AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1263520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263520 MtrunA17_Chr4g0075171 96.267 375 8 1 1 375 1 369 0.0 729
Msa1263520 MtrunA17_Chr4g0024991 52.055 365 174 1 1 365 1 364 3.57e-112 332
Msa1263520 MtrunA17_Chr3g0142181 53.030 330 153 2 45 373 47 375 2.06e-104 312
Msa1263520 MtrunA17_Chr4g0056691 37.846 325 192 5 39 362 177 492 5.94e-65 216
Msa1263520 MtrunA17_Chr6g0462891 35.312 320 197 5 43 362 232 541 6.17e-63 212
Msa1263520 MtrunA17_Chr6g0462881 35.077 325 201 6 38 362 218 532 8.31e-63 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263520 AT1G62280.1 53.693 352 152 4 26 369 11 359 2.14e-122 358
Msa1263520 AT1G62262.1 51.397 358 152 4 19 371 13 353 2.68e-117 345
Msa1263520 AT5G24030.1 37.812 320 189 4 43 362 253 562 3.45e-67 224
Msa1263520 AT1G12480.1 35.398 339 209 4 25 362 166 495 6.49e-59 200
Msa1263520 AT4G27970.1 34.985 323 194 5 43 362 138 447 2.93e-58 197
Msa1263520 AT4G27970.6 34.985 323 194 5 43 362 138 447 2.93e-58 197
Msa1263520 AT4G27970.3 35.370 311 185 5 55 362 1 298 8.34e-58 192
Msa1263520 AT4G27970.5 35.370 311 185 5 55 362 1 298 8.34e-58 192
Msa1263520 AT5G24030.2 38.846 260 151 3 43 302 253 504 6.68e-54 186
Msa1263520 AT4G27970.4 37.008 254 146 4 43 293 138 380 7.51e-48 167
Msa1263520 AT4G27970.2 37.008 254 146 4 43 293 138 380 7.51e-48 167

Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAACCTGGTTTCTGTTAT+AGG 0.207016 8_2:+66721789 Msa1263520:CDS
CTTATATAATGCAGGCTTGC+AGG 0.280775 8_2:+66722160 Msa1263520:intron
GCTAAGCCAAGGAATGTTAA+AGG 0.296789 8_2:-66722243 None:intergenic
TCAACCTGGTTTCTGTTATA+GGG 0.297612 8_2:+66721790 Msa1263520:CDS
GACCTACCTGAGAAATAAAA+AGG 0.303132 8_2:-66722073 None:intergenic
GAATGTGATGGCTTGGTGAT+TGG 0.310351 8_2:-66721300 None:intergenic
GCAATTTCAATGTATTCATT+AGG 0.313578 8_2:+66721861 Msa1263520:CDS
CTGTTGCTTATCTATTACTT+TGG 0.340533 8_2:+66721469 Msa1263520:CDS
GATGAATTTGCACATCATAT+TGG 0.345252 8_2:+66721570 Msa1263520:CDS
TCATTCCCTTTAACATTCCT+TGG 0.356219 8_2:+66722237 Msa1263520:CDS
CAAGCTAGACTTGCCATACT+TGG 0.362804 8_2:-66721990 None:intergenic
CACACAATTATGTCAATTGT+TGG 0.378332 8_2:-66721228 None:intergenic
ACAATGAATCACAAACTCTT+TGG 0.388818 8_2:+66721424 Msa1263520:CDS
AATGTGATGGCTTGGTGATT+GGG 0.406822 8_2:-66721299 None:intergenic
TGCTTCAAGCATCACCGCCT+TGG 0.430111 8_2:+66721634 Msa1263520:CDS
GCTCAAGTTATGACAGAAAT+CGG 0.453671 8_2:+66721825 Msa1263520:CDS
ATAACAGAAACCAGGTTGAC+AGG 0.456215 8_2:-66721786 None:intergenic
TATATGTATTGTGTCTGTGC+TGG 0.461043 8_2:+66722323 Msa1263520:CDS
GGTTTCTGTTATAGGGAACT+TGG 0.463993 8_2:+66721797 Msa1263520:CDS
TTGGTGCTCAAGCTTTGCTA+TGG 0.471950 8_2:+66721382 Msa1263520:CDS
TTAACTACATGTATACTCCT+TGG 0.476184 8_2:+66721595 Msa1263520:CDS
CTAAGCCAAGGAATGTTAAA+GGG 0.477768 8_2:-66722242 None:intergenic
TGACTCTGAATGTGATGGCT+TGG 0.485943 8_2:-66721307 None:intergenic
GAGCATATAAAGAAAGGATA+AGG 0.489737 8_2:-66721517 None:intergenic
GCATGGATCTTAGTTAAGAA+TGG 0.489812 8_2:-66721333 None:intergenic
TTCAATGTATTCATTAGGAA+TGG 0.492135 8_2:+66721866 Msa1263520:CDS
CAAGTATGGCAAGTCTAGCT+TGG 0.498344 8_2:+66721991 Msa1263520:CDS
CTAGCTTGGAAATCCATCTC+AGG 0.499285 8_2:+66722005 Msa1263520:CDS
GCACTTGAGCATATAAAGAA+AGG 0.500953 8_2:-66721523 None:intergenic
TGTTCAAGAAAACTATGAAA+AGG 0.514872 8_2:+66722190 Msa1263520:CDS
AGCACTAGTAGTATTGTTCG+TGG 0.515674 8_2:-66721256 None:intergenic
GTGATGGCTTGGTGATTGGG+TGG 0.520148 8_2:-66721296 None:intergenic
AGTAGCAAACCCTGTCAACC+TGG 0.530614 8_2:+66721776 Msa1263520:CDS
TTCTGTTATAGGGAACTTGG+TGG 0.536173 8_2:+66721800 Msa1263520:CDS
CATGGCCTCTGCATTAATGC+TGG 0.539503 8_2:+66722299 Msa1263520:CDS
GAATCACAAACTCTTTGGCA+TGG 0.539825 8_2:+66721429 Msa1263520:CDS
AATGGTTCACTACTGAAAAG+AGG 0.541292 8_2:+66721742 Msa1263520:CDS
TAAGCTGGTCTTAGCACTAC+AGG 0.541582 8_2:-66721948 None:intergenic
ACTATAGAATAGAATGGGTG+AGG 0.549206 8_2:+66721194 None:intergenic
GACGAGAAAAGCACCTGAGA+TGG 0.550784 8_2:-66722018 None:intergenic
AAGTTATGACAGAAATCGGT+TGG 0.554540 8_2:+66721829 Msa1263520:CDS
TGATGGCTTGGTGATTGGGT+GGG 0.556380 8_2:-66721295 None:intergenic
CTTGCACTTTAATGCAGTGA+AGG 0.559661 8_2:+66721548 Msa1263520:CDS
TAGCAAAGCTTGAGCACCAA+AGG 0.566448 8_2:-66721379 None:intergenic
TTCTTAACTAAGATCCATGC+AGG 0.573358 8_2:+66721336 Msa1263520:CDS
TGAAAAGGCTAAACGTTACA+TGG 0.577666 8_2:+66722205 Msa1263520:CDS
TAACAGAAACCAGGTTGACA+GGG 0.582523 8_2:-66721785 None:intergenic
AGTAATAGATAAGCAACAGA+AGG 0.591520 8_2:-66721465 None:intergenic
ATGAGAAGATATGAAATCCA+AGG 0.593130 8_2:-66721612 None:intergenic
CATATAAAGAAAGGATAAGG+TGG 0.598970 8_2:-66721514 None:intergenic
GGTTGTGACTCTGAATGTGA+TGG 0.605496 8_2:-66721312 None:intergenic
ATTCAGCACAAGCTAAGCCA+AGG 0.637854 8_2:-66722254 None:intergenic
TTGTGCTGAATATGCTCATG+AGG 0.642748 8_2:+66722266 Msa1263520:CDS
TATAACCAGCATTAATGCAG+AGG 0.645479 8_2:-66722304 None:intergenic
CAAGTTCTCGAAACAATCCA+AGG 0.648724 8_2:-66721651 None:intergenic
GACATCATAATTCATTTACG+AGG 0.664907 8_2:-66722408 None:intergenic
TCATGAGGTGAAAAGTAGCA+TGG 0.675843 8_2:+66722281 Msa1263520:CDS
CTTCTCAACTTTGAGCACAG+TGG 0.684753 8_2:-66722367 None:intergenic
AAAGGCTAAACGTTACATGG+TGG 0.692493 8_2:+66722208 Msa1263520:CDS
AGTTCCCTATAACAGAAACC+AGG 0.725065 8_2:-66721794 None:intergenic
GTTCTCGAAACAATCCAAGG+CGG 0.791324 8_2:-66721648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATATAGGGTAATTT+TGG - chr8_2:66722098-66722117 None:intergenic 15.0%
!! TAAGCAACTAAATATATATA+GGG - chr8_2:66722107-66722126 None:intergenic 15.0%
!! ATAAGCAACTAAATATATAT+AGG - chr8_2:66722108-66722127 None:intergenic 15.0%
!!! AAATATATATAGGGTAATTT+TGG - chr8_2:66722098-66722117 None:intergenic 15.0%
!! TAAGCAACTAAATATATATA+GGG - chr8_2:66722107-66722126 None:intergenic 15.0%
!! ATAAGCAACTAAATATATAT+AGG - chr8_2:66722108-66722127 None:intergenic 15.0%
!! TTTTTCATTTGTGTTTCCTT+TGG + chr8_2:66721363-66721382 Msa1263520:CDS 25.0%
!! ATGTAAAACTTTTTGGACAA+TGG + chr8_2:66721724-66721743 Msa1263520:CDS 25.0%
! GCAATTTCAATGTATTCATT+AGG + chr8_2:66721861-66721880 Msa1263520:CDS 25.0%
! TTCAATGTATTCATTAGGAA+TGG + chr8_2:66721866-66721885 Msa1263520:CDS 25.0%
!!! TTTGTTCCTTTTTATTTCTC+AGG + chr8_2:66722067-66722086 Msa1263520:CDS 25.0%
! TGTTCAAGAAAACTATGAAA+AGG + chr8_2:66722190-66722209 Msa1263520:CDS 25.0%
!! TTTTTCATTTGTGTTTCCTT+TGG + chr8_2:66721363-66721382 Msa1263520:CDS 25.0%
!! ATGTAAAACTTTTTGGACAA+TGG + chr8_2:66721724-66721743 Msa1263520:CDS 25.0%
! GCAATTTCAATGTATTCATT+AGG + chr8_2:66721861-66721880 Msa1263520:CDS 25.0%
! TTCAATGTATTCATTAGGAA+TGG + chr8_2:66721866-66721885 Msa1263520:CDS 25.0%
!!! TTTGTTCCTTTTTATTTCTC+AGG + chr8_2:66722067-66722086 Msa1263520:CDS 25.0%
! TGTTCAAGAAAACTATGAAA+AGG + chr8_2:66722190-66722209 Msa1263520:CDS 25.0%
CACACAATTATGTCAATTGT+TGG - chr8_2:66721231-66721250 None:intergenic 30.0%
ACAATGAATCACAAACTCTT+TGG + chr8_2:66721424-66721443 Msa1263520:CDS 30.0%
AGTAATAGATAAGCAACAGA+AGG - chr8_2:66721468-66721487 None:intergenic 30.0%
! CTGTTGCTTATCTATTACTT+TGG + chr8_2:66721469-66721488 Msa1263520:CDS 30.0%
CATATAAAGAAAGGATAAGG+TGG - chr8_2:66721517-66721536 None:intergenic 30.0%
GAGCATATAAAGAAAGGATA+AGG - chr8_2:66721520-66721539 None:intergenic 30.0%
GATGAATTTGCACATCATAT+TGG + chr8_2:66721570-66721589 Msa1263520:CDS 30.0%
TTAACTACATGTATACTCCT+TGG + chr8_2:66721595-66721614 Msa1263520:CDS 30.0%
ATGAGAAGATATGAAATCCA+AGG - chr8_2:66721615-66721634 None:intergenic 30.0%
! CTGCTTGATGTAAAACTTTT+TGG + chr8_2:66721717-66721736 Msa1263520:CDS 30.0%
GCAAAAAACAAGAAATAAGC+TGG - chr8_2:66721966-66721985 None:intergenic 30.0%
!! TTCCTTTTTATTTCTCAGGT+AGG + chr8_2:66722071-66722090 Msa1263520:intron 30.0%
CCTTGATCATTACAATGAAA+TGG - chr8_2:66722140-66722159 None:intergenic 30.0%
CCATTTCATTGTAATGATCA+AGG + chr8_2:66722137-66722156 Msa1263520:intron 30.0%
CACACAATTATGTCAATTGT+TGG - chr8_2:66721231-66721250 None:intergenic 30.0%
ACAATGAATCACAAACTCTT+TGG + chr8_2:66721424-66721443 Msa1263520:CDS 30.0%
AGTAATAGATAAGCAACAGA+AGG - chr8_2:66721468-66721487 None:intergenic 30.0%
! CTGTTGCTTATCTATTACTT+TGG + chr8_2:66721469-66721488 Msa1263520:CDS 30.0%
CATATAAAGAAAGGATAAGG+TGG - chr8_2:66721517-66721536 None:intergenic 30.0%
GAGCATATAAAGAAAGGATA+AGG - chr8_2:66721520-66721539 None:intergenic 30.0%
GATGAATTTGCACATCATAT+TGG + chr8_2:66721570-66721589 Msa1263520:CDS 30.0%
TTAACTACATGTATACTCCT+TGG + chr8_2:66721595-66721614 Msa1263520:CDS 30.0%
ATGAGAAGATATGAAATCCA+AGG - chr8_2:66721615-66721634 None:intergenic 30.0%
! CTGCTTGATGTAAAACTTTT+TGG + chr8_2:66721717-66721736 Msa1263520:CDS 30.0%
GCAAAAAACAAGAAATAAGC+TGG - chr8_2:66721966-66721985 None:intergenic 30.0%
!! TTCCTTTTTATTTCTCAGGT+AGG + chr8_2:66722071-66722090 Msa1263520:intron 30.0%
CCTTGATCATTACAATGAAA+TGG - chr8_2:66722140-66722159 None:intergenic 30.0%
CCATTTCATTGTAATGATCA+AGG + chr8_2:66722137-66722156 Msa1263520:intron 30.0%
GCATGGATCTTAGTTAAGAA+TGG - chr8_2:66721336-66721355 None:intergenic 35.0%
TTCTTAACTAAGATCCATGC+AGG + chr8_2:66721336-66721355 Msa1263520:CDS 35.0%
AAATGAAAAAGTAGCCTGCA+TGG - chr8_2:66721353-66721372 None:intergenic 35.0%
GCACTTGAGCATATAAAGAA+AGG - chr8_2:66721526-66721545 None:intergenic 35.0%
AATGGTTCACTACTGAAAAG+AGG + chr8_2:66721742-66721761 Msa1263520:CDS 35.0%
TCAACCTGGTTTCTGTTATA+GGG + chr8_2:66721790-66721809 Msa1263520:CDS 35.0%
GCTCAAGTTATGACAGAAAT+CGG + chr8_2:66721825-66721844 Msa1263520:CDS 35.0%
AAGTTATGACAGAAATCGGT+TGG + chr8_2:66721829-66721848 Msa1263520:CDS 35.0%
GACCTACCTGAGAAATAAAA+AGG - chr8_2:66722076-66722095 None:intergenic 35.0%
GATCAAGGCTTATATAATGC+AGG + chr8_2:66722152-66722171 Msa1263520:intron 35.0%
! ATAGTTTTCTTGAACAGTGC+TGG - chr8_2:66722186-66722205 None:intergenic 35.0%
TGAAAAGGCTAAACGTTACA+TGG + chr8_2:66722205-66722224 Msa1263520:CDS 35.0%
TCATTCCCTTTAACATTCCT+TGG + chr8_2:66722237-66722256 Msa1263520:CDS 35.0%
CTAAGCCAAGGAATGTTAAA+GGG - chr8_2:66722245-66722264 None:intergenic 35.0%
TATAACCAGCATTAATGCAG+AGG - chr8_2:66722307-66722326 None:intergenic 35.0%
TATATGTATTGTGTCTGTGC+TGG + chr8_2:66722323-66722342 Msa1263520:CDS 35.0%
GCATGGATCTTAGTTAAGAA+TGG - chr8_2:66721336-66721355 None:intergenic 35.0%
TTCTTAACTAAGATCCATGC+AGG + chr8_2:66721336-66721355 Msa1263520:CDS 35.0%
AAATGAAAAAGTAGCCTGCA+TGG - chr8_2:66721353-66721372 None:intergenic 35.0%
GCACTTGAGCATATAAAGAA+AGG - chr8_2:66721526-66721545 None:intergenic 35.0%
AATGGTTCACTACTGAAAAG+AGG + chr8_2:66721742-66721761 Msa1263520:CDS 35.0%
TCAACCTGGTTTCTGTTATA+GGG + chr8_2:66721790-66721809 Msa1263520:CDS 35.0%
GCTCAAGTTATGACAGAAAT+CGG + chr8_2:66721825-66721844 Msa1263520:CDS 35.0%
AAGTTATGACAGAAATCGGT+TGG + chr8_2:66721829-66721848 Msa1263520:CDS 35.0%
GACCTACCTGAGAAATAAAA+AGG - chr8_2:66722076-66722095 None:intergenic 35.0%
GATCAAGGCTTATATAATGC+AGG + chr8_2:66722152-66722171 Msa1263520:intron 35.0%
! ATAGTTTTCTTGAACAGTGC+TGG - chr8_2:66722186-66722205 None:intergenic 35.0%
TGAAAAGGCTAAACGTTACA+TGG + chr8_2:66722205-66722224 Msa1263520:CDS 35.0%
TCATTCCCTTTAACATTCCT+TGG + chr8_2:66722237-66722256 Msa1263520:CDS 35.0%
CTAAGCCAAGGAATGTTAAA+GGG - chr8_2:66722245-66722264 None:intergenic 35.0%
TATAACCAGCATTAATGCAG+AGG - chr8_2:66722307-66722326 None:intergenic 35.0%
TATATGTATTGTGTCTGTGC+TGG + chr8_2:66722323-66722342 Msa1263520:CDS 35.0%
AGCACTAGTAGTATTGTTCG+TGG - chr8_2:66721259-66721278 None:intergenic 40.0%
!! AATGTGATGGCTTGGTGATT+GGG - chr8_2:66721302-66721321 None:intergenic 40.0%
GAATCACAAACTCTTTGGCA+TGG + chr8_2:66721429-66721448 Msa1263520:CDS 40.0%
CTTGCACTTTAATGCAGTGA+AGG + chr8_2:66721548-66721567 Msa1263520:CDS 40.0%
CAAGTTCTCGAAACAATCCA+AGG - chr8_2:66721654-66721673 None:intergenic 40.0%
! TAACAGAAACCAGGTTGACA+GGG - chr8_2:66721788-66721807 None:intergenic 40.0%
! ATAACAGAAACCAGGTTGAC+AGG - chr8_2:66721789-66721808 None:intergenic 40.0%
GTCAACCTGGTTTCTGTTAT+AGG + chr8_2:66721789-66721808 Msa1263520:CDS 40.0%
AGTTCCCTATAACAGAAACC+AGG - chr8_2:66721797-66721816 None:intergenic 40.0%
GGTTTCTGTTATAGGGAACT+TGG + chr8_2:66721797-66721816 Msa1263520:CDS 40.0%
TTCTGTTATAGGGAACTTGG+TGG + chr8_2:66721800-66721819 Msa1263520:CDS 40.0%
!!! GTTTTTTGCTGCACCAAGTA+TGG + chr8_2:66721977-66721996 Msa1263520:CDS 40.0%
CTTATATAATGCAGGCTTGC+AGG + chr8_2:66722160-66722179 Msa1263520:intron 40.0%
AAAGGCTAAACGTTACATGG+TGG + chr8_2:66722208-66722227 Msa1263520:CDS 40.0%
GCTAAGCCAAGGAATGTTAA+AGG - chr8_2:66722246-66722265 None:intergenic 40.0%
TTGTGCTGAATATGCTCATG+AGG + chr8_2:66722266-66722285 Msa1263520:CDS 40.0%
TCATGAGGTGAAAAGTAGCA+TGG + chr8_2:66722281-66722300 Msa1263520:CDS 40.0%
AGCACTAGTAGTATTGTTCG+TGG - chr8_2:66721259-66721278 None:intergenic 40.0%
!! AATGTGATGGCTTGGTGATT+GGG - chr8_2:66721302-66721321 None:intergenic 40.0%
GAATCACAAACTCTTTGGCA+TGG + chr8_2:66721429-66721448 Msa1263520:CDS 40.0%
CTTGCACTTTAATGCAGTGA+AGG + chr8_2:66721548-66721567 Msa1263520:CDS 40.0%
CAAGTTCTCGAAACAATCCA+AGG - chr8_2:66721654-66721673 None:intergenic 40.0%
! TAACAGAAACCAGGTTGACA+GGG - chr8_2:66721788-66721807 None:intergenic 40.0%
! ATAACAGAAACCAGGTTGAC+AGG - chr8_2:66721789-66721808 None:intergenic 40.0%
GTCAACCTGGTTTCTGTTAT+AGG + chr8_2:66721789-66721808 Msa1263520:CDS 40.0%
AGTTCCCTATAACAGAAACC+AGG - chr8_2:66721797-66721816 None:intergenic 40.0%
GGTTTCTGTTATAGGGAACT+TGG + chr8_2:66721797-66721816 Msa1263520:CDS 40.0%
TTCTGTTATAGGGAACTTGG+TGG + chr8_2:66721800-66721819 Msa1263520:CDS 40.0%
!!! GTTTTTTGCTGCACCAAGTA+TGG + chr8_2:66721977-66721996 Msa1263520:CDS 40.0%
CTTATATAATGCAGGCTTGC+AGG + chr8_2:66722160-66722179 Msa1263520:intron 40.0%
AAAGGCTAAACGTTACATGG+TGG + chr8_2:66722208-66722227 Msa1263520:CDS 40.0%
GCTAAGCCAAGGAATGTTAA+AGG - chr8_2:66722246-66722265 None:intergenic 40.0%
TTGTGCTGAATATGCTCATG+AGG + chr8_2:66722266-66722285 Msa1263520:CDS 40.0%
TCATGAGGTGAAAAGTAGCA+TGG + chr8_2:66722281-66722300 Msa1263520:CDS 40.0%
!! GAATGTGATGGCTTGGTGAT+TGG - chr8_2:66721303-66721322 None:intergenic 45.0%
TGACTCTGAATGTGATGGCT+TGG - chr8_2:66721310-66721329 None:intergenic 45.0%
GGTTGTGACTCTGAATGTGA+TGG - chr8_2:66721315-66721334 None:intergenic 45.0%
TAGCAAAGCTTGAGCACCAA+AGG - chr8_2:66721382-66721401 None:intergenic 45.0%
! TTGGTGCTCAAGCTTTGCTA+TGG + chr8_2:66721382-66721401 Msa1263520:CDS 45.0%
GTTCTCGAAACAATCCAAGG+CGG - chr8_2:66721651-66721670 None:intergenic 45.0%
!! TAAGCTGGTCTTAGCACTAC+AGG - chr8_2:66721951-66721970 None:intergenic 45.0%
CAAGCTAGACTTGCCATACT+TGG - chr8_2:66721993-66722012 None:intergenic 45.0%
CAAGTATGGCAAGTCTAGCT+TGG + chr8_2:66721991-66722010 Msa1263520:CDS 45.0%
CTAGCTTGGAAATCCATCTC+AGG + chr8_2:66722005-66722024 Msa1263520:CDS 45.0%
ATTCAGCACAAGCTAAGCCA+AGG - chr8_2:66722257-66722276 None:intergenic 45.0%
CTTCTCAACTTTGAGCACAG+TGG - chr8_2:66722370-66722389 None:intergenic 45.0%
!! GAATGTGATGGCTTGGTGAT+TGG - chr8_2:66721303-66721322 None:intergenic 45.0%
TGACTCTGAATGTGATGGCT+TGG - chr8_2:66721310-66721329 None:intergenic 45.0%
GGTTGTGACTCTGAATGTGA+TGG - chr8_2:66721315-66721334 None:intergenic 45.0%
TAGCAAAGCTTGAGCACCAA+AGG - chr8_2:66721382-66721401 None:intergenic 45.0%
! TTGGTGCTCAAGCTTTGCTA+TGG + chr8_2:66721382-66721401 Msa1263520:CDS 45.0%
GTTCTCGAAACAATCCAAGG+CGG - chr8_2:66721651-66721670 None:intergenic 45.0%
!! TAAGCTGGTCTTAGCACTAC+AGG - chr8_2:66721951-66721970 None:intergenic 45.0%
CAAGCTAGACTTGCCATACT+TGG - chr8_2:66721993-66722012 None:intergenic 45.0%
CAAGTATGGCAAGTCTAGCT+TGG + chr8_2:66721991-66722010 Msa1263520:CDS 45.0%
CTAGCTTGGAAATCCATCTC+AGG + chr8_2:66722005-66722024 Msa1263520:CDS 45.0%
ATTCAGCACAAGCTAAGCCA+AGG - chr8_2:66722257-66722276 None:intergenic 45.0%
CTTCTCAACTTTGAGCACAG+TGG - chr8_2:66722370-66722389 None:intergenic 45.0%
!! TGATGGCTTGGTGATTGGGT+GGG - chr8_2:66721298-66721317 None:intergenic 50.0%
AGTAGCAAACCCTGTCAACC+TGG + chr8_2:66721776-66721795 Msa1263520:CDS 50.0%
!! GACGAGAAAAGCACCTGAGA+TGG - chr8_2:66722021-66722040 None:intergenic 50.0%
CATGGCCTCTGCATTAATGC+TGG + chr8_2:66722299-66722318 Msa1263520:CDS 50.0%
!! TGATGGCTTGGTGATTGGGT+GGG - chr8_2:66721298-66721317 None:intergenic 50.0%
AGTAGCAAACCCTGTCAACC+TGG + chr8_2:66721776-66721795 Msa1263520:CDS 50.0%
!! GACGAGAAAAGCACCTGAGA+TGG - chr8_2:66722021-66722040 None:intergenic 50.0%
CATGGCCTCTGCATTAATGC+TGG + chr8_2:66722299-66722318 Msa1263520:CDS 50.0%
!! GTGATGGCTTGGTGATTGGG+TGG - chr8_2:66721299-66721318 None:intergenic 55.0%
TGCTTCAAGCATCACCGCCT+TGG + chr8_2:66721634-66721653 Msa1263520:CDS 55.0%
!! GTGATGGCTTGGTGATTGGG+TGG - chr8_2:66721299-66721318 None:intergenic 55.0%
TGCTTCAAGCATCACCGCCT+TGG + chr8_2:66721634-66721653 Msa1263520:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 66721207 66722419 66721207 ID=Msa1263520;Name=Msa1263520
chr8_2 mRNA 66721207 66722419 66721207 ID=Msa1263520-mRNA-1;Parent=Msa1263520;Name=Msa1263520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|375
chr8_2 exon 66721207 66722088 66721207 ID=Msa1263520-mRNA-1:exon:21804;Parent=Msa1263520-mRNA-1
chr8_2 exon 66722174 66722419 66722174 ID=Msa1263520-mRNA-1:exon:21805;Parent=Msa1263520-mRNA-1
chr8_2 CDS 66721207 66722088 66721207 ID=Msa1263520-mRNA-1:cds;Parent=Msa1263520-mRNA-1
chr8_2 CDS 66722174 66722419 66722174 ID=Msa1263520-mRNA-1:cds;Parent=Msa1263520-mRNA-1
Gene Sequence

>Msa1263520

ATGGGTGAGGTTGCAATCAAGCCAACAATTGACATAATTGTGTGTGCTTCCACGAACAATACTACTAGTGCTAAAAACATTGATAATTCCCACCCAATCACCAAGCCATCACATTCAGAGTCACAACCATTCTTAACTAAGATCCATGCAGGCTACTTTTTCATTTGTGTTTCCTTTGGTGCTCAAGCTTTGCTATGGAAGAGTTTAAGTGAACATAACAATGAATCACAAACTCTTTGGCATGGATTTAATTTCATGCCTTCTGTTGCTTATCTATTACTTTGGTGTCTTGCAGTACTCATTGCAGCCACCTTATCCTTTCTTTATATGCTCAAGTGCATCTTGCACTTTAATGCAGTGAAGGATGAATTTGCACATCATATTGGAGTTAACTACATGTATACTCCTTGGATTTCATATCTTCTCATGCTTCAAGCATCACCGCCTTGGATTGTTTCGAGAACTTGTTACTACGAGTTTCTTTGTCTAGCATTTTCTTTTGTAATATTTCTGCTTGATGTAAAACTTTTTGGACAATGGTTCACTACTGAAAAGAGGTTTCTGTCAGTAGTAGCAAACCCTGTCAACCTGGTTTCTGTTATAGGGAACTTGGTGGCTGCTCAAGTTATGACAGAAATCGGTTGGAACGAGATTGCAATTTCAATGTATTCATTAGGAATGGTACATTATTTGATTCTATTTGTGACGCTGTATCAGCGTCTAACAAGTAGTAATCAGTTTCCTGTAGTGCTAAGACCAGCTTATTTCTTGTTTTTTGCTGCACCAAGTATGGCAAGTCTAGCTTGGAAATCCATCTCAGGTGCTTTTCTCGTCTCATCAAAGATGCTGTTCTTTCTCTCTTTGTTCCTTTTTATTTCTCAGGCTTGCAGGCCAGCACTGTTCAAGAAAACTATGAAAAGGCTAAACGTTACATGGTGGATTTACTCATTCCCTTTAACATTCCTTGGCTTAGCTTGTGCTGAATATGCTCATGAGGTGAAAAGTAGCATGGCCTCTGCATTAATGCTGGTTATATGTATTGTGTCTGTGCTGGTTTTTGTCTTTTTGATGCTAACCACTGTGCTCAAAGTTGAGAAGTTGCTGCATAAAAAAGCTCCTCGTAAATGA

Protein sequence

>Msa1263520

MGEVAIKPTIDIIVCASTNNTTSAKNIDNSHPITKPSHSESQPFLTKIHAGYFFICVSFGAQALLWKSLSEHNNESQTLWHGFNFMPSVAYLLLWCLAVLIAATLSFLYMLKCILHFNAVKDEFAHHIGVNYMYTPWISYLLMLQASPPWIVSRTCYYEFLCLAFSFVIFLLDVKLFGQWFTTEKRFLSVVANPVNLVSVIGNLVAAQVMTEIGWNEIAISMYSLGMVHYLILFVTLYQRLTSSNQFPVVLRPAYFLFFAAPSMASLAWKSISGAFLVSSKMLFFLSLFLFISQACRPALFKKTMKRLNVTWWIYSFPLTFLGLACAEYAHEVKSSMASALMLVICIVSVLVFVFLMLTTVLKVEKLLHKKAPRK*