AlfalfaGEDB | Msa1234970

M. sativa cultivar zhongmu-4 / Msa1234970

KEGG: -
GO: -
PFAM: PF12070.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234970	XP_024628503.1	97.217	575	13	1	5	579	3	574	0.0	1153

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234970	sp\|Q8N9R8\|SCAI_HUMAN	34.336	565	319	13	21	561	62	598	8.83e-93	300

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234970	A0A072TME4	97.217	575	10	1	5	579	3	571	0.0	1152

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021210	Msa1234970	0.800256	1.569264e-48	-8.615850e-47
Msa0050380	Msa1234970	0.804877	1.749623e-49	-8.615850e-47
Msa0075880	Msa1234970	0.821649	3.608236e-53	-8.615850e-47
Msa0114430	Msa1234970	0.822578	2.198068e-53	-8.615850e-47
Msa0117710	Msa1234970	0.807093	5.981954e-50	-8.615850e-47
Msa0136490	Msa1234970	0.807196	5.688198e-50	-8.615850e-47
Msa0188460	Msa1234970	0.815483	9.032217e-52	-8.615850e-47
Msa0202720	Msa1234970	0.812333	4.468367e-51	-8.615850e-47
Msa0208090	Msa1234970	0.813421	2.581196e-51	-8.615850e-47
Msa0220740	Msa1234970	0.801453	8.938422e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234970	MtrunA17_Chr8g0337421	97.217	575	10	1	5	579	3	571	0.0	1152
Msa1234970	MtrunA17_Chr8g0381791	48.480	592	259	8	19	566	10	599	0.0	547

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234970	AT3G03570.1	58.007	612	195	7	7	568	3	602	0.0	711
Msa1234970	AT4G40050.1	46.000	600	264	8	17	564	6	597	0.0	525
Msa1234970	AT4G40050.2	46.370	427	179	5	17	394	6	431	3.10e-129	386

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Find 138 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAACTATACCTCAC+CGG	0.626934	8_2:+12770472	None:intergenic
AAAACCCAAACTTGTAAATG+TGG	0.570497	8_2:+12763253	None:intergenic
AAATAACTGGGGATTGGCGT+TGG	0.503199	8_2:-12764828	Msa1234970:CDS
AAATCGGAGAAATTGCGTCG+CGG	0.756221	8_2:-12770840	Msa1234970:CDS
AACCTGGAGCGTTGGTAATA+AGG	0.311040	8_2:+12771045	None:intergenic
AAGGTTGTTGTGGTGGAAAT+TGG	0.304615	8_2:-12770535	Msa1234970:CDS
AATAATGCCATTTCCAAAGA+AGG	0.444819	8_2:+12763152	None:intergenic
AATACCACATTTACAAGTTT+GGG	0.304767	8_2:-12763257	Msa1234970:three_prime_UTR
AATGCAGGAGCAGGATCTTC+TGG	0.343711	8_2:-12768212	Msa1234970:intron
AATTTGTGAGGAGCTTCCTT+TGG	0.408972	8_2:-12768380	Msa1234970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAGTCTACACACAATTA+TGG	-	chr8_2:12763474-12763493	Msa1234970:three_prime_UTR	30.0%
CATTGTCTACCTCATTATAA+TGG	+	chr8_2:12764033-12764052	None:intergenic	30.0%
CCTCTTTGATTGTAGAAATA+AGG	-	chr8_2:12764260-12764279	Msa1234970:intron	30.0%
TTACTGTCTGTAACATGTTA+TGG	-	chr8_2:12764695-12764714	Msa1234970:intron	30.0%
GTTCAAAACTTAGTCAGAAT+GGG	-	chr8_2:12764855-12764874	Msa1234970:CDS	30.0%
TTCAAAACTTAGTCAGAATG+GGG	-	chr8_2:12764856-12764875	Msa1234970:CDS	30.0%
ACATTTCATAGCTGTAAGTA+TGG	-	chr8_2:12764976-12764995	Msa1234970:intron	30.0%
GATTTGATACAAGAACTACT+GGG	+	chr8_2:12765037-12765056	None:intergenic	30.0%
TGATTTGATACAAGAACTAC+TGG	+	chr8_2:12765038-12765057	None:intergenic	30.0%
GCCTATTATACTAGTAATCT+AGG	-	chr8_2:12765179-12765198	Msa1234970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	12763133	12771281	12763133	ID=Msa1234970;Name=Msa1234970
chr8_2	mRNA	12763133	12771281	12763133	ID=Msa1234970-mRNA-1;Parent=Msa1234970;Name=Msa1234970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=100\|0.87\|0.88\|1\|1\|1\|9\|614\|579
chr8_2	exon	12763133	12763972	12763133	ID=Msa1234970-mRNA-1:exon:4975;Parent=Msa1234970-mRNA-1
chr8_2	exon	12764755	12764891	12764755	ID=Msa1234970-mRNA-1:exon:4974;Parent=Msa1234970-mRNA-1
chr8_2	exon	12765008	12765187	12765008	ID=Msa1234970-mRNA-1:exon:4973;Parent=Msa1234970-mRNA-1
chr8_2	exon	12765790	12765899	12765790	ID=Msa1234970-mRNA-1:exon:4972;Parent=Msa1234970-mRNA-1
chr8_2	exon	12768159	12768227	12768159	ID=Msa1234970-mRNA-1:exon:4971;Parent=Msa1234970-mRNA-1
chr8_2	exon	12768347	12768413	12768347	ID=Msa1234970-mRNA-1:exon:4970;Parent=Msa1234970-mRNA-1
chr8_2	exon	12769426	12769647	12769426	ID=Msa1234970-mRNA-1:exon:4969;Parent=Msa1234970-mRNA-1
chr8_2	exon	12770372	12770966	12770372	ID=Msa1234970-mRNA-1:exon:4968;Parent=Msa1234970-mRNA-1
chr8_2	exon	12771048	12771281	12771048	ID=Msa1234970-mRNA-1:exon:4967;Parent=Msa1234970-mRNA-1
chr8_2	five_prime_UTR	12771182	12771281	12771182	ID=Msa1234970-mRNA-1:five_prime_utr;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12771048	12771181	12771048	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12770372	12770966	12770372	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12769426	12769647	12769426	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12768347	12768413	12768347	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12768159	12768227	12768159	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12765790	12765899	12765790	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12765008	12765187	12765008	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12764755	12764891	12764755	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	CDS	12763747	12763972	12763747	ID=Msa1234970-mRNA-1:cds;Parent=Msa1234970-mRNA-1
chr8_2	three_prime_UTR	12763133	12763746	12763133	ID=Msa1234970-mRNA-1:three_prime_utr;Parent=Msa1234970-mRNA-1

Gene Sequence

>Msa1234970

ATGGCGCAACAGCAGCAACAACAACAACAGCTGAACAGCAACATCCCAGTAAGCGAAGTTTTCTGGACTCTCGTCGACAAAGCCGACAAAAAATTCTCCAAAATCAGAGACTTACCTTATTACCAACGCTCCAGACATGATACTTATTTCTGCAAGGTTTTCAAAGTCTACACACAATTATGGAAATTCCAACAAGAAAATCGCCAGAAACTAATTGAAGCAGGGTTGAAAAGATGGGAAATCGGAGAAATTGCGTCGCGGATTGGTCAATTGTATTTTGGACAATATATGAAAACTTCTGATTACAATTATTTATCAGAATCTTACATTTTCTATGAAGCGATATTCACGCGCGATTATTTCAGAGAGGGATTGTTTTCGGATGTTAATATTGCGAATAAGCAGTTGAGGTTTTTGGCGAGGTTTTTAACGGTGTGTTTGCTTTTGAATCGGAGGGAAATGTTGCAACAATTGGTTAATCAGCTGAAAGTGTTGGTTGATGAGTGTAAGAGAGTGTTTGTGGATAGTGATTTTAAGGAGTGGAAGGTTGTTGTGGTGGAAATTGGGAGGTTTTTGAAGGTTGATACGGGTTTTATGAATGTTAGACCGGTGAGGTATAGTTTGGTTTTGGATTCTCATCCTGATACTTTACCGCGTGTTCCTGTTGCTATCGCGAAGCGGAATTTGAAATTAAGAGATGCTGTGTTGAGTAGCTTCCATTATAATGAGGTTAAGTTTTCAGAGTTCACTATTGACACTTTTAGGATGCTTCAATGTTTAGAGTGGGAACCTAGTGGCTCATTTTACCAGTCTGGTGGTTCAAAACTTAGTCAGAATGGGGCAACTGGGACTGGTCGTATCAGTTACATACAAGATATTGCTGATCCTACGTTACCAGCAAACCCACGGAAAGCGATATTATACCGTCCTTCACTGACACATTTCATAGCTGTTCTTGCCACAATTTGTGAGGAGCTTCCTTTGGATGGTATTCTCCTTGTATATTTGTCAGCTTCAGGAGCAGGATCTTCTGGTGCCGGGAATAATGAATCTGGTTGCATAAACTTAGGTTCCCGTGGAGATAGAGGATCAAACTCCATATATCCATCGGACTTTCTACCGTTTACTAGAAGACCACTTCTTTTAATCATTGATAATGAGAACAGCAAAGCTTTTAAGGCAAGCCCTACTACTTCAGTCATAACTGAAGCAGAAAAAGGAGAGTCAGTGGCAATGCTTCTTTCTCCAAGCCGTTTGCCTCCTTTTGTGTCTGATTGCTCACATTCTTCAAATGGGAGCCTATTCACCATGTTTCTTACAGCTCCGCTACAAGCTTTCTGTTTGCTGCTAGGATTTTCAGGCACTGATATTGATTTGGACTTGTACAACAAAGCTGAAACACTGCTGTCATCATCATTAAATAACTGGGGATTGGCGTTGGCATCAACAGACACGCTTGATCCAGTTTGGGGACAGGTTTTAGGCGATCCCTTCATAAGGAGACTTCTTATGAGATTCATATTTTGCCAGACAGTGTTGACCTCGTATGCACCAGTTTATGATAAAAATGAATTCCTTCCAACATGTGTCCCTTCTCTTCCAACGCCTGTCCTAGCTCCATGCTGCTCGTATCAAAGTGTAATTCTGCAACTAGCTGGCATTTTTGGTGCAACTAAGCACTTCATCTTTTCTGAGGACGTTTCTCCTAAAAATACACTTCCAAACGTGGATCAGTTGTGA

Protein sequence

>Msa1234970

MAQQQQQQQQLNSNIPVSEVFWTLVDKADKKFSKIRDLPYYQRSRHDTYFCKVFKVYTQLWKFQQENRQKLIEAGLKRWEIGEIASRIGQLYFGQYMKTSDYNYLSESYIFYEAIFTRDYFREGLFSDVNIANKQLRFLARFLTVCLLLNRREMLQQLVNQLKVLVDECKRVFVDSDFKEWKVVVVEIGRFLKVDTGFMNVRPVRYSLVLDSHPDTLPRVPVAIAKRNLKLRDAVLSSFHYNEVKFSEFTIDTFRMLQCLEWEPSGSFYQSGGSKLSQNGATGTGRISYIQDIADPTLPANPRKAILYRPSLTHFIAVLATICEELPLDGILLVYLSASGAGSSGAGNNESGCINLGSRGDRGSNSIYPSDFLPFTRRPLLLIIDNENSKAFKASPTTSVITEAEKGESVAMLLSPSRLPPFVSDCSHSSNGSLFTMFLTAPLQAFCLLLGFSGTDIDLDLYNKAETLLSSSLNNWGLALASTDTLDPVWGQVLGDPFIRRLLMRFIFCQTVLTSYAPVYDKNEFLPTCVPSLPTPVLAPCCSYQSVILQLAGIFGATKHFIFSEDVSPKNTLPNVDQL*