AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166340 MtrunA17_Chr4g0058221 87.500 368 4 1 1 368 1 326 0.0 642
Msa1166340 MtrunA17_Chr7g0268741 87.228 368 5 1 1 368 1 326 0.0 639
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166340 AT3G62940.1 66.555 299 83 4 78 366 20 311 1.20e-124 362
Msa1166340 AT3G62940.5 66.555 299 83 4 78 366 20 311 1.20e-124 362
Msa1166340 AT3G62940.3 66.555 299 83 4 78 366 36 327 2.34e-124 362
Msa1166340 AT3G62940.2 66.555 299 83 4 78 366 36 327 2.34e-124 362
Msa1166340 AT3G62940.4 66.555 299 83 4 78 366 36 327 2.34e-124 362
Msa1166340 AT5G67170.2 30.128 156 81 6 208 363 31 158 7.07e-11 63.5
Msa1166340 AT5G67170.1 30.128 156 81 6 208 363 31 158 7.07e-11 63.5

Find 97 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGACAATTTATAATTTA+TGG 0.051597 7_4:-58463514 Msa1166340:three_prime_UTR
TTAAGTTCTTATGGTTCTTA+TGG 0.202648 7_4:-58464595 Msa1166340:CDS
CTTGTACCTCCTCAACTTCT+TGG 0.216265 7_4:+58467115 None:intergenic
CTGAAGTTCTTAAGTTCTTA+TGG 0.228864 7_4:-58464604 Msa1166340:CDS
TCTTACCATATGCATGCTTT+TGG 0.248740 7_4:-58463720 Msa1166340:CDS
ATCAGTTGGCCCACCTCTTT+GGG 0.250180 7_4:-58464067 Msa1166340:CDS
AAATTCTCTGACAAACAAAA+TGG 0.255126 7_4:+58463966 None:intergenic
AATCAGTTGGCCCACCTCTT+TGG 0.262527 7_4:-58464068 Msa1166340:CDS
CGAAGTTGTTGGTATGTATA+TGG 0.265726 7_4:+58464035 None:intergenic
TTGTCCCATTTGATCATATT+GGG 0.296913 7_4:+58463664 None:intergenic
AAAGAGCAATATGGACAATT+TGG 0.304162 7_4:-58464339 Msa1166340:CDS
TTTGTCCCATTTGATCATAT+TGG 0.311395 7_4:+58463663 None:intergenic
TTGAAAACTTAGTTGTGATT+TGG 0.313170 7_4:-58463568 Msa1166340:three_prime_UTR
AAGTAGAATCCACAGCAATA+TGG 0.313389 7_4:-58463887 Msa1166340:CDS
GCCTAAAGCAGACAGTTCTT+TGG 0.342046 7_4:+58464385 None:intergenic
TTGTACCTCCTCAACTTCTT+GGG 0.356733 7_4:+58467116 None:intergenic
CCATTTGATCATATTGGGAT+TGG 0.377862 7_4:+58463669 None:intergenic
TTGCTGACCTTTGTATTCTC+AGG 0.380081 7_4:+58464281 None:intergenic
ATATCATAATATGCTTCTTC+AGG 0.382290 7_4:+58463829 None:intergenic
CTGTAAAGGCAGTGCCCATC+AGG 0.392181 7_4:+58464101 None:intergenic
AGACAGCAGCTCCGTCAAAC+TGG 0.394892 7_4:-58468337 Msa1166340:five_prime_UTR
TTGCTCAACAGCCAGGAGTA+TGG 0.399459 7_4:-58463602 Msa1166340:three_prime_UTR
CTGCCATTTCTCGAAGTTGT+TGG 0.400794 7_4:+58464024 None:intergenic
TCCTTCCCCATCTCCACATC+AGG 0.403765 7_4:+58463792 None:intergenic
AGTAGAATCCACAGCAATAT+GGG 0.405492 7_4:-58463886 Msa1166340:CDS
CATTTGATCATATTGGGATT+GGG 0.415085 7_4:+58463670 None:intergenic
CCAATCCCAATATGATCAAA+TGG 0.417510 7_4:-58463669 Msa1166340:exon
TAATGTCATTCTGCTCTGCT+TGG 0.417976 7_4:+58464201 None:intergenic
GTCCTTCCCTGATGTGGAGA+TGG 0.419141 7_4:-58463799 Msa1166340:CDS
CTGTTGAGCAAAACGCTACA+TGG 0.433634 7_4:+58463614 None:intergenic
ATGAAATTCTTGCACGCCAC+AGG 0.433765 7_4:-58467041 Msa1166340:intron
GCCAAAGAACTGTCTGCTTT+AGG 0.437434 7_4:-58464386 Msa1166340:CDS
CGGAAATGAAAAGAGCAATA+TGG 0.438701 7_4:-58464348 Msa1166340:CDS
ATACCAACAACTTCGAGAAA+TGG 0.439245 7_4:-58464027 Msa1166340:CDS
GTTAAGAAATGTACAACTAT+AGG 0.439256 7_4:+58463540 None:intergenic
TCCTTCCCTGATGTGGAGAT+GGG 0.451922 7_4:-58463798 Msa1166340:CDS
GAAAGGAAGTTGAAGCCTCT+TGG 0.456629 7_4:-58464146 Msa1166340:CDS
GCTGATGGTATTGGTTCGTC+TGG 0.457026 7_4:-58463759 Msa1166340:CDS
TATAAATCAGCTGATGGTAT+TGG 0.465751 7_4:-58463768 Msa1166340:CDS
TGCTAAGCTCAAGGAGAAGC+AGG 0.474324 7_4:-58464408 Msa1166340:CDS
TTCAGGGTCCTTCCCTGATG+TGG 0.478905 7_4:-58463805 Msa1166340:CDS
CAGAAGTCTATGTAAGATCA+TGG 0.484555 7_4:+58464649 None:intergenic
AATTCTCTGACAAACAAAAT+GGG 0.488222 7_4:+58463967 None:intergenic
ATGGTAAGAAAGCATGATAC+TGG 0.496674 7_4:+58463734 None:intergenic
ACTTCTTGGGTATCCTCCAT+TGG 0.499728 7_4:+58467129 None:intergenic
AATTTGGTGAAGGCCATAGC+TGG 0.500352 7_4:-58464323 Msa1166340:CDS
CAAGCCCAAAAGCATGCATA+TGG 0.502108 7_4:+58463715 None:intergenic
GTGCTGCAACTCCAGTTTGA+CGG 0.506400 7_4:+58468326 None:intergenic
GAGTTGCAGCACTCACTAGC+CGG 0.517009 7_4:-58468315 Msa1166340:five_prime_UTR
TTGTCAGAGAATTTGATTGA+AGG 0.523344 7_4:-58463957 Msa1166340:CDS
CAATCCCAATATGATCAAAT+GGG 0.523486 7_4:-58463668 Msa1166340:exon
GATTCTCAACAGCTCTGTAA+AGG 0.528906 7_4:+58464087 None:intergenic
ACAAGCAGCTAGAGGTAGCA+AGG 0.534438 7_4:-58464483 Msa1166340:CDS
GCAAGTCCGCCAGCGTTACC+CGG 0.541874 7_4:+58468296 None:intergenic
AGTTGCAGCACTCACTAGCC+GGG 0.547355 7_4:-58468314 Msa1166340:five_prime_UTR
TTCTGAATTTGACAAGCATG+TGG 0.552211 7_4:-58464631 Msa1166340:CDS
TTGTCCTCCCCATATTGCTG+TGG 0.559595 7_4:+58463878 None:intergenic
TGGTGAGCATTATAATTCTG+TGG 0.561039 7_4:-58463694 Msa1166340:CDS
TTAACCTTCAGCCATACTCC+TGG 0.561547 7_4:+58463591 None:intergenic
CAGAGCTGTTGAGAATCAGT+TGG 0.563261 7_4:-58464081 Msa1166340:CDS
TTAGGCTATAGCAGTGGTAA+CGG 0.571066 7_4:-58464368 Msa1166340:CDS
TCAAATCTCTGCTAAGCTCA+AGG 0.572536 7_4:-58464417 Msa1166340:CDS
CCCCATCTCCACATCAGGGA+AGG 0.576306 7_4:+58463797 None:intergenic
TGGGGAGGACAACTAGAGCT+TGG 0.581684 7_4:-58463867 Msa1166340:CDS
ACTAACAGATACTCCAGCTA+TGG 0.583680 7_4:+58464310 None:intergenic
CCTTCCCTGATGTGGAGATG+GGG 0.586628 7_4:-58463797 Msa1166340:CDS
CTTCTTCAGGCAGTGAGTCA+AGG 0.591792 7_4:+58463842 None:intergenic
GGAGGATACCCAAGAAGTTG+AGG 0.596237 7_4:-58467124 Msa1166340:CDS
CACTAGCCGGGTAACGCTGG+CGG 0.598134 7_4:-58468302 Msa1166340:five_prime_UTR
CCCTGATGTGGAGATGGGGA+AGG 0.605910 7_4:-58463793 Msa1166340:CDS
CAGTTGGCCCACCTCTTTGG+GGG 0.609264 7_4:-58464065 Msa1166340:CDS
AAGGAGTATAAATCAGCTGA+TGG 0.610891 7_4:-58463774 Msa1166340:CDS
TGACATTATAAGTGATCGCA+CGG 0.613584 7_4:-58464186 Msa1166340:CDS
TTGAAAATGAGAAACTCGAA+AGG 0.613680 7_4:-58464163 Msa1166340:CDS
GCAATGCATATTTGTCCACA+TGG 0.615480 7_4:-58464565 Msa1166340:CDS
GTGTGTGAAATAAAGCCTGA+TGG 0.616224 7_4:-58464116 Msa1166340:CDS
TCTGAATTTGACAAGCATGT+GGG 0.622543 7_4:-58464630 Msa1166340:CDS
AGACAAGACATCTGAAAACA+AGG 0.625700 7_4:-58467079 Msa1166340:CDS
CAATATGGACAATTTGGTGA+AGG 0.628539 7_4:-58464333 Msa1166340:CDS
TGTTGAGCAAAACGCTACAT+GGG 0.634022 7_4:+58463615 None:intergenic
TGAGAATACAAAGGTCAGCA+AGG 0.636690 7_4:-58464279 Msa1166340:CDS
AAATGGCAGCTGCTTACATG+AGG 0.636892 7_4:-58464010 Msa1166340:CDS
GAATCCACAGCAATATGGGG+AGG 0.646499 7_4:-58463882 Msa1166340:CDS
CCTTCCCCATCTCCACATCA+GGG 0.653564 7_4:+58463793 None:intergenic
TGTGTGAAATAAAGCCTGAT+GGG 0.653902 7_4:-58464115 Msa1166340:CDS
TCAGTTGGCCCACCTCTTTG+GGG 0.655302 7_4:-58464066 Msa1166340:CDS
TCTCTGACAAACAAAATGGG+AGG 0.660756 7_4:+58463970 None:intergenic
GTAGAATCCACAGCAATATG+GGG 0.661003 7_4:-58463885 Msa1166340:CDS
ACAGCCAGGAGTATGGCTGA+AGG 0.663463 7_4:-58463595 Msa1166340:three_prime_UTR
AATGGGACAAATATATCACA+TGG 0.664200 7_4:-58463651 Msa1166340:three_prime_UTR
TCACACACAGTCAAACCAAG+AGG 0.665043 7_4:+58464131 None:intergenic
GGATACCCAAGAAGTTGAGG+AGG 0.668985 7_4:-58467121 Msa1166340:CDS
TTACATGAGGAAGCATACAT+CGG 0.677679 7_4:-58463997 Msa1166340:CDS
TAGTCAACCTGAGAATACAA+AGG 0.678538 7_4:-58464288 Msa1166340:CDS
CCTGAAAATACATGTCCATG+TGG 0.700874 7_4:+58464550 None:intergenic
AGGTCAGCAAGGCCAAACAG+AGG 0.705842 7_4:-58464268 Msa1166340:CDS
TCTGCTTTAGGCTATAGCAG+TGG 0.730219 7_4:-58464374 Msa1166340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCATATAACAAAATATA+AGG - chr7_4:58463824-58463843 Msa1166340:CDS 10.0%
!!! TTTATTGTTTTTTAAAAACA+AGG - chr7_4:58465575-58465594 Msa1166340:intron 10.0%
!! AATTGACAATTTATAATTTA+TGG - chr7_4:58468229-58468248 Msa1166340:intron 10.0%
!!! AACAATGTAGATTTTATAAT+CGG - chr7_4:58464356-58464375 Msa1166340:CDS 15.0%
!!! AAAATTATTTTATGTTTCGT+TGG - chr7_4:58464436-58464455 Msa1166340:CDS 15.0%
!! ACAATAAAATTGAGATAAAA+AGG - chr7_4:58464471-58464490 Msa1166340:CDS 15.0%
!! AACCATATATATTGAAAAAT+AGG + chr7_4:58465018-58465037 None:intergenic 15.0%
!!! TTTTATCTTATATATTGTGA+CGG + chr7_4:58465207-58465226 None:intergenic 15.0%
!!! TCATTTTTAAATGTTTGTTT+AGG - chr7_4:58465481-58465500 Msa1166340:intron 15.0%
!! AAAACTATTCAAAAATTTAG+AGG + chr7_4:58466253-58466272 None:intergenic 15.0%
!!! ACTAAATCAGATAATTTTTT+TGG + chr7_4:58466872-58466891 None:intergenic 15.0%
!! ACTGTTATTAGTAGTTAATT+AGG - chr7_4:58463557-58463576 Msa1166340:three_prime_UTR 20.0%
!! CTGTTATTAGTAGTTAATTA+GGG - chr7_4:58463558-58463577 Msa1166340:three_prime_UTR 20.0%
!! ATTATGAAAATAAGCTGAAA+GGG - chr7_4:58464026-58464045 Msa1166340:CDS 20.0%
!! AGCACAATAAAAATGAATAA+AGG - chr7_4:58464403-58464422 Msa1166340:CDS 20.0%
!! AACCAAGATAAAATAAGTTA+AGG - chr7_4:58464811-58464830 Msa1166340:intron 20.0%
!!! TACCTTAACTTATTTTATCT+TGG + chr7_4:58464816-58464835 None:intergenic 20.0%
!!! GGTTTTATTATATTAGTGAA+AGG - chr7_4:58464900-58464919 Msa1166340:intron 20.0%
!!! GTCCTATTTTTCAATATATA+TGG - chr7_4:58465013-58465032 Msa1166340:intron 20.0%
!! AATACCAATTCAAATTTCAA+AGG - chr7_4:58465178-58465197 Msa1166340:intron 20.0%
!!! AGTATGTTTGAGATTTTTTA+AGG - chr7_4:58465441-58465460 Msa1166340:intron 20.0%
!!! TTCTAAAATGAAAAGCTATT+AGG - chr7_4:58465535-58465554 Msa1166340:intron 20.0%
!!! ATTGTTTTTTAAAAACAAGG+AGG - chr7_4:58465578-58465597 Msa1166340:intron 20.0%
!!! TTTTAAAAAAAGTGGCTTTA+TGG - chr7_4:58465633-58465652 Msa1166340:intron 20.0%
!!! TTTAAAAAAAGTGGCTTTAT+GGG - chr7_4:58465634-58465653 Msa1166340:intron 20.0%
!! AAAAACAGACACAATAAAAA+GGG + chr7_4:58466062-58466081 None:intergenic 20.0%
!! AAAAAACAGACACAATAAAA+AGG + chr7_4:58466063-58466082 None:intergenic 20.0%
!! GTTAATGCATTATTTATCAA+GGG + chr7_4:58466148-58466167 None:intergenic 20.0%
!! AGTTAATGCATTATTTATCA+AGG + chr7_4:58466149-58466168 None:intergenic 20.0%
!! TTTCTTATTCATTGATGTAA+AGG + chr7_4:58466189-58466208 None:intergenic 20.0%
!! AAATTATCTGATTTAGTGTT+TGG - chr7_4:58466875-58466894 Msa1166340:intron 20.0%
!! AATACAAAACAAAGCAAAAA+TGG + chr7_4:58467045-58467064 None:intergenic 20.0%
!!! AAGCATATTATGATATTTTC+AGG - chr7_4:58467921-58467940 Msa1166340:intron 20.0%
!!! AGCATATTATGATATTTTCA+GGG - chr7_4:58467922-58467941 Msa1166340:intron 20.0%
!!! CAATTTTTAGTAACTGTTTG+CGG - chr7_4:58463519-58463538 Msa1166340:three_prime_UTR 25.0%
! CATTATGAAAATAAGCTGAA+AGG - chr7_4:58464025-58464044 Msa1166340:CDS 25.0%
! TTATGAAAATAAGCTGAAAG+GGG - chr7_4:58464027-58464046 Msa1166340:CDS 25.0%
!!! AGCTATTTGTGTTAGTTTTA+GGG + chr7_4:58464130-58464149 None:intergenic 25.0%
!!! TAGCTATTTGTGTTAGTTTT+AGG + chr7_4:58464131-58464150 None:intergenic 25.0%
! ATGTTCATTATTGAACAATG+AGG - chr7_4:58464168-58464187 Msa1166340:CDS 25.0%
! TGTTCATTATTGAACAATGA+GGG - chr7_4:58464169-58464188 Msa1166340:CDS 25.0%
! TACAATCAAAGAGTAAATGA+AGG - chr7_4:58464267-58464286 Msa1166340:CDS 25.0%
! TGTTAAATCACAATACATGA+TGG - chr7_4:58464497-58464516 Msa1166340:CDS 25.0%
! GTTAAATCACAATACATGAT+GGG - chr7_4:58464498-58464517 Msa1166340:CDS 25.0%
! TGCTTTCAAATTTCAATACA+TGG + chr7_4:58464933-58464952 None:intergenic 25.0%
!!! ATTCACTTGTTGTTTTTGTT+AGG - chr7_4:58464952-58464971 Msa1166340:intron 25.0%
!!! TTCACTTGTTGTTTTTGTTA+GGG - chr7_4:58464953-58464972 Msa1166340:intron 25.0%
! GAAATTTGAATTGGTATTCT+AGG + chr7_4:58465176-58465195 None:intergenic 25.0%
!! ATAGAGTTCTTTTAAATGGT+TGG - chr7_4:58465289-58465308 Msa1166340:intron 25.0%
! AGAAATAAGTGAGAAATAGA+GGG + chr7_4:58465879-58465898 None:intergenic 25.0%
! AAGAAATAAGTGAGAAATAG+AGG + chr7_4:58465880-58465899 None:intergenic 25.0%
!!! AAAGCTTTCATTGATTCATT+TGG - chr7_4:58466328-58466347 Msa1166340:intron 25.0%
! TTAAGTTCTTATGGTTCTTA+TGG - chr7_4:58467148-58467167 Msa1166340:intron 25.0%
! AATTCTCTGACAAACAAAAT+GGG + chr7_4:58467779-58467798 None:intergenic 25.0%
! AAATTCTCTGACAAACAAAA+TGG + chr7_4:58467780-58467799 None:intergenic 25.0%
! ATATCATAATATGCTTCTTC+AGG + chr7_4:58467917-58467936 None:intergenic 25.0%
! TTGAAAACTTAGTTGTGATT+TGG - chr7_4:58468175-58468194 Msa1166340:intron 25.0%
! GTTAAGAAATGTACAACTAT+AGG + chr7_4:58468206-58468225 None:intergenic 25.0%
!!! CTTTTGACAATGATTGATTT+TGG - chr7_4:58468360-58468379 Msa1166340:five_prime_UTR 25.0%
!!! TGCTGTCTTTTGTTGTTTTA+GGG + chr7_4:58463394-58463413 None:intergenic 30.0%
CACAAATTAAGTTCCTTCTT+GGG - chr7_4:58463753-58463772 Msa1166340:CDS 30.0%
TAGCCTATGAAAACAACTTA+TGG + chr7_4:58463996-58464015 None:intergenic 30.0%
!!! TATTTTTAGGGTTGTTCCAA+TGG - chr7_4:58464598-58464617 Msa1166340:CDS 30.0%
TTAAGCCTTTAACATACGTT+AGG - chr7_4:58464873-58464892 Msa1166340:intron 30.0%
ATTCTGTTGATCAAATACGT+AGG - chr7_4:58464980-58464999 Msa1166340:intron 30.0%
TTCTGTTGATCAAATACGTA+GGG - chr7_4:58464981-58465000 Msa1166340:intron 30.0%
TCTTGATATAAATACGCAGA+AGG + chr7_4:58465145-58465164 None:intergenic 30.0%
!! GAGACCTTTGAAATTTGAAT+TGG + chr7_4:58465185-58465204 None:intergenic 30.0%
! CATGAATTTTGTCATTCACT+TGG - chr7_4:58465234-58465253 Msa1166340:intron 30.0%
! TGTTTTGCTCAATTCTTTTG+AGG - chr7_4:58465258-58465277 Msa1166340:intron 30.0%
! GCTCATAGAGTTCTTTTAAA+TGG - chr7_4:58465285-58465304 Msa1166340:intron 30.0%
!! CAGGTCTTTTAAAAAACTGA+AGG + chr7_4:58465399-58465418 None:intergenic 30.0%
AATCTCAAACATACTCATTG+CGG + chr7_4:58465436-58465455 None:intergenic 30.0%
!! TAGTAGGCATAGAAAGTATT+GGG + chr7_4:58465750-58465769 None:intergenic 30.0%
AATAAATAGAGGATAGAGGA+GGG + chr7_4:58465773-58465792 None:intergenic 30.0%
ATGGAATAAATAGAGGATAG+AGG + chr7_4:58465777-58465796 None:intergenic 30.0%
GAGTGAAATGGAATAAATAG+AGG + chr7_4:58465784-58465803 None:intergenic 30.0%
AGTATGAATTGTAACTAACC+TGG + chr7_4:58465828-58465847 None:intergenic 30.0%
! AAGCTTTATATTGTAGCACT+AGG - chr7_4:58466033-58466052 Msa1166340:intron 30.0%
!!! CTGTTTCTTTTTTAACACAC+TGG - chr7_4:58466113-58466132 Msa1166340:intron 30.0%
GATGTAAAGGAGAAAAAGAA+CGG + chr7_4:58466176-58466195 None:intergenic 30.0%
!! ATTGATTCATTTGGCTTGAT+GGG - chr7_4:58466337-58466356 Msa1166340:intron 30.0%
TAGAATTATATAGTCCCACA+TGG - chr7_4:58466524-58466543 Msa1166340:intron 30.0%
! TTATATTGGTGATTCCATGT+GGG + chr7_4:58466541-58466560 None:intergenic 30.0%
CAATATAAGGATGATTGAAG+CGG - chr7_4:58466553-58466572 Msa1166340:intron 30.0%
!! TGAATTCAGTCATTTTGTCT+GGG + chr7_4:58466600-58466619 None:intergenic 30.0%
!! TTGAATTCAGTCATTTTGTC+TGG + chr7_4:58466601-58466620 None:intergenic 30.0%
! ACCAAGATTGATAGTTTCTA+GGG + chr7_4:58466795-58466814 None:intergenic 30.0%
! AACCAAGATTGATAGTTTCT+AGG + chr7_4:58466796-58466815 None:intergenic 30.0%
!!! ATCAATCTTGGTTTTAATCC+AGG - chr7_4:58466803-58466822 Msa1166340:intron 30.0%
CCTACAAATTAAACCAAGAT+GGG + chr7_4:58466843-58466862 None:intergenic 30.0%
ACCTACAAATTAAACCAAGA+TGG + chr7_4:58466844-58466863 None:intergenic 30.0%
!! TCTTGGTTTAATTTGTAGGT+TGG - chr7_4:58466844-58466863 Msa1166340:intron 30.0%
! TGATTTAGTGTTTGGTTCAA+AGG - chr7_4:58466883-58466902 Msa1166340:intron 30.0%
GATATAACCCTTTACTTGTT+TGG - chr7_4:58466910-58466929 Msa1166340:intron 30.0%
TTGCAAACCAAACAAGTAAA+GGG + chr7_4:58466920-58466939 None:intergenic 30.0%
CTGAAGTTCTTAAGTTCTTA+TGG - chr7_4:58467139-58467158 Msa1166340:exon 30.0%
AAAAGCTAAGAAAAAGCAAG+TGG - chr7_4:58467290-58467309 Msa1166340:intron 30.0%
AAAGAGCAATATGGACAATT+TGG - chr7_4:58467404-58467423 Msa1166340:intron 30.0%
TTGAAAATGAGAAACTCGAA+AGG - chr7_4:58467580-58467599 Msa1166340:intron 30.0%
TTGTCAGAGAATTTGATTGA+AGG - chr7_4:58467786-58467805 Msa1166340:intron 30.0%
TATAAATCAGCTGATGGTAT+TGG - chr7_4:58467975-58467994 Msa1166340:intron 30.0%
CATTTGATCATATTGGGATT+GGG + chr7_4:58468076-58468095 None:intergenic 30.0%
CAATCCCAATATGATCAAAT+GGG - chr7_4:58468075-58468094 Msa1166340:intron 30.0%
TTGTCCCATTTGATCATATT+GGG + chr7_4:58468082-58468101 None:intergenic 30.0%
TTTGTCCCATTTGATCATAT+TGG + chr7_4:58468083-58468102 None:intergenic 30.0%
AATGGGACAAATATATCACA+TGG - chr7_4:58468092-58468111 Msa1166340:intron 30.0%
!!! CTGCTGTCTTTTGTTGTTTT+AGG + chr7_4:58463395-58463414 None:intergenic 35.0%
! CAGAACAGTCCTCATATTTT+TGG - chr7_4:58463651-58463670 Msa1166340:three_prime_UTR 35.0%
!!! ACAGTCCTCATATTTTTGGA+TGG - chr7_4:58463655-58463674 Msa1166340:three_prime_UTR 35.0%
!!! CAGTCCTCATATTTTTGGAT+GGG - chr7_4:58463656-58463675 Msa1166340:three_prime_UTR 35.0%
!!! AGTCCTCATATTTTTGGATG+GGG - chr7_4:58463657-58463676 Msa1166340:three_prime_UTR 35.0%
!!! TGCACTGATTAGTAGGATTT+TGG - chr7_4:58463680-58463699 Msa1166340:CDS 35.0%
!! ACTTAATTTGTGGATGGTTC+AGG + chr7_4:58463745-58463764 None:intergenic 35.0%
!! GAAGGAACTTAATTTGTGGA+TGG + chr7_4:58463751-58463770 None:intergenic 35.0%
! CCAAGAAGGAACTTAATTTG+TGG + chr7_4:58463755-58463774 None:intergenic 35.0%
CCACAAATTAAGTTCCTTCT+TGG - chr7_4:58463752-58463771 Msa1166340:CDS 35.0%
TATTGTTTGTGTCTGCATGT+CGG + chr7_4:58463898-58463917 None:intergenic 35.0%
!! AGGCCATAAGTTGTTTTCAT+AGG - chr7_4:58463990-58464009 Msa1166340:CDS 35.0%
!! GTTGTTTTCATAGGCTATCT+TGG - chr7_4:58463999-58464018 Msa1166340:CDS 35.0%
!! GACTCAAATAGTCTTGTAAG+TGG - chr7_4:58464063-58464082 Msa1166340:CDS 35.0%
! AGTCTTGTAAGTGGTTATGT+CGG - chr7_4:58464072-58464091 Msa1166340:CDS 35.0%
TCAAATAAGCCAAACCAGAT+AGG - chr7_4:58464104-58464123 Msa1166340:CDS 35.0%
ATGAACATTCTAGACCTACA+TGG + chr7_4:58464156-58464175 None:intergenic 35.0%
GTGTCCTACAACCTTAATAT+GGG + chr7_4:58464318-58464337 None:intergenic 35.0%
AGTGTCCTACAACCTTAATA+TGG + chr7_4:58464319-58464338 None:intergenic 35.0%
AGACAAGACATCTGAAAACA+AGG - chr7_4:58464664-58464683 Msa1166340:intron 35.0%
CACATCCTAACGTATGTTAA+AGG + chr7_4:58464881-58464900 None:intergenic 35.0%
CTTTAACATACGTTAGGATG+TGG - chr7_4:58464879-58464898 Msa1166340:intron 35.0%
TCTGTTGATCAAATACGTAG+GGG - chr7_4:58464982-58465001 Msa1166340:intron 35.0%
ATCAAAGTATGTTGCCATCT+AGG - chr7_4:58465083-58465102 Msa1166340:intron 35.0%
!!! GAAGGTGGTTTTGAAAATGA+GGG + chr7_4:58465127-58465146 None:intergenic 35.0%
!!! AGAAGGTGGTTTTGAAAATG+AGG + chr7_4:58465128-58465147 None:intergenic 35.0%
TGATATAAATACGCAGAAGG+TGG + chr7_4:58465142-58465161 None:intergenic 35.0%
AATTGGTATTCTAGGCTTGA+GGG + chr7_4:58465168-58465187 None:intergenic 35.0%
ATCTCAAACATACTCATTGC+GGG + chr7_4:58465435-58465454 None:intergenic 35.0%
! GTAGTAGGCATAGAAAGTAT+TGG + chr7_4:58465751-58465770 None:intergenic 35.0%
GAATAAATAGAGGATAGAGG+AGG + chr7_4:58465774-58465793 None:intergenic 35.0%
TGGATAGTAAGTTAGTTGGA+AGG + chr7_4:58465808-58465827 None:intergenic 35.0%
TTCCAACTAACTTACTATCC+AGG - chr7_4:58465807-58465826 Msa1166340:intron 35.0%
AACCTGGATAGTAAGTTAGT+TGG + chr7_4:58465812-58465831 None:intergenic 35.0%
!! AGATAGCCTTATGTAAGCAT+TGG + chr7_4:58465959-58465978 None:intergenic 35.0%
CAATATCCGTATCCAACAAA+GGG + chr7_4:58466004-58466023 None:intergenic 35.0%
AAAATTTAGAGGAGCAACCT+AGG + chr7_4:58466242-58466261 None:intergenic 35.0%
!! CATTGATTCATTTGGCTTGA+TGG - chr7_4:58466336-58466355 Msa1166340:intron 35.0%
!!! CACTGTTGGCATTTGTTTTT+TGG - chr7_4:58466391-58466410 Msa1166340:intron 35.0%
AGTCAATTCCAGGATTAATG+TGG + chr7_4:58466424-58466443 None:intergenic 35.0%
CATTAATCCTGGAATTGACT+AGG - chr7_4:58466424-58466443 Msa1166340:intron 35.0%
TTAAACTCCTAGTCAATTCC+AGG + chr7_4:58466434-58466453 None:intergenic 35.0%
! CATCATTTTGTGTGAAACTC+TGG - chr7_4:58466491-58466510 Msa1166340:intron 35.0%
! ATTTTGTGTGAAACTCTGGT+AGG - chr7_4:58466495-58466514 Msa1166340:intron 35.0%
! CTTATATTGGTGATTCCATG+TGG + chr7_4:58466542-58466561 None:intergenic 35.0%
CACATGGAATCACCAATATA+AGG - chr7_4:58466540-58466559 Msa1166340:intron 35.0%
CGCTTCAATCATCCTTATAT+TGG + chr7_4:58466555-58466574 None:intergenic 35.0%
TTCATGACTTCATTCATGCT+GGG + chr7_4:58466753-58466772 None:intergenic 35.0%
ACCCTAGAAACTATCAATCT+TGG - chr7_4:58466791-58466810 Msa1166340:intron 35.0%
!!! TCTTGGTTTTAATCCAGGTT+TGG - chr7_4:58466808-58466827 Msa1166340:intron 35.0%
!! CCCATCTTGGTTTAATTTGT+AGG - chr7_4:58466840-58466859 Msa1166340:intron 35.0%
! TTTAGTGTTTGGTTCAAAGG+AGG - chr7_4:58466886-58466905 Msa1166340:intron 35.0%
! TTAGTGTTTGGTTCAAAGGA+GGG - chr7_4:58466887-58466906 Msa1166340:intron 35.0%
CTTGCAAACCAAACAAGTAA+AGG + chr7_4:58466921-58466940 None:intergenic 35.0%
!! TTGTTTGGTTTGCAAGAAGA+GGG - chr7_4:58466925-58466944 Msa1166340:intron 35.0%
CAGAAGTCTATGTAAGATCA+TGG + chr7_4:58467097-58467116 None:intergenic 35.0%
TTCTGAATTTGACAAGCATG+TGG - chr7_4:58467112-58467131 Msa1166340:CDS 35.0%
TCTGAATTTGACAAGCATGT+GGG - chr7_4:58467113-58467132 Msa1166340:CDS 35.0%
ATGAAAAAACAAGCAGCTAG+AGG - chr7_4:58467252-58467271 Msa1166340:intron 35.0%
CGGAAATGAAAAGAGCAATA+TGG - chr7_4:58467395-58467414 Msa1166340:intron 35.0%
! CAATATGGACAATTTGGTGA+AGG - chr7_4:58467410-58467429 Msa1166340:intron 35.0%
TAGTCAACCTGAGAATACAA+AGG - chr7_4:58467455-58467474 Msa1166340:intron 35.0%
TGACATTATAAGTGATCGCA+CGG - chr7_4:58467557-58467576 Msa1166340:intron 35.0%
TGTGTGAAATAAAGCCTGAT+GGG - chr7_4:58467628-58467647 Msa1166340:intron 35.0%
CGAAGTTGTTGGTATGTATA+TGG + chr7_4:58467711-58467730 None:intergenic 35.0%
ATACCAACAACTTCGAGAAA+TGG - chr7_4:58467716-58467735 Msa1166340:intron 35.0%
! TTACATGAGGAAGCATACAT+CGG - chr7_4:58467746-58467765 Msa1166340:intron 35.0%
! AAGGAGTATAAATCAGCTGA+TGG - chr7_4:58467969-58467988 Msa1166340:intron 35.0%
! ATGGTAAGAAAGCATGATAC+TGG + chr7_4:58468012-58468031 None:intergenic 35.0%
! TCTTACCATATGCATGCTTT+TGG - chr7_4:58468023-58468042 Msa1166340:intron 35.0%
! CTTACCATATGCATGCTTTT+GGG - chr7_4:58468024-58468043 Msa1166340:intron 35.0%
TGGTGAGCATTATAATTCTG+TGG - chr7_4:58468049-58468068 Msa1166340:intron 35.0%
CCATTTGATCATATTGGGAT+TGG + chr7_4:58468077-58468096 None:intergenic 35.0%
CCAATCCCAATATGATCAAA+TGG - chr7_4:58468074-58468093 Msa1166340:intron 35.0%
!! CGTCAGTCACAAACTTTTTC+AGG - chr7_4:58463471-58463490 Msa1166340:three_prime_UTR 40.0%
AATATGAGGACTGTTCTGCT+TGG + chr7_4:58463649-58463668 None:intergenic 40.0%
ATAAAGCTGTTCACCCAAGA+AGG + chr7_4:58463769-58463788 None:intergenic 40.0%
TTCGCATAAGCTATGTAGCA+CGG - chr7_4:58463863-58463882 Msa1166340:CDS 40.0%
!!! TGTTAGTTTTAGGGCCTATC+TGG + chr7_4:58464121-58464140 None:intergenic 40.0%
CACAAATAGCTAAGCCATGT+AGG - chr7_4:58464139-58464158 Msa1166340:CDS 40.0%
CTGTCTTCTGTCCCATATTA+AGG - chr7_4:58464304-58464323 Msa1166340:CDS 40.0%
CTGTCCCATATTAAGGTTGT+AGG - chr7_4:58464311-58464330 Msa1166340:CDS 40.0%
!!! TTTTAGGGTTGTTCCAATGG+AGG - chr7_4:58464601-58464620 Msa1166340:CDS 40.0%
TTGTACCTCCTCAACTTCTT+GGG + chr7_4:58464630-58464649 None:intergenic 40.0%
CCTCAGTACTCATAGTTTCA+TGG + chr7_4:58464737-58464756 None:intergenic 40.0%
! CCATGAAACTATGAGTACTG+AGG - chr7_4:58464734-58464753 Msa1166340:intron 40.0%
GTGCATGATTTCTGTGTTCT+TGG + chr7_4:58464791-58464810 None:intergenic 40.0%
AGTTAAGGTAGAGTCGTAGT+TGG - chr7_4:58464826-58464845 Msa1166340:intron 40.0%
AGTTCTATCAGATGCAAGAG+TGG - chr7_4:58465044-58465063 Msa1166340:intron 40.0%
AGAGTGGTCGTGTACTTATA+TGG - chr7_4:58465060-58465079 Msa1166340:intron 40.0%
! TTGCCATCTAGGTGTTTCTA+GGG - chr7_4:58465094-58465113 Msa1166340:intron 40.0%
GAATTGGTATTCTAGGCTTG+AGG + chr7_4:58465169-58465188 None:intergenic 40.0%
TAGTTGGAAGGTGAGTGAAA+TGG + chr7_4:58465796-58465815 None:intergenic 40.0%
CTCTTGCCAATGCTTACATA+AGG - chr7_4:58465950-58465969 Msa1166340:intron 40.0%
AACAAAGGGTCAGACATGTA+GGG + chr7_4:58465990-58466009 None:intergenic 40.0%
GCAATATCCGTATCCAACAA+AGG + chr7_4:58466005-58466024 None:intergenic 40.0%
! GTTGATCAAGAGCTTTTCCT+AGG - chr7_4:58466222-58466241 Msa1166340:intron 40.0%
AACAAATGCCAACAGTGCTA+AGG + chr7_4:58466388-58466407 None:intergenic 40.0%
GACTCTTTCCACATTAATCC+TGG - chr7_4:58466413-58466432 Msa1166340:intron 40.0%
GACTAGGAGTTTAAGTCTCT+AGG - chr7_4:58466440-58466459 Msa1166340:intron 40.0%
ATTGAAGCGGTTTGCAACAA+TGG - chr7_4:58466566-58466585 Msa1166340:intron 40.0%
TTGAAGCGGTTTGCAACAAT+GGG - chr7_4:58466567-58466586 Msa1166340:intron 40.0%
GCAACAGCAGAATGATGATA+AGG - chr7_4:58466643-58466662 Msa1166340:intron 40.0%
AGGACAACAAATGTTAGACG+CGG + chr7_4:58466711-58466730 None:intergenic 40.0%
TCATTCATGCTGGGAAATGT+GGG + chr7_4:58466744-58466763 None:intergenic 40.0%
TTCATTCATGCTGGGAAATG+TGG + chr7_4:58466745-58466764 None:intergenic 40.0%
GTTCATGACTTCATTCATGC+TGG + chr7_4:58466754-58466773 None:intergenic 40.0%
GCATGAATGAAGTCATGAAC+CGG - chr7_4:58466754-58466773 Msa1166340:intron 40.0%
!!! AGGGTTTTGTTCATGCTTTC+CGG + chr7_4:58466776-58466795 None:intergenic 40.0%
! TAGTGTTTGGTTCAAAGGAG+GGG - chr7_4:58466888-58466907 Msa1166340:intron 40.0%
!! CTTGTTTGGTTTGCAAGAAG+AGG - chr7_4:58466924-58466943 Msa1166340:intron 40.0%
GCAATGCATATTTGTCCACA+TGG - chr7_4:58467178-58467197 Msa1166340:intron 40.0%
CCTGAAAATACATGTCCATG+TGG + chr7_4:58467196-58467215 None:intergenic 40.0%
! CCACATGGACATGTATTTTC+AGG - chr7_4:58467193-58467212 Msa1166340:intron 40.0%
AGCTAAGAAAAAGCAAGTGG+AGG - chr7_4:58467293-58467312 Msa1166340:intron 40.0%
TCAAATCTCTGCTAAGCTCA+AGG - chr7_4:58467326-58467345 Msa1166340:intron 40.0%
TTAGGCTATAGCAGTGGTAA+CGG - chr7_4:58467375-58467394 Msa1166340:intron 40.0%
ACTAACAGATACTCCAGCTA+TGG + chr7_4:58467436-58467455 None:intergenic 40.0%
TTGCTGACCTTTGTATTCTC+AGG + chr7_4:58467465-58467484 None:intergenic 40.0%
TGAGAATACAAAGGTCAGCA+AGG - chr7_4:58467464-58467483 Msa1166340:intron 40.0%
TAATGTCATTCTGCTCTGCT+TGG + chr7_4:58467545-58467564 None:intergenic 40.0%
GTGTGTGAAATAAAGCCTGA+TGG - chr7_4:58467627-58467646 Msa1166340:intron 40.0%
GATTCTCAACAGCTCTGTAA+AGG + chr7_4:58467659-58467678 None:intergenic 40.0%
TCTCTGACAAACAAAATGGG+AGG + chr7_4:58467776-58467795 None:intergenic 40.0%
TGTTGAGCAAAACGCTACAT+GGG + chr7_4:58468131-58468150 None:intergenic 40.0%
GCACCCCATCCAAAAATATG+AGG + chr7_4:58463663-58463682 None:intergenic 45.0%
ATCTGTCGACACCTAATCTG+CGG - chr7_4:58463951-58463970 Msa1166340:CDS 45.0%
! ACACCTAATCTGCGGAGTTT+TGG - chr7_4:58463959-58463978 Msa1166340:CDS 45.0%
CTTGTAAGTGGTTATGTCGG+TGG - chr7_4:58464075-58464094 Msa1166340:CDS 45.0%
!!! GTTTTAGGGCCTATCTGGTT+TGG + chr7_4:58464116-58464135 None:intergenic 45.0%
ACTTCTTGGGTATCCTCCAT+TGG + chr7_4:58464617-58464636 None:intergenic 45.0%
CTTGTACCTCCTCAACTTCT+TGG + chr7_4:58464631-58464650 None:intergenic 45.0%
ATGAAATTCTTGCACGCCAC+AGG - chr7_4:58464702-58464721 Msa1166340:intron 45.0%
TTCATGGAGTGAGTTACCTG+TGG + chr7_4:58464721-58464740 None:intergenic 45.0%
GTTGCCATCTAGGTGTTTCT+AGG - chr7_4:58465093-58465112 Msa1166340:intron 45.0%
!! TGCCATCTAGGTGTTTCTAG+GGG - chr7_4:58465095-58465114 Msa1166340:intron 45.0%
ATCCCCTAGAAACACCTAGA+TGG + chr7_4:58465100-58465119 None:intergenic 45.0%
TGGAGTTGTTGCCATGTGAT+AGG - chr7_4:58465309-58465328 Msa1166340:intron 45.0%
TCCACTTCTGTCCTATCACA+TGG + chr7_4:58465323-58465342 None:intergenic 45.0%
TGCGGGACTAAAGGAATTAC+AGG + chr7_4:58465418-58465437 None:intergenic 45.0%
CATACTCATTGCGGGACTAA+AGG + chr7_4:58465427-58465446 None:intergenic 45.0%
CCTCTTTGTCACAAGGTGAT+AGG + chr7_4:58465904-58465923 None:intergenic 45.0%
CCTATCACCTTGTGACAAAG+AGG - chr7_4:58465901-58465920 Msa1166340:intron 45.0%
GAGGTCGCATGTTAGAATCT+CGG - chr7_4:58465920-58465939 Msa1166340:intron 45.0%
CAACAAAGGGTCAGACATGT+AGG + chr7_4:58465991-58466010 None:intergenic 45.0%
CTACATGTCTGACCCTTTGT+TGG - chr7_4:58465989-58466008 Msa1166340:intron 45.0%
GTCTGACCCTTTGTTGGATA+CGG - chr7_4:58465995-58466014 Msa1166340:intron 45.0%
GTTGGATACGGATATTGCGA+TGG - chr7_4:58466007-58466026 Msa1166340:intron 45.0%
AACAGTGCTAAGGCAAAAGG+AGG + chr7_4:58466378-58466397 None:intergenic 45.0%
! TCCTTTTGCCTTAGCACTGT+TGG - chr7_4:58466377-58466396 Msa1166340:intron 45.0%
AACAAATGTTAGACGCGGCT+GGG + chr7_4:58466706-58466725 None:intergenic 45.0%
CATTCATGCTGGGAAATGTG+GGG + chr7_4:58466743-58466762 None:intergenic 45.0%
TTGGTATGCTGAACCCATCT+TGG - chr7_4:58466827-58466846 Msa1166340:intron 45.0%
GAAAAAGCAAGTGGAGGAAG+AGG - chr7_4:58467299-58467318 Msa1166340:intron 45.0%
GCCAAAGAACTGTCTGCTTT+AGG - chr7_4:58467357-58467376 Msa1166340:intron 45.0%
GCCTAAAGCAGACAGTTCTT+TGG + chr7_4:58467361-58467380 None:intergenic 45.0%
! TCTGCTTTAGGCTATAGCAG+TGG - chr7_4:58467369-58467388 Msa1166340:intron 45.0%
! AATTTGGTGAAGGCCATAGC+TGG - chr7_4:58467420-58467439 Msa1166340:intron 45.0%
! TCTTTTGTCACGCCTCTGTT+TGG + chr7_4:58467490-58467509 None:intergenic 45.0%
GAAAGGAAGTTGAAGCCTCT+TGG - chr7_4:58467597-58467616 Msa1166340:intron 45.0%
TCACACACAGTCAAACCAAG+AGG + chr7_4:58467615-58467634 None:intergenic 45.0%
CAGAGCTGTTGAGAATCAGT+TGG - chr7_4:58467662-58467681 Msa1166340:intron 45.0%
! AGATTTTCCCCCAAAGAGGT+GGG + chr7_4:58467688-58467707 None:intergenic 45.0%
! ATGGAGATTTTCCCCCAAAG+AGG + chr7_4:58467692-58467711 None:intergenic 45.0%
! CTGCCATTTCTCGAAGTTGT+TGG + chr7_4:58467722-58467741 None:intergenic 45.0%
AAATGGCAGCTGCTTACATG+AGG - chr7_4:58467733-58467752 Msa1166340:intron 45.0%
! CAAGCCCAAAAGCATGCATA+TGG + chr7_4:58468031-58468050 None:intergenic 45.0%
! CATATGCATGCTTTTGGGCT+TGG - chr7_4:58468029-58468048 Msa1166340:intron 45.0%
CTGTTGAGCAAAACGCTACA+TGG + chr7_4:58468132-58468151 None:intergenic 45.0%
TTAACCTTCAGCCATACTCC+TGG + chr7_4:58468155-58468174 None:intergenic 45.0%
!!! TATTTTATTTCTTTATTTTT+AGG - chr7_4:58464585-58464604 Msa1166340:CDS 5.0%
!!! ATTTTATTTCTTTATTTTTA+GGG - chr7_4:58464586-58464605 Msa1166340:CDS 5.0%
!!! TTTAAAAAACAATAAATTTT+GGG + chr7_4:58465571-58465590 None:intergenic 5.0%
!!! TTTTAAAAAACAATAAATTT+TGG + chr7_4:58465572-58465591 None:intergenic 5.0%
!!! TTTTTTTTTTTTAAAAAAAG+TGG - chr7_4:58465625-58465644 Msa1166340:intron 5.0%
GTGCTGCAACTCCAGTTTGA+CGG + chr7_4:58463420-58463439 None:intergenic 50.0%
!! GATGGGGTGCACTGATTAGT+AGG - chr7_4:58463673-58463692 Msa1166340:exon 50.0%
GCACCAAAACTCCGCAGATT+AGG + chr7_4:58463965-58463984 None:intergenic 50.0%
!!! GCGGAGTTTTGGTGCTTCAT+AGG - chr7_4:58463970-58463989 Msa1166340:CDS 50.0%
GGAGGATACCCAAGAAGTTG+AGG - chr7_4:58464619-58464638 Msa1166340:CDS 50.0%
GGATACCCAAGAAGTTGAGG+AGG - chr7_4:58464622-58464641 Msa1166340:CDS 50.0%
GCCATGTGATAGGACAGAAG+TGG - chr7_4:58465319-58465338 Msa1166340:intron 50.0%
AGAGGATAGAGGAGGGTAGT+AGG + chr7_4:58465766-58465785 None:intergenic 50.0%
!! AGTCAGTTGCTGACTCACTC+AGG - chr7_4:58465848-58465867 Msa1166340:intron 50.0%
CATGCGACCTCTTTGTCACA+AGG + chr7_4:58465911-58465930 None:intergenic 50.0%
GGATACGGATATTGCGATGG+TGG - chr7_4:58466010-58466029 Msa1166340:intron 50.0%
CAAAAGGAGGAAGGAGGAAG+GGG + chr7_4:58466365-58466384 None:intergenic 50.0%
GCAAAAGGAGGAAGGAGGAA+GGG + chr7_4:58466366-58466385 None:intergenic 50.0%
CTAAGGCAAAAGGAGGAAGG+AGG + chr7_4:58466371-58466390 None:intergenic 50.0%
GTGCTAAGGCAAAAGGAGGA+AGG + chr7_4:58466374-58466393 None:intergenic 50.0%
GCCAACAGTGCTAAGGCAAA+AGG + chr7_4:58466381-58466400 None:intergenic 50.0%
CAACAAATGTTAGACGCGGC+TGG + chr7_4:58466707-58466726 None:intergenic 50.0%
GAAATGTGGGGTTGAGACTC+AGG + chr7_4:58466731-58466750 None:intergenic 50.0%
TGGGTTCAGCATACCAAACC+TGG + chr7_4:58466824-58466843 None:intergenic 50.0%
ACAAGCAGCTAGAGGTAGCA+AGG - chr7_4:58467260-58467279 Msa1166340:intron 50.0%
TGCTAAGCTCAAGGAGAAGC+AGG - chr7_4:58467335-58467354 Msa1166340:intron 50.0%
AATCAGTTGGCCCACCTCTT+TGG - chr7_4:58467675-58467694 Msa1166340:intron 50.0%
ATCAGTTGGCCCACCTCTTT+GGG - chr7_4:58467676-58467695 Msa1166340:intron 50.0%
! GAGATTTTCCCCCAAAGAGG+TGG + chr7_4:58467689-58467708 None:intergenic 50.0%
CTTCTTCAGGCAGTGAGTCA+AGG + chr7_4:58467904-58467923 None:intergenic 50.0%
TCCTTCCCTGATGTGGAGAT+GGG - chr7_4:58467945-58467964 Msa1166340:intron 50.0%
!! GCTGATGGTATTGGTTCGTC+TGG - chr7_4:58467984-58468003 Msa1166340:intron 50.0%
! TAGCGTTTTGCTCAACAGCC+AGG - chr7_4:58468134-58468153 Msa1166340:intron 50.0%
TTGCTCAACAGCCAGGAGTA+TGG - chr7_4:58468141-58468160 Msa1166340:intron 50.0%
AGACAGCAGCTCCGTCAAAC+TGG - chr7_4:58463406-58463425 Msa1166340:three_prime_UTR 55.0%
GAGTTGCAGCACTCACTAGC+CGG - chr7_4:58463428-58463447 Msa1166340:three_prime_UTR 55.0%
AGTTGCAGCACTCACTAGCC+GGG - chr7_4:58463429-58463448 Msa1166340:three_prime_UTR 55.0%
GGCAAAAGGAGGAAGGAGGA+AGG + chr7_4:58466367-58466386 None:intergenic 55.0%
AGGTCAGCAAGGCCAAACAG+AGG - chr7_4:58467475-58467494 Msa1166340:intron 55.0%
CTGTAAAGGCAGTGCCCATC+AGG + chr7_4:58467645-58467664 None:intergenic 55.0%
TCAGTTGGCCCACCTCTTTG+GGG - chr7_4:58467677-58467696 Msa1166340:intron 55.0%
TTCAGGGTCCTTCCCTGATG+TGG - chr7_4:58467938-58467957 Msa1166340:intron 55.0%
GTCCTTCCCTGATGTGGAGA+TGG - chr7_4:58467944-58467963 Msa1166340:intron 55.0%
CCTTCCCTGATGTGGAGATG+GGG - chr7_4:58467946-58467965 Msa1166340:intron 55.0%
CCTTCCCCATCTCCACATCA+GGG + chr7_4:58467953-58467972 None:intergenic 55.0%
TCCTTCCCCATCTCCACATC+AGG + chr7_4:58467954-58467973 None:intergenic 55.0%
! ACAGCCAGGAGTATGGCTGA+AGG - chr7_4:58468148-58468167 Msa1166340:intron 55.0%
ACTCACTAGCCGGGTAACGC+TGG - chr7_4:58463438-58463457 Msa1166340:three_prime_UTR 60.0%
CAGTTGGCCCACCTCTTTGG+GGG - chr7_4:58467678-58467697 Msa1166340:intron 60.0%
CCCCATCTCCACATCAGGGA+AGG + chr7_4:58467949-58467968 None:intergenic 60.0%
CCCTGATGTGGAGATGGGGA+AGG - chr7_4:58467950-58467969 Msa1166340:intron 60.0%
CACTAGCCGGGTAACGCTGG+CGG - chr7_4:58463441-58463460 Msa1166340:three_prime_UTR 65.0%
GCAAGTCCGCCAGCGTTACC+CGG + chr7_4:58463450-58463469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58463378 58468387 58463378 ID=Msa1166340;Name=Msa1166340
chr7_4 mRNA 58463378 58468387 58463378 ID=Msa1166340-mRNA-1;Parent=Msa1166340;Name=Msa1166340-mRNA-1;_AED=0.25;_eAED=0.25;_QI=125|1|1|1|0.5|0.66|3|299|368
chr7_4 exon 58463378 58464676 58463378 ID=Msa1166340-mRNA-1:exon:17929;Parent=Msa1166340-mRNA-1
chr7_4 exon 58467042 58467158 58467042 ID=Msa1166340-mRNA-1:exon:17928;Parent=Msa1166340-mRNA-1
chr7_4 exon 58468273 58468387 58468273 ID=Msa1166340-mRNA-1:exon:17927;Parent=Msa1166340-mRNA-1
chr7_4 five_prime_UTR 58468273 58468387 58468273 ID=Msa1166340-mRNA-1:five_prime_utr;Parent=Msa1166340-mRNA-1
chr7_4 five_prime_UTR 58467149 58467158 58467149 ID=Msa1166340-mRNA-1:five_prime_utr;Parent=Msa1166340-mRNA-1
chr7_4 CDS 58467042 58467148 58467042 ID=Msa1166340-mRNA-1:cds;Parent=Msa1166340-mRNA-1
chr7_4 CDS 58463677 58464676 58463677 ID=Msa1166340-mRNA-1:cds;Parent=Msa1166340-mRNA-1
chr7_4 three_prime_UTR 58463378 58463676 58463378 ID=Msa1166340-mRNA-1:three_prime_utr;Parent=Msa1166340-mRNA-1
Gene Sequence

>Msa1166340

ATGGAGGATACCCAAGAAGTTGAGGAGGTACAAGAAGAAGTGATTTCAGACAAGACATCTGAAAACAAGGAAGAAGAAACTCGCGATGAAATTCTTGCACGCCACAGATATTCCATGATCTTACATAGACTTCTGAATTTGACAAGCATGTGGGCTACTGAAGTTCTTAAGTTCTTATGGTTCTTATGGTTCTCATGCAATGCATATTTGTCCACATGGACATGTATTTTCAGGAAAGAGATATCACAACTGCAGAAAAAAGAAGTTGAAATGAAAAAACAAGCAGCTAGAGGTAGCAAGGCTGAGCAAAAAGCTAAGAAAAAGCAAGTGGAGGAAGAGGTTTCTCAAATCTCTGCTAAGCTCAAGGAGAAGCAGGCCAAAGAACTGTCTGCTTTAGGCTATAGCAGTGGTAACGGAAATGAAAAGAGCAATATGGACAATTTGGTGAAGGCCATAGCTGGAGTATCTGTTAGTAGTCAACCTGAGAATACAAAGGTCAGCAAGGCCAAACAGAGGCGTGACAAAAGAGCTCAACAAGAAGCAGAGAGAGAACAGAGAATCCAAGCAGAGCAGAATGACATTATAAGTGATCGCACGGTTGAAAATGAGAAACTCGAAAGGAAGTTGAAGCCTCTTGGTTTGACTGTGTGTGAAATAAAGCCTGATGGGCACTGCCTTTACAGAGCTGTTGAGAATCAGTTGGCCCACCTCTTTGGGGGAAAATCTCCATATACATACCAACAACTTCGAGAAATGGCAGCTGCTTACATGAGGAAGCATACATCGGATTTCCTCCCATTTTGTTTGTCAGAGAATTTGATTGAAGGTGATTCTGATGAATCGATTGCTCAAAAGTTTGAAAATTATTGCAAAGAAGTAGAATCCACAGCAATATGGGGAGGACAACTAGAGCTTGGTGCCTTGACTCACTGCCTGAAGAAGCATATTATGATATTTTCAGGGTCCTTCCCTGATGTGGAGATGGGGAAGGAGTATAAATCAGCTGATGGTATTGGTTCGTCTGGTTCCAGTATCATGCTTTCTTACCATATGCATGCTTTTGGGCTTGGTGAGCATTATAATTCTGTGGTCCCAATCCCAATATGA

Protein sequence

>Msa1166340

MEDTQEVEEVQEEVISDKTSENKEEETRDEILARHRYSMILHRLLNLTSMWATEVLKFLWFLWFSCNAYLSTWTCIFRKEISQLQKKEVEMKKQAARGSKAEQKAKKKQVEEEVSQISAKLKEKQAKELSALGYSSGNGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAEREQRIQAEQNDIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPYTYQQLREMAAAYMRKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVVPIPI*