AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554180 MtrunA17_Chr4g0040061 96.721 305 10 0 21 325 89 393 0.0 602
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554180 AT1G75340.3 39.692 325 151 9 26 324 73 378 1.60e-59 196
Msa0554180 AT1G75340.2 39.692 325 151 9 26 324 93 398 2.79e-59 195
Msa0554180 AT1G75340.1 36.639 363 166 10 26 324 73 435 1.39e-51 176

Find 118 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGACGTGGAGTGCCGTTC+TGG 0.197426 4_1:+51428935 None:intergenic
TTGTCATGTTACAATGAAAA+AGG 0.214628 4_1:+51423881 None:intergenic
TAGCTCCACTACAATGTTTC+AGG 0.285865 4_1:-51425310 Msa0554180:CDS
CAACGGGTGGTTGTTGGAAC+TGG 0.317831 4_1:+51425346 None:intergenic
CTGACGTGGAGTGCCGTTCT+GGG 0.320651 4_1:+51428936 None:intergenic
GGATGATAGTATCTGGTTAA+AGG 0.329999 4_1:-51424566 Msa0554180:CDS
CTATCTGGAGGAGCTTGTTC+TGG 0.339340 4_1:+51424193 None:intergenic
GGCATTTGCATTGGCTCCAT+TGG 0.343025 4_1:+51426890 None:intergenic
TGGAGTGCCGTTCTGGGGCT+TGG 0.345747 4_1:+51428942 None:intergenic
TGCACTGGAGTACTCATTAA+TGG 0.355560 4_1:+51425596 None:intergenic
GTCTACCAAACAAATCTATC+TGG 0.360641 4_1:+51424178 None:intergenic
AGTCTCAAGCTTTAGCCAAC+TGG 0.360859 4_1:-51426832 Msa0554180:CDS
GGCATTTACATTGGTTCCAT+TGG 0.361596 4_1:+51426941 None:intergenic
CAGTATCAATCAAGGACTTT+GGG 0.374042 4_1:+51424020 None:intergenic
AACAGGTTTCTTACAATTTG+TGG 0.374910 4_1:+51427345 None:intergenic
CCTACACCAGCGGGGTTGAC+AGG 0.380081 4_1:-51425387 Msa0554180:CDS
TTTGGTAGACATCTGTGTAT+AGG 0.382359 4_1:-51424165 Msa0554180:exon
GCGGGGTTGACAGGGTTTCC+AGG 0.404696 4_1:-51425378 Msa0554180:CDS
CATGCTATGGTCACTGTAAA+GGG 0.409378 4_1:-51428183 Msa0554180:intron
TCAGTATCAATCAAGGACTT+TGG 0.409504 4_1:+51424019 None:intergenic
CTAAAGCTTGAGACTGATAA+AGG 0.416164 4_1:+51426840 None:intergenic
GTATCTGGTTAAAGGAGAAA+TGG 0.421007 4_1:-51424558 Msa0554180:CDS
ATATTAGCTATGAAGAATTA+CGG 0.425378 4_1:-51427407 Msa0554180:CDS
GCTGAAAATCTTCTACAATC+TGG 0.429867 4_1:+51428230 None:intergenic
GTCAACACTTCCTGCGAGGC+AGG 0.433503 4_1:-51430509 Msa0554180:intron
ACATGCTATGGTCACTGTAA+AGG 0.440855 4_1:-51428184 Msa0554180:CDS
CCGAATAGATTTCCTGAGTT+GGG 0.442288 4_1:+51425444 None:intergenic
CTCCTCCAGATAGATTTGTT+TGG 0.444104 4_1:-51424183 Msa0554180:CDS
ATCTGGTGCTTGCAAGCCTC+AGG 0.444194 4_1:+51428247 None:intergenic
TGAACCCAACGGGTGGTTGT+TGG 0.446347 4_1:+51425340 None:intergenic
CTATTCGGCAGTGGAATCTC+AGG 0.451076 4_1:-51425429 Msa0554180:CDS
TTACATTGGTTCCATTGGAT+TGG 0.451087 4_1:+51426946 None:intergenic
AATTACAGAGTTATATCAAC+TGG 0.452469 4_1:-51424096 Msa0554180:three_prime_UTR
CAACCAGCCACTCAAAATAA+TGG 0.452627 4_1:-51426864 Msa0554180:CDS
CTTTGGATTCTTACATGCTA+TGG 0.454295 4_1:-51428196 Msa0554180:CDS
GTGACTTACAACTGAACATC+TGG 0.457439 4_1:+51425282 None:intergenic
CATTGTTACCTTTCAAAGCC+AGG 0.459429 4_1:+51426795 None:intergenic
CCCAACTCAGGAAATCTATT+CGG 0.463482 4_1:-51425444 Msa0554180:CDS
AGCCCCTTGAAAACAACAAA+TGG 0.465513 4_1:-51428978 Msa0554180:CDS
TATTAGCTATGAAGAATTAC+GGG 0.470165 4_1:-51427406 Msa0554180:CDS
TTGCATTGGCTCCATTGGAT+TGG 0.473295 4_1:+51426895 None:intergenic
ATTACGGGCAGCGGCTTATG+AGG 0.476038 4_1:-51427391 Msa0554180:CDS
AGTTCCAACAACCACCCGTT+GGG 0.480716 4_1:-51425344 Msa0554180:CDS
AACCCCTTTCCTACACCAGC+GGG 0.481599 4_1:-51425396 Msa0554180:CDS
AACCCCGCTGGTGTAGGAAA+GGG 0.485644 4_1:+51425393 None:intergenic
AGTGCTCCTTGTGACATTGT+TGG 0.492049 4_1:-51427432 Msa0554180:CDS
CCACAGACACATTCTCCACT+TGG 0.493241 4_1:+51424587 None:intergenic
GTCTCAAGCTTTAGCCAACT+GGG 0.494261 4_1:-51426831 Msa0554180:CDS
CTCTGTAATTCAACCAAGAA+AGG 0.494457 4_1:+51424109 None:intergenic
CCAATGGAACTAGGCTGCAC+TGG 0.496298 4_1:+51425581 None:intergenic
AAACTGATTTCGTGCAAGCT+AGG 0.507656 4_1:+51423906 None:intergenic
CCTCCACCTCCAATGGAACT+AGG 0.507796 4_1:+51425572 None:intergenic
CCAGTGCAGCCTAGTTCCAT+TGG 0.509632 4_1:-51425581 Msa0554180:CDS
CACTGAACCCTGGCTTTGAA+AGG 0.511359 4_1:-51426803 Msa0554180:intron
TTTGTTAAACTCAACCAACT+TGG 0.511788 4_1:+51427025 None:intergenic
GAGTTATATCAACTGGTGGA+TGG 0.513907 4_1:-51424089 Msa0554180:three_prime_UTR
GCCGAATAGATTTCCTGAGT+TGG 0.514471 4_1:+51425443 None:intergenic
AGAGGAATGACCTGCCTCGC+AGG 0.516229 4_1:+51430499 None:intergenic
ATACATACCTCCACCTCCAA+TGG 0.518617 4_1:+51425565 None:intergenic
AGTTATATCAACTGGTGGAT+GGG 0.522414 4_1:-51424088 Msa0554180:three_prime_UTR
TGGTTGAAAGGCATTTGCAT+TGG 0.523106 4_1:+51426881 None:intergenic
CTATGAAGAATTACGGGCAG+CGG 0.524187 4_1:-51427400 Msa0554180:CDS
TTAAAGGAGAAATGGAATCC+TGG 0.531099 4_1:-51424550 Msa0554180:CDS
GTGCAGCCTAGTTCCATTGG+AGG 0.531680 4_1:-51425578 Msa0554180:CDS
CCTAGTTCCATTGGAGGTGG+AGG 0.532586 4_1:-51425572 Msa0554180:intron
TGTCTGTGGATGATAGTATC+TGG 0.532717 4_1:-51424573 Msa0554180:CDS
AAACATATTACAATCCAAGT+TGG 0.534996 4_1:-51427039 Msa0554180:CDS
TAGAAGACTATTACCTCTCC+AGG 0.535337 4_1:+51424532 None:intergenic
CAGCCTAGTTCCATTGGAGG+TGG 0.537156 4_1:-51425575 Msa0554180:CDS
TGGAACTGGGAAGTAGAACC+TGG 0.538756 4_1:+51425360 None:intergenic
TTCAGCAAGAGAAACCACTT+TGG 0.543236 4_1:-51428213 Msa0554180:CDS
CTAGTGTTATTGAACCCAAC+GGG 0.544107 4_1:+51425330 None:intergenic
CAACCCCGCTGGTGTAGGAA+AGG 0.545368 4_1:+51425392 None:intergenic
GTTCAAAACTTCCAATCCAA+TGG 0.547317 4_1:-51426957 Msa0554180:CDS
TTGATTGTTTACAAGAAGAA+CGG 0.550402 4_1:-51430592 Msa0554180:five_prime_UTR
GCTTATGAGGATAATAAGAA+AGG 0.550923 4_1:-51427378 Msa0554180:CDS
CCTGTCAACCCCGCTGGTGT+AGG 0.552858 4_1:+51425387 None:intergenic
GGAAACCCTGTCAACCCCGC+TGG 0.553188 4_1:+51425381 None:intergenic
ATTGTAATCAGTATCAATCA+AGG 0.559423 4_1:+51424012 None:intergenic
CTACACCAGCGGGGTTGACA+GGG 0.559612 4_1:-51425386 Msa0554180:CDS
AACGGGTGGTTGTTGGAACT+GGG 0.561218 4_1:+51425347 None:intergenic
TGACGTGGAGTGCCGTTCTG+GGG 0.565499 4_1:+51428937 None:intergenic
ATTGTTACCTTTCAAAGCCA+GGG 0.569637 4_1:+51426796 None:intergenic
ACTCAAAACTTCCAATCCAA+TGG 0.572511 4_1:-51426906 Msa0554180:CDS
CAGTTCCAACAACCACCCGT+TGG 0.575425 4_1:-51425345 Msa0554180:CDS
AACAATCAACTTCTCACACC+AGG 0.581432 4_1:+51430606 None:intergenic
ACCCCGCTGGTGTAGGAAAG+GGG 0.586779 4_1:+51425394 None:intergenic
CTGGGTGCTTCACTGAACCC+TGG 0.589919 4_1:-51426813 Msa0554180:CDS
TCAGGAAATCTATTCGGCAG+TGG 0.590143 4_1:-51425438 Msa0554180:CDS
GTACTCATTAATGGTGCAGA+GGG 0.590273 4_1:+51425605 None:intergenic
CACAGACACATTCTCCACTT+GGG 0.605135 4_1:+51424588 None:intergenic
TACAGAGTTATATCAACTGG+TGG 0.607159 4_1:-51424093 Msa0554180:three_prime_UTR
GTTTGAAGTGTGAAGTGAAG+TGG 0.610923 4_1:-51430562 Msa0554180:five_prime_UTR
TTGAAGATGTACAGATCCTG+AGG 0.613427 4_1:-51428263 Msa0554180:intron
TGGTTGAAAGGCATTTACAT+TGG 0.615390 4_1:+51426932 None:intergenic
TTGCAGAAATGCGTCCCAAG+TGG 0.622726 4_1:-51424602 Msa0554180:intron
TTACAAGAAGAACGGTGTCG+CGG 0.629904 4_1:-51430584 Msa0554180:five_prime_UTR
TTGAAAACAACAAATGGAGT+CGG 0.631566 4_1:-51428972 Msa0554180:CDS
GCTAGTGTTATTGAACCCAA+CGG 0.631795 4_1:+51425329 None:intergenic
TCTTCATCCAAGCCCCAGAA+CGG 0.633134 4_1:-51428949 Msa0554180:CDS
TACCAAACAAATCTATCTGG+AGG 0.634565 4_1:+51424181 None:intergenic
TGCTGCCTGAAACATTGTAG+TGG 0.637731 4_1:+51425305 None:intergenic
GGTTCAGTGAAGCACCCAGT+TGG 0.640946 4_1:+51426817 None:intergenic
GTGTTATTGAACCCAACGGG+TGG 0.644954 4_1:+51425333 None:intergenic
TTCGGCAGTGGAATCTCAGG+TGG 0.654074 4_1:-51425426 Msa0554180:CDS
TGGATGGGCAACGAGAAATG+AGG 0.659581 4_1:-51424073 Msa0554180:three_prime_UTR
AGTACTCATTAATGGTGCAG+AGG 0.660040 4_1:+51425604 None:intergenic
GGAGAAATGGAATCCTGGAG+AGG 0.663151 4_1:-51424545 Msa0554180:intron
CAACCCCTTTCCTACACCAG+CGG 0.664582 4_1:-51425397 Msa0554180:CDS
ATTTGTCAACACTTCCTGCG+AGG 0.674428 4_1:-51430513 Msa0554180:CDS
ATATCTCCAACAATGTCACA+AGG 0.680130 4_1:+51427426 None:intergenic
CCAAGTGGAGAATGTGTCTG+TGG 0.682566 4_1:-51424587 Msa0554180:CDS
TAGCATGTAAGAATCCAAAG+TGG 0.688033 4_1:+51428199 None:intergenic
ATGGGCAACGAGAAATGAGG+AGG 0.688805 4_1:-51424070 Msa0554180:three_prime_UTR
GATTTGTTATCAGACTGACG+TGG 0.704707 4_1:+51428922 None:intergenic
ACCCCTTTCCTACACCAGCG+GGG 0.708861 4_1:-51425395 Msa0554180:CDS
ACGTTGAGAGAAGACGTCAG+AGG 0.742655 4_1:+51426978 None:intergenic
TGTATAGGCATGTGACACAG+CGG 0.754121 4_1:-51424150 Msa0554180:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAATATGTTGTTTT+TGG - chr4_1:51425264-51425283 Msa0554180:intron 10.0%
!!! AAATTGTATAGATTTTTGTT+CGG - chr4_1:51423915-51423934 Msa0554180:three_prime_UTR 15.0%
!!! ATTTTTAACTTTGAAAACAA+AGG + chr4_1:51425156-51425175 None:intergenic 15.0%
!! ATTACGTAATTATATTAACA+AGG + chr4_1:51425552-51425571 None:intergenic 15.0%
!! AATAATATATTGCTTAATCA+TGG - chr4_1:51426484-51426503 Msa0554180:intron 15.0%
!! AATTTACTAAAGAAATAAGT+AGG + chr4_1:51427389-51427408 None:intergenic 15.0%
!! GTAACAATATATATATTTCA+AGG + chr4_1:51427513-51427532 None:intergenic 15.0%
!! TGAAATATATATATTGTTAC+AGG - chr4_1:51427513-51427532 Msa0554180:intron 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + chr4_1:51428828-51428847 None:intergenic 15.0%
!! AATAATTAAAAAAATACACG+TGG - chr4_1:51428728-51428747 Msa0554180:intron 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+AGG - chr4_1:51428828-51428847 Msa0554180:intron 15.0%
!!! TTTGTAGTTTTTTTTCTTAA+GGG - chr4_1:51428829-51428848 Msa0554180:intron 15.0%
!! CAAATTATAACATTTATAAC+TGG + chr4_1:51429669-51429688 None:intergenic 15.0%
!! CAGTTATAAATGTTATAATT+TGG - chr4_1:51429667-51429686 Msa0554180:intron 15.0%
!!! ATATTTTAAAATTCAAGTGT+TGG - chr4_1:51430299-51430318 Msa0554180:intron 15.0%
!!! TATTTTAAAATTCAAGTGTT+GGG - chr4_1:51430300-51430319 Msa0554180:intron 15.0%
!!! TTGTTATACCTTTTTTTTAC+TGG - chr4_1:51423943-51423962 Msa0554180:three_prime_UTR 20.0%
!! AGAGAACATCTAATAATAAT+GGG - chr4_1:51424247-51424266 Msa0554180:intron 20.0%
!!! ATAATTCTATACTGTCTTTT+AGG - chr4_1:51424459-51424478 Msa0554180:intron 20.0%
!!! TAATTCTATACTGTCTTTTA+GGG - chr4_1:51424460-51424479 Msa0554180:intron 20.0%
!!! TTTTTTTTAAGAAGCTTAAC+TGG + chr4_1:51424738-51424757 None:intergenic 20.0%
!! TTTAATTAGCTATTTGTGTT+TGG - chr4_1:51425067-51425086 Msa0554180:intron 20.0%
!! TCAAAGTTAAAAATAGAACT+TGG - chr4_1:51425162-51425181 Msa0554180:intron 20.0%
!!! ATCATTTGTTTTAGTATTGA+TGG - chr4_1:51425570-51425589 Msa0554180:intron 20.0%
!!! TTTTCTATTCAGAAGTAAAA+GGG + chr4_1:51425834-51425853 None:intergenic 20.0%
!! TAAATATAATTAGATAGGGA+GGG + chr4_1:51426137-51426156 None:intergenic 20.0%
!! ATAAATATAATTAGATAGGG+AGG + chr4_1:51426138-51426157 None:intergenic 20.0%
!!! GGTATTATTTTTATGCATAA+GGG - chr4_1:51426426-51426445 Msa0554180:intron 20.0%
!! ATATTAGCTATGAAGAATTA+CGG - chr4_1:51427181-51427200 Msa0554180:intron 20.0%
!! ATTTGGATATTTCTTGATTT+AGG + chr4_1:51427871-51427890 None:intergenic 20.0%
!!! ATCTACTATTTGTTTTTGTT+TGG - chr4_1:51428036-51428055 Msa0554180:intron 20.0%
!!! TCTACTATTTGTTTTTGTTT+GGG - chr4_1:51428037-51428056 Msa0554180:intron 20.0%
!!! GTGTATTTTGTTTTTTTGAA+TGG - chr4_1:51428268-51428287 Msa0554180:intron 20.0%
!!! TTAATGTTAGTTTTTTGTTG+TGG - chr4_1:51428312-51428331 Msa0554180:intron 20.0%
!!! TAATGTTAGTTTTTTGTTGT+GGG - chr4_1:51428313-51428332 Msa0554180:intron 20.0%
!!! ATCTTGTTCCTTTATTTTAT+AGG - chr4_1:51428440-51428459 Msa0554180:intron 20.0%
!! CTATTAAGCCTATAAAATAA+AGG + chr4_1:51428451-51428470 None:intergenic 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + chr4_1:51428515-51428534 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG + chr4_1:51428827-51428846 None:intergenic 20.0%
!!! TTGTAGTTTTTTTTCTTAAG+GGG - chr4_1:51428830-51428849 Msa0554180:intron 20.0%
!! AATCATGAGAATATCAAAAT+AGG + chr4_1:51428904-51428923 None:intergenic 20.0%
!! AATCTTTAAACTGTAACATA+TGG + chr4_1:51429738-51429757 None:intergenic 20.0%
!!! GATTAAGAAGATTTTAATGT+TGG - chr4_1:51429754-51429773 Msa0554180:intron 20.0%
!!! ATACTTTTTCTTGAATCTTA+TGG - chr4_1:51429953-51429972 Msa0554180:intron 20.0%
!!! ATTTTAAAATTCAAGTGTTG+GGG - chr4_1:51430301-51430320 Msa0554180:intron 20.0%
!! AAAAAAAACACATAACTAAG+GGG + chr4_1:51430602-51430621 None:intergenic 20.0%
!! GAAAAAAAACACATAACTAA+GGG + chr4_1:51430603-51430622 None:intergenic 20.0%
!! AGAAAAAAAACACATAACTA+AGG + chr4_1:51430604-51430623 None:intergenic 20.0%
!! TTGTAACATGACAAAAATTA+TGG - chr4_1:51430716-51430735 Msa0554180:five_prime_UTR 20.0%
!!! ACAGAAAAATTTCAGTTTTA+GGG - chr4_1:51430746-51430765 Msa0554180:five_prime_UTR 20.0%
!!! CTTTTTCACCAGTAAAAAAA+AGG + chr4_1:51423954-51423973 None:intergenic 25.0%
! TTGATTGTTTACAAGAAGAA+CGG - chr4_1:51423996-51424015 Msa0554180:three_prime_UTR 25.0%
!! CATAATCGATTATGTGTTTT+CGG - chr4_1:51424136-51424155 Msa0554180:three_prime_UTR 25.0%
! CAGAGAACATCTAATAATAA+TGG - chr4_1:51424246-51424265 Msa0554180:intron 25.0%
!!! ACATCTAATAATAATGGGTT+TGG - chr4_1:51424252-51424271 Msa0554180:intron 25.0%
! TAGTATTCAAGACTATCTAA+TGG - chr4_1:51424496-51424515 Msa0554180:intron 25.0%
! ACTCTCAAGAGTTTATTAAA+TGG + chr4_1:51425027-51425046 None:intergenic 25.0%
!!! AACATTTTTTTTGAAACGCA+CGG + chr4_1:51425111-51425130 None:intergenic 25.0%
! TTAAAAATAGAACTTGGAGA+TGG - chr4_1:51425168-51425187 Msa0554180:intron 25.0%
! ACTGGTTATGTTAATTTCTA+GGG + chr4_1:51425323-51425342 None:intergenic 25.0%
!! TACTGGTTATGTTAATTTCT+AGG + chr4_1:51425324-51425343 None:intergenic 25.0%
! TCACAATCTGTATATACTAT+GGG + chr4_1:51425463-51425482 None:intergenic 25.0%
! TTCACAATCTGTATATACTA+TGG + chr4_1:51425464-51425483 None:intergenic 25.0%
! TAGGCATGTATTATAAACAA+TGG + chr4_1:51425514-51425533 None:intergenic 25.0%
!! GTTTTCTATTCAGAAGTAAA+AGG + chr4_1:51425835-51425854 None:intergenic 25.0%
! AATAGAAAACATAAAAAGCC+AGG - chr4_1:51425845-51425864 Msa0554180:intron 25.0%
! AAAAATGACTACAAATGTGA+AGG + chr4_1:51426084-51426103 None:intergenic 25.0%
!!! TCACATTTGTAGTCATTTTT+CGG - chr4_1:51426084-51426103 Msa0554180:intron 25.0%
! AAATATAATTAGATAGGGAG+GGG + chr4_1:51426136-51426155 None:intergenic 25.0%
! GTGGAAAAAGAAAAAGAAAA+AGG + chr4_1:51426241-51426260 None:intergenic 25.0%
! TTATATACTTCACTAAAGCT+TGG - chr4_1:51426293-51426312 Msa0554180:intron 25.0%
!!! GGGTATTATTTTTATGCATA+AGG - chr4_1:51426425-51426444 Msa0554180:intron 25.0%
! AATATATTGCTTAATCATGG+AGG - chr4_1:51426487-51426506 Msa0554180:intron 25.0%
! TGTTAAATGTGAAGAATAGA+TGG + chr4_1:51426622-51426641 None:intergenic 25.0%
! AGGAAATGTATAATGATTAG+CGG + chr4_1:51426654-51426673 None:intergenic 25.0%
!!! TGATTTTCAAGGATAAGTAA+GGG + chr4_1:51426692-51426711 None:intergenic 25.0%
!!! ATGATTTTCAAGGATAAGTA+AGG + chr4_1:51426693-51426712 None:intergenic 25.0%
!!! AACTTCTGAAATGATTTTCA+AGG + chr4_1:51426703-51426722 None:intergenic 25.0%
! CTTTGTAATGCAAATGAAAA+TGG + chr4_1:51426760-51426779 None:intergenic 25.0%
! TGGAATTTGAATGAAAAATG+TGG + chr4_1:51426823-51426842 None:intergenic 25.0%
! AATGCTCTATTAAAGTTTGT+TGG + chr4_1:51426843-51426862 None:intergenic 25.0%
! ACAAGGAATAAAAAAAGTTC+CGG - chr4_1:51426913-51426932 Msa0554180:CDS 25.0%
! TATTAGCTATGAAGAATTAC+GGG - chr4_1:51427182-51427201 Msa0554180:intron 25.0%
! AATCTCTTAACATCACAAAT+AGG + chr4_1:51427296-51427315 None:intergenic 25.0%
! ACTAAAGAAATAAGTAGGTA+GGG + chr4_1:51427384-51427403 None:intergenic 25.0%
! TACTAAAGAAATAAGTAGGT+AGG + chr4_1:51427385-51427404 None:intergenic 25.0%
! AAACATATTACAATCCAAGT+TGG - chr4_1:51427549-51427568 Msa0554180:intron 25.0%
!! TTTCTTCATTTTCAATTGTG+TGG - chr4_1:51427832-51427851 Msa0554180:intron 25.0%
!!! ATATCCAAATTTTAGCTAAC+AGG - chr4_1:51427881-51427900 Msa0554180:intron 25.0%
!!! TTTGTTTTTGTTTGGGATTA+TGG - chr4_1:51428044-51428063 Msa0554180:intron 25.0%
! CATGTATCTTTCTATTATAG+TGG - chr4_1:51428094-51428113 Msa0554180:intron 25.0%
! CTTTCTATTATAGTGGTTTA+AGG - chr4_1:51428101-51428120 Msa0554180:intron 25.0%
!!! CATCATTTTAGGTATGTAAT+CGG + chr4_1:51428212-51428231 None:intergenic 25.0%
!! CATAAGAAAACCATCATTTT+AGG + chr4_1:51428223-51428242 None:intergenic 25.0%
!! AATGATGGTTTTCTTATGTT+TGG - chr4_1:51428225-51428244 Msa0554180:CDS 25.0%
! ACAAGATATAAACATTGCAT+GGG + chr4_1:51428427-51428446 None:intergenic 25.0%
! AACAAGATATAAACATTGCA+TGG + chr4_1:51428428-51428447 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + chr4_1:51428514-51428533 None:intergenic 25.0%
!!! TTTTTTTTTATGTCTGCTCT+TGG - chr4_1:51428926-51428945 Msa0554180:CDS 25.0%
!! GAAAGTTGTACAACTATTTT+TGG + chr4_1:51429414-51429433 None:intergenic 25.0%
! TATGTATGTATGTATCACAA+AGG + chr4_1:51430166-51430185 None:intergenic 25.0%
! GATACATACATACATAGTAT+TGG - chr4_1:51430170-51430189 Msa0554180:intron 25.0%
!! GATATGTTTTCTCAATTTGT+GGG - chr4_1:51430323-51430342 Msa0554180:intron 25.0%
! AATTACAGAGTTATATCAAC+TGG - chr4_1:51430492-51430511 Msa0554180:intron 25.0%
! ATTGTAATCAGTATCAATCA+AGG + chr4_1:51430579-51430598 None:intergenic 25.0%
!!! ACATATGACATGATTTTTTC+AGG + chr4_1:51430628-51430647 None:intergenic 25.0%
! TGAAAAAATCATGTCATATG+TGG - chr4_1:51430627-51430646 Msa0554180:five_prime_UTR 25.0%
! TTGTCATGTTACAATGAAAA+AGG + chr4_1:51430710-51430729 None:intergenic 25.0%
!! AACTGAAATTTTTCTGTCTT+AGG + chr4_1:51430743-51430762 None:intergenic 25.0%
!! GACAGAAAAATTTCAGTTTT+AGG - chr4_1:51430745-51430764 Msa0554180:five_prime_UTR 25.0%
!!! CAGAAAAATTTCAGTTTTAG+GGG - chr4_1:51430747-51430766 Msa0554180:five_prime_UTR 25.0%
!! TCTAATAATAATGGGTTTGG+TGG - chr4_1:51424255-51424274 Msa0554180:intron 30.0%
! CAACAAAATACAAACCCTTT+TGG - chr4_1:51424291-51424310 Msa0554180:intron 30.0%
! AATACAAACCCTTTTGGATT+TGG - chr4_1:51424297-51424316 Msa0554180:intron 30.0%
TTTGTGAACCAAAACCAAAA+GGG + chr4_1:51424362-51424381 None:intergenic 30.0%
! TTTTGTGAACCAAAACCAAA+AGG + chr4_1:51424363-51424382 None:intergenic 30.0%
AAAACACTTCTCACTCAAAT+GGG - chr4_1:51424379-51424398 Msa0554180:intron 30.0%
AGTAAATAAGAACCTGGAAT+TGG + chr4_1:51424431-51424450 None:intergenic 30.0%
GAAAAGAGTAAATAAGAACC+TGG + chr4_1:51424437-51424456 None:intergenic 30.0%
TAGGAAATACTAATACATCG+AGG - chr4_1:51424611-51424630 Msa0554180:intron 30.0%
CTGAATGTAATCACATTTGT+TGG - chr4_1:51424786-51424805 Msa0554180:intron 30.0%
! ATCAAGTTGTTTATCCAAAC+AGG - chr4_1:51424976-51424995 Msa0554180:intron 30.0%
! TCAAGTTGTTTATCCAAACA+GGG - chr4_1:51424977-51424996 Msa0554180:intron 30.0%
AATCTGTATATACTATGGGA+TGG + chr4_1:51425459-51425478 None:intergenic 30.0%
AAGGAACACAACAATGATAT+AGG + chr4_1:51425533-51425552 None:intergenic 30.0%
!!! ACTCCATTTGTTGTTTTCAA+GGG + chr4_1:51425616-51425635 None:intergenic 30.0%
TTGAAAACAACAAATGGAGT+CGG - chr4_1:51425616-51425635 Msa0554180:intron 30.0%
TGTTTATGTTTGATGAGAGA+TGG + chr4_1:51425733-51425752 None:intergenic 30.0%
AAAATAATGCCACCTATTGT+TGG - chr4_1:51425801-51425820 Msa0554180:intron 30.0%
ACATCAAAGACAAAATCCTA+AGG + chr4_1:51425916-51425935 None:intergenic 30.0%
!!! CACATTTGTAGTCATTTTTC+GGG - chr4_1:51426085-51426104 Msa0554180:intron 30.0%
!!! ACATTTGTAGTCATTTTTCG+GGG - chr4_1:51426086-51426105 Msa0554180:intron 30.0%
ACAAACATTGATAAGGAACA+TGG + chr4_1:51426210-51426229 None:intergenic 30.0%
ATGTTCCTTATCAATGTTTG+TGG - chr4_1:51426209-51426228 Msa0554180:intron 30.0%
! TTTCTTTTTCCACTTTGCAT+TGG - chr4_1:51426248-51426267 Msa0554180:intron 30.0%
! TTCTTTTTCCACTTTGCATT+GGG - chr4_1:51426249-51426268 Msa0554180:intron 30.0%
! TCAAAACCTCTTTCATCTTT+TGG + chr4_1:51426731-51426750 None:intergenic 30.0%
!! AAAGATGAAAGAGGTTTTGA+TGG - chr4_1:51426731-51426750 Msa0554180:intron 30.0%
!! AAGATGAAAGAGGTTTTGAT+GGG - chr4_1:51426732-51426751 Msa0554180:intron 30.0%
! TTCAGGTTCATTTCAATAGA+TGG + chr4_1:51426970-51426989 None:intergenic 30.0%
! TCTCTTTTCAGTATAGAAGT+TGG + chr4_1:51427018-51427037 None:intergenic 30.0%
TCAAGAGTGGAAAATTGATT+AGG + chr4_1:51427042-51427061 None:intergenic 30.0%
TCTTAACTAGTGCACTAATA+CGG - chr4_1:51427083-51427102 Msa0554180:intron 30.0%
GCTTATGAGGATAATAAGAA+AGG - chr4_1:51427210-51427229 Msa0554180:intron 30.0%
AACAGGTTTCTTACAATTTG+TGG + chr4_1:51427246-51427265 None:intergenic 30.0%
TTTGTTAAACTCAACCAACT+TGG + chr4_1:51427566-51427585 None:intergenic 30.0%
!!! TAAAGGACCATTATTTTGAG+TGG + chr4_1:51427734-51427753 None:intergenic 30.0%
TTTGCCTGTTAGCTAAAATT+TGG + chr4_1:51427888-51427907 None:intergenic 30.0%
TAGATAGCAGTTGTAGAAAA+AGG + chr4_1:51428021-51428040 None:intergenic 30.0%
ATTATGGTGTGATTGTCAAA+AGG - chr4_1:51428060-51428079 Msa0554180:intron 30.0%
TTATGGTGTGATTGTCAAAA+GGG - chr4_1:51428061-51428080 Msa0554180:intron 30.0%
CGATTACATACCTAAAATGA+TGG - chr4_1:51428210-51428229 Msa0554180:CDS 30.0%
TTGCAACTTCTTGAAACTTA+GGG + chr4_1:51428485-51428504 None:intergenic 30.0%
ATTGCAACTTCTTGAAACTT+AGG + chr4_1:51428486-51428505 None:intergenic 30.0%
! GTTTCAAGAAGTTGCAATTT+TGG - chr4_1:51428488-51428507 Msa0554180:intron 30.0%
CTGTTTGTAACTTTCTTGTT+AGG - chr4_1:51428960-51428979 Msa0554180:CDS 30.0%
TACAGTTTATCACAACATCA+TGG + chr4_1:51429109-51429128 None:intergenic 30.0%
ATGATGTTGTGATAAACTGT+AGG - chr4_1:51429108-51429127 Msa0554180:intron 30.0%
GGATTTGATTAAATTGTCAC+AGG + chr4_1:51429372-51429391 None:intergenic 30.0%
GGTTGACTATTGAATGAAAA+TGG + chr4_1:51429393-51429412 None:intergenic 30.0%
ATTGGGTCATTTACTTTGTA+GGG + chr4_1:51429642-51429661 None:intergenic 30.0%
AATTGGGTCATTTACTTTGT+AGG + chr4_1:51429643-51429662 None:intergenic 30.0%
CATTTATAACTGGTGCAATT+GGG + chr4_1:51429659-51429678 None:intergenic 30.0%
ACATTTATAACTGGTGCAAT+TGG + chr4_1:51429660-51429679 None:intergenic 30.0%
TCAATACTAACAAAAGTTGG+AGG + chr4_1:51429842-51429861 None:intergenic 30.0%
GGTTCAATACTAACAAAAGT+TGG + chr4_1:51429845-51429864 None:intergenic 30.0%
! TTGTTAGTATTGAACCTACT+TGG - chr4_1:51429849-51429868 Msa0554180:intron 30.0%
! TCACAAAGGAAATTTTGTCA+TGG + chr4_1:51430152-51430171 None:intergenic 30.0%
TATTGGATAGAATCTGCAAT+AGG - chr4_1:51430187-51430206 Msa0554180:intron 30.0%
!! TTCTGCCAAATTTTAATGCT+CGG + chr4_1:51430255-51430274 None:intergenic 30.0%
! GGATATGTTTTCTCAATTTG+TGG - chr4_1:51430322-51430341 Msa0554180:intron 30.0%
GGTGAAAAAGAATTGAAACC+TGG - chr4_1:51423964-51423983 Msa0554180:three_prime_UTR 35.0%
CAAGATGTAGTATAGAGAAG+AGG + chr4_1:51424110-51424129 None:intergenic 35.0%
CTCTTCTCTATACTACATCT+TGG - chr4_1:51424108-51424127 Msa0554180:three_prime_UTR 35.0%
! TCATGTTTCAGGTGTAGATT+TGG - chr4_1:51424186-51424205 Msa0554180:CDS 35.0%
!! AATAATAATGGGTTTGGTGG+TGG - chr4_1:51424258-51424277 Msa0554180:intron 35.0%
AGGTAGAACCAAATCCAAAA+GGG + chr4_1:51424308-51424327 None:intergenic 35.0%
CAAAACACTTCTCACTCAAA+TGG - chr4_1:51424378-51424397 Msa0554180:intron 35.0%
AAACACTTCTCACTCAAATG+GGG - chr4_1:51424380-51424399 Msa0554180:intron 35.0%
!! TTTGGTTTGAAATCAGAACG+AGG + chr4_1:51424408-51424427 None:intergenic 35.0%
TTTCAAACCAAACCAATTCC+AGG - chr4_1:51424416-51424435 Msa0554180:intron 35.0%
ATAAGAACCTGGAATTGGTT+TGG + chr4_1:51424426-51424445 None:intergenic 35.0%
!!! ACTGTCTTTTAGGGTCTATT+TGG - chr4_1:51424469-51424488 Msa0554180:intron 35.0%
AATGGCATAAGCAGACTATT+TGG - chr4_1:51424514-51424533 Msa0554180:intron 35.0%
CATAAGCAGACTATTTGGTA+GGG - chr4_1:51424519-51424538 Msa0554180:intron 35.0%
TCAATAAGCTCTTCATGACT+AGG - chr4_1:51424592-51424611 Msa0554180:CDS 35.0%
! GTAATCACATTTGTTGGTGT+TGG - chr4_1:51424792-51424811 Msa0554180:intron 35.0%
!! ACACTTTTGATTGAAGGTGT+AGG + chr4_1:51424830-51424849 None:intergenic 35.0%
! ACACCTTCAATCAAAAGTGT+TGG - chr4_1:51424830-51424849 Msa0554180:intron 35.0%
ACTCTTGAGAGTTTATGTCA+TGG - chr4_1:51425035-51425054 Msa0554180:intron 35.0%
TTGAGAGTTTATGTCATGGA+TGG - chr4_1:51425039-51425058 Msa0554180:intron 35.0%
ATGTTGAATAGCTCTTTGCA+TGG - chr4_1:51425126-51425145 Msa0554180:intron 35.0%
AATAGAACTTGGAGATGGAT+AGG - chr4_1:51425173-51425192 Msa0554180:intron 35.0%
ATAGAACTTGGAGATGGATA+GGG - chr4_1:51425174-51425193 Msa0554180:intron 35.0%
!!! TTTTGGCAATAGTTTTGAGC+AGG - chr4_1:51425281-51425300 Msa0554180:intron 35.0%
ATAGACAGATGTTAAGCTAC+TGG + chr4_1:51425341-51425360 None:intergenic 35.0%
!!! CTCCATTTGTTGTTTTCAAG+GGG + chr4_1:51425615-51425634 None:intergenic 35.0%
!!! GACTCCATTTGTTGTTTTCA+AGG + chr4_1:51425617-51425636 None:intergenic 35.0%
! AAGGGCATATATCCAACAAT+AGG + chr4_1:51425816-51425835 None:intergenic 35.0%
GTTATAGACTCATGATCCTT+AGG - chr4_1:51425897-51425916 Msa0554180:intron 35.0%
AAGAGCCACAAACATTGATA+AGG + chr4_1:51426217-51426236 None:intergenic 35.0%
GCTGAAAATCTTCTACAATC+TGG + chr4_1:51426361-51426380 None:intergenic 35.0%
TAGCATGTAAGAATCCAAAG+TGG + chr4_1:51426392-51426411 None:intergenic 35.0%
CTTTGGATTCTTACATGCTA+TGG - chr4_1:51426392-51426411 Msa0554180:intron 35.0%
!! TGCACAACTTTTGAGGAATA+TGG + chr4_1:51426558-51426577 None:intergenic 35.0%
! GATAAGTAAGGGATTAGCAA+GGG + chr4_1:51426681-51426700 None:intergenic 35.0%
!! AGATGAAAGAGGTTTTGATG+GGG - chr4_1:51426733-51426752 Msa0554180:intron 35.0%
TCAGTTCACAGTTTGTAACA+AGG - chr4_1:51426896-51426915 Msa0554180:CDS 35.0%
!! AGCTATTTCTCTTTCAAGAG+TGG + chr4_1:51427055-51427074 None:intergenic 35.0%
ATATCTCCAACAATGTCACA+AGG + chr4_1:51427165-51427184 None:intergenic 35.0%
AACTGTAGGCATATTAGAAC+AGG + chr4_1:51427263-51427282 None:intergenic 35.0%
CTAATATGCCTACAGTTTCA+CGG - chr4_1:51427266-51427285 Msa0554180:intron 35.0%
AAATAAGTAGGTAGGGCTTA+AGG + chr4_1:51427377-51427396 None:intergenic 35.0%
TACTCATGTTTGCAACTACA+AGG - chr4_1:51427452-51427471 Msa0554180:intron 35.0%
TATGTTCATGCGATTGTCTA+TGG - chr4_1:51427482-51427501 Msa0554180:intron 35.0%
GTTCAAAACTTCCAATCCAA+TGG - chr4_1:51427631-51427650 Msa0554180:intron 35.0%
!! TTACATTGGTTCCATTGGAT+TGG + chr4_1:51427645-51427664 None:intergenic 35.0%
!! TGGTTGAAAGGCATTTACAT+TGG + chr4_1:51427659-51427678 None:intergenic 35.0%
!!! ATTGGATTGGAAGTTTTGAG+TGG + chr4_1:51427683-51427702 None:intergenic 35.0%
ACTCAAAACTTCCAATCCAA+TGG - chr4_1:51427682-51427701 Msa0554180:intron 35.0%
CTAAAGCTTGAGACTGATAA+AGG + chr4_1:51427751-51427770 None:intergenic 35.0%
ATTGTTACCTTTCAAAGCCA+GGG + chr4_1:51427795-51427814 None:intergenic 35.0%
CAAAGAGCTTAACTGCTATA+CGG - chr4_1:51427909-51427928 Msa0554180:intron 35.0%
ATCGTATAGAGATATTGACG+AGG - chr4_1:51427938-51427957 Msa0554180:intron 35.0%
AAAGTAGGTCACAAACAATC+AGG + chr4_1:51427964-51427983 None:intergenic 35.0%
TGTGACCTACTTTCTTTAGT+TGG - chr4_1:51427971-51427990 Msa0554180:intron 35.0%
TGCAACCAACTAAAGAAAGT+AGG + chr4_1:51427979-51427998 None:intergenic 35.0%
!!! TGTTAGTTTTTTGTTGTGGG+TGG - chr4_1:51428316-51428335 Msa0554180:intron 35.0%
!!! GTTAGTTTTTTGTTGTGGGT+GGG - chr4_1:51428317-51428336 Msa0554180:intron 35.0%
!!! TTAGTTTTTTGTTGTGGGTG+GGG - chr4_1:51428318-51428337 Msa0554180:intron 35.0%
TGCAACTTCTTGAAACTTAG+GGG + chr4_1:51428484-51428503 None:intergenic 35.0%
! GTTTCAAGAAGTTGCGATTT+TGG + chr4_1:51428856-51428875 None:intergenic 35.0%
ATCGCAACTTCTTGAAACTT+AGG - chr4_1:51428858-51428877 Msa0554180:intron 35.0%
TCGCAACTTCTTGAAACTTA+GGG - chr4_1:51428859-51428878 Msa0554180:intron 35.0%
TGAAAATGCTCAAGGTCAAT+GGG + chr4_1:51429488-51429507 None:intergenic 35.0%
CAACTATCTGAAAATGCTCA+AGG + chr4_1:51429496-51429515 None:intergenic 35.0%
!! GTGAATTACATAAGAGTGTC+AGG + chr4_1:51429560-51429579 None:intergenic 35.0%
! TTTAATGTTGGTAGAGATGC+TGG - chr4_1:51429766-51429785 Msa0554180:intron 35.0%
GGATGATAGTATCTGGTTAA+AGG - chr4_1:51430022-51430041 Msa0554180:intron 35.0%
GTATCTGGTTAAAGGAGAAA+TGG - chr4_1:51430030-51430049 Msa0554180:intron 35.0%
TTAAAGGAGAAATGGAATCC+TGG - chr4_1:51430038-51430057 Msa0554180:intron 35.0%
TTGGGAATAAGTGTCTATTC+AGG - chr4_1:51430095-51430114 Msa0554180:intron 35.0%
! GAATCTGCAATAGGATCTTT+TGG - chr4_1:51430196-51430215 Msa0554180:intron 35.0%
TACCAAACAAATCTATCTGG+AGG + chr4_1:51430410-51430429 None:intergenic 35.0%
GTCTACCAAACAAATCTATC+TGG + chr4_1:51430413-51430432 None:intergenic 35.0%
TTTGGTAGACATCTGTGTAT+AGG - chr4_1:51430423-51430442 Msa0554180:intron 35.0%
!!! CGTATTTTTAGGTCCTTTCT+TGG - chr4_1:51430466-51430485 Msa0554180:intron 35.0%
CTCTGTAATTCAACCAAGAA+AGG + chr4_1:51430482-51430501 None:intergenic 35.0%
TACAGAGTTATATCAACTGG+TGG - chr4_1:51430495-51430514 Msa0554180:intron 35.0%
! AGTTATATCAACTGGTGGAT+GGG - chr4_1:51430500-51430519 Msa0554180:intron 35.0%
CAGTATCAATCAAGGACTTT+GGG + chr4_1:51430571-51430590 None:intergenic 35.0%
TCAGTATCAATCAAGGACTT+TGG + chr4_1:51430572-51430591 None:intergenic 35.0%
AACAATCAACTTCTCACACC+AGG + chr4_1:51423985-51424004 None:intergenic 40.0%
! GTTTGAAGTGTGAAGTGAAG+TGG - chr4_1:51424026-51424045 Msa0554180:three_prime_UTR 40.0%
!! GCGTTTGTTGTTCATGTTTC+AGG - chr4_1:51424175-51424194 Msa0554180:exon 40.0%
GAGGTAGAACCAAATCCAAA+AGG + chr4_1:51424309-51424328 None:intergenic 40.0%
!! CTTTTGTTGCTGGTTGTTAG+AGG + chr4_1:51424334-51424353 None:intergenic 40.0%
! CAACAAAAGACCAACCCTTT+TGG - chr4_1:51424345-51424364 Msa0554180:intron 40.0%
!!! AAGACCAACCCTTTTGGTTT+TGG - chr4_1:51424351-51424370 Msa0554180:intron 40.0%
TGAACCAAAACCAAAAGGGT+TGG + chr4_1:51424358-51424377 None:intergenic 40.0%
GCATAAGCAGACTATTTGGT+AGG - chr4_1:51424518-51424537 Msa0554180:intron 40.0%
AGACTATTTGGTAGGGCTTA+TGG - chr4_1:51424526-51424545 Msa0554180:intron 40.0%
GAATCAAACCCAAGACCTTA+AGG + chr4_1:51424692-51424711 None:intergenic 40.0%
!! GCACCAACACTTTTGATTGA+AGG + chr4_1:51424836-51424855 None:intergenic 40.0%
GTTTAGACTAAGACCCTGTT+TGG + chr4_1:51424993-51425012 None:intergenic 40.0%
TTACGAATCAAAGAGAGAGC+AGG - chr4_1:51425197-51425216 Msa0554180:intron 40.0%
TACGAATCAAAGAGAGAGCA+GGG - chr4_1:51425198-51425217 Msa0554180:intron 40.0%
AGCCCCTTGAAAACAACAAA+TGG - chr4_1:51425610-51425629 Msa0554180:intron 40.0%
!! GATTTGTTATCAGACTGACG+TGG + chr4_1:51425669-51425688 None:intergenic 40.0%
AGTGTAGTTTCAACTGAGCA+CGG - chr4_1:51425766-51425785 Msa0554180:intron 40.0%
GGCATATATCCAACAATAGG+TGG + chr4_1:51425813-51425832 None:intergenic 40.0%
TATGCACAGTGTAGGTGTTT+AGG + chr4_1:51425871-51425890 None:intergenic 40.0%
ACTCTGTATATGCACAGTGT+AGG + chr4_1:51425879-51425898 None:intergenic 40.0%
ATGCACTTTGGCTGAAACAA+AGG + chr4_1:51425976-51425995 None:intergenic 40.0%
GAAATGAACCCAATGCAAAG+TGG + chr4_1:51426260-51426279 None:intergenic 40.0%
TTGAAGATGTACAGATCCTG+AGG - chr4_1:51426325-51426344 Msa0554180:intron 40.0%
TTCAGCAAGAGAAACCACTT+TGG - chr4_1:51426375-51426394 Msa0554180:intron 40.0%
ACATGCTATGGTCACTGTAA+AGG - chr4_1:51426404-51426423 Msa0554180:intron 40.0%
CATGCTATGGTCACTGTAAA+GGG - chr4_1:51426405-51426424 Msa0554180:intron 40.0%
GGATCTTTGCTAACTGCATT+AGG + chr4_1:51426537-51426556 None:intergenic 40.0%
ATTCCTCAAAAGTTGTGCAG+TGG - chr4_1:51426559-51426578 Msa0554180:intron 40.0%
! GGATAAGTAAGGGATTAGCA+AGG + chr4_1:51426682-51426701 None:intergenic 40.0%
TGCTGTCCAAAAGATGAAAG+AGG - chr4_1:51426722-51426741 Msa0554180:intron 40.0%
GCATTACAAAGCCAAGTGAT+TGG - chr4_1:51426769-51426788 Msa0554180:intron 40.0%
CCAAGCAAATTCCAATCACT+TGG + chr4_1:51426783-51426802 None:intergenic 40.0%
! CCAAGTGATTGGAATTTGCT+TGG - chr4_1:51426780-51426799 Msa0554180:intron 40.0%
GTTACAAACTGTGAACTGAC+TGG + chr4_1:51426895-51426914 None:intergenic 40.0%
TGAATGCTGTATTGCCCATT+GGG - chr4_1:51426938-51426957 Msa0554180:CDS 40.0%
ATAGATGGTGCATTCCCAAT+GGG + chr4_1:51426955-51426974 None:intergenic 40.0%
AATAGATGGTGCATTCCCAA+TGG + chr4_1:51426956-51426975 None:intergenic 40.0%
AACCTGAAAACATCACCTCA+AGG - chr4_1:51426982-51427001 Msa0554180:CDS 40.0%
! TTCCTTGAGGTGATGTTTTC+AGG + chr4_1:51426987-51427006 None:intergenic 40.0%
TAGGAATTCCGTGAAACTGT+AGG + chr4_1:51427277-51427296 None:intergenic 40.0%
!! GGCATTTACATTGGTTCCAT+TGG + chr4_1:51427650-51427669 None:intergenic 40.0%
!! TGGTTGAAAGGCATTTGCAT+TGG + chr4_1:51427710-51427729 None:intergenic 40.0%
!! ATTTTGAGTGGCTGGTTGAA+AGG + chr4_1:51427722-51427741 None:intergenic 40.0%
CAACCAGCCACTCAAAATAA+TGG - chr4_1:51427724-51427743 Msa0554180:intron 40.0%
CATTGTTACCTTTCAAAGCC+AGG + chr4_1:51427796-51427815 None:intergenic 40.0%
AGAAAAAGGAATCCCTGTAG+AGG + chr4_1:51428007-51428026 None:intergenic 40.0%
CAAGTTCTGTTGAATGACCT+AGG - chr4_1:51428169-51428188 Msa0554180:intron 40.0%
!!! TAGTTTTTTGTTGTGGGTGG+GGG - chr4_1:51428319-51428338 Msa0554180:intron 40.0%
ATATAAGGTGGTTGAGGTGT+GGG + chr4_1:51428381-51428400 None:intergenic 40.0%
GCAACTTCTTGAAACTTAGG+GGG + chr4_1:51428861-51428880 None:intergenic 40.0%
! ACCGAGTCAAAATTGGCTTA+GGG - chr4_1:51428768-51428787 Msa0554180:intron 40.0%
CGCAACTTCTTGAAACTTAG+GGG - chr4_1:51428860-51428879 Msa0554180:intron 40.0%
GCAACTTCTTGAAACTTAGG+GGG - chr4_1:51428861-51428880 Msa0554180:intron 40.0%
TTATGTCTGCTCTTGGCATA+TGG - chr4_1:51428933-51428952 Msa0554180:CDS 40.0%
GTACTCATTAATGGTGCAGA+GGG + chr4_1:51428986-51429005 None:intergenic 40.0%
AGTACTCATTAATGGTGCAG+AGG + chr4_1:51428987-51429006 None:intergenic 40.0%
! TGCACTGGAGTACTCATTAA+TGG + chr4_1:51428995-51429014 None:intergenic 40.0%
CACAACATCATGGTCAAACA+AGG + chr4_1:51429099-51429118 None:intergenic 40.0%
!!! AACTTTTTCACACCCAACTC+AGG - chr4_1:51429132-51429151 Msa0554180:intron 40.0%
CCGAATAGATTTCCTGAGTT+GGG + chr4_1:51429147-51429166 None:intergenic 40.0%
CCCAACTCAGGAAATCTATT+CGG - chr4_1:51429144-51429163 Msa0554180:intron 40.0%
! CTAGTGTTATTGAACCCAAC+GGG + chr4_1:51429261-51429280 None:intergenic 40.0%
! GCTAGTGTTATTGAACCCAA+CGG + chr4_1:51429262-51429281 None:intergenic 40.0%
TAGCTCCACTACAATGTTTC+AGG - chr4_1:51429278-51429297 Msa0554180:intron 40.0%
GTGACTTACAACTGAACATC+TGG + chr4_1:51429309-51429328 None:intergenic 40.0%
CTGAAAATGCTCAAGGTCAA+TGG + chr4_1:51429489-51429508 None:intergenic 40.0%
GAAAGTTAGTGCTGCAACAA+CGG + chr4_1:51429883-51429902 None:intergenic 40.0%
TTGTTGCAGCACTAACTTTC+TGG - chr4_1:51429883-51429902 Msa0554180:intron 40.0%
TGTTGCAGCACTAACTTTCT+GGG - chr4_1:51429884-51429903 Msa0554180:intron 40.0%
TGTCTGTGGATGATAGTATC+TGG - chr4_1:51430015-51430034 Msa0554180:intron 40.0%
TAGAAGACTATTACCTCTCC+AGG + chr4_1:51430059-51430078 None:intergenic 40.0%
GAGAGGTAATAGTCTTCTAC+TGG - chr4_1:51430060-51430079 Msa0554180:intron 40.0%
ACTTATTCCCAACCTCAACA+AGG + chr4_1:51430087-51430106 None:intergenic 40.0%
CGTCTCCGAGCATTAAAATT+TGG - chr4_1:51430247-51430266 Msa0554180:intron 40.0%
! CTCCTCCAGATAGATTTGTT+TGG - chr4_1:51430405-51430424 Msa0554180:intron 40.0%
! CAGCGGTTAAGCGTATTTTT+AGG - chr4_1:51430455-51430474 Msa0554180:intron 40.0%
GAGTTATATCAACTGGTGGA+TGG - chr4_1:51430499-51430518 Msa0554180:intron 40.0%
! AAACTGATTTCGTGCAAGCT+AGG + chr4_1:51430685-51430704 None:intergenic 40.0%
! TTACAAGAAGAACGGTGTCG+CGG - chr4_1:51424004-51424023 Msa0554180:three_prime_UTR 45.0%
ATTTGTCAACACTTCCTGCG+AGG - chr4_1:51424075-51424094 Msa0554180:three_prime_UTR 45.0%
!! AATAATGGGTTTGGTGGTGG+AGG - chr4_1:51424261-51424280 Msa0554180:intron 45.0%
!!! AAGGGTTGGTCTTTTGTTGC+TGG + chr4_1:51424344-51424363 None:intergenic 45.0%
TTGTAGTGTGCTCCTCCTTA+AGG - chr4_1:51424674-51424693 Msa0554180:intron 45.0%
TCAAACCCAAGACCTTAAGG+AGG + chr4_1:51424689-51424708 None:intergenic 45.0%
GATTCTCCCAGATGCGAATT+TGG - chr4_1:51424707-51424726 Msa0554180:intron 45.0%
TCCCAGATGCGAATTTGGAT+GGG - chr4_1:51424712-51424731 Msa0554180:intron 45.0%
! ATTGAAGGTGTAGGTGTGTC+TGG + chr4_1:51424821-51424840 None:intergenic 45.0%
!!! TGGCAATAGTTTTGAGCAGG+AGG - chr4_1:51425284-51425303 Msa0554180:intron 45.0%
!!! TAGTTTTGAGCAGGAGGTCT+AGG - chr4_1:51425290-51425309 Msa0554180:intron 45.0%
!!! AGTTTTGAGCAGGAGGTCTA+GGG - chr4_1:51425291-51425310 Msa0554180:CDS 45.0%
GTGTAGTTTCAACTGAGCAC+GGG - chr4_1:51425767-51425786 Msa0554180:intron 45.0%
TGTAGTTTCAACTGAGCACG+GGG - chr4_1:51425768-51425787 Msa0554180:intron 45.0%
ACACTCATCAGCATGCACTT+TGG + chr4_1:51425988-51426007 None:intergenic 45.0%
! AGTCCACTGCACAACTTTTG+AGG + chr4_1:51426565-51426584 None:intergenic 45.0%
TTACTTGTGAGTTCTGCCAC+TGG - chr4_1:51426869-51426888 Msa0554180:CDS 45.0%
GTGAATGCTGTATTGCCCAT+TGG - chr4_1:51426937-51426956 Msa0554180:CDS 45.0%
GTTGGTGCATGAATTCCTTG+AGG + chr4_1:51427000-51427019 None:intergenic 45.0%
! AACAATGTCACAAGGAGCAC+TGG + chr4_1:51427157-51427176 None:intergenic 45.0%
AGTGCTCCTTGTGACATTGT+TGG - chr4_1:51427156-51427175 Msa0554180:intron 45.0%
CTATGAAGAATTACGGGCAG+CGG - chr4_1:51427188-51427207 Msa0554180:intron 45.0%
CGGGGGATGGAAAAACAAAA+GGG + chr4_1:51427343-51427362 None:intergenic 45.0%
ACGGGGGATGGAAAAACAAA+AGG + chr4_1:51427344-51427363 None:intergenic 45.0%
!!! GACGTCAGAGGCATTTTGTA+GGG + chr4_1:51427601-51427620 None:intergenic 45.0%
!!! AGACGTCAGAGGCATTTTGT+AGG + chr4_1:51427602-51427621 None:intergenic 45.0%
!! GTTTTGAGTGGCTGGTTGAA+AGG + chr4_1:51427671-51427690 None:intergenic 45.0%
!!! GATTGGAAGTTTTGAGTGGC+TGG + chr4_1:51427679-51427698 None:intergenic 45.0%
!! TTGCATTGGCTCCATTGGAT+TGG + chr4_1:51427696-51427715 None:intergenic 45.0%
!!! GGACCATTATTTTGAGTGGC+TGG + chr4_1:51427730-51427749 None:intergenic 45.0%
! AGTCTCAAGCTTTAGCCAAC+TGG - chr4_1:51427756-51427775 Msa0554180:intron 45.0%
! GTCTCAAGCTTTAGCCAACT+GGG - chr4_1:51427757-51427776 Msa0554180:intron 45.0%
TGGTGTGATTGTCAAAAGGG+TGG - chr4_1:51428064-51428083 Msa0554180:intron 45.0%
GGTGTGATTGTCAAAAGGGT+GGG - chr4_1:51428065-51428084 Msa0554180:intron 45.0%
GTGTGATTGTCAAAAGGGTG+GGG - chr4_1:51428066-51428085 Msa0554180:intron 45.0%
TGACCTAGGTCATGAGAGTT+TGG - chr4_1:51428183-51428202 Msa0554180:intron 45.0%
ACACCAAACTCTCATGACCT+AGG + chr4_1:51428189-51428208 None:intergenic 45.0%
GATATAAGGTGGTTGAGGTG+TGG + chr4_1:51428382-51428401 None:intergenic 45.0%
TGCCACAGGAGCAAAACTTA+GGG + chr4_1:51428544-51428563 None:intergenic 45.0%
! TTTTGCTCCTGTGGCAGTTT+TGG - chr4_1:51428548-51428567 Msa0554180:intron 45.0%
! TGCGTTGACCGAGTCAAAAT+TGG - chr4_1:51428761-51428780 Msa0554180:intron 45.0%
! GACCGAGTCAAAATTGGCTT+AGG - chr4_1:51428767-51428786 Msa0554180:intron 45.0%
!!! CCCCTAAGCCAATTTTGACT+CGG + chr4_1:51428772-51428791 None:intergenic 45.0%
! CCGAGTCAAAATTGGCTTAG+GGG - chr4_1:51428769-51428788 Msa0554180:intron 45.0%
! CGAGTCAAAATTGGCTTAGG+GGG - chr4_1:51428770-51428789 Msa0554180:intron 45.0%
ATACATACCTCCACCTCCAA+TGG + chr4_1:51429026-51429045 None:intergenic 45.0%
GCCGAATAGATTTCCTGAGT+TGG + chr4_1:51429148-51429167 None:intergenic 45.0%
TCAGGAAATCTATTCGGCAG+TGG - chr4_1:51429150-51429169 Msa0554180:intron 45.0%
TGCTGCCTGAAACATTGTAG+TGG + chr4_1:51429286-51429305 None:intergenic 45.0%
CAACGGTGAAGTTTCCAAGT+AGG + chr4_1:51429866-51429885 None:intergenic 45.0%
GTTGCAGCACTAACTTTCTG+GGG - chr4_1:51429885-51429904 Msa0554180:intron 45.0%
GGACGCATTTCTGCAAGAAT+AGG + chr4_1:51429982-51430001 None:intergenic 45.0%
CACAGACACATTCTCCACTT+GGG + chr4_1:51430003-51430022 None:intergenic 45.0%
TCTTCTACTGGTCCTTGTTG+AGG - chr4_1:51430072-51430091 Msa0554180:intron 45.0%
TACTGGTCCTTGTTGAGGTT+GGG - chr4_1:51430077-51430096 Msa0554180:intron 45.0%
TGTATAGGCATGTGACACAG+CGG - chr4_1:51430438-51430457 Msa0554180:intron 45.0%
!!! TTTTTTTTTTTTTTAATTGT+TGG - chr4_1:51425488-51425507 Msa0554180:intron 5.0%
!! ATAATAAATATAATTAGATA+GGG + chr4_1:51426141-51426160 None:intergenic 5.0%
!! AATAATAAATATAATTAGAT+AGG + chr4_1:51426142-51426161 None:intergenic 5.0%
! TTGCTGGTTGTTAGAGGCAG+AGG + chr4_1:51424328-51424347 None:intergenic 50.0%
ATACATCGAGGCAACCCACT+TGG - chr4_1:51424623-51424642 Msa0554180:intron 50.0%
TACATCGAGGCAACCCACTT+GGG - chr4_1:51424624-51424643 Msa0554180:intron 50.0%
TGTGCTCCTCCTTAAGGTCT+TGG - chr4_1:51424680-51424699 Msa0554180:intron 50.0%
GTGCTCCTCCTTAAGGTCTT+GGG - chr4_1:51424681-51424700 Msa0554180:intron 50.0%
CTCCCAGATGCGAATTTGGA+TGG - chr4_1:51424711-51424730 Msa0554180:intron 50.0%
GCCCATCCAAATTCGCATCT+GGG + chr4_1:51424716-51424735 None:intergenic 50.0%
TCTTCATCCAAGCCCCAGAA+CGG - chr4_1:51425639-51425658 Msa0554180:intron 50.0%
ACAGTGTAGGTGTTTAGGCC+TGG + chr4_1:51425866-51425885 None:intergenic 50.0%
! AAGGGATTAGCAAGGGCTTG+AGG + chr4_1:51426674-51426693 None:intergenic 50.0%
GGGCAATACAGCATTCACTC+CGG + chr4_1:51426935-51426954 None:intergenic 50.0%
!! TTGTTTTTCCATCCCCCGTC+TGG - chr4_1:51427345-51427364 Msa0554180:intron 50.0%
! TTAAGGTATCCTCCAGACGG+GGG + chr4_1:51427360-51427379 None:intergenic 50.0%
! CTTAAGGTATCCTCCAGACG+GGG + chr4_1:51427361-51427380 None:intergenic 50.0%
! GCTTAAGGTATCCTCCAGAC+GGG + chr4_1:51427362-51427381 None:intergenic 50.0%
! GGCTTAAGGTATCCTCCAGA+CGG + chr4_1:51427363-51427382 None:intergenic 50.0%
ACGTTGAGAGAAGACGTCAG+AGG + chr4_1:51427613-51427632 None:intergenic 50.0%
!! GGCATTTGCATTGGCTCCAT+TGG + chr4_1:51427701-51427720 None:intergenic 50.0%
!! CACTGAACCCTGGCTTTGAA+AGG - chr4_1:51427785-51427804 Msa0554180:intron 50.0%
TGGTTGCATCACACCTCTAC+AGG - chr4_1:51427991-51428010 Msa0554180:intron 50.0%
GGTTGCATCACACCTCTACA+GGG - chr4_1:51427992-51428011 Msa0554180:intron 50.0%
TGGAGGGATAAGGAGGTTGT+GGG + chr4_1:51428350-51428369 None:intergenic 50.0%
GTATGAGTGGAGGGATAAGG+AGG + chr4_1:51428357-51428376 None:intergenic 50.0%
GGAGTATGAGTGGAGGGATA+AGG + chr4_1:51428360-51428379 None:intergenic 50.0%
! TTGAGGTGTGGGAGTATGAG+TGG + chr4_1:51428370-51428389 None:intergenic 50.0%
GGGGAGATATAAGGTGGTTG+AGG + chr4_1:51428387-51428406 None:intergenic 50.0%
CAACCACCTTATATCTCCCC+AGG - chr4_1:51428387-51428406 Msa0554180:intron 50.0%
AGACCTGGGGAGATATAAGG+TGG + chr4_1:51428393-51428412 None:intergenic 50.0%
TCGAGACCTGGGGAGATATA+AGG + chr4_1:51428396-51428415 None:intergenic 50.0%
CCACAGGAGCAAAACTTAGG+GGG + chr4_1:51428542-51428561 None:intergenic 50.0%
GCCACAGGAGCAAAACTTAG+GGG + chr4_1:51428543-51428562 None:intergenic 50.0%
CTGCCACAGGAGCAAAACTT+AGG + chr4_1:51428545-51428564 None:intergenic 50.0%
TGACCGAGTCAATTGCCCTA+GGG + chr4_1:51428576-51428595 None:intergenic 50.0%
TTGACCGAGTCAATTGCCCT+AGG + chr4_1:51428577-51428596 None:intergenic 50.0%
! TTTTGCCCCTGTGGCAGTTT+TGG + chr4_1:51428796-51428815 None:intergenic 50.0%
TGCCACAGGGGCAAAACTTA+GGG - chr4_1:51428800-51428819 Msa0554180:intron 50.0%
CTATTCGGCAGTGGAATCTC+AGG - chr4_1:51429159-51429178 Msa0554180:intron 50.0%
TGGAACTGGGAAGTAGAACC+TGG + chr4_1:51429231-51429250 None:intergenic 50.0%
AACGGGTGGTTGTTGGAACT+GGG + chr4_1:51429244-51429263 None:intergenic 50.0%
AGTTCCAACAACCACCCGTT+GGG - chr4_1:51429244-51429263 Msa0554180:intron 50.0%
! GTGTTATTGAACCCAACGGG+TGG + chr4_1:51429258-51429277 None:intergenic 50.0%
! ATGCTCAAGGTCAATGGGCT+GGG + chr4_1:51429483-51429502 None:intergenic 50.0%
AATGCTCAAGGTCAATGGGC+TGG + chr4_1:51429484-51429503 None:intergenic 50.0%
TTGGTAGAGATGCTGGAAGC+AGG - chr4_1:51429773-51429792 Msa0554180:intron 50.0%
TTGCAGAAATGCGTCCCAAG+TGG - chr4_1:51429986-51430005 Msa0554180:intron 50.0%
CCACAGACACATTCTCCACT+TGG + chr4_1:51430004-51430023 None:intergenic 50.0%
CCAAGTGGAGAATGTGTCTG+TGG - chr4_1:51430001-51430020 Msa0554180:intron 50.0%
GGAGAAATGGAATCCTGGAG+AGG - chr4_1:51430043-51430062 Msa0554180:intron 50.0%
CTACTGGTCCTTGTTGAGGT+TGG - chr4_1:51430076-51430095 Msa0554180:intron 50.0%
! CTATCTGGAGGAGCTTGTTC+TGG + chr4_1:51430398-51430417 None:intergenic 50.0%
TGGATGGGCAACGAGAAATG+AGG - chr4_1:51430515-51430534 Msa0554180:CDS 50.0%
ATGGGCAACGAGAAATGAGG+AGG - chr4_1:51430518-51430537 Msa0554180:CDS 50.0%
!! AATGGGTTTGGTGGTGGAGG+AGG - chr4_1:51424264-51424283 Msa0554180:intron 55.0%
ACCACGAAGCCAACCCAAGT+GGG + chr4_1:51424640-51424659 None:intergenic 55.0%
!! TTGGGTTGGCTTCGTGGTGT+TGG - chr4_1:51424642-51424661 Msa0554180:intron 55.0%
GGCCCATCCAAATTCGCATC+TGG + chr4_1:51424717-51424736 None:intergenic 55.0%
TCAACTGAGCACGGGGAACA+TGG - chr4_1:51425775-51425794 Msa0554180:intron 55.0%
GGGAGGGGAAACACAAGAGA+TGG + chr4_1:51426121-51426140 None:intergenic 55.0%
ATCTGGTGCTTGCAAGCCTC+AGG + chr4_1:51426344-51426363 None:intergenic 55.0%
! ACTGTGAACTGACTGGCCAG+TGG + chr4_1:51426888-51426907 None:intergenic 55.0%
ATTACGGGCAGCGGCTTATG+AGG - chr4_1:51427197-51427216 Msa0554180:intron 55.0%
! TTTTTCCATCCCCCGTCTGG+AGG - chr4_1:51427348-51427367 Msa0554180:intron 55.0%
! GGTTCAGTGAAGCACCCAGT+TGG + chr4_1:51427774-51427793 None:intergenic 55.0%
GTGGAGGGATAAGGAGGTTG+TGG + chr4_1:51428351-51428370 None:intergenic 55.0%
! GGTGTGGGAGTATGAGTGGA+GGG + chr4_1:51428366-51428385 None:intergenic 55.0%
! AGGTGTGGGAGTATGAGTGG+AGG + chr4_1:51428367-51428386 None:intergenic 55.0%
GGAAGCAAGTTCGAGACCTG+GGG + chr4_1:51428406-51428425 None:intergenic 55.0%
GGGAAGCAAGTTCGAGACCT+GGG + chr4_1:51428407-51428426 None:intergenic 55.0%
TGGGAAGCAAGTTCGAGACC+TGG + chr4_1:51428408-51428427 None:intergenic 55.0%
CAGGAGCAAAACTTAGGGGG+CGG + chr4_1:51428539-51428558 None:intergenic 55.0%
! CCCCCTAAGTTTTGCTCCTG+TGG - chr4_1:51428539-51428558 Msa0554180:intron 55.0%
ACCGAGTCAATTGCCCTAGG+GGG + chr4_1:51428574-51428593 None:intergenic 55.0%
GACCGAGTCAATTGCCCTAG+GGG + chr4_1:51428575-51428594 None:intergenic 55.0%
CTGCCACAGGGGCAAAACTT+AGG - chr4_1:51428799-51428818 Msa0554180:intron 55.0%
GCCACAGGGGCAAAACTTAG+GGG - chr4_1:51428801-51428820 Msa0554180:intron 55.0%
CCACAGGGGCAAAACTTAGG+GGG - chr4_1:51428802-51428821 Msa0554180:intron 55.0%
CCAATGGAACTAGGCTGCAC+TGG + chr4_1:51429010-51429029 None:intergenic 55.0%
CCAGTGCAGCCTAGTTCCAT+TGG - chr4_1:51429007-51429026 Msa0554180:CDS 55.0%
GTGCAGCCTAGTTCCATTGG+AGG - chr4_1:51429010-51429029 Msa0554180:intron 55.0%
CAGCCTAGTTCCATTGGAGG+TGG - chr4_1:51429013-51429032 Msa0554180:intron 55.0%
CCTCCACCTCCAATGGAACT+AGG + chr4_1:51429019-51429038 None:intergenic 55.0%
CCTAGTTCCATTGGAGGTGG+AGG - chr4_1:51429016-51429035 Msa0554180:intron 55.0%
TTCGGCAGTGGAATCTCAGG+TGG - chr4_1:51429162-51429181 Msa0554180:intron 55.0%
CAACCCCTTTCCTACACCAG+CGG - chr4_1:51429191-51429210 Msa0554180:intron 55.0%
AACCCCTTTCCTACACCAGC+GGG - chr4_1:51429192-51429211 Msa0554180:intron 55.0%
AACCCCGCTGGTGTAGGAAA+GGG + chr4_1:51429198-51429217 None:intergenic 55.0%
CAACGGGTGGTTGTTGGAAC+TGG + chr4_1:51429245-51429264 None:intergenic 55.0%
CAGTTCCAACAACCACCCGT+TGG - chr4_1:51429243-51429262 Msa0554180:intron 55.0%
TGAACCCAACGGGTGGTTGT+TGG + chr4_1:51429251-51429270 None:intergenic 55.0%
TAGAGATGCTGGAAGCAGGC+AGG - chr4_1:51429777-51429796 Msa0554180:intron 55.0%
GTCAACACTTCCTGCGAGGC+AGG - chr4_1:51424079-51424098 Msa0554180:three_prime_UTR 60.0%
AGAGGAATGACCTGCCTCGC+AGG + chr4_1:51424092-51424111 None:intergenic 60.0%
TCGAGGCAACCCACTTGGGT+TGG - chr4_1:51424628-51424647 Msa0554180:intron 60.0%
!! ACCCACTTGGGTTGGCTTCG+TGG - chr4_1:51424636-51424655 Msa0554180:intron 60.0%
CACCACGAAGCCAACCCAAG+TGG + chr4_1:51424641-51424660 None:intergenic 60.0%
!! TGACGTGGAGTGCCGTTCTG+GGG + chr4_1:51425654-51425673 None:intergenic 60.0%
!! CTGACGTGGAGTGCCGTTCT+GGG + chr4_1:51425655-51425674 None:intergenic 60.0%
!! ACTGACGTGGAGTGCCGTTC+TGG + chr4_1:51425656-51425675 None:intergenic 60.0%
CTGGGTGCTTCACTGAACCC+TGG - chr4_1:51427775-51427794 Msa0554180:intron 60.0%
TAGGGGGCCAAAACTGCCAC+AGG + chr4_1:51428786-51428805 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCT+AGG - chr4_1:51428557-51428576 Msa0554180:intron 60.0%
!! GTGGCAGTTTTGGCCCCCTA+GGG - chr4_1:51428558-51428577 Msa0554180:intron 60.0%
GCCCCCTAGGGCAATTGACT+CGG - chr4_1:51428570-51428589 Msa0554180:intron 60.0%
!! TGACTCGGTCAACGCACACG+TGG + chr4_1:51428585-51428604 None:intergenic 60.0%
TAGGGGGCCAAAACTGCCAC+AGG - chr4_1:51428786-51428805 Msa0554180:intron 60.0%
AGGGGGCCAAAACTGCCACA+GGG - chr4_1:51428787-51428806 Msa0554180:intron 60.0%
! CCCCCTAAGTTTTGCCCCTG+TGG + chr4_1:51428805-51428824 None:intergenic 60.0%
CAGGGGCAAAACTTAGGGGG+CGG - chr4_1:51428805-51428824 Msa0554180:intron 60.0%
ACCCCTTTCCTACACCAGCG+GGG - chr4_1:51429193-51429212 Msa0554180:intron 60.0%
ACCCCGCTGGTGTAGGAAAG+GGG + chr4_1:51429197-51429216 None:intergenic 60.0%
CAACCCCGCTGGTGTAGGAA+AGG + chr4_1:51429199-51429218 None:intergenic 60.0%
CTACACCAGCGGGGTTGACA+GGG - chr4_1:51429202-51429221 Msa0554180:intron 60.0%
!! GGGTTTGGTGGTGGAGGAGG+AGG - chr4_1:51424267-51424286 Msa0554180:intron 65.0%
!! TGGAGTGCCGTTCTGGGGCT+TGG + chr4_1:51425649-51425668 None:intergenic 65.0%
GGTATCCTCCAGACGGGGGA+TGG + chr4_1:51427356-51427375 None:intergenic 65.0%
GGGGGCCAAAACTGCCACAG+GGG - chr4_1:51428788-51428807 Msa0554180:intron 65.0%
CCTGTCAACCCCGCTGGTGT+AGG + chr4_1:51429204-51429223 None:intergenic 65.0%
CCTACACCAGCGGGGTTGAC+AGG - chr4_1:51429201-51429220 Msa0554180:intron 65.0%
GGAAACCCTGTCAACCCCGC+TGG + chr4_1:51429210-51429229 None:intergenic 65.0%
GCGGGGTTGACAGGGTTTCC+AGG - chr4_1:51429210-51429229 Msa0554180:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51423830 51430780 51423830 ID=Msa0554180;Name=Msa0554180
chr4_1 mRNA 51423830 51430780 51423830 ID=Msa0554180-mRNA-1;Parent=Msa0554180;Name=Msa0554180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=236|0.87|0.77|1|0.87|0.77|9|350|325
chr4_1 exon 51423830 51424218 51423830 ID=Msa0554180-mRNA-1:exon:14718;Parent=Msa0554180-mRNA-1
chr4_1 exon 51424546 51424618 51424546 ID=Msa0554180-mRNA-1:exon:14717;Parent=Msa0554180-mRNA-1
chr4_1 exon 51425291 51425480 51425291 ID=Msa0554180-mRNA-1:exon:14716;Parent=Msa0554180-mRNA-1
chr4_1 exon 51425573 51425628 51425573 ID=Msa0554180-mRNA-1:exon:14715;Parent=Msa0554180-mRNA-1
chr4_1 exon 51426804 51427075 51426804 ID=Msa0554180-mRNA-1:exon:14714;Parent=Msa0554180-mRNA-1
chr4_1 exon 51427359 51427452 51427359 ID=Msa0554180-mRNA-1:exon:14713;Parent=Msa0554180-mRNA-1
chr4_1 exon 51428184 51428279 51428184 ID=Msa0554180-mRNA-1:exon:14712;Parent=Msa0554180-mRNA-1
chr4_1 exon 51428904 51429026 51428904 ID=Msa0554180-mRNA-1:exon:14711;Parent=Msa0554180-mRNA-1
chr4_1 exon 51430510 51430780 51430510 ID=Msa0554180-mRNA-1:exon:14710;Parent=Msa0554180-mRNA-1
chr4_1 five_prime_UTR 51430545 51430780 51430545 ID=Msa0554180-mRNA-1:five_prime_utr;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51430510 51430544 51430510 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51428904 51429026 51428904 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51428184 51428279 51428184 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51427359 51427452 51427359 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51426804 51427075 51426804 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51425573 51425628 51425573 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51425291 51425480 51425291 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51424546 51424618 51424546 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 CDS 51424180 51424218 51424180 ID=Msa0554180-mRNA-1:cds;Parent=Msa0554180-mRNA-1
chr4_1 three_prime_UTR 51423830 51424179 51423830 ID=Msa0554180-mRNA-1:three_prime_utr;Parent=Msa0554180-mRNA-1
Gene Sequence

>Msa0554180

ATGAGAGAGATTTGTCAACACTTCCTGCGAGGCAGTATTGATGGTTTACTTCTGATGAATCAGCCCCTTGAAAACAACAAATGGAGTCGGTCTTCATCCAAGCCCCAGAACGGCACTCCACGTCAGTCTGATAACAAATCTCAAACAGTGAATCATAAATGTACAGATCCTGAGGCTTGCAAGCACCAGATTGTAGAAGATTTTCAGCAAGAGAAACCACTTTGGATTCTTACATGCTATGGTCACTGTAAAGGTGCTCCTTGTGACATTGTTGGAGATATTAGCTATGAAGAATTACGGGCAGCGGCTTATGAGGATAATAAGAAAGGAATGAGTTTGCCACAAATTGTTGAGAAAGAGAAAAACATATTACAATCCAAGTTGGTTGAGTTTAACAAACTACTTTCTGAACCCTACAAAATGCCTCTGACGTCTTCTCTCAACGTTCAAAACTTCCAATCCAATGGAACCAATGTAAATGCCTTTCAACCAGCCACTCAAAACTTCCAATCCAATGGAGCCAATGCAAATGCCTTTCAACCAGCCACTCAAAATAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCACTGAACCCTGGCTTTGAAAGGCCCTCTGCACCATTAATGAGTACTCCAGTGCAGCCTAGTTCCATTGGAGGTGGAGGAAACTTTTTCACACCCAACTCAGGAAATCTATTCGGCAGTGGAATCTCAGGTGGTCAAATCAACCCCTTTCCTACACCAGCGGGGTTGACAGGGTTTCCAGGTTCTACTTCCCAGTTCCAACAACCACCCGTTGGGTTCAATAACACTAGCTCCACTACAATGTTTCAGGCAGCACCAGATGTTCAGTTAAATGCGTCCCAAGTGGAGAATGTGTCTGTGGATGATAGTATCTGGTTAAAGGAGAAATGGAATCCTGGAGAGATTCCAGAACAAGCTCCTCCAGATAGATTTGTTTGGTAG

Protein sequence

>Msa0554180

MREICQHFLRGSIDGLLLMNQPLENNKWSRSSSKPQNGTPRQSDNKSQTVNHKCTDPEACKHQIVEDFQQEKPLWILTCYGHCKGAPCDIVGDISYEELRAAAYEDNKKGMSLPQIVEKEKNILQSKLVEFNKLLSEPYKMPLTSSLNVQNFQSNGTNVNAFQPATQNFQSNGANANAFQPATQNNGPLSVSSFSQLGASLNPGFERPSAPLMSTPVQPSSIGGGGNFFTPNSGNLFGSGISGGQINPFPTPAGLTGFPGSTSQFQQPPVGFNNTSSTTMFQAAPDVQLNASQVENVSVDDSIWLKEKWNPGEIPEQAPPDRFVW*