AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417290 MtrunA17_Chr3g0114701 97.933 387 8 0 1 387 1 387 0.0 781
Msa0417290 MtrunA17_Chr1g0160181 67.018 379 120 1 1 379 10 383 0.0 512
Msa0417290 MtrunA17_Chr3g0114731 52.486 362 161 4 7 368 16 366 1.42e-136 395
Msa0417290 MtrunA17_Chr3g0114711 48.363 397 152 6 5 360 10 394 3.16e-125 367
Msa0417290 MtrunA17_Chr1g0177221 64.844 256 87 1 3 258 12 264 2.68e-118 344
Msa0417290 MtrunA17_Chr1g0160171 45.283 371 189 4 1 371 8 364 1.20e-113 337
Msa0417290 MtrunA17_Chr7g0255561 45.783 332 177 2 3 332 8 338 7.99e-110 327
Msa0417290 MtrunA17_Chr7g0255581 45.783 332 177 2 3 332 8 338 7.99e-110 327
Msa0417290 MtrunA17_Chr3g0114691 40.052 387 221 3 2 387 13 389 3.07e-109 325
Msa0417290 MtrunA17_Chr1g0182291 43.626 353 189 3 4 356 10 352 1.97e-108 322
Msa0417290 MtrunA17_Chr7g0263101 42.359 373 202 3 6 378 10 369 6.61e-106 317
Msa0417290 MtrunA17_Chr8g0354121 42.188 384 192 6 5 378 9 372 5.41e-102 307
Msa0417290 MtrunA17_Chr3g0081421 45.152 330 177 4 4 330 12 340 2.27e-100 303
Msa0417290 MtrunA17_Chr3g0081511 41.927 384 204 7 2 382 10 377 1.75e-98 298
Msa0417290 MtrunA17_Chr1g0186641 39.571 326 193 2 5 330 9 330 2.02e-79 248
Msa0417290 MtrunA17_Chr1g0186601 37.536 349 207 4 5 353 12 349 2.13e-79 248
Msa0417290 MtrunA17_Chr1g0186571 37.176 347 210 3 5 351 9 347 7.27e-78 244
Msa0417290 MtrunA17_Chr1g0186611 36.415 357 215 4 6 362 13 357 1.93e-77 243
Msa0417290 MtrunA17_Chr1g0186561 38.769 325 196 1 6 330 13 334 1.52e-76 241
Msa0417290 MtrunA17_Chr1g0171301 35.613 351 220 2 6 356 13 357 2.91e-76 240
Msa0417290 MtrunA17_Chr1g0155761 35.279 377 226 3 11 370 23 398 1.49e-71 229
Msa0417290 MtrunA17_Chr3g0142131 35.593 354 215 4 14 355 25 377 4.67e-71 228
Msa0417290 MtrunA17_Chr1g0184221 34.959 369 209 7 9 359 16 371 5.64e-69 221
Msa0417290 MtrunA17_Chr3g0129601 35.380 342 215 4 5 342 25 364 1.30e-68 220
Msa0417290 MtrunA17_Chr6g0463971 35.393 356 209 6 5 355 12 351 5.34e-67 216
Msa0417290 MtrunA17_Chr3g0129571 34.637 358 227 5 10 362 8 363 7.17e-66 213
Msa0417290 MtrunA17_Chr6g0483401 37.278 338 200 5 18 348 19 351 1.01e-65 213
Msa0417290 MtrunA17_Chr4g0050881 35.440 364 222 6 1 361 1 354 2.05e-63 206
Msa0417290 MtrunA17_Chr2g0278561 34.946 372 236 3 9 379 15 381 3.22e-63 207
Msa0417290 MtrunA17_Chr2g0284261 33.241 361 234 3 9 369 8 361 1.50e-61 202
Msa0417290 MtrunA17_Chr8g0383731 33.143 350 225 4 5 348 1 347 3.98e-61 201
Msa0417290 MtrunA17_Chr1g0164831 33.235 340 221 4 9 347 3 337 5.62e-61 200
Msa0417290 MtrunA17_Chr7g0271561 32.822 326 213 3 10 330 8 332 2.22e-60 199
Msa0417290 MtrunA17_Chr2g0278541 32.741 394 241 9 2 374 3 393 3.42e-60 199
Msa0417290 MtrunA17_Chr3g0129591 33.146 356 231 4 10 361 6 358 7.45e-60 197
Msa0417290 MtrunA17_Chr2g0278551 32.361 377 241 3 9 380 12 379 1.80e-59 197
Msa0417290 MtrunA17_Chr2g0290611 32.222 360 243 1 5 364 8 366 5.71e-58 193
Msa0417290 MtrunA17_Chr8g0334761 32.869 359 236 4 10 366 11 366 2.65e-57 191
Msa0417290 MtrunA17_Chr1g0172881 54.491 167 58 2 92 258 1 149 9.30e-55 177
Msa0417290 MtrunA17_Chr2g0332001 31.692 325 217 2 9 332 38 358 3.51e-54 184
Msa0417290 MtrunA17_Chr4g0051021 30.645 372 250 5 5 372 10 377 3.89e-54 183
Msa0417290 MtrunA17_Chr3g0126101 30.854 363 231 6 6 368 3 345 9.64e-53 179
Msa0417290 MtrunA17_Chr4g0059311 31.395 344 230 5 4 344 6 346 2.48e-52 177
Msa0417290 MtrunA17_Chr2g0310441 34.259 324 205 5 10 330 11 329 3.19e-52 178
Msa0417290 MtrunA17_Chr3g0129581 32.773 357 231 5 10 361 6 358 3.25e-52 177
Msa0417290 MtrunA17_Chr4g0050891 32.716 324 214 3 5 325 9 331 1.31e-51 176
Msa0417290 MtrunA17_Chr4g0050941 34.218 339 216 4 5 337 8 345 4.80e-51 175
Msa0417290 MtrunA17_Chr5g0413951 31.447 318 213 4 14 330 12 325 8.20e-50 171
Msa0417290 MtrunA17_Chr5g0413941 30.247 324 221 4 14 336 12 331 1.72e-49 170
Msa0417290 MtrunA17_Chr1g0160111 27.635 351 239 6 18 356 16 363 1.84e-48 168
Msa0417290 MtrunA17_Chr5g0413961 32.335 334 209 7 10 338 15 336 1.97e-48 167
Msa0417290 MtrunA17_Chr8g0334751 33.528 343 224 3 10 351 12 351 6.89e-48 166
Msa0417290 MtrunA17_Chr8g0334771 33.540 322 210 3 10 330 11 329 1.37e-47 166
Msa0417290 MtrunA17_Chr5g0408001 28.756 386 248 8 3 367 8 387 8.05e-47 164
Msa0417290 MtrunA17_Chr5g0407971 29.558 362 237 6 9 356 11 368 1.43e-46 163
Msa0417290 MtrunA17_Chr5g0408031 30.548 347 216 6 6 333 7 347 4.88e-46 162
Msa0417290 MtrunA17_Chr4g0073241 27.577 359 249 6 10 364 9 360 6.56e-45 159
Msa0417290 MtrunA17_Chr5g0408041 28.729 362 241 4 9 355 11 370 2.02e-44 158
Msa0417290 MtrunA17_Chr5g0413931 30.814 344 226 9 13 351 10 346 5.81e-44 155
Msa0417290 MtrunA17_Chr5g0413921 29.878 328 225 4 14 340 12 335 6.87e-44 155
Msa0417290 MtrunA17_Chr1g0150151 27.246 345 246 4 6 348 8 349 1.02e-42 152
Msa0417290 MtrunA17_Chr7g0227921 31.229 301 201 4 31 330 33 328 1.08e-42 152
Msa0417290 MtrunA17_Chr5g0428881 27.200 375 268 4 1 372 10 382 1.16e-42 153
Msa0417290 MtrunA17_Chr5g0407991 28.460 383 244 8 9 368 9 384 1.56e-42 152
Msa0417290 MtrunA17_Chr8g0369841 27.119 354 242 5 17 357 17 367 4.90e-41 149
Msa0417290 MtrunA17_Chr4g0050931 28.080 349 206 5 5 348 8 316 5.43e-40 144
Msa0417290 MtrunA17_Chr5g0404811 30.417 240 164 2 122 361 6 242 3.46e-36 132
Msa0417290 MtrunA17_Chr3g0126091 26.879 346 242 6 10 352 12 349 6.06e-36 134
Msa0417290 MtrunA17_Chr6g0451201 30.060 336 226 6 31 366 34 360 7.65e-36 134
Msa0417290 MtrunA17_Chr6g0451171 27.778 360 247 7 10 366 13 362 2.92e-35 132
Msa0417290 MtrunA17_Chr4g0051001 28.296 311 209 3 5 308 27 330 3.86e-35 132
Msa0417290 MtrunA17_Chr1g0172891 60.360 111 33 2 265 375 13 112 1.01e-34 124
Msa0417290 MtrunA17_Chr2g0278021 34.862 218 124 6 164 372 54 262 1.16e-33 126
Msa0417290 MtrunA17_Chr1g0177231 57.391 115 35 3 251 362 18 121 1.30e-33 121
Msa0417290 MtrunA17_Chr5g0441761 26.567 335 214 5 23 357 40 342 4.29e-33 126
Msa0417290 MtrunA17_Chr1g0182261 43.165 139 77 2 198 334 76 214 1.69e-31 119
Msa0417290 MtrunA17_Chr6g0451251 30.091 329 219 6 31 355 34 355 1.51e-30 120
Msa0417290 MtrunA17_Chr6g0451211 25.641 351 249 8 10 355 13 356 3.05e-30 119
Msa0417290 MtrunA17_Chr1g0211801 30.279 251 169 4 9 258 11 256 1.11e-29 115
Msa0417290 MtrunA17_Chr3g0084091 26.502 283 202 4 94 373 15 294 2.38e-29 115
Msa0417290 MtrunA17_Chr5g0429001 25.382 327 208 4 61 367 3 313 2.97e-29 115
Msa0417290 MtrunA17_Chr6g0451191 29.675 246 164 5 123 368 1 237 5.50e-29 112
Msa0417290 MtrunA17_Chr6g0451261 26.059 307 222 4 6 311 8 310 1.27e-28 118
Msa0417290 MtrunA17_Chr4g0056081 28.000 350 226 9 14 353 19 352 1.91e-27 111
Msa0417290 MtrunA17_Chr5g0399281 28.529 333 213 8 14 334 13 332 5.91e-25 104
Msa0417290 MtrunA17_Chr8g0334711 34.184 196 125 3 10 204 11 203 7.74e-23 95.5
Msa0417290 MtrunA17_Chr8g0334721 35.256 156 96 2 221 372 1 155 3.69e-22 92.0
Msa0417290 MtrunA17_Chr5g0404801 41.026 117 69 0 6 122 4 120 4.89e-20 85.1
Msa0417290 MtrunA17_Chr2g0278031 36.752 117 74 0 5 121 10 126 4.57e-13 65.9
Msa0417290 MtrunA17_Chr4g0050921 33.010 103 68 1 209 311 3 104 7.72e-13 65.1
Msa0417290 MtrunA17_Chr4g0021721 53.333 45 21 0 238 282 2 46 2.25e-12 61.6
Msa0417290 MtrunA17_Chr8g0372571 53.333 45 21 0 238 282 2 46 2.36e-12 62.0
Msa0417290 MtrunA17_Chr1g0211811 36.782 87 55 0 260 346 1 87 5.56e-12 61.6
Msa0417290 MtrunA17_Chr6g0451241 36.905 84 50 2 274 355 23 105 1.08e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417290 AT4G08290.1 47.541 366 182 4 3 368 6 361 2.37e-122 359
Msa0417290 AT2G39510.1 43.915 378 190 5 5 375 3 365 2.99e-106 318
Msa0417290 AT2G37460.1 40.374 374 209 2 5 378 10 369 6.64e-105 314
Msa0417290 AT1G21890.1 42.416 389 200 6 1 379 1 375 5.82e-103 310
Msa0417290 AT1G44800.1 40.860 372 205 5 2 371 3 361 1.19e-100 303
Msa0417290 AT4G08300.1 40.162 371 216 4 2 369 3 370 8.84e-96 291
Msa0417290 AT5G07050.1 41.317 334 189 3 3 330 11 343 1.73e-94 288
Msa0417290 AT2G40900.1 40.816 343 187 4 6 348 7 333 4.45e-94 287
Msa0417290 AT1G21890.2 45.570 316 163 3 1 308 1 315 7.66e-91 277
Msa0417290 AT4G08290.2 48.996 249 126 1 9 257 12 259 5.09e-86 263
Msa0417290 AT3G56620.1 40.867 323 182 3 6 327 7 321 3.77e-85 264
Msa0417290 AT2G37450.2 41.061 358 175 4 3 355 2 328 3.55e-84 260
Msa0417290 AT5G13670.1 36.885 366 212 5 6 364 4 357 1.44e-79 249
Msa0417290 AT1G75500.1 37.690 329 195 5 11 332 21 346 6.45e-71 228
Msa0417290 AT1G75500.2 37.690 329 195 5 11 332 21 346 6.45e-71 228
Msa0417290 AT2G37450.3 43.609 266 135 3 95 355 1 256 4.04e-66 211
Msa0417290 AT3G18200.2 35.608 337 206 5 14 346 39 368 4.21e-66 215
Msa0417290 AT3G53210.1 34.254 362 230 4 6 361 6 365 4.61e-64 209
Msa0417290 AT5G64700.1 34.211 342 217 5 5 339 3 343 5.32e-62 203
Msa0417290 AT2G37450.1 43.515 239 120 3 122 355 61 289 3.56e-56 186
Msa0417290 AT2G37450.1 46.667 60 32 0 3 62 2 61 4.99e-11 63.5
Msa0417290 AT4G30420.2 31.152 382 246 5 5 380 4 374 2.60e-55 187
Msa0417290 AT4G30420.1 31.622 370 236 5 17 380 6 364 6.15e-54 183
Msa0417290 AT1G09380.1 28.455 369 245 4 10 366 8 369 1.70e-53 182
Msa0417290 AT3G30340.1 30.959 365 235 6 9 370 10 360 2.52e-52 178
Msa0417290 AT1G68170.2 29.805 359 244 3 6 357 9 366 4.73e-51 175
Msa0417290 AT1G68170.1 30.199 351 237 3 14 357 7 356 7.91e-51 174
Msa0417290 AT4G28040.1 31.915 329 208 4 9 335 7 321 1.36e-50 174
Msa0417290 AT4G28040.5 31.915 329 208 4 9 335 7 321 1.36e-50 174
Msa0417290 AT4G28040.3 31.915 329 208 4 9 335 7 321 1.36e-50 174
Msa0417290 AT4G28040.4 31.915 329 208 4 9 335 7 321 1.36e-50 174
Msa0417290 AT4G28040.2 31.915 329 208 4 9 335 7 321 1.36e-50 174
Msa0417290 AT4G01440.1 32.026 306 205 2 35 340 35 337 2.59e-49 171
Msa0417290 AT3G53210.2 34.106 302 189 6 67 361 10 308 2.83e-49 169
Msa0417290 AT1G01070.1 32.941 340 209 8 31 367 37 360 8.25e-49 169
Msa0417290 AT1G11450.3 30.836 347 226 6 10 353 16 351 9.59e-49 169
Msa0417290 AT1G11450.5 32.588 313 197 6 44 353 6 307 1.25e-46 162
Msa0417290 AT1G25270.1 30.663 362 230 6 9 357 2 355 1.22e-45 160
Msa0417290 AT3G18200.1 35.802 243 145 5 108 346 3 238 2.18e-45 157
Msa0417290 AT1G11450.2 32.258 310 196 6 47 353 2 300 4.28e-45 157
Msa0417290 AT3G28050.1 30.601 366 221 9 10 355 12 364 1.76e-44 158
Msa0417290 AT5G45370.2 30.994 342 218 6 17 342 27 366 2.99e-44 157
Msa0417290 AT5G45370.4 30.994 342 218 6 17 342 27 366 2.99e-44 157
Msa0417290 AT1G43650.1 31.307 329 218 3 9 336 6 327 3.65e-44 156
Msa0417290 AT5G45370.1 30.699 329 212 4 17 342 27 342 4.17e-44 156
Msa0417290 AT1G11460.1 31.098 328 216 5 10 333 16 337 1.08e-43 155
Msa0417290 AT3G28130.2 29.155 343 234 4 14 352 17 354 1.29e-43 155
Msa0417290 AT4G01430.1 28.889 360 241 6 12 366 13 362 7.61e-43 153
Msa0417290 AT3G28130.5 30.916 262 180 1 91 352 8 268 2.35e-41 147
Msa0417290 AT3G28130.1 30.916 262 180 1 91 352 8 268 2.35e-41 147
Msa0417290 AT4G01440.3 31.183 279 189 2 30 308 30 305 2.99e-41 148
Msa0417290 AT3G45870.1 29.141 326 220 5 9 325 11 334 3.10e-41 149
Msa0417290 AT5G40230.1 29.670 364 230 7 6 356 17 367 3.34e-41 149
Msa0417290 AT3G53210.3 33.992 253 163 4 6 257 6 255 1.53e-40 144
Msa0417290 AT5G40240.2 30.321 343 229 5 6 343 30 367 2.00e-40 147
Msa0417290 AT5G40240.1 30.321 343 229 5 6 343 16 353 2.01e-40 147
Msa0417290 AT5G40240.3 30.321 343 229 5 6 343 16 353 2.01e-40 147
Msa0417290 AT1G01070.2 31.429 315 197 8 56 367 15 313 5.74e-40 144
Msa0417290 AT4G19185.1 30.539 334 207 6 17 332 28 354 2.95e-39 144
Msa0417290 AT5G40210.1 28.406 345 222 7 14 355 17 339 3.25e-39 143
Msa0417290 AT3G28100.1 28.955 335 229 4 4 334 8 337 8.88e-39 142
Msa0417290 AT1G70260.1 26.027 365 258 5 10 365 12 373 2.04e-38 142
Msa0417290 AT5G64700.2 32.558 258 168 4 5 257 3 259 4.87e-38 138
Msa0417290 AT1G11450.4 30.464 302 201 4 10 308 16 311 1.05e-37 139
Msa0417290 AT1G11450.1 31.970 269 169 6 88 353 2 259 9.15e-37 134
Msa0417290 AT3G28080.1 28.955 335 229 4 4 334 8 337 3.18e-36 135
Msa0417290 AT3G28080.5 30.579 242 167 1 93 334 8 248 3.00e-35 130
Msa0417290 AT3G28080.7 30.579 242 167 1 93 334 8 248 3.00e-35 130
Msa0417290 AT3G28080.8 30.579 242 167 1 93 334 8 248 3.00e-35 130
Msa0417290 AT3G28080.6 30.579 242 167 1 93 334 8 248 3.00e-35 130
Msa0417290 AT5G47470.2 30.938 320 209 5 14 330 62 372 7.34e-35 132
Msa0417290 AT5G47470.3 30.938 320 209 5 14 330 62 372 7.69e-35 132
Msa0417290 AT5G47470.1 30.938 320 209 5 14 330 34 344 8.87e-35 132
Msa0417290 AT3G45870.8 28.155 309 211 5 9 308 11 317 9.29e-35 131
Msa0417290 AT3G28070.1 27.966 354 245 5 4 352 11 359 1.12e-34 131
Msa0417290 AT3G28070.2 29.502 261 182 2 93 352 8 267 1.41e-34 129
Msa0417290 AT3G28080.2 30.579 242 167 1 93 334 89 329 3.15e-34 130
Msa0417290 AT4G01450.2 32.166 314 204 3 30 342 30 335 3.62e-34 130
Msa0417290 AT3G28130.3 31.304 230 157 1 123 352 1 229 1.98e-33 125
Msa0417290 AT4G15540.1 28.571 350 227 6 6 347 13 347 6.20e-33 126
Msa0417290 AT4G15540.2 28.571 350 227 6 6 347 13 347 6.20e-33 126
Msa0417290 AT4G01430.2 29.000 300 206 4 12 308 13 308 2.28e-32 124
Msa0417290 AT3G30340.2 30.566 265 174 5 9 270 10 267 3.40e-32 123
Msa0417290 AT4G01440.5 30.303 231 158 2 110 340 2 229 3.72e-32 122
Msa0417290 AT4G01440.2 30.303 231 158 2 110 340 2 229 3.72e-32 122
Msa0417290 AT4G01450.1 31.429 280 183 3 30 308 30 301 1.02e-31 123
Msa0417290 AT4G01440.4 32.075 212 141 2 35 246 35 243 1.26e-31 121
Msa0417290 AT4G19185.2 30.303 264 159 6 87 332 20 276 2.93e-30 119
Msa0417290 AT4G01450.4 32.701 211 134 2 30 239 30 233 2.28e-29 115
Msa0417290 AT5G45370.6 30.268 261 164 6 93 337 1 259 2.31e-29 115
Msa0417290 AT5G45370.5 30.268 261 164 6 93 337 1 259 2.31e-29 115
Msa0417290 AT1G60050.1 24.332 374 256 7 10 368 13 374 3.90e-29 116
Msa0417290 AT3G28080.9 30.189 212 147 1 123 334 1 211 1.02e-27 109
Msa0417290 AT4G16620.1 28.788 330 218 7 35 356 37 357 1.14e-27 112
Msa0417290 AT4G01450.3 34.043 188 116 2 30 216 30 210 5.94e-27 107
Msa0417290 AT3G45870.9 28.302 265 175 6 3 258 9 267 1.08e-26 108
Msa0417290 AT3G28070.5 29.004 231 162 2 123 352 1 230 1.29e-26 106
Msa0417290 AT4G24980.1 26.384 307 157 4 24 330 1 238 6.86e-26 105
Msa0417290 AT3G45870.5 29.224 219 144 5 116 325 43 259 2.25e-24 102
Msa0417290 AT3G28070.3 26.861 309 217 4 4 308 11 314 5.24e-24 101
Msa0417290 AT3G28130.4 28.395 243 166 3 14 252 17 255 8.40e-24 99.8
Msa0417290 AT5G45370.3 30.213 235 146 6 124 342 74 306 8.55e-23 98.2
Msa0417290 AT1G43650.2 30.579 242 160 3 17 257 14 248 1.81e-22 96.3
Msa0417290 AT3G28080.3 25.970 335 185 6 4 334 8 283 2.71e-21 93.6
Msa0417290 AT4G01430.3 27.039 233 158 4 138 366 1 225 4.49e-21 91.3
Msa0417290 AT3G28100.3 27.668 253 175 3 4 252 8 256 8.90e-21 91.3
Msa0417290 AT4G16620.4 29.368 269 174 6 95 356 1 260 1.33e-20 90.9
Msa0417290 AT4G16620.2 29.368 269 174 6 95 356 1 260 1.33e-20 90.9
Msa0417290 AT3G28080.4 26.446 242 123 3 93 334 8 194 2.72e-20 89.0
Msa0417290 AT3G45870.2 33.333 144 94 2 182 325 42 183 3.34e-19 86.3
Msa0417290 AT3G45870.6 27.723 202 135 5 116 308 43 242 2.50e-18 84.3
Msa0417290 AT3G45870.7 27.723 202 135 5 116 308 43 242 2.50e-18 84.3
Msa0417290 AT4G16620.3 31.472 197 129 5 40 234 41 233 6.48e-17 80.5
Msa0417290 AT3G28100.2 28.251 223 152 3 4 222 8 226 9.71e-16 77.0
Msa0417290 AT3G28130.6 28.718 195 131 3 14 204 17 207 3.05e-15 74.7

Find 109 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATCAACATATATTTA+AGG 0.144696 3_2:+64412144 None:intergenic
TTTAATGATGACAGTATTAT+TGG 0.155817 3_2:-64412771 Msa0417290:intron
ACTTCATTTGTTAGAAATTT+AGG 0.159464 3_2:-64412227 Msa0417290:three_prime_UTR
ATATCGTTACTTTCATTTCT+AGG 0.186256 3_2:+64412603 None:intergenic
TGTCATTATCTCTTTGAAAA+TGG 0.218801 3_2:+64412478 None:intergenic
CTATTGTTGGCTGTTCAATT+TGG 0.229434 3_2:-64414508 Msa0417290:CDS
AATTCTCATGCTTGGGCTCT+TGG 0.266006 3_2:-64413230 Msa0417290:CDS
TGATCAATGCTTTGCTCTGC+TGG 0.278960 3_2:-64414044 Msa0417290:CDS
GCAACTTGGGTTTGTTTCAT+TGG 0.281459 3_2:-64413296 Msa0417290:CDS
ACCGGTGACCGGTGGATCAT+AGG 0.285377 3_2:-64413528 Msa0417290:CDS
GACTTGGGAGTATTCATTAA+AGG 0.297148 3_2:-64412355 Msa0417290:three_prime_UTR
TGTTACTAGAAAGAGGAATT+TGG 0.305169 3_2:-64412429 Msa0417290:three_prime_UTR
TTCCTCCTCATTGGCTGTGC+TGG 0.308501 3_2:-64413498 Msa0417290:CDS
GAAAGAGGAATTTGGCCATT+TGG 0.314426 3_2:-64412421 Msa0417290:three_prime_UTR
TAGAATCACAAACCACAAAA+TGG 0.322143 3_2:+64412302 None:intergenic
ATCGGCACCATTGTAACATT+TGG 0.331344 3_2:-64413651 Msa0417290:CDS
CTAATTGCTCATTTAATTAG+TGG 0.336095 3_2:-64412389 Msa0417290:three_prime_UTR
CTCATGCTTGGGCTCTTGGT+TGG 0.336847 3_2:-64413226 Msa0417290:CDS
GGAGCCATAGTGGTTGTTCT+TGG 0.346101 3_2:-64412750 Msa0417290:CDS
TTAAAAGCAGTTACGATAAC+TGG 0.354095 3_2:+64412941 None:intergenic
TATGATCATCGTAACGGCTT+TGG 0.354927 3_2:-64412909 Msa0417290:CDS
CACCGATGTCTCTCGCAACT+TGG 0.358711 3_2:-64413310 Msa0417290:CDS
TCATGCTTGGGCTCTTGGTT+GGG 0.362140 3_2:-64413225 Msa0417290:CDS
TGCAATGAGTCCTCCTTTGT+AGG 0.363448 3_2:+64412657 None:intergenic
GCTGTTCAATTTGGTTCTGC+TGG 0.366885 3_2:-64414499 Msa0417290:CDS
TTGATTAAATAATATTGTTA+AGG 0.369440 3_2:-64412131 Msa0417290:three_prime_UTR
CGATATTAATGAAGCTCAAT+TGG 0.371801 3_2:-64412586 Msa0417290:CDS
AGTGGTCACTTGTTGGGACT+TGG 0.380399 3_2:-64412371 Msa0417290:three_prime_UTR
ACTGGAACACATGAAGATTA+AGG 0.386490 3_2:-64413697 Msa0417290:CDS
TTAATTAGTGGTCACTTGTT+GGG 0.392208 3_2:-64412377 Msa0417290:three_prime_UTR
TTTAATTAGTGGTCACTTGT+TGG 0.397332 3_2:-64412378 Msa0417290:three_prime_UTR
AGCGCCACAATTCTCATGCT+TGG 0.400337 3_2:-64413238 Msa0417290:CDS
GATCAATGCTTTGCTCTGCT+GGG 0.413981 3_2:-64414043 Msa0417290:CDS
GAAACACTAACCGCGTAAGC+TGG 0.419739 3_2:+64413185 None:intergenic
GGGACATGTTTCCTCCTCAT+TGG 0.423890 3_2:-64413507 Msa0417290:CDS
ATTTGGAGGAACATTGCTAA+TGG 0.425413 3_2:-64413634 Msa0417290:CDS
GGTAAACAATGAAGACATAA+TGG 0.433475 3_2:+64414434 None:intergenic
AAAGCCATATCTACTATTGT+TGG 0.439151 3_2:-64414521 Msa0417290:CDS
TGGACTTTATCTAGTTGTGT+GGG 0.445412 3_2:-64412730 Msa0417290:CDS
ACAGCCAACAATAGTAGATA+TGG 0.445663 3_2:+64414517 None:intergenic
TAAAAGAGAGACTCAAAAGA+TGG 0.446644 3_2:-64414563 Msa0417290:exon
GCGCCACAATTCTCATGCTT+GGG 0.446823 3_2:-64413237 Msa0417290:CDS
GTAAAAGAAGATGTAATAGA+TGG 0.452324 3_2:+64412250 None:intergenic
GCCATGGATGCTATCAAGAA+AGG 0.462957 3_2:-64414463 Msa0417290:CDS
GTGGTCACTTGTTGGGACTT+GGG 0.463759 3_2:-64412370 Msa0417290:three_prime_UTR
AAACACTAACCGCGTAAGCT+GGG 0.471232 3_2:+64413186 None:intergenic
TCCTCCTTTGTAGGTGAGGA+TGG 0.474654 3_2:+64412666 None:intergenic
AAGTCCAAGAACAACCACTA+TGG 0.477774 3_2:+64412746 None:intergenic
CCGGTGACCGGTGGATCATA+GGG 0.478455 3_2:-64413527 Msa0417290:CDS
AGGAATTTGGCCATTTGGCA+TGG 0.479726 3_2:-64412416 Msa0417290:three_prime_UTR
CTGGCGGGTAGCATGGCTAA+TGG 0.480297 3_2:+64413572 None:intergenic
CCTTCGCGTTTCATCTAGAA+AGG 0.485270 3_2:-64414381 Msa0417290:intron
CAGTATTATTGGAGCCATAG+TGG 0.487924 3_2:-64412760 Msa0417290:CDS
GTTGCGAGAGACATCGGTGC+AGG 0.489540 3_2:+64413314 None:intergenic
TTACAGCAGCGATGGCATTA+CGG 0.493658 3_2:+64414413 None:intergenic
TTACAGGGAATAGTTACATC+AGG 0.494182 3_2:-64413007 Msa0417290:intron
GCCTTTCTTGATAGCATCCA+TGG 0.499872 3_2:+64414462 None:intergenic
AGGGTACTTTCTCAACGTTA+TGG 0.500304 3_2:+64413334 None:intergenic
ACCGATGTCTCTCGCAACTT+GGG 0.501066 3_2:-64413309 Msa0417290:CDS
TTGTATAAACAGACGTTGAT+CGG 0.507901 3_2:-64412506 Msa0417290:three_prime_UTR
TCATTTCTAGGAGCTGTAAC+CGG 0.508308 3_2:+64412615 None:intergenic
ATGATCCACCGGTCACCGGT+GGG 0.508383 3_2:+64413531 None:intergenic
GCAGTATTACATACAAGGTC+TGG 0.510999 3_2:-64412981 Msa0417290:CDS
GGCAGAAATTAAATGTGTCT+TGG 0.512162 3_2:-64412531 Msa0417290:exon
CCCTATGATCCACCGGTCAC+CGG 0.512612 3_2:+64413527 None:intergenic
TTGGACTTTATCTAGTTGTG+TGG 0.512670 3_2:-64412731 Msa0417290:CDS
GGCACCATTGTAACATTTGG+AGG 0.513427 3_2:-64413648 Msa0417290:CDS
ATCAATGCTTTGCTCTGCTG+GGG 0.531569 3_2:-64414042 Msa0417290:CDS
TGAGCGACCCCACCGGTGAC+CGG 0.533275 3_2:-64413539 Msa0417290:CDS
ATGCATGTGTTACTAGAAAG+AGG 0.534032 3_2:-64412436 Msa0417290:three_prime_UTR
AATTAGTGCTCCATGCCAAA+TGG 0.537015 3_2:+64412406 None:intergenic
TTTCAGGCTGGCGGGTAGCA+TGG 0.537593 3_2:+64413565 None:intergenic
AATACACGGACAGACATCTT+CGG 0.538912 3_2:+64414234 None:intergenic
GACCTCACAACACTAACTAC+AGG 0.541490 3_2:+64413597 None:intergenic
TAACCGGTAGCTGCTGCTGT+TGG 0.542229 3_2:+64412631 None:intergenic
AAAAGCCAGCACAGCCAATG+AGG 0.542757 3_2:+64413493 None:intergenic
TATGATCCACCGGTCACCGG+TGG 0.544663 3_2:+64413530 None:intergenic
TGGTGCACTTCAAAGCTTCG+TGG 0.547717 3_2:-64413276 Msa0417290:CDS
CACAAAAGTAACAGAGGGCG+CGG 0.556408 3_2:+64413976 None:intergenic
CGCAAACACAAAAGTAACAG+AGG 0.561929 3_2:+64413970 None:intergenic
AGCTAACGTTACAGCAGCGA+TGG 0.569797 3_2:+64414405 None:intergenic
GCAATGTGAAATTGCTAATG+TGG 0.571756 3_2:+64414602 None:intergenic
AAAAGAGAGACTCAAAAGAT+GGG 0.585764 3_2:-64414562 Msa0417290:exon
TGAGTCCTCCTTTGTAGGTG+AGG 0.587096 3_2:+64412662 None:intergenic
AGACCAACAGCAGCAGCTAC+CGG 0.590694 3_2:-64412634 Msa0417290:CDS
GGACTTTATCTAGTTGTGTG+GGG 0.592458 3_2:-64412729 Msa0417290:CDS
ACTCTTTGCCCCAGCTTACG+CGG 0.595828 3_2:-64413195 Msa0417290:intron
GAGCCCAAGCATGAGAATTG+TGG 0.596528 3_2:+64413234 None:intergenic
GAAAATGTGAGCGACCCCAC+CGG 0.598172 3_2:-64413546 Msa0417290:CDS
AACATGTCCCTATGATCCAC+CGG 0.601007 3_2:+64413520 None:intergenic
AACACTAACCGCGTAAGCTG+GGG 0.606336 3_2:+64413187 None:intergenic
ACCCAAGTTGCGAGAGACAT+CGG 0.608909 3_2:+64413308 None:intergenic
AGCCAGCACAGCCAATGAGG+AGG 0.610147 3_2:+64413496 None:intergenic
GGAGTGCAGTATTACATACA+AGG 0.611210 3_2:-64412986 Msa0417290:CDS
TATGCCATCCTCACCTACAA+AGG 0.612374 3_2:-64412670 Msa0417290:CDS
GCGACCCCACCGGTGACCGG+TGG 0.613101 3_2:-64413536 Msa0417290:CDS
TGTTCCTCCAAATGTTACAA+TGG 0.620453 3_2:+64413644 None:intergenic
TGATCCACCGGTCACCGGTG+GGG 0.620513 3_2:+64413532 None:intergenic
GCAAACACAAAAGTAACAGA+GGG 0.623135 3_2:+64413971 None:intergenic
CCTTTCTAGATGAAACGCGA+AGG 0.624622 3_2:+64414381 None:intergenic
TTGCTAATGGCTCTGTACAA+AGG 0.625645 3_2:-64413621 Msa0417290:CDS
TTGCGAGAGACATCGGTGCA+GGG 0.646982 3_2:+64413315 None:intergenic
GCCATCCTCACCTACAAAGG+AGG 0.647252 3_2:-64412667 Msa0417290:CDS
CTTTCTAGATGAAACGCGAA+GGG 0.653408 3_2:+64414382 None:intergenic
GTCCTGTAGTTAGTGTTGTG+AGG 0.655305 3_2:-64413599 Msa0417290:CDS
AGACTCAAAAGATGGGTGCG+TGG 0.675468 3_2:-64414555 Msa0417290:exon
GGTACGTATGATCATCGTAA+CGG 0.679747 3_2:-64412915 Msa0417290:CDS
GTTACGATGATCATACGTAC+CGG 0.684765 3_2:+64412917 None:intergenic
CACAGCTGACAAGAACGACG+CGG 0.752986 3_2:+64414006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTTCATTTTGAAA+TGG - chr3_2:64413290-64413309 Msa0417290:CDS 10.0%
!! ATTTAATCAACATATATTTA+AGG + chr3_2:64414596-64414615 None:intergenic 10.0%
!! TTGATTAAATAATATTGTTA+AGG - chr3_2:64414606-64414625 Msa0417290:five_prime_UTR 10.0%
!!! ATTTTTGCTTATATTTTGTT+AGG - chr3_2:64412436-64412455 Msa0417290:three_prime_UTR 15.0%
!! GGTTAATGTAAAAAAATAAA+GGG + chr3_2:64412933-64412952 None:intergenic 15.0%
!! TGGTTAATGTAAAAAAATAA+AGG + chr3_2:64412934-64412953 None:intergenic 15.0%
!! AACAAAAAAAAATGTCTATA+AGG - chr3_2:64412992-64413011 Msa0417290:CDS 15.0%
!! ACAAAAAAAAATGTCTATAA+GGG - chr3_2:64412993-64413012 Msa0417290:CDS 15.0%
!!! TATTTGGTCTAAAATTTGAA+TGG + chr3_2:64412397-64412416 None:intergenic 20.0%
!!! AAATATGTGTTTCTATGTTT+TGG - chr3_2:64412467-64412486 Msa0417290:three_prime_UTR 20.0%
!!! ACATAATCTCTAAAAATACA+CGG + chr3_2:64412520-64412539 None:intergenic 20.0%
!!! ATTTTTAGAGATTATGTTAC+TGG - chr3_2:64412523-64412542 Msa0417290:exon 20.0%
!! ATTTATAATGCAATACCTTT+CGG - chr3_2:64412609-64412628 Msa0417290:CDS 20.0%
!! AAAAAAATAAAGGGTTTAGA+GGG + chr3_2:64412924-64412943 None:intergenic 20.0%
!! TAAAAAAATAAAGGGTTTAG+AGG + chr3_2:64412925-64412944 None:intergenic 20.0%
!!! TTTCATTTTTTTTGATAAGC+TGG + chr3_2:64412964-64412983 None:intergenic 20.0%
!! GGGATGTTAATTTATTAAAT+TGG - chr3_2:64413013-64413032 Msa0417290:intron 20.0%
!! TTTAATGATGACAGTATTAT+TGG - chr3_2:64413966-64413985 Msa0417290:CDS 20.0%
!!! ACTTCATTTGTTAGAAATTT+AGG - chr3_2:64414510-64414529 Msa0417290:CDS 20.0%
!! TCTAAAATTTGAATGGAAGA+GGG + chr3_2:64412390-64412409 None:intergenic 25.0%
! TCAAATAAAGTTAGCGTATT+TGG + chr3_2:64412413-64412432 None:intergenic 25.0%
! GTTAAATGAACCATATATTG+CGG - chr3_2:64412843-64412862 Msa0417290:intron 25.0%
! ATTTATTAAATTGGACAGAC+TGG - chr3_2:64413022-64413041 Msa0417290:intron 25.0%
! GCAACATATATGTATATGTT+TGG - chr3_2:64413358-64413377 Msa0417290:intron 25.0%
!! GTTTAATGTGATGATTTTGT+AGG - chr3_2:64413380-64413399 Msa0417290:intron 25.0%
!!! GTTAGTGTTTCGTTTTTTTA+TGG - chr3_2:64413564-64413583 Msa0417290:CDS 25.0%
! TAATAATCACTCACAAGAAA+AGG + chr3_2:64413713-64413732 None:intergenic 25.0%
!!! ATTTTGAGCTTTGTATTCTT+TGG + chr3_2:64414039-64414058 None:intergenic 25.0%
!! ATATCGTTACTTTCATTTCT+AGG + chr3_2:64414137-64414156 None:intergenic 25.0%
!! TGTCATTATCTCTTTGAAAA+TGG + chr3_2:64414262-64414281 None:intergenic 25.0%
! CTAATTGCTCATTTAATTAG+TGG - chr3_2:64414348-64414367 Msa0417290:intron 25.0%
! GTAAAAGAAGATGTAATAGA+TGG + chr3_2:64414490-64414509 None:intergenic 25.0%
TAAAAGAGAGACTCAAAAGA+TGG - chr3_2:64412174-64412193 Msa0417290:three_prime_UTR 30.0%
AAAAGAGAGACTCAAAAGAT+GGG - chr3_2:64412175-64412194 Msa0417290:three_prime_UTR 30.0%
AAAGCCATATCTACTATTGT+TGG - chr3_2:64412216-64412235 Msa0417290:three_prime_UTR 30.0%
GGTAAACAATGAAGACATAA+TGG + chr3_2:64412306-64412325 None:intergenic 30.0%
! GTCTAAAATTTGAATGGAAG+AGG + chr3_2:64412391-64412410 None:intergenic 30.0%
!!! TATGTTTTGGCAGGAAAATT+AGG - chr3_2:64412480-64412499 Msa0417290:three_prime_UTR 30.0%
! TTGCATTTTACCGCAATATA+TGG + chr3_2:64412856-64412875 None:intergenic 30.0%
TAACATTGCAACTACAATAG+TGG + chr3_2:64412889-64412908 None:intergenic 30.0%
GCATGTCAAGCAAAAATAAT+CGG - chr3_2:64413068-64413087 Msa0417290:intron 30.0%
AACTCGAAAGTTGAATTCTA+TGG + chr3_2:64413596-64413615 None:intergenic 30.0%
TTCTTGTGAGTGATTATTAC+AGG - chr3_2:64413714-64413733 Msa0417290:intron 30.0%
TCTTGTGAGTGATTATTACA+GGG - chr3_2:64413715-64413734 Msa0417290:intron 30.0%
AGGTCTGGTTATAAAAACTA+TGG - chr3_2:64413771-64413790 Msa0417290:intron 30.0%
GGTCTGGTTATAAAAACTAT+GGG - chr3_2:64413772-64413791 Msa0417290:intron 30.0%
TTAAAAGCAGTTACGATAAC+TGG + chr3_2:64413799-64413818 None:intergenic 30.0%
!! TATCGTAACTGCTTTTAATC+CGG - chr3_2:64413801-64413820 Msa0417290:intron 30.0%
CGATATTAATGAAGCTCAAT+TGG - chr3_2:64414151-64414170 Msa0417290:intron 30.0%
TTGTATAAACAGACGTTGAT+CGG - chr3_2:64414231-64414250 Msa0417290:CDS 30.0%
TGTTACTAGAAAGAGGAATT+TGG - chr3_2:64414308-64414327 Msa0417290:intron 30.0%
TTTAATTAGTGGTCACTTGT+TGG - chr3_2:64414359-64414378 Msa0417290:intron 30.0%
TTAATTAGTGGTCACTTGTT+GGG - chr3_2:64414360-64414379 Msa0417290:intron 30.0%
!! AAAAAGTGTGATCCATTTTG+TGG - chr3_2:64414423-64414442 Msa0417290:CDS 30.0%
TAGAATCACAAACCACAAAA+TGG + chr3_2:64414438-64414457 None:intergenic 30.0%
GCAATGTGAAATTGCTAATG+TGG + chr3_2:64412138-64412157 None:intergenic 35.0%
! AGTCTCTCTTTTACTCTCTT+GGG + chr3_2:64412167-64412186 None:intergenic 35.0%
ACAGCCAACAATAGTAGATA+TGG + chr3_2:64412223-64412242 None:intergenic 35.0%
! CTATTGTTGGCTGTTCAATT+TGG - chr3_2:64412229-64412248 Msa0417290:three_prime_UTR 35.0%
!! TGGTATGTTCATTTTTGCCA+TGG - chr3_2:64412258-64412277 Msa0417290:three_prime_UTR 35.0%
!!! ATGTGTTTCTATGTTTTGGC+AGG - chr3_2:64412471-64412490 Msa0417290:three_prime_UTR 35.0%
AGTTTCTTTCTTGTACCGAA+AGG + chr3_2:64412627-64412646 None:intergenic 35.0%
GCAAACACAAAAGTAACAGA+GGG + chr3_2:64412769-64412788 None:intergenic 35.0%
!!! CTCTGTTACTTTTGTGTTTG+CGG - chr3_2:64412768-64412787 Msa0417290:intron 35.0%
TTTGATAAGCTGGCATTTGA+TGG + chr3_2:64412954-64412973 None:intergenic 35.0%
ACTGGAACACATGAAGATTA+AGG - chr3_2:64413040-64413059 Msa0417290:intron 35.0%
TGTTCCTCCAAATGTTACAA+TGG + chr3_2:64413096-64413115 None:intergenic 35.0%
ATTTGGAGGAACATTGCTAA+TGG - chr3_2:64413103-64413122 Msa0417290:intron 35.0%
! TTCTGCGTTTTACATATTGC+AGG - chr3_2:64413265-64413284 Msa0417290:CDS 35.0%
TTACAGGGAATAGTTACATC+AGG - chr3_2:64413730-64413749 Msa0417290:intron 35.0%
CAAGAAAAAGTTGTTCAGAG+AGG + chr3_2:64413864-64413883 None:intergenic 35.0%
!! CTCTCTGAACAACTTTTTCT+TGG - chr3_2:64413862-64413881 Msa0417290:intron 35.0%
!! CTGAACAACTTTTTCTTGGA+AGG - chr3_2:64413866-64413885 Msa0417290:intron 35.0%
TTGGACTTTATCTAGTTGTG+TGG - chr3_2:64414006-64414025 Msa0417290:CDS 35.0%
TGGACTTTATCTAGTTGTGT+GGG - chr3_2:64414007-64414026 Msa0417290:CDS 35.0%
CACAGTGAAGAAAAATGTGA+TGG - chr3_2:64414179-64414198 Msa0417290:intron 35.0%
GAAGAAAAATGTGATGGTTG+TGG - chr3_2:64414185-64414204 Msa0417290:intron 35.0%
GGCAGAAATTAAATGTGTCT+TGG - chr3_2:64414206-64414225 Msa0417290:CDS 35.0%
! ATGCATGTGTTACTAGAAAG+AGG - chr3_2:64414301-64414320 Msa0417290:intron 35.0%
!! GACTTGGGAGTATTCATTAA+AGG - chr3_2:64414382-64414401 Msa0417290:CDS 35.0%
! GAGTCTCTCTTTTACTCTCT+TGG + chr3_2:64412168-64412187 None:intergenic 40.0%
CTTTCTAGATGAAACGCGAA+GGG + chr3_2:64412358-64412377 None:intergenic 40.0%
AATACACGGACAGACATCTT+CGG + chr3_2:64412506-64412525 None:intergenic 40.0%
CGCAAACACAAAAGTAACAG+AGG + chr3_2:64412770-64412789 None:intergenic 40.0%
ATCGGCACCATTGTAACATT+TGG - chr3_2:64413086-64413105 Msa0417290:intron 40.0%
! TTGCTAATGGCTCTGTACAA+AGG - chr3_2:64413116-64413135 Msa0417290:intron 40.0%
! AGGGTACTTTCTCAACGTTA+TGG + chr3_2:64413406-64413425 None:intergenic 40.0%
! GCAACTTGGGTTTGTTTCAT+TGG - chr3_2:64413441-64413460 Msa0417290:intron 40.0%
GGAGTGCAGTATTACATACA+AGG - chr3_2:64413751-64413770 Msa0417290:intron 40.0%
GCAGTATTACATACAAGGTC+TGG - chr3_2:64413756-64413775 Msa0417290:intron 40.0%
GTTACGATGATCATACGTAC+CGG + chr3_2:64413823-64413842 None:intergenic 40.0%
GGTACGTATGATCATCGTAA+CGG - chr3_2:64413822-64413841 Msa0417290:intron 40.0%
TATGATCATCGTAACGGCTT+TGG - chr3_2:64413828-64413847 Msa0417290:intron 40.0%
CAGTATTATTGGAGCCATAG+TGG - chr3_2:64413977-64413996 Msa0417290:CDS 40.0%
AAGTCCAAGAACAACCACTA+TGG + chr3_2:64413994-64414013 None:intergenic 40.0%
GGACTTTATCTAGTTGTGTG+GGG - chr3_2:64414008-64414027 Msa0417290:CDS 40.0%
! TCATTTCTAGGAGCTGTAAC+CGG + chr3_2:64414125-64414144 None:intergenic 40.0%
GAAAGAGGAATTTGGCCATT+TGG - chr3_2:64414316-64414335 Msa0417290:intron 40.0%
AATTAGTGCTCCATGCCAAA+TGG + chr3_2:64414334-64414353 None:intergenic 40.0%
!! GCTGTTCAATTTGGTTCTGC+TGG - chr3_2:64412238-64412257 Msa0417290:three_prime_UTR 45.0%
GCCATGGATGCTATCAAGAA+AGG - chr3_2:64412274-64412293 Msa0417290:three_prime_UTR 45.0%
! GCCTTTCTTGATAGCATCCA+TGG + chr3_2:64412278-64412297 None:intergenic 45.0%
TTACAGCAGCGATGGCATTA+CGG + chr3_2:64412327-64412346 None:intergenic 45.0%
CCTTTCTAGATGAAACGCGA+AGG + chr3_2:64412359-64412378 None:intergenic 45.0%
CCTTCGCGTTTCATCTAGAA+AGG - chr3_2:64412356-64412375 Msa0417290:three_prime_UTR 45.0%
TGATCAATGCTTTGCTCTGC+TGG - chr3_2:64412693-64412712 Msa0417290:CDS 45.0%
GATCAATGCTTTGCTCTGCT+GGG - chr3_2:64412694-64412713 Msa0417290:CDS 45.0%
ATCAATGCTTTGCTCTGCTG+GGG - chr3_2:64412695-64412714 Msa0417290:CDS 45.0%
GGCACCATTGTAACATTTGG+AGG - chr3_2:64413089-64413108 Msa0417290:intron 45.0%
GTCCTGTAGTTAGTGTTGTG+AGG - chr3_2:64413138-64413157 Msa0417290:intron 45.0%
GACCTCACAACACTAACTAC+AGG + chr3_2:64413143-64413162 None:intergenic 45.0%
AACATGTCCCTATGATCCAC+CGG + chr3_2:64413220-64413239 None:intergenic 45.0%
AATTCTCATGCTTGGGCTCT+TGG - chr3_2:64413507-64413526 Msa0417290:CDS 45.0%
AAACACTAACCGCGTAAGCT+GGG + chr3_2:64413554-64413573 None:intergenic 45.0%
TTGTGTCCAAATAGCGCAAG+TGG + chr3_2:64413647-64413666 None:intergenic 45.0%
TATGCCATCCTCACCTACAA+AGG - chr3_2:64414067-64414086 Msa0417290:intron 45.0%
TGCAATGAGTCCTCCTTTGT+AGG + chr3_2:64414083-64414102 None:intergenic 45.0%
AGGAATTTGGCCATTTGGCA+TGG - chr3_2:64414321-64414340 Msa0417290:intron 45.0%
AGACTCAAAAGATGGGTGCG+TGG - chr3_2:64412182-64412201 Msa0417290:three_prime_UTR 50.0%
AGCTAACGTTACAGCAGCGA+TGG + chr3_2:64412335-64412354 None:intergenic 50.0%
CACAAAAGTAACAGAGGGCG+CGG + chr3_2:64412764-64412783 None:intergenic 50.0%
GGGACATGTTTCCTCCTCAT+TGG - chr3_2:64413230-64413249 Msa0417290:CDS 50.0%
AAAAGCCAGCACAGCCAATG+AGG + chr3_2:64413247-64413266 None:intergenic 50.0%
ACCGATGTCTCTCGCAACTT+GGG - chr3_2:64413428-64413447 Msa0417290:intron 50.0%
ACCCAAGTTGCGAGAGACAT+CGG + chr3_2:64413432-64413451 None:intergenic 50.0%
TGGTGCACTTCAAAGCTTCG+TGG - chr3_2:64413461-64413480 Msa0417290:intron 50.0%
AGCGCCACAATTCTCATGCT+TGG - chr3_2:64413499-64413518 Msa0417290:CDS 50.0%
GCGCCACAATTCTCATGCTT+GGG - chr3_2:64413500-64413519 Msa0417290:CDS 50.0%
GAGCCCAAGCATGAGAATTG+TGG + chr3_2:64413506-64413525 None:intergenic 50.0%
TCATGCTTGGGCTCTTGGTT+GGG - chr3_2:64413512-64413531 Msa0417290:CDS 50.0%
AACACTAACCGCGTAAGCTG+GGG + chr3_2:64413553-64413572 None:intergenic 50.0%
GAAACACTAACCGCGTAAGC+TGG + chr3_2:64413555-64413574 None:intergenic 50.0%
CACCAACCACTTGCGCTATT+TGG - chr3_2:64413638-64413657 Msa0417290:CDS 50.0%
GTCCAAATAGCGCAAGTGGT+TGG + chr3_2:64413643-64413662 None:intergenic 50.0%
GGAGCCATAGTGGTTGTTCT+TGG - chr3_2:64413987-64414006 Msa0417290:CDS 50.0%
TCCTCCTTTGTAGGTGAGGA+TGG + chr3_2:64414074-64414093 None:intergenic 50.0%
TGAGTCCTCCTTTGTAGGTG+AGG + chr3_2:64414078-64414097 None:intergenic 50.0%
! AGTGGTCACTTGTTGGGACT+TGG - chr3_2:64414366-64414385 Msa0417290:intron 50.0%
! GTGGTCACTTGTTGGGACTT+GGG - chr3_2:64414367-64414386 Msa0417290:intron 50.0%
CACAGCTGACAAGAACGACG+CGG + chr3_2:64412734-64412753 None:intergenic 55.0%
!! GCTCACATTTTCAGGCTGGC+GGG + chr3_2:64413183-64413202 None:intergenic 55.0%
!! CGCTCACATTTTCAGGCTGG+CGG + chr3_2:64413184-64413203 None:intergenic 55.0%
!! GGTCGCTCACATTTTCAGGC+TGG + chr3_2:64413187-64413206 None:intergenic 55.0%
! GTGGGGTCGCTCACATTTTC+AGG + chr3_2:64413191-64413210 None:intergenic 55.0%
GAAAATGTGAGCGACCCCAC+CGG - chr3_2:64413191-64413210 Msa0417290:intron 55.0%
! TTCCTCCTCATTGGCTGTGC+TGG - chr3_2:64413239-64413258 Msa0417290:CDS 55.0%
TTGCGAGAGACATCGGTGCA+GGG + chr3_2:64413425-64413444 None:intergenic 55.0%
CACCGATGTCTCTCGCAACT+TGG - chr3_2:64413427-64413446 Msa0417290:intron 55.0%
CTCATGCTTGGGCTCTTGGT+TGG - chr3_2:64413511-64413530 Msa0417290:CDS 55.0%
ACTCTTTGCCCCAGCTTACG+CGG - chr3_2:64413542-64413561 Msa0417290:CDS 55.0%
GCCATCCTCACCTACAAAGG+AGG - chr3_2:64414070-64414089 Msa0417290:intron 55.0%
AGACCAACAGCAGCAGCTAC+CGG - chr3_2:64414103-64414122 Msa0417290:intron 55.0%
TAACCGGTAGCTGCTGCTGT+TGG + chr3_2:64414109-64414128 None:intergenic 55.0%
! CTGGCGGGTAGCATGGCTAA+TGG + chr3_2:64413168-64413187 None:intergenic 60.0%
! TTTCAGGCTGGCGGGTAGCA+TGG + chr3_2:64413175-64413194 None:intergenic 60.0%
ATGATCCACCGGTCACCGGT+GGG + chr3_2:64413209-64413228 None:intergenic 60.0%
TATGATCCACCGGTCACCGG+TGG + chr3_2:64413210-64413229 None:intergenic 60.0%
ACCGGTGACCGGTGGATCAT+AGG - chr3_2:64413209-64413228 Msa0417290:CDS 60.0%
CCCTATGATCCACCGGTCAC+CGG + chr3_2:64413213-64413232 None:intergenic 60.0%
CCGGTGACCGGTGGATCATA+GGG - chr3_2:64413210-64413229 Msa0417290:CDS 60.0%
AGCCAGCACAGCCAATGAGG+AGG + chr3_2:64413244-64413263 None:intergenic 60.0%
GTTGCGAGAGACATCGGTGC+AGG + chr3_2:64413426-64413445 None:intergenic 60.0%
TGATCCACCGGTCACCGGTG+GGG + chr3_2:64413208-64413227 None:intergenic 65.0%
TGAGCGACCCCACCGGTGAC+CGG - chr3_2:64413198-64413217 Msa0417290:CDS 70.0%
! GCGACCCCACCGGTGACCGG+TGG - chr3_2:64413201-64413220 Msa0417290:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64412126 64414633 64412126 ID=Msa0417290;Name=Msa0417290
chr3_2 mRNA 64412126 64414633 64412126 ID=Msa0417290-mRNA-1;Parent=Msa0417290;Name=Msa0417290-mRNA-1;_AED=0.29;_eAED=0.29;_QI=67|1|1|1|1|1|7|416|387
chr3_2 exon 64412126 64412779 64412126 ID=Msa0417290-mRNA-1:exon:14301;Parent=Msa0417290-mRNA-1
chr3_2 exon 64412872 64413023 64412872 ID=Msa0417290-mRNA-1:exon:14300;Parent=Msa0417290-mRNA-1
chr3_2 exon 64413196 64413357 64413196 ID=Msa0417290-mRNA-1:exon:14299;Parent=Msa0417290-mRNA-1
chr3_2 exon 64413473 64413719 64413473 ID=Msa0417290-mRNA-1:exon:14298;Parent=Msa0417290-mRNA-1
chr3_2 exon 64413959 64414075 64413959 ID=Msa0417290-mRNA-1:exon:14297;Parent=Msa0417290-mRNA-1
chr3_2 exon 64414204 64414266 64414204 ID=Msa0417290-mRNA-1:exon:14296;Parent=Msa0417290-mRNA-1
chr3_2 exon 64414382 64414633 64414382 ID=Msa0417290-mRNA-1:exon:14295;Parent=Msa0417290-mRNA-1
chr3_2 five_prime_UTR 64414567 64414633 64414567 ID=Msa0417290-mRNA-1:five_prime_utr;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64414382 64414566 64414382 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64414204 64414266 64414204 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64413959 64414075 64413959 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64413473 64413719 64413473 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64413196 64413357 64413196 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64412872 64413023 64412872 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 CDS 64412542 64412779 64412542 ID=Msa0417290-mRNA-1:cds;Parent=Msa0417290-mRNA-1
chr3_2 three_prime_UTR 64412126 64412541 64412126 ID=Msa0417290-mRNA-1:three_prime_utr;Parent=Msa0417290-mRNA-1
Gene Sequence

>Msa0417290

ATGGGTGCGTGGTTAAAAAATGCAAAGCCATATCTACTATTGTTGGCTGTTCAATTTGGTTCTGCTGGTATGTTCATTTTTGCCATGGATGCTATCAAGAAAGGCATGAGCCATTATGTCTTCATTGTTTACCGTAATGCCATCGCTGCTGTAACGTTAGCTCCCTTCGCGTTTCATCTAGAAAGGAAAATTAGGCCGAAGATGTCTGTCCGTGTATTTTTAGAGATTATGTTACTGGCTTTCTTTGAAATAATACTTGATCAATGCTTTGCTCTGCTGGGGATGAAGTTAACGTCCGCGTCGTTCTTGTCAGCTGTGATGAACTCCGCGCCCTCTGTTACTTTTGTGTTTGCGGTCATTCTAAAACTGGAACACATGAAGATTAAGGAGATAGCATGTCAAGCAAAAATAATCGGCACCATTGTAACATTTGGAGGAACATTGCTAATGGCTCTGTACAAAGGTCCTGTAGTTAGTGTTGTGAGGTCATCCATTAGCCATGCTACCCGCCAGCCTGAAAATGTGAGCGACCCCACCGGTGACCGGTGGATCATAGGGACATGTTTCCTCCTCATTGGCTGTGCTGGCTTTTCTGCGTTTTACATATTGCAGGCCATAACGTTGAGAAAGTACCCTGCACCGATGTCTCTCGCAACTTGGGTTTGTTTCATTGGTGCACTTCAAAGCTTCGTGGTAGCATTCTTTGCAGAGCGCCACAATTCTCATGCTTGGGCTCTTGGTTGGGATACAAGACTCTTTGCCCCAGCTTACGCGGGAATAGTTACATCAGGAGTGCAGTATTACATACAAGGTCTGGTTATAAAAACTATGGGACCAGTTATCGTAACTGCTTTTAATCCGGTACGTATGATCATCGTAACGGCTTTGGCTTGCATCATCCTCTCTGAACAACTTTTTCTTGGAAGTATTATTGGAGCCATAGTGGTTGTTCTTGGACTTTATCTAGTTGTGTGGGGAAAATCCAAAGAATACAAAGCTCAAAATCATATTGATATGCCATCCTCACCTACAAAGGAGGACTCATTGCAAGACCAACAGCAGCAGCTACCGGTTACAGCTCCTAGAAATGAAAGTAACGATATTAATGAAGCTCAATTGGTCATTCACAGTGAAGAAAAATGTGATGGTTGTGGCAGAAATTAA
Protein sequence

>Msa0417290

MGAWLKNAKPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIAAVTLAPFAFHLERKIRPKMSVRVFLEIMLLAFFEIILDQCFALLGMKLTSASFLSAVMNSAPSVTFVFAVILKLEHMKIKEIACQAKIIGTIVTFGGTLLMALYKGPVVSVVRSSISHATRQPENVSDPTGDRWIIGTCFLLIGCAGFSAFYILQAITLRKYPAPMSLATWVCFIGALQSFVVAFFAERHNSHAWALGWDTRLFAPAYAGIVTSGVQYYIQGLVIKTMGPVIVTAFNPVRMIIVTALACIILSEQLFLGSIIGAIVVVLGLYLVVWGKSKEYKAQNHIDMPSSPTKEDSLQDQQQQLPVTAPRNESNDINEAQLVIHSEEKCDGCGRN*