTG+GGG + chr3_4:13389368-13389387 None:intergenic 50.0%
! GAAGAGGTATGAGACCAGGT+GGG + chr3_4:13389369-13389388 None:intergenic 50.0%
! TGAAGAGGTATGAGACCAGG+TGG + chr3_4:13389370-13389389 None:intergenic 50.0%
CCCAGACTTTCTCAACCTTG+AGG - chr3_4:13389695-13389714 Msa0491160:CDS 50.0%
GTTCATAACGGCAGCCAACT+AGG - chr3_4:13389955-13389974 Msa0491160:intron 50.0%
CACGTATGTAATGTGCCAGC+TGG - chr3_4:13390215-13390234 Msa0491160:intron 50.0%
! ATCTAGTTTCTGCAGCCAGC+TGG + chr3_4:13390233-13390252 None:intergenic 50.0%
CGGCTCCAATAGATTTGCAC+TGG + chr3_4:13390378-13390397 None:intergenic 50.0%
ACATCCTTCACACTCAGGAC+TGG - chr3_4:13390966-13390985 Msa0491160:intron 50.0%
ATGTCCAGTCCTGAGTGTGA+AGG + chr3_4:13390973-13390992 None:intergenic 50.0%
! CGTTTAAGATGGCGAGACCT+GGG + chr3_4:13391015-13391034 None:intergenic 50.0%
! TCGTTTAAGATGGCGAGACC+TGG + chr3_4:13391016-13391035 None:intergenic 50.0%
GTGAAACTCCACACACACCT+AGG - chr3_4:13391415-13391434 Msa0491160:intron 50.0%
GCTCAACATAGACTGGATCG+AGG - chr3_4:13391995-13392014 Msa0491160:intron 50.0%
! GACATGAGGCGTTCATTGTC+TGG - chr3_4:13392043-13392062 Msa0491160:intron 50.0%
TATGTTCCCGGTACTTCGTC+AGG + chr3_4:13392275-13392294 None:intergenic 50.0%
!! GACGAAGTACCGGGAACATA+AGG - chr3_4:13392275-13392294 Msa0491160:intron 50.0%
TCGCTTACTGCGTGATATGC+CGG - chr3_4:13392442-13392461 Msa0491160:intron 50.0%
TCATCCAGTTGGAGCAAGGA+TGG - chr3_4:13392633-13392652 Msa0491160:intron 50.0%
TGTCGTCGCGATTGAAACGA+AGG + chr3_4:13392718-13392737 None:intergenic 50.0%
AGGCTCCAACGTTCAACACG+CGG - chr3_4:13387067-13387086 Msa0491160:three_prime_UTR 55.0%
AGTTGCCGCGTGTTGAACGT+TGG + chr3_4:13387075-13387094 None:intergenic 55.0%
CCCGGCCACCACCAAAAAAA+AGG + chr3_4:13387760-13387779 None:intergenic 55.0%
AATGAGCAGGAAGCCAGGGA+AGG - chr3_4:13388223-13388242 Msa0491160:CDS 55.0%
! AGAGGTATGAGACCAGGTGG+GGG + chr3_4:13389367-13389386 None:intergenic 55.0%
TTCAAACCACTGGCCGCAAC+AGG - chr3_4:13390340-13390359 Msa0491160:intron 55.0%
TCAAACCACTGGCCGCAACA+GGG - chr3_4:13390341-13390360 Msa0491160:intron 55.0%
CACCTCTTGCCTTCATCCAC+AGG - chr3_4:13391492-13391511 Msa0491160:intron 55.0%
CTCCTGTGGATGAAGGCAAG+AGG + chr3_4:13391497-13391516 None:intergenic 55.0%
GTGCATGCTCCTGTGGATGA+AGG + chr3_4:13391504-13391523 None:intergenic 55.0%
! ATCCACAGGAGCATGCACCT+TGG - chr3_4:13391506-13391525 Msa0491160:intron 55.0%
GTTTGGACCACTGTGCGCTT+TGG - chr3_4:13392019-13392038 Msa0491160:intron 55.0%
CGCTTACTGCGTGATATGCC+GGG - chr3_4:13392443-13392462 Msa0491160:intron 55.0%
GCTTACTGCGTGATATGCCG+GGG - chr3_4:13392444-13392463 Msa0491160:intron 55.0%
TGCCGGGGAAATACTACTGC+AGG - chr3_4:13392459-13392478 Msa0491160:intron 55.0%
GACTCCATCCTTGCTCCAAC+TGG + chr3_4:13392640-13392659 None:intergenic 55.0%
CGTCGCGATTGAAACGAAGG+AGG + chr3_4:13392715-13392734 None:intergenic 55.0%
GAGACAGAGAATCCCCCACC+TGG - chr3_4:13389352-13389371 Msa0491160:CDS 60.0%
TGAAACCCTGTTGCGGCCAG+TGG + chr3_4:13390349-13390368 None:intergenic 60.0%
AGCCAAGGTGCATGCTCCTG+TGG + chr3_4:13391511-13391530 None:intergenic 60.0%
CATGTCGCCAAAGCGCACAG+TGG + chr3_4:13392029-13392048 None:intergenic 60.0%
CTGTGCGCTTTGGCGACATG+AGG - chr3_4:13392029-13392048 Msa0491160:intron 60.0%
! CAGGTCTAGGGTTCGAGCCC+CGG + chr3_4:13387778-13387797 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 13386885 13393189 13386885 ID=Msa0491160;Name=Msa0491160
chr3_4 mRNA 13386885 13393189 13386885 ID=Msa0491160-mRNA-1;Parent=Msa0491160;Name=Msa0491160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=66|0.85|0.75|1|1|1|8|480|428
chr3_4 exon 13386885 13387532 13386885 ID=Msa0491160-mRNA-1:exon:4056;Parent=Msa0491160-mRNA-1
chr3_4 exon 13387778 13387902 13387778 ID=Msa0491160-mRNA-1:exon:4055;Parent=Msa0491160-mRNA-1
chr3_4 exon 13388010 13388107 13388010 ID=Msa0491160-mRNA-1:exon:4054;Parent=Msa0491160-mRNA-1
chr3_4 exon 13388196 13388314 13388196 ID=Msa0491160-mRNA-1:exon:4053;Parent=Msa0491160-mRNA-1
chr3_4 exon 13389350 13389559 13389350 ID=Msa0491160-mRNA-1:exon:4052;Parent=Msa0491160-mRNA-1
chr3_4 exon 13389656 13389743 13389656 ID=Msa0491160-mRNA-1:exon:4051;Parent=Msa0491160-mRNA-1
chr3_4 exon 13391571 13391842 13391571 ID=Msa0491160-mRNA-1:exon:4050;Parent=Msa0491160-mRNA-1
chr3_4 exon 13392917 13393189 13392917 ID=Msa0491160-mRNA-1:exon:4049;Parent=Msa0491160-mRNA-1
chr3_4 five_prime_UTR 13393124 13393189 13393124 ID=Msa0491160-mRNA-1:five_prime_utr;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13392917 13393123 13392917 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13391571 13391842 13391571 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13389656 13389743 13389656 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13389350 13389559 13389350 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13388196 13388314 13388196 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13388010 13388107 13388010 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13387778 13387902 13387778 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 CDS 13387365 13387532 13387365 ID=Msa0491160-mRNA-1:cds;Parent=Msa0491160-mRNA-1
chr3_4 three_prime_UTR 13386885 13387364 13386885 ID=Msa0491160-mRNA-1:three_prime_utr;Parent=Msa0491160-mRNA-1
Gene Sequence

>Msa0491160

ATGTCTTCTGTCTCATCTTCTTCTCTTCCCACAACCTCTTTCTTCTCTACATTCTCCAAATTCCAATTTTGCCCTCCTTCATTTTCTTCTTCATCCCCTCGTGTGATATGTCATGGAGGCTCCAACGTTCAACACGCGGCAACTGACCTCAAGTTCTTCTTGCATGATGCTCTTGATGCTTCTGGAATTGATACTGTTCATGCCAGAGAAGCCAGGGAAGGATTCTGTTCACAAATTAAGAGACTTACTGATATTGAGAAAGAAACCAGCATCTGCATCAACAGGCATGTTGATTTGGGCAGAACTGCTCTCTATATAGCTGCAGAAGATGATTCTCTGGTATCACATTCGTCGGTTCCACTTCCTGTCGATGCTTTTGTTGCAAGATTAGATGATCTTTCGATGGACTACTGTCCTCATTACACCCCTTCATATGATTCATCGCCCGAGAAGTTTTTAGAGAGCATAGAAAGATTTTTATTAACTGTTTCAAACCACTGGCCGCAACAGGGTTTCAGAAGAACCAGTGCAAATCTATTGGAGCCGCAAGCACTCTATCTTCACTCGGTTTTGACTCATCGTTCGGGATCACCTGCAATGCTGTCACTTATATACTCAGAAATTCTAAAAATGCTTCGTTTATGGGGCCTTTTGTATTTTGATGCTGAAATTTTCTACCCTCATGATATTTTTAATGTTCCTAAAGGCTATCATAAGCTGAAAAGCAAGGAATCAGACCAAGCACACATAATGACATCAGGGAATCTATTGGTTGAGATATTAAATAATCTGAAGCATGCATTCTGGCCTTTTCATCATGATCATACAAAAACCTTATTTTTAAGGGCAGCACATGCTGCAAACTGTGTTGACAGATCTGATTTTGTTGGAGAAAGTGGCTCTCAAATTGCTTCGGCTAAGGCTGCTCAACATAGACTGGATCGAGGTGTTTGGACCACTGTGCGCTTTGGCGACATGAGGCGTTCATTGTCTGCATGTGAACGCCTTATCCTCGTTACAAATGATCCAAATGAGCTAAGAGATTACAGCATTCTCCTCTATCATTGTGGATTATATGAGGAGTCGCTACAATACCTGACGAAGTACCGGGAACATAAGAACTCATCTACGCAAGTGCTGACATCATCAGACTCTGAAAGTGACATGGAAGAAGATGCTGCCGTCGATAAACTAATAACACGATTAAATCTCATCCAGTTGGAGCAAGGATGGAGTCAGCAGTCCGTTTCTAGAAAGTTTCTCGGTAATAACTCTGAACCATGGTAG

Protein sequence

>Msa0491160

MSSVSSSSLPTTSFFSTFSKFQFCPPSFSSSSPRVICHGGSNVQHAATDLKFFLHDALDASGIDTVHAREAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPLPVDAFVARLDDLSMDYCPHYTPSYDSSPEKFLESIERFLLTVSNHWPQQGFRRTSANLLEPQALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPHDIFNVPKGYHKLKSKESDQAHIMTSGNLLVEILNNLKHAFWPFHHDHTKTLFLRAAHAANCVDRSDFVGESGSQIASAKAAQHRLDRGVWTTVRFGDMRRSLSACERLILVTNDPNELRDYSILLYHCGLYEESLQYLTKYREHKNSSTQVLTSSDSESDMEEDAAVDKLITRLNLIQLEQGWSQQSVSRKFLGNNSEPW*