AlfalfaGEDB | Msa1166330

M. sativa cultivar zhongmu-4 / Msa1166330

KEGG: K18342
GO: -
PFAM: PF02338.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166330	XP_003625873.3	97.826	368	5	1	1	368	1	365	0.0	741

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166330	sp\|Q9LYC7\|OTU5_ARATH	66.555	299	83	4	78	366	36	327	2.31e-123	362

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166330	G7KRS0	97.492	319	5	1	50	368	1	316	0.0	644

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa1166330	0.811582	6.515853e-51	-8.615850e-47
Msa0008090	Msa1166330	0.813604	2.353032e-51	-8.615850e-47
Msa0016670	Msa1166330	0.808445	3.085815e-50	-8.615850e-47
Msa0027260	Msa1166330	0.863600	2.218128e-64	-8.615850e-47
Msa0032260	Msa1166330	0.857092	2.065442e-62	-8.615850e-47
Msa0040690	Msa1166330	0.821658	3.590914e-53	-8.615850e-47
Msa0042280	Msa1166330	0.806702	7.234306e-50	-8.615850e-47
Msa0047160	Msa1166330	0.843382	1.450383e-58	-8.615850e-47
Msa0047980	Msa1166330	0.827568	1.456231e-54	-8.615850e-47
Msa0048180	Msa1166330	0.847835	8.993096e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166330	MtrunA17_Chr4g0058221	87.500	368	4	1	1	368	1	326	0.0	642
Msa1166330	MtrunA17_Chr7g0268741	87.228	368	5	1	1	368	1	326	0.0	639

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166330	AT3G62940.1	66.555	299	83	4	78	366	20	311	1.20e-124	362
Msa1166330	AT3G62940.5	66.555	299	83	4	78	366	20	311	1.20e-124	362
Msa1166330	AT3G62940.3	66.555	299	83	4	78	366	36	327	2.34e-124	362
Msa1166330	AT3G62940.2	66.555	299	83	4	78	366	36	327	2.34e-124	362
Msa1166330	AT3G62940.4	66.555	299	83	4	78	366	36	327	2.34e-124	362
Msa1166330	AT5G67170.2	30.128	156	81	6	208	363	31	158	7.07e-11	63.5
Msa1166330	AT5G67170.1	30.128	156	81	6	208	363	31	158	7.07e-11	63.5

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Find 97 sgRNAs with CRISPR-Local

Find 1348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCAATATGGACAATT+TGG	0.304162	7_4:-58455653	Msa1166330:CDS
AAATGGCAGCTGCTTACATG+AGG	0.636892	7_4:-58455324	Msa1166330:CDS
AAATTCTCTGACAAACAAAA+TGG	0.255126	7_4:+58455280	None:intergenic
AAGGAGTATAAATCAGCTGA+TGG	0.610891	7_4:-58455088	Msa1166330:CDS
AAGTAGAATCCACAGCAATA+TGG	0.313389	7_4:-58455201	Msa1166330:CDS
AATCAGTTGGCCCACCTCTT+TGG	0.262527	7_4:-58455382	Msa1166330:CDS
AATGGGACAAATATATCACA+TGG	0.664200	7_4:-58454965	Msa1166330:three_prime_UTR
AATTCTCTGACAAACAAAAT+GGG	0.488222	7_4:+58455281	None:intergenic
AATTGACAATTTATAATTTA+TGG	0.051597	7_4:-58454828	Msa1166330:three_prime_UTR
AATTTGGTGAAGGCCATAGC+TGG	0.500352	7_4:-58455637	Msa1166330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACAAATTAAGTTCCTTCTT+GGG	-	chr7_4:58455063-58455082	Msa1166330:CDS	30.0%
TAGCCTATGAAAACAACTTA+TGG	+	chr7_4:58455306-58455325	None:intergenic	30.0%
TTAAGCCTTTAACATACGTT+AGG	-	chr7_4:58456183-58456202	Msa1166330:intron	30.0%
ATTCTGTTGATCAAATACGT+AGG	-	chr7_4:58456290-58456309	Msa1166330:intron	30.0%
TTCTGTTGATCAAATACGTA+GGG	-	chr7_4:58456291-58456310	Msa1166330:intron	30.0%
TCTTGATATAAATACGCAGA+AGG	+	chr7_4:58456455-58456474	None:intergenic	30.0%
AATCTCAAACATACTCATTG+CGG	+	chr7_4:58456745-58456764	None:intergenic	30.0%
AATAAATAGAGGATAGAGGA+GGG	+	chr7_4:58457080-58457099	None:intergenic	30.0%
ATGGAATAAATAGAGGATAG+AGG	+	chr7_4:58457084-58457103	None:intergenic	30.0%
GAGTGAAATGGAATAAATAG+AGG	+	chr7_4:58457091-58457110	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	58454692	58459694	58454692	ID=Msa1166330;Name=Msa1166330
chr7_4	mRNA	58454692	58459694	58454692	ID=Msa1166330-mRNA-1;Parent=Msa1166330;Name=Msa1166330-mRNA-1;_AED=0.25;_eAED=0.25;_QI=125\|1\|1\|1\|0.5\|0.66\|3\|299\|368
chr7_4	exon	58454692	58455990	58454692	ID=Msa1166330-mRNA-1:exon:17932;Parent=Msa1166330-mRNA-1
chr7_4	exon	58458353	58458469	58458353	ID=Msa1166330-mRNA-1:exon:17931;Parent=Msa1166330-mRNA-1
chr7_4	exon	58459580	58459694	58459580	ID=Msa1166330-mRNA-1:exon:17930;Parent=Msa1166330-mRNA-1
chr7_4	five_prime_UTR	58459580	58459694	58459580	ID=Msa1166330-mRNA-1:five_prime_utr;Parent=Msa1166330-mRNA-1
chr7_4	five_prime_UTR	58458460	58458469	58458460	ID=Msa1166330-mRNA-1:five_prime_utr;Parent=Msa1166330-mRNA-1
chr7_4	CDS	58458353	58458459	58458353	ID=Msa1166330-mRNA-1:cds;Parent=Msa1166330-mRNA-1
chr7_4	CDS	58454991	58455990	58454991	ID=Msa1166330-mRNA-1:cds;Parent=Msa1166330-mRNA-1
chr7_4	three_prime_UTR	58454692	58454990	58454692	ID=Msa1166330-mRNA-1:three_prime_utr;Parent=Msa1166330-mRNA-1

Gene Sequence

>Msa1166330

ATGGAGGATACCCAAGAAGTTGAGGAGGTACAAGAAGAAGTGATTTCAGACAAGACATCTGAAAACAAGGAAGAAGAAACTCGCGATGAAATTCTTGCACGCCACAGATATTCCATGATCTTACATAGACTTCTGAATTTGACAAGCATGTGGGCTACTGAAGTTCTTAAGTTCTTATGGTTCTTATGGTTCTCATGCAATGCATATTTGTCCACATGGACATGTATTTTCAGGAAAGAGATATCACAACTGCAGAAAAAAGAAGTTGAAATGAAAAAACAAGCAGCTAGAGGTAGCAAGGCTGAGCAAAAAGCTAAGAAAAAGCAAGTGGAGGAAGAGGTTTCTCAAATCTCTGCTAAGCTCAAGGAGAAGCAGGCCAAAGAACTGTCTGCTTTAGGCTATAGCAGTGGTAACGGAAATGAAAAGAGCAATATGGACAATTTGGTGAAGGCCATAGCTGGAGTATCTGTTAGTAGTCAACCTGAGAATACAAAGGTCAGCAAGGCCAAACAGAGGCGTGACAAAAGAGCTCAACAAGAAGCAGAGAGAGAACAGAGAATCCAAGCAGAGCAGAATGACATTATAAGTGATCGCACGGTTGAAAATGAGAAACTCGAAAGGAAGTTGAAGCCTCTTGGTTTGACTGTGTGTGAAATAAAGCCTGATGGGCACTGCCTTTACAGAGCTGTTGAGAATCAGTTGGCCCACCTCTTTGGGGGAAAATCTCCATATACATACCAACAACTTCGAGAAATGGCAGCTGCTTACATGAGGAAGCATACATCGGATTTCCTCCCATTTTGTTTGTCAGAGAATTTGATTGAAGGTGATTCTGATGAATCGATTGCTCAAAAGTTTGAAAATTATTGCAAAGAAGTAGAATCCACAGCAATATGGGGAGGACAACTAGAGCTTGGTGCCTTGACTCACTGCCTGAAGAAGCATATTATGATATTTTCAGGGTCCTTCCCTGATGTGGAGATGGGGAAGGAGTATAAATCAGCTGATGGTATTGGTTCGTCTGGTTCCAGTATCATGCTTTCTTACCATATGCATGCTTTTGGGCTTGGTGAGCATTATAATTCTGTGGTCCCAATCCCAATATGA

Protein sequence

>Msa1166330

MEDTQEVEEVQEEVISDKTSENKEEETRDEILARHRYSMILHRLLNLTSMWATEVLKFLWFLWFSCNAYLSTWTCIFRKEISQLQKKEVEMKKQAARGSKAEQKAKKKQVEEEVSQISAKLKEKQAKELSALGYSSGNGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAEREQRIQAEQNDIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPYTYQQLREMAAAYMRKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVVPIPI*