AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1047400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1047400 MtrunA17_Chr7g0215451 97.854 233 5 0 1 233 114 346 1.22e-168 468
Msa1047400 MtrunA17_Chr6g0460121 73.913 230 60 0 1 230 76 305 3.58e-126 359
Msa1047400 MtrunA17_Chr6g0457581 73.478 230 61 0 1 230 113 342 2.28e-125 358
Msa1047400 MtrunA17_Chr1g0209741 61.161 224 87 0 1 224 153 376 3.88e-98 291
Msa1047400 MtrunA17_Chr5g0423541 60.619 226 89 0 1 226 167 392 6.79e-98 290
Msa1047400 MtrunA17_Chr1g0195501 50.220 227 113 0 1 227 67 293 7.63e-79 239
Msa1047400 MtrunA17_Chr6g0484431 66.061 165 55 1 1 164 117 281 5.86e-78 236
Msa1047400 MtrunA17_Chr7g0269371 48.230 226 117 0 1 226 66 291 8.31e-77 235
Msa1047400 MtrunA17_Chr1g0212901 47.345 226 119 0 1 226 69 294 5.54e-68 211
Msa1047400 MtrunA17_Chr4g0047891 42.601 223 128 0 1 223 99 321 1.15e-62 198
Msa1047400 MtrunA17_Chr1g0199771 36.957 230 141 4 1 228 91 318 1.98e-49 164
Msa1047400 MtrunA17_Chr4g0071671 36.910 233 140 3 5 233 93 322 2.80e-48 161
Msa1047400 MtrunA17_Chr6g0479331 35.683 227 132 8 1 223 172 388 1.05e-27 108
Msa1047400 MtrunA17_Chr3g0140391 33.624 229 138 6 1 225 153 371 4.36e-27 107
Msa1047400 MtrunA17_Chr6g0484421 70.968 62 18 0 165 226 1 62 1.33e-25 95.1
Msa1047400 MtrunA17_Chr1g0209761 56.061 66 29 0 158 223 12 77 1.88e-17 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1047400 AT5G16120.3 75.431 232 57 0 1 232 115 346 2.70e-129 369
Msa1047400 AT5G16120.1 75.431 232 57 0 1 232 115 346 2.70e-129 369
Msa1047400 AT5G16120.4 75.431 232 57 0 1 232 147 378 8.44e-129 369
Msa1047400 AT5G16120.2 75.431 232 57 0 1 232 133 364 8.54e-129 369
Msa1047400 AT1G77420.1 56.951 223 96 0 1 223 154 376 2.24e-90 271
Msa1047400 AT3G62860.2 48.879 223 114 0 1 223 24 246 6.90e-77 234
Msa1047400 AT3G62860.1 48.879 223 114 0 1 223 67 289 2.43e-76 234
Msa1047400 AT2G47630.2 50.224 223 111 0 1 223 24 246 1.20e-75 231
Msa1047400 AT2G47630.3 50.224 223 111 0 1 223 44 266 1.77e-75 231
Msa1047400 AT2G47630.1 50.224 223 111 0 1 223 69 291 4.16e-75 231
Msa1047400 AT2G39420.1 50.673 223 110 0 1 223 70 292 2.27e-73 226
Msa1047400 AT1G11090.1 46.667 225 120 0 1 225 90 314 1.45e-71 221
Msa1047400 AT2G39400.1 48.230 226 117 0 1 226 64 289 2.99e-67 210
Msa1047400 AT2G39410.2 47.345 226 119 0 1 226 70 295 1.03e-66 209
Msa1047400 AT3G55180.1 46.018 226 122 0 1 226 65 290 2.07e-64 202
Msa1047400 AT3G55190.1 43.049 223 126 1 1 222 70 292 2.84e-57 184
Msa1047400 AT5G14980.1 35.683 227 144 2 1 226 91 316 6.18e-52 171
Msa1047400 AT5G19290.1 34.978 223 143 2 1 222 92 313 3.99e-50 166
Msa1047400 AT1G52760.1 35.897 234 143 3 2 231 99 329 3.96e-46 156
Msa1047400 AT2G39400.2 44.848 165 91 0 1 165 64 228 6.72e-40 138
Msa1047400 AT1G73480.1 35.088 228 136 6 1 225 244 462 6.49e-30 116
Msa1047400 AT5G11650.1 33.480 227 135 8 1 222 160 375 2.30e-25 102
Msa1047400 AT1G18360.1 32.599 227 139 6 1 223 163 379 2.36e-25 102

Find 88 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGATCACATACTCTTTA+AGG 0.117185 7_2:+8294399 Msa1047400:five_prime_UTR
CTTGGAAGAGATTGCAATTC+TGG 0.138099 7_2:-8298129 None:intergenic
ATGAATATTGAGATTGTTAT+TGG 0.139036 7_2:+8299606 Msa1047400:three_prime_UTR
CAATGAATTGCATAAGATTT+TGG 0.153787 7_2:+8294309 Msa1047400:five_prime_UTR
ACAAGCTCGTGAAGCCTTTA+AGG 0.155648 7_2:+8294363 Msa1047400:five_prime_UTR
CCCATGCCTTAGGTTGTTTA+AGG 0.160845 7_2:-8298200 None:intergenic
TCCAAGCTGAATATCCTTAA+AGG 0.192750 7_2:-8294377 None:intergenic
GCTTTCGGCCTGGCAGTTTC+AGG 0.244248 7_2:-8295484 None:intergenic
TGCAGGAATAGCTAGAAAAT+TGG 0.274864 7_2:+8295661 Msa1047400:five_prime_UTR
CTACATGCCTTCAAAGAAAA+AGG 0.295838 7_2:-8295545 None:intergenic
TCTCTTCCAAGCTTCCTCTT+TGG 0.299326 7_2:+8298141 Msa1047400:CDS
GCTATGGATTATCCAGGATT+TGG 0.314731 7_2:+8295707 Msa1047400:exon
TTTGTAAGCAACAACATTAT+AGG 0.319531 7_2:-8298727 None:intergenic
TTAGGCTGAGTGTAGAATTC+AGG 0.333949 7_2:+8294236 Msa1047400:intron
TTGCCATTGCTAATCCTTCA+TGG 0.351070 7_2:+8299362 Msa1047400:CDS
CATACTGTGAATTTATTTGC+AGG 0.357479 7_2:+8295644 Msa1047400:five_prime_UTR
GCTATGGCTACTAGGTTTCC+AGG 0.375142 7_2:+8294280 Msa1047400:five_prime_UTR
CGACATTGGCTATGGCTACT+AGG 0.390898 7_2:+8294272 Msa1047400:five_prime_UTR
AGAGGCATAGCCATATGTTA+TGG 0.393468 7_2:-8294056 None:intergenic
AGTTTAGGTACCTTTGATCT+TGG 0.394996 7_2:-8295801 None:intergenic
AACTCGTGAAACCAAAGTTT+AGG 0.396008 7_2:+8293934 None:intergenic
TAGCCATATGTTATGGTTGT+TGG 0.396898 7_2:-8294049 None:intergenic
AAATTGGCATGTGCTGGATA+TGG 0.398369 7_2:+8295677 Msa1047400:five_prime_UTR
ACTTGGATTATCATTTCATC+AGG 0.402873 7_2:-8299503 None:intergenic
TGCAATTCATTGTCAACTCC+TGG 0.404718 7_2:-8294298 None:intergenic
TGCCATTGCTAATCCTTCAT+GGG 0.412278 7_2:+8299363 Msa1047400:CDS
CAGTAAAACACAGCTGCTTT+CGG 0.413895 7_2:-8295499 None:intergenic
CTTTGAAGGCATGTAGTAGC+TGG 0.420752 7_2:+8295552 Msa1047400:five_prime_UTR
GAGATAGTGATGAGTGGAAA+TGG 0.422762 7_2:-8294015 None:intergenic
AGATTTGAAGAAGAGAGAAA+TGG 0.427655 7_2:+8298461 Msa1047400:CDS
ATAACAATCTCAATATTCAT+AGG 0.428139 7_2:-8299603 None:intergenic
GCTTACCATTCTCTTCTTGA+GGG 0.433960 7_2:+8299476 Msa1047400:CDS
TGCTTACCATTCTCTTCTTG+AGG 0.435129 7_2:+8299475 Msa1047400:CDS
CAAGAAGCTTAAACTTTACA+AGG 0.438282 7_2:+8299451 Msa1047400:CDS
ATAATATGGGACCTAAACTT+TGG 0.438734 7_2:-8293945 None:intergenic
TAGTAGCTGGTGTTAAGTTC+TGG 0.439690 7_2:+8295565 Msa1047400:five_prime_UTR
GCCTTTAAGGATATTCAGCT+TGG 0.441925 7_2:+8294376 Msa1047400:five_prime_UTR
CTTCCTCTTTGGACAATCCA+TGG 0.443316 7_2:+8298152 Msa1047400:CDS
TCAAGAAATAGAAAAGAGAT+TGG 0.449597 7_2:+8298794 Msa1047400:CDS
GCTAGAAAATTGGCATGTGC+TGG 0.472592 7_2:+8295671 Msa1047400:five_prime_UTR
TTTCCAACAACCATAACATA+TGG 0.477099 7_2:+8294046 Msa1047400:five_prime_UTR
TTGCTAGCTCAGATACTCAT+TGG 0.501169 7_2:+8298372 Msa1047400:CDS
TAGAAATCTTCTACAAGAGC+TGG 0.502129 7_2:+8295458 Msa1047400:five_prime_UTR
CCAGGATTTGGTCTTTCAGA+AGG 0.502384 7_2:+8295719 Msa1047400:CDS
GATTGTCCAAAGAGGAAGCT+TGG 0.503541 7_2:-8298147 None:intergenic
ATAGCGCCATCCCATGCCTT+AGG 0.505569 7_2:-8298210 None:intergenic
GGGAACGATGAAAACGGAAA+AGG 0.508501 7_2:-8294091 None:intergenic
TGTTATGGTTGTTGGAAAGG+AGG 0.519421 7_2:-8294041 None:intergenic
AAACACAGCTGCTTTCGGCC+TGG 0.526867 7_2:-8295494 None:intergenic
TTCCTCTTTGGACAATCCAT+GGG 0.527323 7_2:+8298153 Msa1047400:CDS
TCAACTAGCGAATCGAAACT+AGG 0.527368 7_2:-8295758 None:intergenic
ATATGTTATGGTTGTTGGAA+AGG 0.528940 7_2:-8294044 None:intergenic
AATAAAATAAAATTGAGGAA+TGG 0.528960 7_2:+8299758 Msa1047400:three_prime_UTR
CCTTCTGAAAGACCAAATCC+TGG 0.529189 7_2:-8295719 None:intergenic
TACCTTGGGAACGATGAAAA+CGG 0.539480 7_2:-8294097 None:intergenic
GCTGGTTTCCTGAAACTGCC+AGG 0.541160 7_2:+8295476 Msa1047400:five_prime_UTR
TCATACGAGGTGAACTCAAA+GGG 0.541716 7_2:+8295433 Msa1047400:five_prime_UTR
GGTAAAGACGACATTGGCTA+TGG 0.547698 7_2:+8294264 Msa1047400:five_prime_UTR
TATTGAGATTGTTATTGGCA+TGG 0.548855 7_2:+8299611 Msa1047400:three_prime_UTR
ACCTTAAACAACCTAAGGCA+TGG 0.551832 7_2:+8298199 Msa1047400:CDS
TCTTTAGATTGCAGATGACA+TGG 0.555683 7_2:+8298338 Msa1047400:intron
GCCATTGCTAATCCTTCATG+GGG 0.559750 7_2:+8299364 Msa1047400:CDS
GATGCACCTTAAACAACCTA+AGG 0.561834 7_2:+8298194 Msa1047400:CDS
CAATATCAGCCTCCCCATGA+AGG 0.562301 7_2:-8299376 None:intergenic
AAGATGAATGTTTCAAGCTG+TGG 0.564559 7_2:-8299556 None:intergenic
CTCTTTGGACAATCCATGGG+AGG 0.564768 7_2:+8298156 Msa1047400:CDS
ACAAAGATAAACCGCGGTTG+TGG 0.567389 7_2:+8298745 Msa1047400:CDS
TAAAGCAACAGCTCCTCCCA+TGG 0.568099 7_2:-8298169 None:intergenic
GTCATACGAGGTGAACTCAA+AGG 0.582659 7_2:+8295432 Msa1047400:intron
AGTATCTGAGCTAGCAACCA+TGG 0.584270 7_2:-8298366 None:intergenic
GTTCACCCTCAAGAAGAGAA+TGG 0.585405 7_2:-8299481 None:intergenic
AGGAAAGAGATAGTGATGAG+TGG 0.589083 7_2:-8294021 None:intergenic
CCTTAAACAACCTAAGGCAT+GGG 0.589776 7_2:+8298200 Msa1047400:CDS
GAGATTTACTCCAAGATCAA+AGG 0.595424 7_2:+8295791 Msa1047400:CDS
TCCACAGAAGAATTTAGCAG+AGG 0.601555 7_2:+8298428 Msa1047400:CDS
ATTGCTAATCCTTCATGGGG+AGG 0.602643 7_2:+8299367 Msa1047400:CDS
TCCCCATGAAGGATTAGCAA+TGG 0.609252 7_2:-8299365 None:intergenic
GCTTTGCAGACTCAATGCGA+TGG 0.622456 7_2:+8295271 Msa1047400:intron
CAGATGACATGGTTCCTCCA+TGG 0.625513 7_2:+8298349 Msa1047400:CDS
AAACAACCTAAGGCATGGGA+TGG 0.626145 7_2:+8298204 Msa1047400:CDS
GCCTCTGCTAAATTCTTCTG+TGG 0.628167 7_2:-8298429 None:intergenic
CTCCCATGGATTGTCCAAAG+AGG 0.649020 7_2:-8298155 None:intergenic
GAGAGAGGTAAAGACGACAT+TGG 0.659166 7_2:+8294258 Msa1047400:five_prime_UTR
GAGTGTAGAATTCAGGAGAG+AGG 0.664486 7_2:+8294243 Msa1047400:five_prime_UTR
TTGCTTACAAAGATAAACCG+CGG 0.712200 7_2:+8298739 Msa1047400:CDS
TCGACGGCAGTCCACAACCG+CGG 0.716565 7_2:-8298756 None:intergenic
TACTTCACAACAGTCATACG+AGG 0.720811 7_2:+8295420 Msa1047400:intron
ATCTGAGCTAGCAACCATGG+AGG 0.731031 7_2:-8298363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTAAAATATTTTTTTTTG+TGG + chr7_2:8296142-8296161 Msa1047400:intron 10.0%
!! ATAGCAACAAAAAAAAAAAT+TGG - chr7_2:8294141-8294160 None:intergenic 15.0%
!!! TAATTTTCTCAAATTATCAA+CGG - chr7_2:8294589-8294608 None:intergenic 15.0%
!! GAACATTATAAAACAAATTA+AGG - chr7_2:8294798-8294817 None:intergenic 15.0%
!!! TATTCAATTTCATAGTATTT+TGG + chr7_2:8294836-8294855 Msa1047400:intron 15.0%
!! ATTTCAAAAAAAAATACATG+TGG - chr7_2:8295205-8295224 None:intergenic 15.0%
!! TGTGTAGAATAATTATTAAA+AGG + chr7_2:8296072-8296091 Msa1047400:intron 15.0%
!!! AACAAATTTTGAGAAAATTA+TGG + chr7_2:8296169-8296188 Msa1047400:intron 15.0%
!! AAAAAAATTACTTTACACAT+TGG - chr7_2:8298246-8298265 None:intergenic 15.0%
!! AAACAAAAACAATATTCTAT+TGG - chr7_2:8298502-8298521 None:intergenic 15.0%
!!! GTTTGATAACTTAAAAATTT+TGG + chr7_2:8298518-8298537 Msa1047400:intron 15.0%
!!! TTTTTAGTGATATCATTTTA+TGG + chr7_2:8299525-8299544 Msa1047400:CDS 15.0%
!! AAAATTATTGAGATTGTTAT+TGG + chr7_2:8299686-8299705 Msa1047400:intron 15.0%
!! AATAAAATAAAATTGAGGAA+TGG + chr7_2:8299758-8299777 Msa1047400:three_prime_UTR 15.0%
!!! TTTTTCTGAGTAGATAATAT+GGG - chr7_2:8293961-8293980 None:intergenic 20.0%
!!! ATTTTTCTGAGTAGATAATA+TGG - chr7_2:8293962-8293981 None:intergenic 20.0%
!! AAAAATAAAGTCAATCCAAA+CGG - chr7_2:8294471-8294490 None:intergenic 20.0%
!!! TTTGGATTGACTTTATTTTT+AGG + chr7_2:8294471-8294490 Msa1047400:intron 20.0%
!! TATTATTCATAAGTTTGTCA+AGG + chr7_2:8294502-8294521 Msa1047400:intron 20.0%
!!! ATGTATTTGTGTTTAAAATG+TGG + chr7_2:8295346-8295365 Msa1047400:intron 20.0%
!! GTGTCAAATAAAAAATAATG+AGG + chr7_2:8296370-8296389 Msa1047400:intron 20.0%
!! TAATATCAATAGTAAAGAGT+AGG + chr7_2:8296506-8296525 Msa1047400:intron 20.0%
!! AATATCAATAGTAAAGAGTA+GGG + chr7_2:8296507-8296526 Msa1047400:intron 20.0%
!! TTGTAGTTATTATCTAACTT+AGG + chr7_2:8297215-8297234 Msa1047400:intron 20.0%
!!! TCTTTTAGTTTAGTATTCAT+AGG + chr7_2:8297247-8297266 Msa1047400:intron 20.0%
!!! CTTTTAGTTTAGTATTCATA+GGG + chr7_2:8297248-8297267 Msa1047400:intron 20.0%
!!! GAGTAATTTTTTTAGCTTTA+TGG + chr7_2:8297362-8297381 Msa1047400:intron 20.0%
!!! ATTTTTTTAGCTTTATGGAA+AGG + chr7_2:8297367-8297386 Msa1047400:intron 20.0%
!! TCAAATGAAGAATAATAAGA+TGG - chr7_2:8297414-8297433 None:intergenic 20.0%
!!! GTTTCATTACTAGTTTATAA+AGG + chr7_2:8297601-8297620 Msa1047400:intron 20.0%
!! CTATGATACTATCTTAATTT+GGG - chr7_2:8297679-8297698 None:intergenic 20.0%
!! ACTATGATACTATCTTAATT+TGG - chr7_2:8297680-8297699 None:intergenic 20.0%
!! GTAAAGAAGTCTTAAAATTT+CGG - chr7_2:8297886-8297905 None:intergenic 20.0%
!!! TGTATATTTTACTTTCCTTT+GGG + chr7_2:8297953-8297972 Msa1047400:intron 20.0%
!! ATTTCATTATTTATACCCAA+AGG - chr7_2:8297971-8297990 None:intergenic 20.0%
!! TTTGGGTATAAATAATGAAA+TGG + chr7_2:8297970-8297989 Msa1047400:intron 20.0%
!! GTAAAAAGTGATATATTTGT+AGG - chr7_2:8298546-8298565 None:intergenic 20.0%
!! ATCAAATGGAAAAAGAAAAA+CGG - chr7_2:8299129-8299148 None:intergenic 20.0%
!!! TAAAGATGTCATACTTTTAT+TGG + chr7_2:8299181-8299200 Msa1047400:intron 20.0%
!! AAATGATATCACTAAAAACT+TGG - chr7_2:8299523-8299542 None:intergenic 20.0%
!! ATAACAATCTCAATATTCAT+AGG - chr7_2:8299606-8299625 None:intergenic 20.0%
!! ATGAATATTGAGATTGTTAT+TGG + chr7_2:8299606-8299625 Msa1047400:three_prime_UTR 20.0%
!!! AAAAGGTTTGAAATTTTGAG+AGG - chr7_2:8294077-8294096 None:intergenic 25.0%
!!! AATTTTGTTGCTTTTTCATG+TGG + chr7_2:8294180-8294199 Msa1047400:intron 25.0%
!!! ATTTTGTTGCTTTTTCATGT+GGG + chr7_2:8294181-8294200 Msa1047400:intron 25.0%
!! CAATGAATTGCATAAGATTT+TGG + chr7_2:8294309-8294328 Msa1047400:five_prime_UTR 25.0%
!! TAAGATTTTGGATGCTAATA+TGG + chr7_2:8294321-8294340 Msa1047400:five_prime_UTR 25.0%
! AATTGATCACATACTCTTTA+AGG + chr7_2:8294399-8294418 Msa1047400:five_prime_UTR 25.0%
! TCTTAGTGTATTTCTTTCAT+AGG - chr7_2:8294447-8294466 None:intergenic 25.0%
! AAAATAAAGTCAATCCAAAC+GGG - chr7_2:8294470-8294489 None:intergenic 25.0%
! AAAAGTAACTCAATCTGATT+GGG + chr7_2:8294772-8294791 Msa1047400:intron 25.0%
! AATACATGTGGAAATTTAAG+AGG - chr7_2:8295193-8295212 None:intergenic 25.0%
! CTCAGAGAAAGTAAAAATTT+AGG - chr7_2:8295240-8295259 None:intergenic 25.0%
! TGTAGTATTCAATTTCAACA+TGG - chr7_2:8295859-8295878 None:intergenic 25.0%
! TTATTAAAAGGACACAACTT+AGG + chr7_2:8296084-8296103 Msa1047400:intron 25.0%
! TTGAGAAAATTATGGATTTG+AGG + chr7_2:8296177-8296196 Msa1047400:intron 25.0%
!!! ATAATGAGGAATTTTTCAGT+AGG + chr7_2:8296384-8296403 Msa1047400:intron 25.0%
!!! TAATGAGGAATTTTTCAGTA+GGG + chr7_2:8296385-8296404 Msa1047400:intron 25.0%
!! CTGTACTGTACATAATTTTT+CGG - chr7_2:8297141-8297160 None:intergenic 25.0%
! GAAAAATTATGTACAGTACA+GGG + chr7_2:8297140-8297159 Msa1047400:intron 25.0%
! TGTTTGCAGTTAGAATAATA+AGG - chr7_2:8297318-8297337 None:intergenic 25.0%
! TTGTGCAAAATAGAATTTCT+TGG + chr7_2:8297494-8297513 Msa1047400:intron 25.0%
! ATAGTCTATTCAAGATCAAT+TGG + chr7_2:8297695-8297714 Msa1047400:intron 25.0%
! TAGTCTATTCAAGATCAATT+GGG + chr7_2:8297696-8297715 Msa1047400:intron 25.0%
! AAACCATATCTCATCTAATA+TGG - chr7_2:8297792-8297811 None:intergenic 25.0%
! ATGAGATATGGTTTCAAAAT+CGG + chr7_2:8297798-8297817 Msa1047400:intron 25.0%
!! AAAATCGGTTTATAAATCTG+AGG + chr7_2:8297813-8297832 Msa1047400:intron 25.0%
!!! AATTTTAAGACTTCTTTACC+TGG + chr7_2:8297887-8297906 Msa1047400:intron 25.0%
!! GTGTATATTTTACTTTCCTT+TGG + chr7_2:8297952-8297971 Msa1047400:intron 25.0%
!!! TTCTGAAACAATTTAACTTC+AGG + chr7_2:8298268-8298287 Msa1047400:intron 25.0%
!! AGTGAATAATCAAACTTTTC+TGG + chr7_2:8298687-8298706 Msa1047400:intron 25.0%
! TTTGTAAGCAACAACATTAT+AGG - chr7_2:8298730-8298749 None:intergenic 25.0%
! TCAAGAAATAGAAAAGAGAT+TGG + chr7_2:8298794-8298813 Msa1047400:CDS 25.0%
!!! ATTGTTTTGCAATGCATTTA+TGG + chr7_2:8298907-8298926 Msa1047400:intron 25.0%
! GATTTAAGTCAGAAATCAAA+TGG - chr7_2:8299143-8299162 None:intergenic 25.0%
!! AATACTGTGATTTTCTGTTA+AGG + chr7_2:8299304-8299323 Msa1047400:intron 25.0%
!!! GTAATGGTTTTGATGATTAT+AGG + chr7_2:8299334-8299353 Msa1047400:intron 25.0%
ATATGTTATGGTTGTTGGAA+AGG - chr7_2:8294047-8294066 None:intergenic 30.0%
TTTCCAACAACCATAACATA+TGG + chr7_2:8294046-8294065 Msa1047400:five_prime_UTR 30.0%
!! TTTTGTTGTCAAAGTACCTT+GGG - chr7_2:8294114-8294133 None:intergenic 30.0%
!! TTTTTGTTGTCAAAGTACCT+TGG - chr7_2:8294115-8294134 None:intergenic 30.0%
!!! TTTTGTTGCTTTTTCATGTG+GGG + chr7_2:8294182-8294201 Msa1047400:intron 30.0%
CAAAAGTAACTCAATCTGAT+TGG + chr7_2:8294771-8294790 Msa1047400:intron 30.0%
TTCATATTCATGTTGTTCTG+TGG + chr7_2:8294982-8295001 Msa1047400:intron 30.0%
! ATGTGGTTAGGTTTTCTTAA+AGG + chr7_2:8295036-8295055 Msa1047400:intron 30.0%
ACTTGAAATCTCAAAGTCAA+CGG - chr7_2:8295063-8295082 None:intergenic 30.0%
TGATAGATAGTTCATAGAGT+AGG + chr7_2:8295083-8295102 Msa1047400:intron 30.0%
AACCATGAATAAATTCAACG+AGG + chr7_2:8295114-8295133 Msa1047400:intron 30.0%
CAAGTAATGCAAATACAGAA+AGG - chr7_2:8295399-8295418 None:intergenic 30.0%
CATACTGTGAATTTATTTGC+AGG + chr7_2:8295644-8295663 Msa1047400:five_prime_UTR 30.0%
TGAATACTACAAATCTACTG+TGG + chr7_2:8295868-8295887 Msa1047400:intron 30.0%
AGAGTATAATAGTGTACCAT+AGG + chr7_2:8295916-8295935 Msa1047400:intron 30.0%
GAGTATAATAGTGTACCATA+GGG + chr7_2:8295917-8295936 Msa1047400:intron 30.0%
AGTATAATAGTGTACCATAG+GGG + chr7_2:8295918-8295937 Msa1047400:intron 30.0%
TTATGGATTTGAGGAAATCA+TGG + chr7_2:8296186-8296205 Msa1047400:intron 30.0%
TATGGATTTGAGGAAATCAT+GGG + chr7_2:8296187-8296206 Msa1047400:intron 30.0%
TCTCCTTTATAACCAAACTT+AGG - chr7_2:8296268-8296287 None:intergenic 30.0%
AAAGGAGAGTTATGTTAAAC+AGG + chr7_2:8296280-8296299 Msa1047400:intron 30.0%
AAGGAGAGTTATGTTAAACA+GGG + chr7_2:8296281-8296300 Msa1047400:intron 30.0%
AACTAGAACTACAACATCAA+AGG + chr7_2:8296323-8296342 Msa1047400:intron 30.0%
GAACGATAGATACCTAAATA+GGG + chr7_2:8296529-8296548 Msa1047400:intron 30.0%
ATAGATACCTAAATAGGGTA+GGG + chr7_2:8296534-8296553 Msa1047400:intron 30.0%
GCTAATTCGTTCCATATATA+AGG - chr7_2:8296565-8296584 None:intergenic 30.0%
TTTACTTAGTTGTTAGACTC+AGG + chr7_2:8296751-8296770 Msa1047400:intron 30.0%
TGCTTGTAATTTACATTCAC+TGG - chr7_2:8296811-8296830 None:intergenic 30.0%
GAATGTAAATTACAAGCAGA+CGG + chr7_2:8296813-8296832 Msa1047400:intron 30.0%
CGAAAAATTATGTACAGTAC+AGG + chr7_2:8297139-8297158 Msa1047400:intron 30.0%
! TAGCTTGCAAAATATGACAA+AGG - chr7_2:8297275-8297294 None:intergenic 30.0%
GAAACATATAAGATGACAGT+AGG - chr7_2:8297586-8297605 None:intergenic 30.0%
TTAACTCAACCATGTAAAAC+CGG - chr7_2:8297650-8297669 None:intergenic 30.0%
AGTCCATATTAGATGAGATA+TGG + chr7_2:8297786-8297805 Msa1047400:intron 30.0%
AATATCGGCATGTAAAGTAA+GGG - chr7_2:8297842-8297861 None:intergenic 30.0%
TGCACACAAGTTAATAAAAC+TGG + chr7_2:8298041-8298060 Msa1047400:intron 30.0%
CGAAACTATATCCTTACAAA+AGG + chr7_2:8298081-8298100 Msa1047400:intron 30.0%
CTATATCCTTACAAAAGGTT+TGG + chr7_2:8298086-8298105 Msa1047400:intron 30.0%
! AATGAACCAAACCTTTTGTA+AGG - chr7_2:8298095-8298114 None:intergenic 30.0%
! ATCTAAAGAAATAGAGTGTC+TGG - chr7_2:8298327-8298346 None:intergenic 30.0%
AGATTTGAAGAAGAGAGAAA+TGG + chr7_2:8298461-8298480 Msa1047400:CDS 30.0%
! ACAAGTTGAATTCGAAAGAT+AGG - chr7_2:8298832-8298851 None:intergenic 30.0%
TCGTGACAAGATTTAATTCA+CGG + chr7_2:8299220-8299239 Msa1047400:intron 30.0%
!! TAATTCACGGTTCTGAAAAT+AGG + chr7_2:8299233-8299252 Msa1047400:intron 30.0%
TCACAGTATTCAATATTGCA+TGG - chr7_2:8299294-8299313 None:intergenic 30.0%
!! CTGTTAAGGTTGATATGTAA+TGG + chr7_2:8299318-8299337 Msa1047400:intron 30.0%
! TAAAATGTTTTGCTCACTGA+GGG - chr7_2:8299410-8299429 None:intergenic 30.0%
CAAGAAGCTTAAACTTTACA+AGG + chr7_2:8299451-8299470 Msa1047400:CDS 30.0%
ACTTGGATTATCATTTCATC+AGG - chr7_2:8299506-8299525 None:intergenic 30.0%
! TATTGAGATTGTTATTGGCA+TGG + chr7_2:8299611-8299630 Msa1047400:three_prime_UTR 30.0%
! TATTGAGATTGTTATTGGCA+TGG + chr7_2:8299611-8299630 Msa1047400:three_prime_UTR 30.0%
TAGCCATATGTTATGGTTGT+TGG - chr7_2:8294052-8294071 None:intergenic 35.0%
!!! ATTGCTTTTTGTGACCCTTT+AGG + chr7_2:8294218-8294237 Msa1047400:intron 35.0%
AATTCTACACTCAGCCTAAA+GGG - chr7_2:8294235-8294254 None:intergenic 35.0%
TCCAAGCTGAATATCCTTAA+AGG - chr7_2:8294380-8294399 None:intergenic 35.0%
GGACAGACTTTACTTATCTT+CGG + chr7_2:8294857-8294876 Msa1047400:intron 35.0%
GACAGACTTTACTTATCTTC+GGG + chr7_2:8294858-8294877 Msa1047400:intron 35.0%
GATCCTGGTAATCAAAAGTT+CGG - chr7_2:8294884-8294903 None:intergenic 35.0%
!! TAGTCAATTGGTGCTATTCA+TGG + chr7_2:8295005-8295024 Msa1047400:intron 35.0%
TATTCATGGTAGTTGAGATG+TGG + chr7_2:8295019-8295038 Msa1047400:intron 35.0%
CTTGAAATCTCAAAGTCAAC+GGG - chr7_2:8295062-8295081 None:intergenic 35.0%
AGATAGTTCATAGAGTAGGA+TGG + chr7_2:8295087-8295106 Msa1047400:intron 35.0%
TGCCTCGTTGAATTTATTCA+TGG - chr7_2:8295119-8295138 None:intergenic 35.0%
! TTTAAGAGGCACATTCTAAG+AGG - chr7_2:8295179-8295198 None:intergenic 35.0%
ATTGAGTCTGCAAAGCATAA+AGG - chr7_2:8295267-8295286 None:intergenic 35.0%
!! ATGCGATGGACTAAAAATGA+AGG + chr7_2:8295285-8295304 Msa1047400:five_prime_UTR 35.0%
CAAATACAGAAAGGAGGAAA+AGG - chr7_2:8295390-8295409 None:intergenic 35.0%
GTAATGCAAATACAGAAAGG+AGG - chr7_2:8295396-8295415 None:intergenic 35.0%
TAGAAATCTTCTACAAGAGC+TGG + chr7_2:8295458-8295477 Msa1047400:five_prime_UTR 35.0%
! GTGTTTTACTGTCATGGTTA+TGG + chr7_2:8295511-8295530 Msa1047400:five_prime_UTR 35.0%
! ACTTCCACCTTTTTCTTTGA+AGG + chr7_2:8295538-8295557 Msa1047400:five_prime_UTR 35.0%
CTACATGCCTTCAAAGAAAA+AGG - chr7_2:8295548-8295567 None:intergenic 35.0%
TGCAGGAATAGCTAGAAAAT+TGG + chr7_2:8295661-8295680 Msa1047400:five_prime_UTR 35.0%
! TGGATATGGAGTTTTTGCTA+TGG + chr7_2:8295691-8295710 Msa1047400:exon 35.0%
!! GTTTTTGCTATGGATTATCC+AGG + chr7_2:8295701-8295720 Msa1047400:exon 35.0%
GAGATTTACTCCAAGATCAA+AGG + chr7_2:8295791-8295810 Msa1047400:CDS 35.0%
AGTTTAGGTACCTTTGATCT+TGG - chr7_2:8295804-8295823 None:intergenic 35.0%
! GGTAGAATTAGTTTCTTGTC+AGG + chr7_2:8295889-8295908 Msa1047400:intron 35.0%
! GAATTAGTTTCTTGTCAGGA+AGG + chr7_2:8295893-8295912 Msa1047400:intron 35.0%
CTACTTAAGGCATGAAGTTA+AGG + chr7_2:8295946-8295965 Msa1047400:intron 35.0%
ACTACTTTCAGAGCAAAAAC+TGG - chr7_2:8296016-8296035 None:intergenic 35.0%
!! ACAACACGAAAAAGTACCTA+AGG - chr7_2:8296117-8296136 None:intergenic 35.0%
AACAACACGAAAAACACCTA+AGG + chr7_2:8296235-8296254 Msa1047400:intron 35.0%
AAACTTAGGTGCATTTCCTT+AGG - chr7_2:8296254-8296273 None:intergenic 35.0%
TAAGGAAATGCACCTAAGTT+TGG + chr7_2:8296253-8296272 Msa1047400:intron 35.0%
GCACCTAAGTTTGGTTATAA+AGG + chr7_2:8296262-8296281 Msa1047400:intron 35.0%
TTATGTTAAACAGGGCTCTT+AGG + chr7_2:8296289-8296308 Msa1047400:intron 35.0%
!! GTAGTTCTAGTTGTATCATC+TGG - chr7_2:8296315-8296334 None:intergenic 35.0%
!! CTCTCAAAGCATTTGTGTTT+TGG - chr7_2:8296351-8296370 None:intergenic 35.0%
! CAACGAGTTTTACATAGGAA+AGG - chr7_2:8296480-8296499 None:intergenic 35.0%
! ACAGACAACGAGTTTTACAT+AGG - chr7_2:8296485-8296504 None:intergenic 35.0%
GGAACGATAGATACCTAAAT+AGG + chr7_2:8296528-8296547 Msa1047400:intron 35.0%
GATAGATACCTAAATAGGGT+AGG + chr7_2:8296533-8296552 Msa1047400:intron 35.0%
TGGTAAGGAATCTGAATAAG+AGG - chr7_2:8296630-8296649 None:intergenic 35.0%
TATTCAGATTCCTTACCACA+AGG + chr7_2:8296632-8296651 Msa1047400:intron 35.0%
ATTAATCAGTAAAGCAGGAC+AGG - chr7_2:8296700-8296719 None:intergenic 35.0%
CGAAGATTAATCAGTAAAGC+AGG - chr7_2:8296705-8296724 None:intergenic 35.0%
CTCTTAACTAAGCTTCTTGT+TGG - chr7_2:8297000-8297019 None:intergenic 35.0%
AATAGAATCGGTGTGCTAAT+CGG - chr7_2:8297110-8297129 None:intergenic 35.0%
TCGGTCATCTCTAATAGAAT+CGG - chr7_2:8297122-8297141 None:intergenic 35.0%
AAATTATGTACAGTACAGGG+TGG + chr7_2:8297143-8297162 Msa1047400:intron 35.0%
AATTATGTACAGTACAGGGT+GGG + chr7_2:8297144-8297163 Msa1047400:intron 35.0%
! CTTTGTATCCAGCTTTAACA+GGG - chr7_2:8297183-8297202 None:intergenic 35.0%
ACCTATGTACCTTTCAACTT+AGG + chr7_2:8297441-8297460 Msa1047400:intron 35.0%
! TCCTAAGTTGAAAGGTACAT+AGG - chr7_2:8297445-8297464 None:intergenic 35.0%
! CACTAACTTCCTAAGTTGAA+AGG - chr7_2:8297453-8297472 None:intergenic 35.0%
TCAATTGGGTTATCTGCTAT+TGG + chr7_2:8297710-8297729 Msa1047400:intron 35.0%
CAATTGGGTTATCTGCTATT+GGG + chr7_2:8297711-8297730 Msa1047400:intron 35.0%
CAATATCGGCATGTAAAGTA+AGG - chr7_2:8297843-8297862 None:intergenic 35.0%
CTTTACATGCCGATATTGTA+CGG + chr7_2:8297845-8297864 Msa1047400:intron 35.0%
CTAACTCAACCGTACAATAT+CGG - chr7_2:8297857-8297876 None:intergenic 35.0%
! AAGCAAAAGTTCAAGTTTCC+AGG - chr7_2:8297908-8297927 None:intergenic 35.0%
! CTTGAACTTTTGCTTTCACA+TGG + chr7_2:8297913-8297932 Msa1047400:intron 35.0%
TCTTTAGATTGCAGATGACA+TGG + chr7_2:8298338-8298357 Msa1047400:intron 35.0%
! TGTGGAACTAACTTTTGCTT+TGG - chr7_2:8298414-8298433 None:intergenic 35.0%
TTGCTTACAAAGATAAACCG+CGG + chr7_2:8298739-8298758 Msa1047400:CDS 35.0%
!!! AGTAGTTTTAAGCATCTCGA+CGG - chr7_2:8298775-8298794 None:intergenic 35.0%
! ATGTTTTCTTCTCTTCTCCT+TGG + chr7_2:8298884-8298903 Msa1047400:intron 35.0%
ATGCATTGCAAAACAATCCA+AGG - chr7_2:8298904-8298923 None:intergenic 35.0%
ATGCAAAGCTGACAAAAAGT+GGG - chr7_2:8299100-8299119 None:intergenic 35.0%
TATGCAAAGCTGACAAAAAG+TGG - chr7_2:8299101-8299120 None:intergenic 35.0%
! GTAAAATGTTTTGCTCACTG+AGG - chr7_2:8299411-8299430 None:intergenic 35.0%
AAGATGAATGTTTCAAGCTG+TGG - chr7_2:8299559-8299578 None:intergenic 35.0%
GAGATAGTGATGAGTGGAAA+TGG - chr7_2:8294018-8294037 None:intergenic 40.0%
AGGAAAGAGATAGTGATGAG+TGG - chr7_2:8294024-8294043 None:intergenic 40.0%
TGTTATGGTTGTTGGAAAGG+AGG - chr7_2:8294044-8294063 None:intergenic 40.0%
! AGAGGCATAGCCATATGTTA+TGG - chr7_2:8294059-8294078 None:intergenic 40.0%
TACCTTGGGAACGATGAAAA+CGG - chr7_2:8294100-8294119 None:intergenic 40.0%
GAATTCTACACTCAGCCTAA+AGG - chr7_2:8294236-8294255 None:intergenic 40.0%
TTAGGCTGAGTGTAGAATTC+AGG + chr7_2:8294236-8294255 Msa1047400:intron 40.0%
TGCAATTCATTGTCAACTCC+TGG - chr7_2:8294301-8294320 None:intergenic 40.0%
! GCCTTTAAGGATATTCAGCT+TGG + chr7_2:8294376-8294395 Msa1047400:five_prime_UTR 40.0%
GAAATACACTAAGACCCGTT+TGG + chr7_2:8294453-8294472 Msa1047400:intron 40.0%
ATTCTCAGATAAAGGGATCC+TGG - chr7_2:8294899-8294918 None:intergenic 40.0%
GGATCCCTTTATCTGAGAAT+CGG + chr7_2:8294899-8294918 Msa1047400:intron 40.0%
CACTCCGATTCTCAGATAAA+GGG - chr7_2:8294906-8294925 None:intergenic 40.0%
ACACTCCGATTCTCAGATAA+AGG - chr7_2:8294907-8294926 None:intergenic 40.0%
GTTGTTCTGTGGTAGTCAAT+TGG + chr7_2:8294993-8295012 Msa1047400:intron 40.0%
ATGGTAGTTGAGATGTGGTT+AGG + chr7_2:8295024-8295043 Msa1047400:intron 40.0%
!! CGATGGACTAAAAATGAAGG+AGG + chr7_2:8295288-8295307 Msa1047400:five_prime_UTR 40.0%
TACTTCACAACAGTCATACG+AGG + chr7_2:8295420-8295439 Msa1047400:intron 40.0%
TCATACGAGGTGAACTCAAA+GGG + chr7_2:8295433-8295452 Msa1047400:five_prime_UTR 40.0%
! CAGTAAAACACAGCTGCTTT+CGG - chr7_2:8295502-8295521 None:intergenic 40.0%
CATGCCTTCAAAGAAAAAGG+TGG - chr7_2:8295545-8295564 None:intergenic 40.0%
! TAGTAGCTGGTGTTAAGTTC+TGG + chr7_2:8295565-8295584 Msa1047400:five_prime_UTR 40.0%
AAATTGGCATGTGCTGGATA+TGG + chr7_2:8295677-8295696 Msa1047400:five_prime_UTR 40.0%
! GCTATGGATTATCCAGGATT+TGG + chr7_2:8295707-8295726 Msa1047400:exon 40.0%
TCAACTAGCGAATCGAAACT+AGG - chr7_2:8295761-8295780 None:intergenic 40.0%
CAACTTAGGTGTGTTTCCTT+AGG + chr7_2:8296098-8296117 Msa1047400:intron 40.0%
! TGAAAACATGAGTTGACCTC+AGG + chr7_2:8296420-8296439 Msa1047400:intron 40.0%
! GAAAACATGAGTTGACCTCA+GGG + chr7_2:8296421-8296440 Msa1047400:intron 40.0%
! AAAACATGAGTTGACCTCAG+GGG + chr7_2:8296422-8296441 Msa1047400:intron 40.0%
ATACCTAAATAGGGTAGGGA+TGG + chr7_2:8296538-8296557 Msa1047400:intron 40.0%
GTAGGGATGGTCCTTATATA+TGG + chr7_2:8296551-8296570 Msa1047400:intron 40.0%
CTCAGGCCATATGGATAATA+CGG + chr7_2:8296604-8296623 Msa1047400:intron 40.0%
AAGAGGCCGTATTATCCATA+TGG - chr7_2:8296613-8296632 None:intergenic 40.0%
ATGAATGCACAAGCATTCAG+AGG + chr7_2:8296725-8296744 Msa1047400:intron 40.0%
! TAGCATAGTTTGTGAGAAGC+TGG + chr7_2:8296840-8296859 Msa1047400:intron 40.0%
!!! GATGAACCTGCCTTTTTTGT+TGG - chr7_2:8296912-8296931 None:intergenic 40.0%
TGGGATGAAATAATGACCCA+GGG - chr7_2:8296975-8296994 None:intergenic 40.0%
CATTCTCACATTGCTTCTAG+AGG + chr7_2:8297024-8297043 Msa1047400:intron 40.0%
! TCACATTGCTTCTAGAGGAT+CGG + chr7_2:8297029-8297048 Msa1047400:intron 40.0%
ATTATGTACAGTACAGGGTG+GGG + chr7_2:8297145-8297164 Msa1047400:intron 40.0%
! GCTTTGTATCCAGCTTTAAC+AGG - chr7_2:8297184-8297203 None:intergenic 40.0%
CGATATTGTACGGTTGAGTT+AGG + chr7_2:8297855-8297874 Msa1047400:intron 40.0%
CTTGGAAGAGATTGCAATTC+TGG - chr7_2:8298132-8298151 None:intergenic 40.0%
TTCCTCTTTGGACAATCCAT+GGG + chr7_2:8298153-8298172 Msa1047400:CDS 40.0%
GATGCACCTTAAACAACCTA+AGG + chr7_2:8298194-8298213 Msa1047400:CDS 40.0%
ACCTTAAACAACCTAAGGCA+TGG + chr7_2:8298199-8298218 Msa1047400:CDS 40.0%
CCTTAAACAACCTAAGGCAT+GGG + chr7_2:8298200-8298219 Msa1047400:CDS 40.0%
TTGCTAGCTCAGATACTCAT+TGG + chr7_2:8298372-8298391 Msa1047400:CDS 40.0%
TCCACAGAAGAATTTAGCAG+AGG + chr7_2:8298428-8298447 Msa1047400:CDS 40.0%
CACTAGAGATTCACATCGAT+TGG - chr7_2:8298984-8299003 None:intergenic 40.0%
! GTGGGCAATTACACTAGTTT+AGG - chr7_2:8299082-8299101 None:intergenic 40.0%
TTGCCATTGCTAATCCTTCA+TGG + chr7_2:8299362-8299381 Msa1047400:CDS 40.0%
TGCCATTGCTAATCCTTCAT+GGG + chr7_2:8299363-8299382 Msa1047400:CDS 40.0%
TGCTTACCATTCTCTTCTTG+AGG + chr7_2:8299475-8299494 Msa1047400:CDS 40.0%
GCTTACCATTCTCTTCTTGA+GGG + chr7_2:8299476-8299495 Msa1047400:CDS 40.0%
GGGAACGATGAAAACGGAAA+AGG - chr7_2:8294094-8294113 None:intergenic 45.0%
! TTCCGTTTTCATCGTTCCCA+AGG + chr7_2:8294095-8294114 Msa1047400:five_prime_UTR 45.0%
GAGTGTAGAATTCAGGAGAG+AGG + chr7_2:8294243-8294262 Msa1047400:five_prime_UTR 45.0%
GAGAGAGGTAAAGACGACAT+TGG + chr7_2:8294258-8294277 Msa1047400:five_prime_UTR 45.0%
! GGTAAAGACGACATTGGCTA+TGG + chr7_2:8294264-8294283 Msa1047400:five_prime_UTR 45.0%
ACAAGCTCGTGAAGCCTTTA+AGG + chr7_2:8294363-8294382 Msa1047400:five_prime_UTR 45.0%
TATGAAGCATGGACACTCCT+CGG - chr7_2:8294664-8294683 None:intergenic 45.0%
GTCATACGAGGTGAACTCAA+AGG + chr7_2:8295432-8295451 Msa1047400:intron 45.0%
! GCAGCTGTGTTTTACTGTCA+TGG + chr7_2:8295505-8295524 Msa1047400:five_prime_UTR 45.0%
! CTTTGAAGGCATGTAGTAGC+TGG + chr7_2:8295552-8295571 Msa1047400:five_prime_UTR 45.0%
GCTAGAAAATTGGCATGTGC+TGG + chr7_2:8295671-8295690 Msa1047400:five_prime_UTR 45.0%
! CCTTCTGAAAGACCAAATCC+TGG - chr7_2:8295722-8295741 None:intergenic 45.0%
! CCAGGATTTGGTCTTTCAGA+AGG + chr7_2:8295719-8295738 Msa1047400:CDS 45.0%
!! CAAAGGTACCTAAACTCGCA+TGG + chr7_2:8295808-8295827 Msa1047400:intron 45.0%
ACACAGTTCCATGCGAGTTT+AGG - chr7_2:8295819-8295838 None:intergenic 45.0%
CTTAAGTAGTCATGCCCCTA+TGG - chr7_2:8295935-8295954 None:intergenic 45.0%
! CATAGGGGCATGACTACTTA+AGG + chr7_2:8295933-8295952 Msa1047400:intron 45.0%
CTGAGACATAAGGCTTGTCA+GGG - chr7_2:8296589-8296608 None:intergenic 45.0%
TCCATATGGCCTGAGACATA+AGG - chr7_2:8296599-8296618 None:intergenic 45.0%
ATTCCTTACCACAAGGTCGA+TGG + chr7_2:8296639-8296658 Msa1047400:intron 45.0%
TTCCTTACCACAAGGTCGAT+GGG + chr7_2:8296640-8296659 Msa1047400:intron 45.0%
TAAAGCAGGACAGGAACAGT+AGG - chr7_2:8296691-8296710 None:intergenic 45.0%
AATGCACAAGCATTCAGAGG+TGG + chr7_2:8296728-8296747 Msa1047400:intron 45.0%
AATGAATGCAGAGCGACAGT+TGG - chr7_2:8296778-8296797 None:intergenic 45.0%
TCATCCCACGCCAACAAAAA+AGG + chr7_2:8296899-8296918 Msa1047400:intron 45.0%
GCAAAATAATGACCCTCGCA+GGG - chr7_2:8296937-8296956 None:intergenic 45.0%
AGCAAAATAATGACCCTCGC+AGG - chr7_2:8296938-8296957 None:intergenic 45.0%
GTGGGATGAAATAATGACCC+AGG - chr7_2:8296976-8296995 None:intergenic 45.0%
ACTAAGCTTCTTGTTGGCGT+GGG - chr7_2:8296994-8297013 None:intergenic 45.0%
AACTAAGCTTCTTGTTGGCG+TGG - chr7_2:8296995-8297014 None:intergenic 45.0%
! CACATTGCTTCTAGAGGATC+GGG + chr7_2:8297030-8297049 Msa1047400:intron 45.0%
! ACATTGCTTCTAGAGGATCG+GGG + chr7_2:8297031-8297050 Msa1047400:intron 45.0%
TTATGTACAGTACAGGGTGG+GGG + chr7_2:8297146-8297165 Msa1047400:intron 45.0%
AAAACCGGCATGTAAGGTGA+GGG - chr7_2:8297635-8297654 None:intergenic 45.0%
TAAAACCGGCATGTAAGGTG+AGG - chr7_2:8297636-8297655 None:intergenic 45.0%
CCATGTAAAACCGGCATGTA+AGG - chr7_2:8297641-8297660 None:intergenic 45.0%
!!! CCTTACATGCCGGTTTTACA+TGG + chr7_2:8297638-8297657 Msa1047400:intron 45.0%
TCTCTTCCAAGCTTCCTCTT+TGG + chr7_2:8298141-8298160 Msa1047400:CDS 45.0%
GATTGTCCAAAGAGGAAGCT+TGG - chr7_2:8298150-8298169 None:intergenic 45.0%
CTTCCTCTTTGGACAATCCA+TGG + chr7_2:8298152-8298171 Msa1047400:CDS 45.0%
! CCCATGCCTTAGGTTGTTTA+AGG - chr7_2:8298203-8298222 None:intergenic 45.0%
AAACAACCTAAGGCATGGGA+TGG + chr7_2:8298204-8298223 Msa1047400:CDS 45.0%
AGTATCTGAGCTAGCAACCA+TGG - chr7_2:8298369-8298388 None:intergenic 45.0%
GCCTCTGCTAAATTCTTCTG+TGG - chr7_2:8298432-8298451 None:intergenic 45.0%
ACAAAGATAAACCGCGGTTG+TGG + chr7_2:8298745-8298764 Msa1047400:CDS 45.0%
GCCATTGCTAATCCTTCATG+GGG + chr7_2:8299364-8299383 Msa1047400:CDS 45.0%
! TCCCCATGAAGGATTAGCAA+TGG - chr7_2:8299368-8299387 None:intergenic 45.0%
ATTGCTAATCCTTCATGGGG+AGG + chr7_2:8299367-8299386 Msa1047400:CDS 45.0%
GTTCACCCTCAAGAAGAGAA+TGG - chr7_2:8299484-8299503 None:intergenic 45.0%
!!! TTTTTAATAAAATAAAATTG+AGG + chr7_2:8299753-8299772 Msa1047400:three_prime_UTR 5.0%
! CGACATTGGCTATGGCTACT+AGG + chr7_2:8294272-8294291 Msa1047400:five_prime_UTR 50.0%
GCTATGGCTACTAGGTTTCC+AGG + chr7_2:8294280-8294299 Msa1047400:five_prime_UTR 50.0%
ACATGTGTATGTCCGACACC+AGG + chr7_2:8294627-8294646 Msa1047400:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG - chr7_2:8294642-8294661 None:intergenic 50.0%
!! GAGGAGTGTCCATGCTTCAT+AGG + chr7_2:8294663-8294682 Msa1047400:intron 50.0%
CCTCACATGCCTATGAAGCA+TGG - chr7_2:8294675-8294694 None:intergenic 50.0%
CCATGCTTCATAGGCATGTG+AGG + chr7_2:8294672-8294691 Msa1047400:intron 50.0%
!! GGGCCGAACTTTTGATTACC+AGG + chr7_2:8294878-8294897 Msa1047400:intron 50.0%
GCTTTGCAGACTCAATGCGA+TGG + chr7_2:8295271-8295290 Msa1047400:intron 50.0%
!! AAAGGTACCTCCCCTCAGAT+CGG - chr7_2:8296462-8296481 None:intergenic 50.0%
GGACCATCCCTACCCTATTT+AGG - chr7_2:8296544-8296563 None:intergenic 50.0%
CCTGAGACATAAGGCTTGTC+AGG - chr7_2:8296590-8296609 None:intergenic 50.0%
! CCTGACAAGCCTTATGTCTC+AGG + chr7_2:8296587-8296606 Msa1047400:intron 50.0%
GCCTTATGTCTCAGGCCATA+TGG + chr7_2:8296595-8296614 Msa1047400:intron 50.0%
AGTTTAGCCCATCGACCTTG+TGG - chr7_2:8296650-8296669 None:intergenic 50.0%
TTTGTGAGAAGCTGGTCAGC+AGG + chr7_2:8296848-8296867 Msa1047400:intron 50.0%
AAGCTGGTCAGCAGGAATAG+TGG + chr7_2:8296856-8296875 Msa1047400:intron 50.0%
AGCTGGTCAGCAGGAATAGT+GGG + chr7_2:8296857-8296876 Msa1047400:intron 50.0%
!!! CCTGCCTTTTTTGTTGGCGT+GGG - chr7_2:8296906-8296925 None:intergenic 50.0%
!!! ACCTGCCTTTTTTGTTGGCG+TGG - chr7_2:8296907-8296926 None:intergenic 50.0%
GCACGGATGTACTGGACATT+GGG - chr7_2:8297078-8297097 None:intergenic 50.0%
GGTTGCATCCCTGTTAAAGC+TGG + chr7_2:8297172-8297191 Msa1047400:intron 50.0%
TCATCCCTCACCTTACATGC+CGG + chr7_2:8297628-8297647 Msa1047400:intron 50.0%
CTATTGGGTTACTCGAGCCA+GGG + chr7_2:8297726-8297745 Msa1047400:intron 50.0%
AACACAGACACCTCATGTCC+TGG - chr7_2:8297763-8297782 None:intergenic 50.0%
! CTCCCATGGATTGTCCAAAG+AGG - chr7_2:8298158-8298177 None:intergenic 50.0%
CTCTTTGGACAATCCATGGG+AGG + chr7_2:8298156-8298175 Msa1047400:CDS 50.0%
TAAAGCAACAGCTCCTCCCA+TGG - chr7_2:8298172-8298191 None:intergenic 50.0%
CAGATGACATGGTTCCTCCA+TGG + chr7_2:8298349-8298368 Msa1047400:CDS 50.0%
ATCTGAGCTAGCAACCATGG+AGG - chr7_2:8298366-8298385 None:intergenic 50.0%
CAATATCAGCCTCCCCATGA+AGG - chr7_2:8299379-8299398 None:intergenic 50.0%
ACCAGGACACACCTAATCCG+AGG + chr7_2:8294644-8294663 Msa1047400:intron 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - chr7_2:8294648-8294667 None:intergenic 55.0%
GCATGGACACTCCTCGGATT+AGG - chr7_2:8294658-8294677 None:intergenic 55.0%
! GCTGGTTTCCTGAAACTGCC+AGG + chr7_2:8295476-8295495 Msa1047400:five_prime_UTR 55.0%
! AAACACAGCTGCTTTCGGCC+TGG - chr7_2:8295497-8295516 None:intergenic 55.0%
! TGAGTTGACCTCAGGGGAGT+CGG + chr7_2:8296428-8296447 Msa1047400:intron 55.0%
AGCCCATCGACCTTGTGGTA+AGG - chr7_2:8296645-8296664 None:intergenic 55.0%
TGGGATGAAAGACCTGGCAG+CGG - chr7_2:8296887-8296906 None:intergenic 55.0%
TTGGCGTGGGATGAAAGACC+TGG - chr7_2:8296893-8296912 None:intergenic 55.0%
CCCACGCCAACAAAAAAGGC+AGG + chr7_2:8296903-8296922 Msa1047400:intron 55.0%
CAGGTTCATCAACCCTGCGA+GGG + chr7_2:8296922-8296941 Msa1047400:intron 55.0%
!! CTTCTAGAGTGCTCAGCCCT+GGG + chr7_2:8296956-8296975 Msa1047400:intron 55.0%
GGATGTACTGGACATTGGGC+AGG - chr7_2:8297074-8297093 None:intergenic 55.0%
GGCACGGATGTACTGGACAT+TGG - chr7_2:8297079-8297098 None:intergenic 55.0%
ATGTCCAGTACATCCGTGCC+AGG + chr7_2:8297079-8297098 Msa1047400:intron 55.0%
GCTATTGGGTTACTCGAGCC+AGG + chr7_2:8297725-8297744 Msa1047400:intron 55.0%
CTTGTCCAGTCCAGGACATG+AGG + chr7_2:8297750-8297769 Msa1047400:intron 55.0%
AGACACCTCATGTCCTGGAC+TGG - chr7_2:8297758-8297777 None:intergenic 55.0%
ATAGCGCCATCCCATGCCTT+AGG - chr7_2:8298213-8298232 None:intergenic 55.0%
GCTTTCGGCCTGGCAGTTTC+AGG - chr7_2:8295487-8295506 None:intergenic 60.0%
!! ATAGTGGGCTTTCCGCTGCC+AGG + chr7_2:8296872-8296891 Msa1047400:intron 60.0%
GCAGGTTCATCAACCCTGCG+AGG + chr7_2:8296921-8296940 Msa1047400:intron 60.0%
!! GCTTCTAGAGTGCTCAGCCC+TGG + chr7_2:8296955-8296974 Msa1047400:intron 60.0%
CAAGCCTGGCACGGATGTAC+TGG - chr7_2:8297086-8297105 None:intergenic 60.0%
CAGTACATCCGTGCCAGGCT+TGG + chr7_2:8297084-8297103 Msa1047400:intron 60.0%
CTAATCGGCCAAGCCTGGCA+CGG - chr7_2:8297095-8297114 None:intergenic 60.0%
GTGTGCTAATCGGCCAAGCC+TGG - chr7_2:8297100-8297119 None:intergenic 60.0%
TACAGTACAGGGTGGGGGCA+GGG + chr7_2:8297151-8297170 Msa1047400:intron 60.0%
! TCCTGGACTGGACAAGACCC+TGG - chr7_2:8297746-8297765 None:intergenic 60.0%
GTTGACCTCAGGGGAGTCGG+TGG + chr7_2:8296431-8296450 Msa1047400:intron 65.0%
!! TCGGTGGTGGTGCCGATCTG+AGG + chr7_2:8296447-8296466 Msa1047400:intron 65.0%
!! CGGTGGTGGTGCCGATCTGA+GGG + chr7_2:8296448-8296467 Msa1047400:intron 65.0%
!! GGTGGTGGTGCCGATCTGAG+GGG + chr7_2:8296449-8296468 Msa1047400:intron 65.0%
GTACAGTACAGGGTGGGGGC+AGG + chr7_2:8297150-8297169 Msa1047400:intron 65.0%
! GCCAGGGTCTTGTCCAGTCC+AGG + chr7_2:8297742-8297761 Msa1047400:intron 65.0%
TCGACGGCAGTCCACAACCG+CGG - chr7_2:8298759-8298778 None:intergenic 65.0%
GACCTCAGGGGAGTCGGTGG+TGG + chr7_2:8296434-8296453 Msa1047400:intron 70.0%
!! CACCACCACCGACTCCCCTG+AGG - chr7_2:8296439-8296458 None:intergenic 70.0%
!! GGTGGTGCCGATCTGAGGGG+AGG + chr7_2:8296452-8296471 Msa1047400:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 8293946 8299816 8293946 ID=Msa1047400;Name=Msa1047400
chr7_2 mRNA 8293946 8299816 8293946 ID=Msa1047400-mRNA-1;Parent=Msa1047400;Name=Msa1047400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=636|1|1|1|0.66|0.5|10|153|233
chr7_2 exon 8293946 8294116 8293946 ID=Msa1047400-mRNA-1:exon:2165;Parent=Msa1047400-mRNA-1
chr7_2 exon 8294240 8294420 8294240 ID=Msa1047400-mRNA-1:exon:2166;Parent=Msa1047400-mRNA-1
chr7_2 exon 8295280 8295309 8295280 ID=Msa1047400-mRNA-1:exon:2167;Parent=Msa1047400-mRNA-1
chr7_2 exon 8295433 8295604 8295433 ID=Msa1047400-mRNA-1:exon:2168;Parent=Msa1047400-mRNA-1
chr7_2 exon 8295628 8295812 8295628 ID=Msa1047400-mRNA-1:exon:2169;Parent=Msa1047400-mRNA-1
chr7_2 exon 8298124 8298254 8298124 ID=Msa1047400-mRNA-1:exon:2170;Parent=Msa1047400-mRNA-1
chr7_2 exon 8298345 8298482 8298345 ID=Msa1047400-mRNA-1:exon:2171;Parent=Msa1047400-mRNA-1
chr7_2 exon 8298723 8298821 8298723 ID=Msa1047400-mRNA-1:exon:2172;Parent=Msa1047400-mRNA-1
chr7_2 exon 8299356 8299669 8299356 ID=Msa1047400-mRNA-1:exon:2173;Parent=Msa1047400-mRNA-1
chr7_2 exon 8299747 8299816 8299747 ID=Msa1047400-mRNA-1:exon:2174;Parent=Msa1047400-mRNA-1
chr7_2 five_prime_UTR 8293946 8294116 8293946 ID=Msa1047400-mRNA-1:five_prime_utr;Parent=Msa1047400-mRNA-1
chr7_2 five_prime_UTR 8294240 8294420 8294240 ID=Msa1047400-mRNA-1:five_prime_utr;Parent=Msa1047400-mRNA-1
chr7_2 five_prime_UTR 8295280 8295309 8295280 ID=Msa1047400-mRNA-1:five_prime_utr;Parent=Msa1047400-mRNA-1
chr7_2 five_prime_UTR 8295433 8295604 8295433 ID=Msa1047400-mRNA-1:five_prime_utr;Parent=Msa1047400-mRNA-1
chr7_2 five_prime_UTR 8295628 8295709 8295628 ID=Msa1047400-mRNA-1:five_prime_utr;Parent=Msa1047400-mRNA-1
chr7_2 CDS 8295710 8295812 8295710 ID=Msa1047400-mRNA-1:cds;Parent=Msa1047400-mRNA-1
chr7_2 CDS 8298124 8298254 8298124 ID=Msa1047400-mRNA-1:cds;Parent=Msa1047400-mRNA-1
chr7_2 CDS 8298345 8298482 8298345 ID=Msa1047400-mRNA-1:cds;Parent=Msa1047400-mRNA-1
chr7_2 CDS 8298723 8298821 8298723 ID=Msa1047400-mRNA-1:cds;Parent=Msa1047400-mRNA-1
chr7_2 CDS 8299356 8299586 8299356 ID=Msa1047400-mRNA-1:cds;Parent=Msa1047400-mRNA-1
chr7_2 three_prime_UTR 8299587 8299669 8299587 ID=Msa1047400-mRNA-1:three_prime_utr;Parent=Msa1047400-mRNA-1
chr7_2 three_prime_UTR 8299747 8299816 8299747 ID=Msa1047400-mRNA-1:three_prime_utr;Parent=Msa1047400-mRNA-1
Gene Sequence

>Msa1047400

ATGGATTATCCAGGATTTGGTCTTTCAGAAGGTCTTCATTGCTATATTCCTAGTTTCGATTCGCTAGTTGATGATGTCATCGAGATTTACTCCAAGATCAAAGAAAATCCAGAATTGCAATCTCTTCCAAGCTTCCTCTTTGGACAATCCATGGGAGGAGCTGTTGCTTTAAAGATGCACCTTAAACAACCTAAGGCATGGGATGGCGCTATTCTTGTTGCACCAATGTGTAAAATTGCAGATGACATGGTTCCTCCATGGTTGCTAGCTCAGATACTCATTGGTATAGCTAATGTTCTACCAAAGCAAAAGTTAGTTCCACAGAAGAATTTAGCAGAGGCAGCTTTTAGAGATTTGAAGAAGAGAGAAATGACTGCCTATAATGTTGTTGCTTACAAAGATAAACCGCGGTTGTGGACTGCCGTCGAGATGCTTAAAACTACTCAAGAAATAGAAAAGAGATTGGAAGAAGTATCTTTGCCATTGCTAATCCTTCATGGGGAGGCTGATATTGTGACTGATCCCTCAGTGAGCAAAACATTTTACGAGAAAGCTAGCAGCACAGACAAGAAGCTTAAACTTTACAAGGATGCTTACCATTCTCTTCTTGAGGGTGAACCTGATGAAATGATAATCCAAGTTTTTAGTGATATCATTTTATGGCTTGATGACCACAGCTTGAAACATTCATCTTCTAAATAA
Protein sequence

>Msa1047400

MDYPGFGLSEGLHCYIPSFDSLVDDVIEIYSKIKENPELQSLPSFLFGQSMGGAVALKMHLKQPKAWDGAILVAPMCKIADDMVPPWLLAQILIGIANVLPKQKLVPQKNLAEAAFRDLKKREMTAYNVVAYKDKPRLWTAVEMLKTTQEIEKRLEEVSLPLLILHGEADIVTDPSVSKTFYEKASSTDKKLKLYKDAYHSLLEGEPDEMIIQVFSDIILWLDDHSLKHSSSK*