AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855160 MtrunA17_Chr5g0432831 100.000 148 0 0 1 148 1 148 5.28e-110 308
Msa0855160 MtrunA17_Chr3g0108261 98.649 148 2 0 1 148 1 148 1.15e-108 305
Msa0855160 MtrunA17_Chr7g0275361 96.622 148 5 0 1 148 1 148 9.63e-107 300
Msa0855160 MtrunA17_Chr1g0154011 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0855160 MtrunA17_Chr8g0369311 92.568 148 11 0 1 148 57 204 2.20e-102 291
Msa0855160 MtrunA17_Chr4g0037011 91.216 148 13 0 1 148 1 148 2.21e-102 289
Msa0855160 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 1.31e-55 172
Msa0855160 MtrunA17_Chr2g0316201 49.655 145 73 0 4 148 8 152 2.64e-48 152
Msa0855160 MtrunA17_Chr2g0316211 49.306 144 73 0 5 148 9 152 2.83e-47 150
Msa0855160 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 2.60e-45 145
Msa0855160 MtrunA17_Chr8g0362321 45.205 146 75 1 2 142 5 150 4.03e-45 144
Msa0855160 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 3.06e-42 139
Msa0855160 MtrunA17_Chr3g0139901 40.136 147 84 3 5 147 7 153 2.93e-34 117
Msa0855160 MtrunA17_Chr4g0038891 44.355 124 69 0 4 127 35 158 6.72e-34 117
Msa0855160 MtrunA17_Chr1g0199951 45.669 127 68 1 3 128 43 169 5.05e-33 115
Msa0855160 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 3.83e-32 112
Msa0855160 MtrunA17_Chr4g0053191 36.184 152 90 2 1 145 4 155 8.45e-30 105
Msa0855160 MtrunA17_Chr4g0031181 35.821 134 72 2 15 134 18 151 2.83e-27 99.8
Msa0855160 MtrunA17_Chr5g0401831 33.553 152 94 2 1 145 4 155 3.59e-27 99.4
Msa0855160 MtrunA17_Chr8g0348701 37.398 123 75 2 26 146 25 147 6.75e-27 99.4
Msa0855160 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 2.01e-26 98.2
Msa0855160 MtrunA17_Chr8g0387131 35.766 137 86 2 12 146 11 147 9.45e-26 96.3
Msa0855160 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 2.55e-25 97.4
Msa0855160 MtrunA17_Chr2g0328001 34.028 144 81 2 15 144 18 161 8.90e-25 93.6
Msa0855160 MtrunA17_Chr4g0059291 30.894 123 83 2 26 146 25 147 2.43e-22 87.8
Msa0855160 MtrunA17_Chr8g0372391 37.864 103 62 2 1 102 15 116 1.57e-18 77.0
Msa0855160 MtrunA17_Chr4g0068301 34.454 119 68 4 2 114 11 125 2.07e-18 79.7
Msa0855160 MtrunA17_Chr8g0376111 31.373 153 87 5 4 144 43 189 4.02e-18 79.0
Msa0855160 MtrunA17_Chr5g0404931 36.893 103 63 2 1 102 15 116 5.96e-18 75.5
Msa0855160 MtrunA17_Chr7g0233631 36.885 122 67 3 4 115 38 159 3.05e-17 76.6
Msa0855160 MtrunA17_Chr7g0233611 36.885 122 67 3 4 115 38 159 7.11e-17 75.5
Msa0855160 MtrunA17_Chr8g0345331 32.479 117 70 3 4 115 8 120 5.55e-16 72.0
Msa0855160 MtrunA17_Chr4g0047301 31.333 150 90 4 4 143 672 818 3.33e-15 71.6
Msa0855160 MtrunA17_Chr7g0222941 30.894 123 75 3 3 115 90 212 8.02e-15 68.9
Msa0855160 MtrunA17_Chr2g0282211 28.947 152 95 4 3 144 681 829 2.90e-14 68.9
Msa0855160 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.84e-14 67.8
Msa0855160 MtrunA17_Chr1g0186291 30.303 99 55 2 43 140 30 115 2.04e-13 63.2
Msa0855160 MtrunA17_Chr2g0317631 30.081 123 76 3 3 115 306 428 1.35e-12 63.9
Msa0855160 MtrunA17_Chr8g0376201 30.496 141 87 4 3 133 192 331 2.24e-12 63.2
Msa0855160 MtrunA17_Chr1g0198021 28.455 123 78 3 3 115 137 259 3.41e-12 62.8
Msa0855160 MtrunA17_Chr1g0211131 29.508 122 76 3 4 115 823 944 5.26e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855160 AT5G41700.5 97.297 148 4 0 1 148 1 148 5.33e-108 304
Msa0855160 AT5G41700.2 97.297 148 4 0 1 148 1 148 5.33e-108 304
Msa0855160 AT5G41700.1 97.297 148 4 0 1 148 1 148 5.33e-108 304
Msa0855160 AT1G64230.2 96.622 148 5 0 1 148 1 148 6.02e-108 303
Msa0855160 AT1G64230.1 96.622 148 5 0 1 148 1 148 6.02e-108 303
Msa0855160 AT4G27960.1 95.270 148 7 0 1 148 1 148 2.68e-106 299
Msa0855160 AT5G53300.2 95.270 148 7 0 1 148 1 148 5.98e-106 298
Msa0855160 AT5G53300.4 95.270 148 7 0 1 148 1 148 5.98e-106 298
Msa0855160 AT5G53300.1 95.270 148 7 0 1 148 1 148 5.98e-106 298
Msa0855160 AT4G27960.2 95.270 148 7 0 1 148 31 178 8.91e-106 299
Msa0855160 AT5G41700.4 95.973 149 5 1 1 148 1 149 3.47e-105 296
Msa0855160 AT3G08690.2 93.243 148 10 0 1 148 1 148 2.82e-104 294
Msa0855160 AT3G08690.1 93.243 148 10 0 1 148 1 148 2.82e-104 294
Msa0855160 AT1G64230.3 90.446 157 6 1 1 148 1 157 2.29e-103 292
Msa0855160 AT5G56150.1 88.514 148 17 0 1 148 1 148 5.54e-100 283
Msa0855160 AT1G64230.5 74.737 190 6 1 1 148 1 190 6.21e-99 282
Msa0855160 AT1G64230.4 74.737 190 6 1 1 148 1 190 6.21e-99 282
Msa0855160 AT2G16740.1 87.075 147 19 0 1 147 1 147 3.55e-98 279
Msa0855160 AT3G08700.2 79.195 149 30 1 1 148 1 149 3.19e-87 251
Msa0855160 AT3G08700.1 79.195 149 30 1 1 148 1 149 3.19e-87 251
Msa0855160 AT5G41700.3 96.154 104 4 0 1 104 1 104 1.21e-72 214
Msa0855160 AT5G53300.3 92.661 109 6 1 1 107 1 109 4.14e-71 209
Msa0855160 AT5G56150.2 86.408 103 14 0 1 103 1 103 1.58e-65 195
Msa0855160 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.36e-53 167
Msa0855160 AT1G16890.2 50.345 145 72 0 4 148 8 152 7.49e-49 154
Msa0855160 AT1G78870.2 49.655 145 73 0 4 148 8 152 6.88e-48 152
Msa0855160 AT1G16890.3 48.052 154 71 1 4 148 8 161 3.51e-46 148
Msa0855160 AT5G62540.1 49.254 134 68 0 2 135 5 138 6.65e-46 147
Msa0855160 AT1G14400.1 46.575 146 73 1 2 142 5 150 1.42e-45 146
Msa0855160 AT1G14400.2 46.575 146 73 1 2 142 5 150 1.42e-45 146
Msa0855160 AT2G02760.1 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0855160 AT2G02760.2 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0855160 AT2G02760.4 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0855160 AT2G02760.3 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0855160 AT1G36340.2 48.966 145 73 1 2 146 9 152 3.95e-45 145
Msa0855160 AT1G36340.1 48.966 145 73 1 2 146 9 152 3.95e-45 145
Msa0855160 AT3G13550.2 50.000 114 57 0 2 115 37 150 3.12e-42 138
Msa0855160 AT1G16890.1 52.941 119 56 0 30 148 1 119 1.04e-41 135
Msa0855160 AT1G78870.4 52.941 119 56 0 30 148 1 119 1.82e-41 134
Msa0855160 AT1G78870.1 52.500 120 56 1 30 148 1 120 1.08e-39 130
Msa0855160 AT5G50870.1 45.833 144 76 2 5 146 6 149 1.99e-39 132
Msa0855160 AT2G32790.1 49.342 152 68 4 2 148 30 177 2.39e-36 123
Msa0855160 AT5G50870.2 42.581 155 76 3 5 146 6 160 5.10e-36 123
Msa0855160 AT3G24515.1 43.949 157 75 3 3 146 8 164 1.03e-34 125
Msa0855160 AT5G25760.1 38.776 147 86 3 5 147 7 153 1.24e-32 113
Msa0855160 AT5G25760.2 38.776 147 86 3 5 147 7 153 1.24e-32 113
Msa0855160 AT1G78870.3 48.571 105 54 0 4 108 8 112 2.19e-32 111
Msa0855160 AT3G24515.3 45.902 122 62 1 29 146 68 189 4.44e-32 118
Msa0855160 AT3G20060.1 42.742 124 71 0 4 127 39 162 8.43e-31 109
Msa0855160 AT1G50490.1 43.548 124 70 0 4 127 38 161 2.37e-30 108
Msa0855160 AT3G20060.2 43.636 110 62 0 22 131 12 121 3.08e-29 104
Msa0855160 AT2G46030.5 37.162 148 90 3 1 146 1 147 5.94e-29 105
Msa0855160 AT2G46030.1 37.162 148 90 3 1 146 1 147 5.94e-29 105
Msa0855160 AT2G46030.3 37.162 148 90 3 1 146 73 219 1.49e-28 105
Msa0855160 AT2G46030.4 39.837 123 72 2 26 146 28 150 2.22e-28 103
Msa0855160 AT2G46030.2 39.837 123 72 2 26 146 28 150 2.22e-28 103
Msa0855160 AT3G57870.1 34.868 152 92 2 1 145 5 156 4.76e-28 102
Msa0855160 AT5G05080.2 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0855160 AT5G05080.3 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0855160 AT5G05080.1 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0855160 AT5G05080.4 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0855160 AT3G55380.1 37.313 134 70 2 15 134 19 152 1.98e-27 100
Msa0855160 AT5G41340.1 38.211 123 74 2 26 146 25 147 8.98e-27 99.4
Msa0855160 AT1G63800.2 38.211 123 74 2 26 146 10 132 1.11e-26 98.6
Msa0855160 AT1G63800.1 38.211 123 74 2 26 146 25 147 1.22e-26 99.0
Msa0855160 AT5G59300.1 34.722 144 80 2 15 144 18 161 3.02e-25 95.1
Msa0855160 AT4G36800.2 35.036 137 84 3 5 139 34 167 4.38e-25 95.1
Msa0855160 AT4G36800.1 35.036 137 84 3 5 139 34 167 4.38e-25 95.1
Msa0855160 AT3G46460.1 34.028 144 81 2 15 144 18 161 5.36e-25 94.4
Msa0855160 AT5G41340.2 40.385 104 60 2 45 146 9 112 1.24e-23 90.5
Msa0855160 AT2G18600.1 35.036 137 84 3 5 139 35 168 2.46e-23 90.5
Msa0855160 AT2G18600.2 35.036 137 84 3 5 139 35 168 2.46e-23 90.5
Msa0855160 AT3G17000.1 36.975 119 65 4 2 114 12 126 2.10e-20 85.5
Msa0855160 AT3G55380.2 29.586 169 71 3 15 135 19 187 3.27e-20 82.8
Msa0855160 AT1G75440.1 37.963 108 61 3 1 107 15 117 3.94e-18 76.6
Msa0855160 AT1G45050.1 36.893 103 63 2 1 102 15 116 1.22e-17 75.1
Msa0855160 AT5G42990.1 37.864 103 62 2 1 102 15 116 1.97e-17 74.7
Msa0855160 AT3G46460.3 30.631 111 64 1 47 144 9 119 1.49e-16 71.2
Msa0855160 AT3G46460.2 30.631 111 64 1 47 144 9 119 1.49e-16 71.2
Msa0855160 AT1G17280.9 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.7 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.6 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.2 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.5 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.3 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.1 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT1G17280.8 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0855160 AT4G36410.1 34.259 108 65 3 1 107 15 117 1.72e-16 72.0
Msa0855160 AT5G50430.1 33.333 117 69 3 4 115 8 120 1.95e-16 73.6
Msa0855160 AT5G50430.2 33.333 117 69 3 4 115 8 120 1.95e-16 73.6
Msa0855160 AT1G17280.4 30.894 123 70 3 4 115 8 126 3.99e-15 70.1
Msa0855160 AT3G15355.1 28.947 152 95 4 3 144 334 482 3.26e-12 63.2
Msa0855160 AT1G53025.2 30.328 122 75 3 4 115 274 395 2.83e-11 60.5
Msa0855160 AT1G53025.1 30.328 122 75 3 4 115 274 395 3.16e-11 60.5
Msa0855160 AT1G45050.2 33.708 89 57 2 1 88 15 102 5.36e-11 56.6
Msa0855160 AT1G53023.1 31.148 122 74 3 4 115 60 181 7.11e-11 59.3

Find 94 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGAAATGGCTTATTATT+TGG 0.110923 5_4:-48286409 Msa0855160:three_prime_UTR
CAATATTCACAATTGATAAA+TGG 0.173693 5_4:+48286506 None:intergenic
TATTATTTGGATTGTGTTGT+AGG 0.216327 5_4:-48286396 Msa0855160:three_prime_UTR
TTGTACATGTGTGCAATTTC+AGG 0.243362 5_4:+48286723 None:intergenic
CTATCAAGCTATCTCGATTA+TGG 0.274247 5_4:+48286208 None:intergenic
TATTTAAGTTTGAGTGATTA+TGG 0.283035 5_4:-48291482 Msa0855160:intron
ATATACTGGTGGTGTGTTCC+TGG 0.285935 5_4:-48289653 Msa0855160:CDS
CTGCCATTACTGTTGATGTT+TGG 0.288456 5_4:+48287094 None:intergenic
AGGAACACACCACCAGTATA+TGG 0.290101 5_4:+48289655 None:intergenic
TGCCATTACTGTTGATGTTT+GGG 0.308240 5_4:+48287095 None:intergenic
ATGCCATCTTTATTGTTTAG+TGG 0.346543 5_4:-48286554 Msa0855160:three_prime_UTR
ACAAGTGGATCATCGGGGTT+GGG 0.347133 5_4:+48286747 None:intergenic
GTCAATTTGCTCGTTGTTGA+CGG 0.355439 5_4:-48286772 Msa0855160:CDS
AACCTGCACTGCATGAAGTT+GGG 0.370343 5_4:+48291413 None:intergenic
TGGAAGAAGAATGAATGATT+TGG 0.378241 5_4:+48291655 None:intergenic
ATTCTTGAAAATCAAAGAAA+TGG 0.380237 5_4:+48291769 None:intergenic
GCGAGCTGTGGCTTCATACT+TGG 0.382810 5_4:+48286689 None:intergenic
AATCTTTGTGCTTGTTGACC+TGG 0.402263 5_4:-48286441 Msa0855160:three_prime_UTR
AATATTCACAATTGATAAAT+GGG 0.410961 5_4:+48286507 None:intergenic
TTGGATTGTGTTGTAGGTCT+TGG 0.411170 5_4:-48286390 Msa0855160:three_prime_UTR
GGATGTGGATTAAGATCAAA+TGG 0.422664 5_4:+48286229 None:intergenic
TCAGGAACAAGTGGATCATC+GGG 0.432078 5_4:+48286741 None:intergenic
GAATACCTTTGGTGGCTTGA+AGG 0.432336 5_4:+48289603 None:intergenic
GTAATATCAAACCTTGGAAA+TGG 0.433618 5_4:+48287027 None:intergenic
ACCTTGGAAATGGTTAAAGC+TGG 0.447093 5_4:+48287037 None:intergenic
ATGAAGCCACAGCTCGCAGC+TGG 0.457816 5_4:-48286683 Msa0855160:CDS
TTGACCTGGTATTCCTAGCT+AGG 0.463411 5_4:-48286427 Msa0855160:three_prime_UTR
TGGTATTCCTAGCTAGGAAA+TGG 0.465221 5_4:-48286421 Msa0855160:three_prime_UTR
AGTGGAACTTGAAGCTGGTA+AGG 0.470147 5_4:-48286536 Msa0855160:three_prime_UTR
TTCATCAACCGTACAAAATG+TGG 0.470431 5_4:-48286175 Msa0855160:three_prime_UTR
TTCTTCCACGCTTCCGACCC+AGG 0.471097 5_4:-48291640 Msa0855160:intron
TAATAAGCCATTTCCTAGCT+AGG 0.471718 5_4:+48286414 None:intergenic
CCGGCTGATAGCCCATATAC+TGG 0.473020 5_4:-48289667 Msa0855160:CDS
AATACCTTTGGTGGCTTGAA+GGG 0.473573 5_4:+48289604 None:intergenic
GGTGGCTTGAAGGGATAGTC+AGG 0.473711 5_4:+48289613 None:intergenic
AACAAGTGGATCATCGGGGT+TGG 0.475495 5_4:+48286746 None:intergenic
TTCAGGAACAAGTGGATCAT+CGG 0.479213 5_4:+48286740 None:intergenic
AGCTATCTCGATTATGGATG+TGG 0.483711 5_4:+48286214 None:intergenic
AAACCTGCACTGCATGAAGT+TGG 0.486829 5_4:+48291412 None:intergenic
CACTGGCAAGCCACAATCAT+GGG 0.492054 5_4:-48289691 Msa0855160:CDS
AGAATGAATGATTTGGAGAA+GGG 0.495620 5_4:+48291662 None:intergenic
CAAGTGGATCATCGGGGTTG+GGG 0.503531 5_4:+48286748 None:intergenic
GATTTGGAGAAGGGTGAAGG+AGG 0.506835 5_4:+48291671 None:intergenic
GGCTTCATACTTGGCCCTGT+CGG 0.512375 5_4:+48286698 None:intergenic
TGTTTAGTGGAACTTGAAGC+TGG 0.513586 5_4:-48286541 Msa0855160:three_prime_UTR
GGAACACACCACCAGTATAT+GGG 0.514259 5_4:+48289656 None:intergenic
TATATCAGGTCCTGTGGCTG+AGG 0.520756 5_4:-48289722 Msa0855160:intron
ACCTGCACTGCATGAAGTTG+GGG 0.521550 5_4:+48291414 None:intergenic
GGCGTCGAAACGAATCTTGA+AGG 0.526427 5_4:-48291461 Msa0855160:CDS
CCACTGGCAAGCCACAATCA+TGG 0.528486 5_4:-48289692 Msa0855160:CDS
AAGAATGAATGATTTGGAGA+AGG 0.530077 5_4:+48291661 None:intergenic
GTTCCACTAAACAATAAAGA+TGG 0.532133 5_4:+48286551 None:intergenic
ACAACGAGCAAATTGACAAA+AGG 0.532368 5_4:+48286778 None:intergenic
CCCAGCTTTAACCATTTCCA+AGG 0.532924 5_4:-48287038 Msa0855160:intron
GCAAGCCACAATCATGGGAC+CGG 0.541067 5_4:-48289686 Msa0855160:CDS
CACACATGTACAAGACCGAC+AGG 0.541851 5_4:-48286713 Msa0855160:CDS
TGGCTGAGGACATGTTCCAC+TGG 0.551041 5_4:-48289708 Msa0855160:CDS
GCAGGGTAGAATACCTTTGG+TGG 0.551279 5_4:+48289595 None:intergenic
TGGAACATGTCCTCAGCCAC+AGG 0.551736 5_4:+48289712 None:intergenic
ATCAGCCGGTCCCATGATTG+TGG 0.551941 5_4:+48289681 None:intergenic
CACCCAAACATCAACAGTAA+TGG 0.557095 5_4:-48287097 Msa0855160:CDS
ACAAACCTGGGTCGGAAGCG+TGG 0.557176 5_4:+48291635 None:intergenic
GTGGAACTTGAAGCTGGTAA+GGG 0.557221 5_4:-48286535 Msa0855160:three_prime_UTR
AATGATTTGGAGAAGGGTGA+AGG 0.559376 5_4:+48291668 None:intergenic
CTGTGTCCAGCTGCGAGCTG+TGG 0.570255 5_4:+48286677 None:intergenic
ATTCACAATTGATAAATGGG+TGG 0.570929 5_4:+48286510 None:intergenic
ATTTCCTAGCTAGGAATACC+AGG 0.572459 5_4:+48286423 None:intergenic
CCTTGGAAATGGTTAAAGCT+GGG 0.572832 5_4:+48287038 None:intergenic
ACGAATCTTGAAGGAGCTCA+AGG 0.573806 5_4:-48291452 Msa0855160:CDS
TTCACAATTGATAAATGGGT+GGG 0.583857 5_4:+48286511 None:intergenic
TCATCAACCGTACAAAATGT+GGG 0.585850 5_4:-48286174 Msa0855160:three_prime_UTR
CCATGATTGTGGCTTGCCAG+TGG 0.587184 5_4:+48289692 None:intergenic
CATTACTGTTGATGTTTGGG+TGG 0.591313 5_4:+48287098 None:intergenic
GATGTTTGGGTGGAACACCT+TGG 0.592752 5_4:+48287108 None:intergenic
CCAGTATATGGGCTATCAGC+CGG 0.596648 5_4:+48289667 None:intergenic
GCTGCTCTTATTGAACAGCT+AGG 0.596651 5_4:+48286626 None:intergenic
CTGGACACAGAAGTATGCCA+TGG 0.597546 5_4:-48286664 Msa0855160:CDS
GTTGTTTATATCAGGTCCTG+TGG 0.599795 5_4:-48289728 Msa0855160:intron
GATTGATAGCGTGAGATCAA+CGG 0.608140 5_4:+48291801 None:intergenic
TGTGCAATTTCAGGAACAAG+TGG 0.608694 5_4:+48286732 None:intergenic
TATATGTCTCGACATTCTGA+AGG 0.618427 5_4:-48287071 Msa0855160:CDS
CTATCCCTTCAAGCCACCAA+AGG 0.619090 5_4:-48289608 Msa0855160:intron
GAGGAAAATGAATTGAAACC+AGG 0.619103 5_4:+48289635 None:intergenic
TTGTAAGACACTTGTTATCG+AGG 0.620922 5_4:-48286481 Msa0855160:three_prime_UTR
CCTGCACTGCATGAAGTTGG+GGG 0.626857 5_4:+48291415 None:intergenic
GGAGCTCAAGGATTTGCAGA+AGG 0.628349 5_4:-48291440 Msa0855160:CDS
TGGACACAGAAGTATGCCAT+GGG 0.652544 5_4:-48286663 Msa0855160:CDS
GGACAAACATGATCATCCCA+TGG 0.655565 5_4:+48286647 None:intergenic
GGCTTGAAGGGATAGTCAGG+AGG 0.665116 5_4:+48289616 None:intergenic
TCGACATTCTGAAGGAACAG+TGG 0.672640 5_4:-48287063 Msa0855160:CDS
CTGCACTGCATGAAGTTGGG+GGG 0.679610 5_4:+48291416 None:intergenic
ACACATGTACAAGACCGACA+GGG 0.717087 5_4:-48286712 Msa0855160:CDS
GCTGATAGCCCATATACTGG+TGG 0.737012 5_4:-48289664 Msa0855160:CDS
CAGGAACAAGTGGATCATCG+GGG 0.748108 5_4:+48286742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATATTTTTCTTTGAA+TGG + chr5_4:48286212-48286231 None:intergenic 10.0%
!!! ACAAATTTTTAATAAAAAAG+GGG + chr5_4:48286578-48286597 None:intergenic 10.0%
!!! TTTTCTTAAAACTTTTATAT+TGG - chr5_4:48286599-48286618 Msa0855160:three_prime_UTR 10.0%
!!! AAAATTGCAAATTTTCAAAT+AGG + chr5_4:48286946-48286965 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG + chr5_4:48286986-48287005 None:intergenic 15.0%
!!! TAAATTTGTTTCTTCTAAAA+TGG - chr5_4:48287231-48287250 Msa0855160:intron 15.0%
!!! TGTAATTTTTATCCATAAAA+TGG - chr5_4:48287272-48287291 Msa0855160:intron 15.0%
!!! GTAATTTTTATCCATAAAAT+GGG - chr5_4:48287273-48287292 Msa0855160:intron 15.0%
!!! TCTTTTTTTAAAATTTTGCT+TGG - chr5_4:48287341-48287360 Msa0855160:intron 15.0%
!! GCTTAAAAAAAAGATATAAA+TGG + chr5_4:48287531-48287550 None:intergenic 15.0%
!! AATAAAATGAAAATATAACC+CGG - chr5_4:48287595-48287614 Msa0855160:intron 15.0%
!! TGTTATAATATGTATGTTAA+TGG - chr5_4:48287752-48287771 Msa0855160:intron 15.0%
!! GAATAATTAATAACTAAACA+TGG - chr5_4:48288179-48288198 Msa0855160:intron 15.0%
!! CAAAAATATATTTGAGAAAA+CGG + chr5_4:48288708-48288727 None:intergenic 15.0%
!! CAACTATAAAATATTATGTA+AGG + chr5_4:48288943-48288962 None:intergenic 15.0%
!!! TACATAATATTTTATAGTTG+AGG - chr5_4:48288943-48288962 Msa0855160:intron 15.0%
!!! ACATAATATTTTATAGTTGA+GGG - chr5_4:48288944-48288963 Msa0855160:intron 15.0%
!! TTTCTATATTAAAATCATAG+AGG - chr5_4:48289891-48289910 Msa0855160:intron 15.0%
!! AATATTCACAATTGATAAAT+GGG + chr5_4:48291439-48291458 None:intergenic 15.0%
!! ATTCTTGAAAATCAAAGAAA+TGG + chr5_4:48286177-48286196 None:intergenic 20.0%
!! AAAAAGTTGAAGAATTGAAA+GGG + chr5_4:48286355-48286374 None:intergenic 20.0%
!! AAAAAAGTTGAAGAATTGAA+AGG + chr5_4:48286356-48286375 None:intergenic 20.0%
!! GATAAATGGTTAAAAATGAA+TGG + chr5_4:48286398-48286417 None:intergenic 20.0%
!!! TATTTAAGTTTGAGTGATTA+TGG - chr5_4:48286461-48286480 Msa0855160:three_prime_UTR 20.0%
!!! TTTTAATAAAAAAGGGGAAA+TGG + chr5_4:48286572-48286591 None:intergenic 20.0%
!! CACATAACTTATTAATGATT+TGG + chr5_4:48287492-48287511 None:intergenic 20.0%
!! ATCATTAATAAGTTATGTGA+TGG - chr5_4:48287493-48287512 Msa0855160:intron 20.0%
!!! TCATTTTATTTGCTGAAAAA+TGG + chr5_4:48287585-48287604 None:intergenic 20.0%
!! ATAAAATGAAAATATAACCC+GGG - chr5_4:48287596-48287615 Msa0855160:intron 20.0%
!! GAAAATGATAAATGTTTGAA+GGG - chr5_4:48287774-48287793 Msa0855160:intron 20.0%
!! AAAATGATAAATGTTTGAAG+GGG - chr5_4:48287775-48287794 Msa0855160:intron 20.0%
!!! AAATGAGACATACATTTTAT+AGG - chr5_4:48287947-48287966 Msa0855160:intron 20.0%
!! AAAGGTAAATATATGCTAAA+GGG + chr5_4:48288073-48288092 None:intergenic 20.0%
!! AAAAGGTAAATATATGCTAA+AGG + chr5_4:48288074-48288093 None:intergenic 20.0%
!! GATGAAATAACATATACAAA+AGG + chr5_4:48288091-48288110 None:intergenic 20.0%
!! TAATTATTCTTCAGAAGAAA+AGG + chr5_4:48288168-48288187 None:intergenic 20.0%
!!! CGTTTTCTCAAATATATTTT+TGG - chr5_4:48288706-48288725 Msa0855160:intron 20.0%
!!! CATAATATTTTATAGTTGAG+GGG - chr5_4:48288945-48288964 Msa0855160:intron 20.0%
!! TCATTTATAATCATGGTTAT+GGG - chr5_4:48289373-48289392 Msa0855160:intron 20.0%
!!! GTTTTAGTTAAGAAATTCAT+TGG - chr5_4:48289975-48289994 Msa0855160:intron 20.0%
!!! CTTTTACATAAATTATGACA+TGG + chr5_4:48291342-48291361 None:intergenic 20.0%
!! CAATATTCACAATTGATAAA+TGG + chr5_4:48291440-48291459 None:intergenic 20.0%
! AATTGAAAGGGAAAATGAAA+AGG + chr5_4:48286343-48286362 None:intergenic 25.0%
! ATTATGAGACAAGTGATAAA+TGG + chr5_4:48286412-48286431 None:intergenic 25.0%
!!! TTGTTGATTTGTTGTGTTTA+TGG - chr5_4:48286658-48286677 Msa0855160:exon 25.0%
! AAATATGGTCAAACTAAGTT+GGG + chr5_4:48286971-48286990 None:intergenic 25.0%
! AAAATATGGTCAAACTAAGT+TGG + chr5_4:48286972-48286991 None:intergenic 25.0%
! TTAAGCTCAAAATTATGCAT+TGG - chr5_4:48287107-48287126 Msa0855160:CDS 25.0%
! TGAAGAAACAATGAACAATT+AGG + chr5_4:48287182-48287201 None:intergenic 25.0%
!! TAATAAGTTATGTGATGGAA+TGG - chr5_4:48287498-48287517 Msa0855160:intron 25.0%
!!! TTTTTTAAGCCTGAAATACT+AGG - chr5_4:48287541-48287560 Msa0855160:intron 25.0%
! TAAAATGAAAATATAACCCG+GGG - chr5_4:48287597-48287616 Msa0855160:intron 25.0%
! GGAAAATGATAAATGTTTGA+AGG - chr5_4:48287773-48287792 Msa0855160:intron 25.0%
!!! TGATTTGTTTGTAATTAGCT+TGG - chr5_4:48288135-48288154 Msa0855160:intron 25.0%
!! GATTTGTTTGTAATTAGCTT+GGG - chr5_4:48288136-48288155 Msa0855160:intron 25.0%
!! ATTTGTTTGTAATTAGCTTG+GGG - chr5_4:48288137-48288156 Msa0855160:intron 25.0%
!!! TTGTTGTTGTTGTTTATATC+AGG - chr5_4:48288207-48288226 Msa0855160:intron 25.0%
!!! TTCAAAAGCATTTTGATTCA+AGG - chr5_4:48288538-48288557 Msa0855160:intron 25.0%
!!! TTGTTTTTCTCTTTTGTTGT+GGG - chr5_4:48289103-48289122 Msa0855160:intron 25.0%
! GTCATTTATAATCATGGTTA+TGG - chr5_4:48289372-48289391 Msa0855160:intron 25.0%
!!! GTTTTTTCCTTTTCATGATT+GGG - chr5_4:48289469-48289488 Msa0855160:intron 25.0%
!! ATTTTTACCCAATCATGAAA+AGG + chr5_4:48289479-48289498 None:intergenic 25.0%
! CATGATTGGGTAAAAATATT+TGG - chr5_4:48289482-48289501 Msa0855160:intron 25.0%
! TTATTGAATAAAATCCACGT+GGG + chr5_4:48289662-48289681 None:intergenic 25.0%
! GAAAACACATTACACATATA+TGG + chr5_4:48289830-48289849 None:intergenic 25.0%
! TGTATATTGTTTAGATACAG+AGG - chr5_4:48290209-48290228 Msa0855160:intron 25.0%
!!! TTTCTCGTAGATTTTTGTTT+CGG - chr5_4:48290506-48290525 Msa0855160:intron 25.0%
! AAATATACTACGACAATACT+CGG + chr5_4:48291034-48291053 None:intergenic 25.0%
! TATTATTTGGATTGTGTTGT+AGG - chr5_4:48291547-48291566 Msa0855160:intron 25.0%
! AGAATGAATGATTTGGAGAA+GGG + chr5_4:48286284-48286303 None:intergenic 30.0%
! AAGAATGAATGATTTGGAGA+AGG + chr5_4:48286285-48286304 None:intergenic 30.0%
TGGAAGAAGAATGAATGATT+TGG + chr5_4:48286291-48286310 None:intergenic 30.0%
!!! TCTTCAACTTTTTTCGTTTC+TGG - chr5_4:48286362-48286381 Msa0855160:three_prime_UTR 30.0%
!!! CTTCAACTTTTTTCGTTTCT+GGG - chr5_4:48286363-48286382 Msa0855160:three_prime_UTR 30.0%
!! TGATTTGTTGTGTTTATGGA+TGG - chr5_4:48286662-48286681 Msa0855160:CDS 30.0%
AAAATAACCTATAGCATGCT+TGG - chr5_4:48286766-48286785 Msa0855160:CDS 30.0%
! GGATAAGGAAATTGTGATTT+TGG - chr5_4:48286813-48286832 Msa0855160:intron 30.0%
! TGATAATGCGTTATTGATTG+TGG - chr5_4:48286843-48286862 Msa0855160:intron 30.0%
! ATAGGTAGAATCCCATTTTA+TGG + chr5_4:48287287-48287306 None:intergenic 30.0%
GAATTCAAACCTAGTATTTC+AGG + chr5_4:48287553-48287572 None:intergenic 30.0%
AAAATGAAAATATAACCCGG+GGG - chr5_4:48287598-48287617 Msa0855160:intron 30.0%
TAGAATCAACGTTAATCCAA+TGG + chr5_4:48287672-48287691 None:intergenic 30.0%
!! GGATTAACGTTGATTCTATT+TGG - chr5_4:48287674-48287693 Msa0855160:intron 30.0%
!! TAACGTTGATTCTATTTGGA+AGG - chr5_4:48287678-48287697 Msa0855160:intron 30.0%
TGTCTGTAATCAATTGTTTG+TGG - chr5_4:48287871-48287890 Msa0855160:intron 30.0%
! TAGTTGATACGTACATTTGT+TGG - chr5_4:48287910-48287929 Msa0855160:intron 30.0%
! TACGTACATTTGTTGGAATT+TGG - chr5_4:48287917-48287936 Msa0855160:intron 30.0%
GTGACTGTGAACTTATTATT+TGG - chr5_4:48288567-48288586 Msa0855160:intron 30.0%
GAAGTTGTCTTCTTTGTAAA+AGG - chr5_4:48289044-48289063 Msa0855160:intron 30.0%
TCTTCTTTGTAAAAGGCAAA+TGG - chr5_4:48289051-48289070 Msa0855160:intron 30.0%
!! CTTGTTTTTCTCTTTTGTTG+TGG - chr5_4:48289102-48289121 Msa0855160:intron 30.0%
!!! TTTTGTTGACTTAGTTTCCT+AGG - chr5_4:48289128-48289147 Msa0855160:intron 30.0%
GAAAAATACAAGAGTGGATA+AGG + chr5_4:48289267-48289286 None:intergenic 30.0%
! TATAAATGACTTGCACAACA+TGG + chr5_4:48289362-48289381 None:intergenic 30.0%
GTGCAAGTCATTTATAATCA+TGG - chr5_4:48289366-48289385 Msa0855160:intron 30.0%
! AGATTAAGAGTAGAGTACTA+TGG - chr5_4:48289422-48289441 Msa0855160:intron 30.0%
! GATTAAGAGTAGAGTACTAT+GGG - chr5_4:48289423-48289442 Msa0855160:intron 30.0%
!!! GGTTTTTTCCTTTTCATGAT+TGG - chr5_4:48289468-48289487 Msa0855160:intron 30.0%
! CTTTTCGTAAACTCTATTAG+TGG + chr5_4:48289537-48289556 None:intergenic 30.0%
CTAATAGAGTTTACGAAAAG+AGG - chr5_4:48289537-48289556 Msa0855160:intron 30.0%
TCTAACAATCACTCTCTTAT+TGG - chr5_4:48289580-48289599 Msa0855160:intron 30.0%
CTAACAATCACTCTCTTATT+GGG - chr5_4:48289581-48289600 Msa0855160:intron 30.0%
CTTATTGAATAAAATCCACG+TGG + chr5_4:48289663-48289682 None:intergenic 30.0%
TGCTAAGAAAAGTGGAAATT+AGG - chr5_4:48290126-48290145 Msa0855160:intron 30.0%
TTGTTTAGATACAGAGGAAA+TGG - chr5_4:48290215-48290234 Msa0855160:intron 30.0%
! TTTGTTGGTTGAACAGAAAA+TGG - chr5_4:48290261-48290280 Msa0855160:intron 30.0%
TCAAAACTCAGAAATTGTGA+AGG + chr5_4:48290305-48290324 None:intergenic 30.0%
!! TCACAATTTCTGAGTTTTGA+AGG - chr5_4:48290305-48290324 Msa0855160:intron 30.0%
ATTAATATACACCGTTAAGG+TGG + chr5_4:48290364-48290383 None:intergenic 30.0%
AGTAGGTTATGATTATTGCA+AGG + chr5_4:48290403-48290422 None:intergenic 30.0%
GATAGAAAAGGATAAGACAT+GGG + chr5_4:48290438-48290457 None:intergenic 30.0%
!!! CCTATTTTTATCTGTTTTGG+CGG - chr5_4:48290463-48290482 Msa0855160:intron 30.0%
!!! CTATTTTTATCTGTTTTGGC+GGG - chr5_4:48290464-48290483 Msa0855160:intron 30.0%
!! TTCTCGTAGATTTTTGTTTC+GGG - chr5_4:48290507-48290526 Msa0855160:intron 30.0%
AGATAGCTATAAAAACAGAC+TGG + chr5_4:48290595-48290614 None:intergenic 30.0%
AGAAAATCCTACTGTAAGTT+GGG + chr5_4:48290684-48290703 None:intergenic 30.0%
TAGAAAATCCTACTGTAAGT+TGG + chr5_4:48290685-48290704 None:intergenic 30.0%
GTAATATCAAACCTTGGAAA+TGG + chr5_4:48290919-48290938 None:intergenic 30.0%
CATTATCTATGTTCAGTAAG+TGG + chr5_4:48290961-48290980 None:intergenic 30.0%
! TGTCGTAGTATATTTTCAGT+TGG - chr5_4:48291039-48291058 Msa0855160:intron 30.0%
! GTCGTAGTATATTTTCAGTT+GGG - chr5_4:48291040-48291059 Msa0855160:intron 30.0%
ACTTGCACCAAAATTATAAC+CGG + chr5_4:48291086-48291105 None:intergenic 30.0%
! GGTGCAAGTTTTACTTATAA+AGG - chr5_4:48291097-48291116 Msa0855160:intron 30.0%
ACAAAAGGACCTAAAATAGA+GGG + chr5_4:48291153-48291172 None:intergenic 30.0%
ATGCCATCTTTATTGTTTAG+TGG - chr5_4:48291389-48291408 Msa0855160:intron 30.0%
GTTCCACTAAACAATAAAGA+TGG + chr5_4:48291395-48291414 None:intergenic 30.0%
TTCACAATTGATAAATGGGT+GGG + chr5_4:48291435-48291454 None:intergenic 30.0%
ATTCACAATTGATAAATGGG+TGG + chr5_4:48291436-48291455 None:intergenic 30.0%
CTAGGAAATGGCTTATTATT+TGG - chr5_4:48291534-48291553 Msa0855160:intron 30.0%
AGGAGAAGAAAAACAAACCT+GGG + chr5_4:48286323-48286342 None:intergenic 35.0%
AAGGAGAAGAAAAACAAACC+TGG + chr5_4:48286324-48286343 None:intergenic 35.0%
TCAACCGTGTCATGTATTAT+GGG - chr5_4:48287144-48287163 Msa0855160:intron 35.0%
! TCTAAAACCAATGCACACAA+AGG + chr5_4:48287385-48287404 None:intergenic 35.0%
!!! TTGTGTGCATTGGTTTTAGA+TGG - chr5_4:48287385-48287404 Msa0855160:intron 35.0%
!!! TGCATTGGTTTTAGATGGTT+AGG - chr5_4:48287390-48287409 Msa0855160:intron 35.0%
GTTCATTCCAGTGACTAATT+TGG - chr5_4:48287845-48287864 Msa0855160:intron 35.0%
AATCAATTGTTTGTGGAGCT+TGG - chr5_4:48287878-48287897 Msa0855160:intron 35.0%
ATCAATTGTTTGTGGAGCTT+GGG - chr5_4:48287879-48287898 Msa0855160:intron 35.0%
AAGGGAACTTATTAGAAGAG+AGG + chr5_4:48288055-48288074 None:intergenic 35.0%
GAGGAAAATGAATTGAAACC+AGG + chr5_4:48288311-48288330 None:intergenic 35.0%
CTAATGTGAGTAATGAAGCA+GGG + chr5_4:48288368-48288387 None:intergenic 35.0%
! TCTTGTATTGTCGTGCTTTT+TGG - chr5_4:48288390-48288409 Msa0855160:intron 35.0%
AAGAACATGTTGAATGAGAG+AGG + chr5_4:48288457-48288476 None:intergenic 35.0%
TGGTCTTCTTCATTCTTAAG+CGG - chr5_4:48288587-48288606 Msa0855160:intron 35.0%
TGTAAGCATTTGTGCAAAAC+AGG + chr5_4:48288845-48288864 None:intergenic 35.0%
AAACTATTTGAGTACCCTTC+TGG + chr5_4:48289011-48289030 None:intergenic 35.0%
GTAAAAGGCAAATGGAAGTA+TGG - chr5_4:48289059-48289078 Msa0855160:intron 35.0%
!!! TTAGTTTCCTAGGAGCATTT+TGG - chr5_4:48289138-48289157 Msa0855160:intron 35.0%
!!! TAGTTTCCTAGGAGCATTTT+GGG - chr5_4:48289139-48289158 Msa0855160:intron 35.0%
AAAAGAAACCACATAGGGAT+GGG + chr5_4:48289236-48289255 None:intergenic 35.0%
CCTTCAAAAGAAACCACATA+GGG + chr5_4:48289241-48289260 None:intergenic 35.0%
TCCTTCAAAAGAAACCACAT+AGG + chr5_4:48289242-48289261 None:intergenic 35.0%
ACAGAGGAAAAATACAAGAG+TGG + chr5_4:48289273-48289292 None:intergenic 35.0%
TTCCTCTGTATTTCATGATG+CGG - chr5_4:48289284-48289303 Msa0855160:intron 35.0%
!!! AGGACATCAGAAGTTTTTTG+TGG - chr5_4:48289307-48289326 Msa0855160:intron 35.0%
!!! GGACATCAGAAGTTTTTTGT+GGG - chr5_4:48289308-48289327 Msa0855160:intron 35.0%
AGTACTCTACTCTTAATCTG+TGG + chr5_4:48289421-48289440 None:intergenic 35.0%
! TGGATTTCTCAGTCCATTTT+AGG - chr5_4:48289502-48289521 Msa0855160:intron 35.0%
!! GAGTGTTAGAGAGTGTTATA+AGG - chr5_4:48289682-48289701 Msa0855160:CDS 35.0%
ACGTGAATTTGCATGTATCT+AGG - chr5_4:48290011-48290030 Msa0855160:intron 35.0%
TCTAGGTATAGATCTAGACA+TGG - chr5_4:48290028-48290047 Msa0855160:intron 35.0%
! TAGATCTAGACATGGTTCTA+TGG - chr5_4:48290036-48290055 Msa0855160:intron 35.0%
! AGATCTAGACATGGTTCTAT+GGG - chr5_4:48290037-48290056 Msa0855160:intron 35.0%
TTAGGATGCAAGAGGAAAAT+AGG - chr5_4:48290144-48290163 Msa0855160:intron 35.0%
AGCAAAATAGAGAGAAGAGA+GGG - chr5_4:48290170-48290189 Msa0855160:intron 35.0%
! TTCAATCGTCTCTGATTTGT+TGG - chr5_4:48290246-48290265 Msa0855160:intron 35.0%
TTGGTTGAACAGAAAATGGA+TGG - chr5_4:48290265-48290284 Msa0855160:intron 35.0%
AAATGGATGGATGAGGAAAA+TGG - chr5_4:48290278-48290297 Msa0855160:intron 35.0%
GGGATTAATATACACCGTTA+AGG + chr5_4:48290367-48290386 None:intergenic 35.0%
ATGGGAGAAACAAAAACAGT+AGG + chr5_4:48290420-48290439 None:intergenic 35.0%
CGATAGAAAAGGATAAGACA+TGG + chr5_4:48290439-48290458 None:intergenic 35.0%
! TGTCTTATCCTTTTCTATCG+AGG - chr5_4:48290439-48290458 Msa0855160:intron 35.0%
! GTCTTATCCTTTTCTATCGA+GGG - chr5_4:48290440-48290459 Msa0855160:intron 35.0%
!!! GGGCCTATTTTTATCTGTTT+TGG - chr5_4:48290460-48290479 Msa0855160:intron 35.0%
CCGCCAAAACAGATAAAAAT+AGG + chr5_4:48290466-48290485 None:intergenic 35.0%
!! TCTCGTAGATTTTTGTTTCG+GGG - chr5_4:48290508-48290527 Msa0855160:intron 35.0%
!!! AAACTACTGCTGTTTTACTG+TGG - chr5_4:48290721-48290740 Msa0855160:intron 35.0%
! GTTTTACTGTGGTAGTAAGT+TGG - chr5_4:48290732-48290751 Msa0855160:intron 35.0%
TGCCATTACTGTTGATGTTT+GGG + chr5_4:48290851-48290870 None:intergenic 35.0%
TATATGTCTCGACATTCTGA+AGG - chr5_4:48290872-48290891 Msa0855160:intron 35.0%
AGCAGAGTAATATCAAACCT+TGG + chr5_4:48290925-48290944 None:intergenic 35.0%
AATTATAACCGGCTAATGCT+TGG + chr5_4:48291075-48291094 None:intergenic 35.0%
! GCATTAGCCGGTTATAATTT+TGG - chr5_4:48291076-48291095 Msa0855160:intron 35.0%
GACAAAAGGACCTAAAATAG+AGG + chr5_4:48291154-48291173 None:intergenic 35.0%
ACAACGAGCAAATTGACAAA+AGG + chr5_4:48291168-48291187 None:intergenic 35.0%
TTGTACATGTGTGCAATTTC+AGG + chr5_4:48291223-48291242 None:intergenic 35.0%
!! TTGTAAGACACTTGTTATCG+AGG - chr5_4:48291462-48291481 Msa0855160:CDS 35.0%
TAATAAGCCATTTCCTAGCT+AGG + chr5_4:48291532-48291551 None:intergenic 35.0%
! GGATGTGGATTAAGATCAAA+TGG + chr5_4:48291717-48291736 None:intergenic 35.0%
CTATCAAGCTATCTCGATTA+TGG + chr5_4:48291738-48291757 None:intergenic 35.0%
TTCATCAACCGTACAAAATG+TGG - chr5_4:48291768-48291787 Msa0855160:five_prime_UTR 35.0%
TCATCAACCGTACAAAATGT+GGG - chr5_4:48291769-48291788 Msa0855160:five_prime_UTR 35.0%
! TTGAGAACCCACATTTTGTA+CGG + chr5_4:48291779-48291798 None:intergenic 35.0%
! AATGATTTGGAGAAGGGTGA+AGG + chr5_4:48286278-48286297 None:intergenic 40.0%
GAAGAAAAACAAACCTGGGT+CGG + chr5_4:48286319-48286338 None:intergenic 40.0%
!!! GGATCCGAGGTTTTAAATAG+CGG - chr5_4:48286787-48286806 Msa0855160:intron 40.0%
TTTAAATAGCGGTCGGGATA+AGG - chr5_4:48286798-48286817 Msa0855160:intron 40.0%
TCAAATAGGCCATCTATTGC+AGG + chr5_4:48286932-48286951 None:intergenic 40.0%
! TATGCATTGGCATGCGTAAT+AGG - chr5_4:48287120-48287139 Msa0855160:CDS 40.0%
! ATGCATTGGCATGCGTAATA+GGG - chr5_4:48287121-48287140 Msa0855160:CDS 40.0%
GTCAACCGTGTCATGTATTA+TGG - chr5_4:48287143-48287162 Msa0855160:intron 40.0%
CGAAAACAGCTGCAACAAAA+CGG + chr5_4:48287311-48287330 None:intergenic 40.0%
!! TTTTGTTGCAGCTGTTTTCG+CGG - chr5_4:48287311-48287330 Msa0855160:intron 40.0%
!!! TGGTTTTAGATGGTTAGGTG+AGG - chr5_4:48287395-48287414 Msa0855160:intron 40.0%
!!! GGTTTTAGATGGTTAGGTGA+GGG - chr5_4:48287396-48287415 Msa0855160:intron 40.0%
AGGTGAGGGTTACATTATAG+CGG - chr5_4:48287410-48287429 Msa0855160:intron 40.0%
!! AGCTTGGTGGATTTCTTATG+AGG - chr5_4:48287436-48287455 Msa0855160:intron 40.0%
!! GCTTGGTGGATTTCTTATGA+GGG - chr5_4:48287437-48287456 Msa0855160:intron 40.0%
!! CTTGGTGGATTTCTTATGAG+GGG - chr5_4:48287438-48287457 Msa0855160:intron 40.0%
ACGTTAATCCAATGGTGTAG+TGG + chr5_4:48287664-48287683 None:intergenic 40.0%
ATAAATGTTTGAAGGGGCCA+TGG - chr5_4:48287781-48287800 Msa0855160:intron 40.0%
GACACATCCAAATTAGTCAC+TGG + chr5_4:48287855-48287874 None:intergenic 40.0%
TCAATTGTTTGTGGAGCTTG+GGG - chr5_4:48287880-48287899 Msa0855160:intron 40.0%
GTTGTTTATATCAGGTCCTG+TGG - chr5_4:48288215-48288234 Msa0855160:intron 40.0%
! AATACCTTTGGTGGCTTGAA+GGG + chr5_4:48288342-48288361 None:intergenic 40.0%
CCTAATGTGAGTAATGAAGC+AGG + chr5_4:48288369-48288388 None:intergenic 40.0%
CCTGCTTCATTACTCACATT+AGG - chr5_4:48288366-48288385 Msa0855160:intron 40.0%
!! GTACCGACATTTTCGATGAA+AGG - chr5_4:48288637-48288656 Msa0855160:intron 40.0%
ACGCCTTTCATCGAAAATGT+CGG + chr5_4:48288643-48288662 None:intergenic 40.0%
TTCACTGCAATCACATGTCT+CGG + chr5_4:48288680-48288699 None:intergenic 40.0%
AAGGACAAAGACATTGGACA+CGG + chr5_4:48288743-48288762 None:intergenic 40.0%
TGAAGCAAGGACAAAGACAT+TGG + chr5_4:48288749-48288768 None:intergenic 40.0%
TGTCTTTGTCCTTGCTTCAT+AGG - chr5_4:48288750-48288769 Msa0855160:intron 40.0%
GTCTTTGTCCTTGCTTCATA+GGG - chr5_4:48288751-48288770 Msa0855160:intron 40.0%
AGAGTGAAAACCCTTGACAT+CGG - chr5_4:48288869-48288888 Msa0855160:intron 40.0%
! GTTGAGGGGTAGAATACTTT+TGG - chr5_4:48288959-48288978 Msa0855160:intron 40.0%
! AGGGGTAGAATACTTTTGGT+GGG - chr5_4:48288963-48288982 Msa0855160:intron 40.0%
TAAATTTGAAGGGGCCAGAA+GGG - chr5_4:48288994-48289013 Msa0855160:intron 40.0%
! AAGGCAAATGGAAGTATGGT+TGG - chr5_4:48289063-48289082 Msa0855160:intron 40.0%
! AGGCAAATGGAAGTATGGTT+GGG - chr5_4:48289064-48289083 Msa0855160:intron 40.0%
!!! AGTTTCCTAGGAGCATTTTG+GGG - chr5_4:48289140-48289159 Msa0855160:intron 40.0%
TCCTTCTGATGTGTATGCTT+TGG - chr5_4:48289189-48289208 Msa0855160:intron 40.0%
CCTTCTGATGTGTATGCTTT+GGG - chr5_4:48289190-48289209 Msa0855160:intron 40.0%
CTTCTGATGTGTATGCTTTG+GGG - chr5_4:48289191-48289210 Msa0855160:intron 40.0%
TTCTGATGTGTATGCTTTGG+GGG - chr5_4:48289192-48289211 Msa0855160:intron 40.0%
!!! TATGCTTTGGGGGTTTTATG+TGG - chr5_4:48289202-48289221 Msa0855160:intron 40.0%
!!! ATGCTTTGGGGGTTTTATGT+GGG - chr5_4:48289203-48289222 Msa0855160:intron 40.0%
AAAGAAACCACATAGGGATG+GGG + chr5_4:48289235-48289254 None:intergenic 40.0%
CAAAAGAAACCACATAGGGA+TGG + chr5_4:48289237-48289256 None:intergenic 40.0%
! CCCTATGTGGTTTCTTTTGA+AGG - chr5_4:48289238-48289257 Msa0855160:intron 40.0%
! TAGAGAGATAACTTGCGTCT+AGG - chr5_4:48289447-48289466 Msa0855160:intron 40.0%
GTGGACAACTTCTCCTAAAA+TGG + chr5_4:48289518-48289537 None:intergenic 40.0%
GAAATGGATCCCACATAAAG+TGG - chr5_4:48289631-48289650 Msa0855160:CDS 40.0%
TTATTCGTAAGCGAGAGTCT+TGG - chr5_4:48289917-48289936 Msa0855160:intron 40.0%
TGTTCAGCACAATCTCATCT+TGG - chr5_4:48290097-48290116 Msa0855160:intron 40.0%
GGTCACTATGCTAAGAAAAG+TGG - chr5_4:48290118-48290137 Msa0855160:intron 40.0%
AGTGGAAATTAGGATGCAAG+AGG - chr5_4:48290136-48290155 Msa0855160:intron 40.0%
GAGCAAAATAGAGAGAAGAG+AGG - chr5_4:48290169-48290188 Msa0855160:intron 40.0%
GAGAGAAGAGAGGGAAAAAT+AGG - chr5_4:48290179-48290198 Msa0855160:intron 40.0%
GAACAGAAAATGGATGGATG+AGG - chr5_4:48290271-48290290 Msa0855160:intron 40.0%
ATATACACCGTTAAGGTGGA+TGG + chr5_4:48290360-48290379 None:intergenic 40.0%
AAATAGGCCCTCGATAGAAA+AGG + chr5_4:48290450-48290469 None:intergenic 40.0%
!! AACAGACTGGATTAGCAATG+TGG + chr5_4:48290582-48290601 None:intergenic 40.0%
CTAATGTGCTTAACAACTGC+AGG - chr5_4:48290800-48290819 Msa0855160:intron 40.0%
!!! AACAACTGCAGGTTGCTTTT+AGG - chr5_4:48290811-48290830 Msa0855160:intron 40.0%
CATTACTGTTGATGTTTGGG+TGG + chr5_4:48290848-48290867 None:intergenic 40.0%
CACCCAAACATCAACAGTAA+TGG - chr5_4:48290846-48290865 Msa0855160:intron 40.0%
CTGCCATTACTGTTGATGTT+TGG + chr5_4:48290852-48290871 None:intergenic 40.0%
CCTTGGAAATGGTTAAAGCT+GGG + chr5_4:48290908-48290927 None:intergenic 40.0%
ACCTTGGAAATGGTTAAAGC+TGG + chr5_4:48290909-48290928 None:intergenic 40.0%
! GTCAATTTGCTCGTTGTTGA+CGG - chr5_4:48291171-48291190 Msa0855160:intron 40.0%
TTCAGGAACAAGTGGATCAT+CGG + chr5_4:48291206-48291225 None:intergenic 40.0%
TGTGCAATTTCAGGAACAAG+TGG + chr5_4:48291214-48291233 None:intergenic 40.0%
TGTTTAGTGGAACTTGAAGC+TGG - chr5_4:48291402-48291421 Msa0855160:intron 40.0%
! AATCTTTGTGCTTGTTGACC+TGG - chr5_4:48291502-48291521 Msa0855160:intron 40.0%
ATTTCCTAGCTAGGAATACC+AGG + chr5_4:48291523-48291542 None:intergenic 40.0%
TGGTATTCCTAGCTAGGAAA+TGG - chr5_4:48291522-48291541 Msa0855160:intron 40.0%
TTGGATTGTGTTGTAGGTCT+TGG - chr5_4:48291553-48291572 Msa0855160:intron 40.0%
AGCTATCTCGATTATGGATG+TGG + chr5_4:48291732-48291751 None:intergenic 40.0%
ACGAATCTTGAAGGAGCTCA+AGG - chr5_4:48286491-48286510 Msa0855160:three_prime_UTR 45.0%
AACCTGCACTGCATGAAGTT+GGG + chr5_4:48286533-48286552 None:intergenic 45.0%
AAACCTGCACTGCATGAAGT+TGG + chr5_4:48286534-48286553 None:intergenic 45.0%
! CCGACCGCTATTTAAAACCT+CGG + chr5_4:48286794-48286813 None:intergenic 45.0%
!!! CCGAGGTTTTAAATAGCGGT+CGG - chr5_4:48286791-48286810 Msa0855160:intron 45.0%
!!! CGAGGTTTTAAATAGCGGTC+GGG - chr5_4:48286792-48286811 Msa0855160:intron 45.0%
ATAGGCCATCTATTGCAGGA+CGG + chr5_4:48286928-48286947 None:intergenic 45.0%
CCGTCCCATAATACATGACA+CGG + chr5_4:48287151-48287170 None:intergenic 45.0%
CCGTGTCATGTATTATGGGA+CGG - chr5_4:48287148-48287167 Msa0855160:intron 45.0%
TGTCATGTATTATGGGACGG+AGG - chr5_4:48287151-48287170 Msa0855160:intron 45.0%
GTCATGTATTATGGGACGGA+GGG - chr5_4:48287152-48287171 Msa0855160:intron 45.0%
CAGCTGCAACAAAACGGTAT+AGG + chr5_4:48287305-48287324 None:intergenic 45.0%
TCTGCTTCCTTTGTGTGCAT+TGG - chr5_4:48287375-48287394 Msa0855160:intron 45.0%
TACATTATAGCGGCAGAGCT+TGG - chr5_4:48287420-48287439 Msa0855160:intron 45.0%
CTGATCTTGTATGAGACAGC+GGG + chr5_4:48287810-48287829 None:intergenic 45.0%
GCTGATCTTGTATGAGACAG+CGG + chr5_4:48287811-48287830 None:intergenic 45.0%
TCTCATACAAGATCAGCCAC+TGG - chr5_4:48287814-48287833 Msa0855160:intron 45.0%
CTCATACAAGATCAGCCACT+GGG - chr5_4:48287815-48287834 Msa0855160:intron 45.0%
GAATGAACAATCTCACCCAG+TGG + chr5_4:48287833-48287852 None:intergenic 45.0%
CAATTGTTTGTGGAGCTTGG+GGG - chr5_4:48287881-48287900 Msa0855160:intron 45.0%
! TCCATGCTTTTCCCTCTGAA+AGG - chr5_4:48288027-48288046 Msa0855160:intron 45.0%
GGAACACACCACCAGTATAT+GGG + chr5_4:48288290-48288309 None:intergenic 45.0%
AGGAACACACCACCAGTATA+TGG + chr5_4:48288291-48288310 None:intergenic 45.0%
! ATATACTGGTGGTGTGTTCC+TGG - chr5_4:48288290-48288309 Msa0855160:intron 45.0%
! GAATACCTTTGGTGGCTTGA+AGG + chr5_4:48288343-48288362 None:intergenic 45.0%
GAAGCAGGGTAGAATACCTT+TGG + chr5_4:48288354-48288373 None:intergenic 45.0%
TCTTCATTCTTAAGCGGTCG+TGG - chr5_4:48288593-48288612 Msa0855160:intron 45.0%
CGAAAATGTCGGTACTACAG+AGG + chr5_4:48288632-48288651 None:intergenic 45.0%
ATTCTCGACCCTATGAAGCA+AGG + chr5_4:48288762-48288781 None:intergenic 45.0%
CTGCTCGAATTGTTTCCAGT+TGG - chr5_4:48288808-48288827 Msa0855160:intron 45.0%
TCGAATTGTTTCCAGTTGGC+TGG - chr5_4:48288812-48288831 Msa0855160:intron 45.0%
! TTGTTTCCAGTTGGCTGGTT+TGG - chr5_4:48288817-48288836 Msa0855160:intron 45.0%
GAGTGAAAACCCTTGACATC+GGG - chr5_4:48288870-48288889 Msa0855160:intron 45.0%
AAAACCACACCCGATGTCAA+GGG + chr5_4:48288882-48288901 None:intergenic 45.0%
! GAGGGGTAGAATACTTTTGG+TGG - chr5_4:48288962-48288981 Msa0855160:intron 45.0%
! GGTAGAATACTTTTGGTGGG+TGG - chr5_4:48288966-48288985 Msa0855160:intron 45.0%
!! AGAATACTTTTGGTGGGTGG+CGG - chr5_4:48288969-48288988 Msa0855160:intron 45.0%
GTAAATTTGAAGGGGCCAGA+AGG - chr5_4:48288993-48289012 Msa0855160:intron 45.0%
CCCAAAGCATACACATCAGA+AGG + chr5_4:48289193-48289212 None:intergenic 45.0%
!!! TGCTTTGGGGGTTTTATGTG+GGG - chr5_4:48289204-48289223 Msa0855160:intron 45.0%
AAGAAACCACATAGGGATGG+GGG + chr5_4:48289234-48289253 None:intergenic 45.0%
CTCCGCATCATGAAATACAG+AGG + chr5_4:48289289-48289308 None:intergenic 45.0%
CTCTGTATTTCATGATGCGG+AGG - chr5_4:48289287-48289306 Msa0855160:intron 45.0%
! ATCTGTGGTTGATGCCTTGA+CGG + chr5_4:48289406-48289425 None:intergenic 45.0%
CTTATTGGGTGAAACCCATG+TGG - chr5_4:48289595-48289614 Msa0855160:intron 45.0%
! TGGATCCCACACTTTGGAAA+TGG - chr5_4:48289615-48289634 Msa0855160:CDS 45.0%
GGGATCCATTTCCAAAGTGT+GGG + chr5_4:48289623-48289642 None:intergenic 45.0%
TGGGATCCATTTCCAAAGTG+TGG + chr5_4:48289624-48289643 None:intergenic 45.0%
TGGGTCTCACCACTTTATGT+GGG + chr5_4:48289643-48289662 None:intergenic 45.0%
CACTTAGCCATCCACCTTAA+CGG - chr5_4:48290350-48290369 Msa0855160:intron 45.0%
!! CATGGTGGACTGTAAAAGAG+AGG + chr5_4:48290536-48290555 None:intergenic 45.0%
! TCGACATTCTGAAGGAACAG+TGG - chr5_4:48290880-48290899 Msa0855160:intron 45.0%
! CCCAGCTTTAACCATTTCCA+AGG - chr5_4:48290905-48290924 Msa0855160:intron 45.0%
TGTGATAGCCAAGCATTAGC+CGG - chr5_4:48291064-48291083 Msa0855160:intron 45.0%
TCAGGAACAAGTGGATCATC+GGG + chr5_4:48291205-48291224 None:intergenic 45.0%
ACACATGTACAAGACCGACA+GGG - chr5_4:48291231-48291250 Msa0855160:intron 45.0%
! TGGACACAGAAGTATGCCAT+GGG - chr5_4:48291280-48291299 Msa0855160:intron 45.0%
GGACAAACATGATCATCCCA+TGG + chr5_4:48291299-48291318 None:intergenic 45.0%
GCTGCTCTTATTGAACAGCT+AGG + chr5_4:48291320-48291339 None:intergenic 45.0%
AGTGGAACTTGAAGCTGGTA+AGG - chr5_4:48291407-48291426 Msa0855160:intron 45.0%
GTGGAACTTGAAGCTGGTAA+GGG - chr5_4:48291408-48291427 Msa0855160:intron 45.0%
TTGACCTGGTATTCCTAGCT+AGG - chr5_4:48291516-48291535 Msa0855160:intron 45.0%
!!! AACAAATTTTTAATAAAAAA+GGG + chr5_4:48286579-48286598 None:intergenic 5.0%
!!! AAACAAATTTTTAATAAAAA+AGG + chr5_4:48286580-48286599 None:intergenic 5.0%
!! ATATATAATCTTAAAATATT+TGG + chr5_4:48287465-48287484 None:intergenic 5.0%
GATTTGGAGAAGGGTGAAGG+AGG + chr5_4:48286275-48286294 None:intergenic 50.0%
! GGCGTCGAAACGAATCTTGA+AGG - chr5_4:48286482-48286501 Msa0855160:three_prime_UTR 50.0%
GGAGCTCAAGGATTTGCAGA+AGG - chr5_4:48286503-48286522 Msa0855160:three_prime_UTR 50.0%
ACCTGCACTGCATGAAGTTG+GGG + chr5_4:48286532-48286551 None:intergenic 50.0%
CTCGGATCCAAGCATGCTAT+AGG + chr5_4:48286776-48286795 None:intergenic 50.0%
CTATAGCATGCTTGGATCCG+AGG - chr5_4:48286774-48286793 Msa0855160:CDS 50.0%
ATTATAGCGGCAGAGCTTGG+TGG - chr5_4:48287423-48287442 Msa0855160:intron 50.0%
GTCCTTCGAGCTGCAAAAGA+CGG - chr5_4:48287633-48287652 Msa0855160:intron 50.0%
GCCTTTCAGAGGGAAAAGCA+TGG + chr5_4:48288031-48288050 None:intergenic 50.0%
GAAGAGAGGAGCCTTTCAGA+GGG + chr5_4:48288041-48288060 None:intergenic 50.0%
AGAAGAGAGGAGCCTTTCAG+AGG + chr5_4:48288042-48288061 None:intergenic 50.0%
TATATCAGGTCCTGTGGCTG+AGG - chr5_4:48288221-48288240 Msa0855160:intron 50.0%
CACTGGCAAGCCACAATCAT+GGG - chr5_4:48288252-48288271 Msa0855160:intron 50.0%
! CCAGTATATGGGCTATCAGC+CGG + chr5_4:48288279-48288298 None:intergenic 50.0%
GCTGATAGCCCATATACTGG+TGG - chr5_4:48288279-48288298 Msa0855160:intron 50.0%
CTATCCCTTCAAGCCACCAA+AGG - chr5_4:48288335-48288354 Msa0855160:intron 50.0%
GCAGGGTAGAATACCTTTGG+TGG + chr5_4:48288351-48288370 None:intergenic 50.0%
AAAACCCTTGACATCGGGTG+TGG - chr5_4:48288875-48288894 Msa0855160:intron 50.0%
GAAAACCACACCCGATGTCA+AGG + chr5_4:48288883-48288902 None:intergenic 50.0%
! GGTGGCGGCGTAAATTTGAA+GGG - chr5_4:48288984-48289003 Msa0855160:intron 50.0%
GTGGCGGCGTAAATTTGAAG+GGG - chr5_4:48288985-48289004 Msa0855160:intron 50.0%
AACTGCCCCAAAATGCTCCT+AGG + chr5_4:48289148-48289167 None:intergenic 50.0%
AGAAACCACATAGGGATGGG+GGG + chr5_4:48289233-48289252 None:intergenic 50.0%
TTATGGGAGAAGACCCGTCA+AGG - chr5_4:48289389-48289408 Msa0855160:intron 50.0%
! TCTGTGGTTGATGCCTTGAC+GGG + chr5_4:48289405-48289424 None:intergenic 50.0%
CCAAAGTGTGGGATCCACAT+GGG + chr5_4:48289612-48289631 None:intergenic 50.0%
TCCAAAGTGTGGGATCCACA+TGG + chr5_4:48289613-48289632 None:intergenic 50.0%
GTGGGTCTCACCACTTTATG+TGG + chr5_4:48289644-48289663 None:intergenic 50.0%
ATAAAGTGGTGAGACCCACG+TGG - chr5_4:48289645-48289664 Msa0855160:CDS 50.0%
CGTTAAGGTGGATGGCTAAG+TGG + chr5_4:48290352-48290371 None:intergenic 50.0%
TTGCAAGGTAGCTAGCGAGA+GGG + chr5_4:48290388-48290407 None:intergenic 50.0%
ATTGCAAGGTAGCTAGCGAG+AGG + chr5_4:48290389-48290408 None:intergenic 50.0%
CAGTCCACCATGTTCTTGCA+TGG - chr5_4:48290544-48290563 Msa0855160:intron 50.0%
AGGTCCATGCAAGAACATGG+TGG + chr5_4:48290551-48290570 None:intergenic 50.0%
CACAGGTCCATGCAAGAACA+TGG + chr5_4:48290554-48290573 None:intergenic 50.0%
TTAGCAATGTGGCTGAGCAC+AGG + chr5_4:48290571-48290590 None:intergenic 50.0%
AGCAGCACCCAACTTACAGT+AGG - chr5_4:48290674-48290693 Msa0855160:intron 50.0%
!!! GCAGGTTGCTTTTAGGACCA+AGG - chr5_4:48290818-48290837 Msa0855160:intron 50.0%
GATGTTTGGGTGGAACACCT+TGG + chr5_4:48290838-48290857 None:intergenic 50.0%
ACAAGTGGATCATCGGGGTT+GGG + chr5_4:48291199-48291218 None:intergenic 50.0%
AACAAGTGGATCATCGGGGT+TGG + chr5_4:48291200-48291219 None:intergenic 50.0%
CAGGAACAAGTGGATCATCG+GGG + chr5_4:48291204-48291223 None:intergenic 50.0%
CACACATGTACAAGACCGAC+AGG - chr5_4:48291230-48291249 Msa0855160:intron 50.0%
! CTGGACACAGAAGTATGCCA+TGG - chr5_4:48291279-48291298 Msa0855160:intron 50.0%
TAAGTGGGGTCGGCATCAAA+TGG + chr5_4:48291651-48291670 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_4:48291661-48291680 None:intergenic 50.0%
ACCGCCTTATCCCACTAAGT+GGG + chr5_4:48291666-48291685 None:intergenic 50.0%
CTGCACTGCATGAAGTTGGG+GGG + chr5_4:48286530-48286549 None:intergenic 55.0%
CCTGCACTGCATGAAGTTGG+GGG + chr5_4:48286531-48286550 None:intergenic 55.0%
TCCCTCCGTCCTGCAATAGA+TGG - chr5_4:48286920-48286939 Msa0855160:intron 55.0%
GCCATCTATTGCAGGACGGA+GGG + chr5_4:48286924-48286943 None:intergenic 55.0%
GACACAAGTTTGACTCCCCC+GGG + chr5_4:48287616-48287635 None:intergenic 55.0%
GGACACAAGTTTGACTCCCC+CGG + chr5_4:48287617-48287636 None:intergenic 55.0%
! GACCGTCTTTTGCAGCTCGA+AGG + chr5_4:48287638-48287657 None:intergenic 55.0%
CGGTCTTGCCACTACACCAT+TGG - chr5_4:48287653-48287672 Msa0855160:intron 55.0%
TATGAGACAGCGGGAAGCCA+TGG + chr5_4:48287801-48287820 None:intergenic 55.0%
TGGAACATGTCCTCAGCCAC+AGG + chr5_4:48288234-48288253 None:intergenic 55.0%
TGGCTGAGGACATGTTCCAC+TGG - chr5_4:48288235-48288254 Msa0855160:intron 55.0%
! CCATGATTGTGGCTTGCCAG+TGG + chr5_4:48288254-48288273 None:intergenic 55.0%
CCACTGGCAAGCCACAATCA+TGG - chr5_4:48288251-48288270 Msa0855160:intron 55.0%
GCAAGCCACAATCATGGGAC+CGG - chr5_4:48288257-48288276 Msa0855160:intron 55.0%
ATCAGCCGGTCCCATGATTG+TGG + chr5_4:48288265-48288284 None:intergenic 55.0%
CCGGCTGATAGCCCATATAC+TGG - chr5_4:48288276-48288295 Msa0855160:intron 55.0%
GGCTTGAAGGGATAGTCAGG+AGG + chr5_4:48288330-48288349 None:intergenic 55.0%
GGTGGCTTGAAGGGATAGTC+AGG + chr5_4:48288333-48288352 None:intergenic 55.0%
CAGGATCCAAACCAGCCAAC+TGG + chr5_4:48288826-48288845 None:intergenic 55.0%
! GGGTGGCGGCGTAAATTTGA+AGG - chr5_4:48288983-48289002 Msa0855160:intron 55.0%
!!! GGAGCATTTTGGGGCAGTTG+TGG - chr5_4:48289149-48289168 Msa0855160:intron 55.0%
!!! GCATTTTGGGGCAGTTGTGG+TGG - chr5_4:48289152-48289171 Msa0855160:intron 55.0%
CCCATGTGGATCCCACACTT+TGG - chr5_4:48289609-48289628 Msa0855160:CDS 55.0%
TGCAAGGTAGCTAGCGAGAG+GGG + chr5_4:48290387-48290406 None:intergenic 55.0%
CAAGTGGATCATCGGGGTTG+GGG + chr5_4:48291198-48291217 None:intergenic 55.0%
GGCTTCATACTTGGCCCTGT+CGG + chr5_4:48291248-48291267 None:intergenic 55.0%
GCGAGCTGTGGCTTCATACT+TGG + chr5_4:48291257-48291276 None:intergenic 55.0%
TTGATGCCGACCCCACTTAG+TGG - chr5_4:48291652-48291671 Msa0855160:five_prime_UTR 55.0%
TGATGCCGACCCCACTTAGT+GGG - chr5_4:48291653-48291672 Msa0855160:five_prime_UTR 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_4:48291659-48291678 Msa0855160:five_prime_UTR 55.0%
CCGCCTTATCCCACTAAGTG+GGG + chr5_4:48291665-48291684 None:intergenic 55.0%
CCCCACTTAGTGGGATAAGG+CGG - chr5_4:48291662-48291681 Msa0855160:five_prime_UTR 55.0%
CACCGCCTTATCCCACTAAG+TGG + chr5_4:48291667-48291686 None:intergenic 55.0%
TTCTTCCACGCTTCCGACCC+AGG - chr5_4:48286303-48286322 Msa0855160:intron 60.0%
ACAAACCTGGGTCGGAAGCG+TGG + chr5_4:48286311-48286330 None:intergenic 60.0%
CCCCCAACTTCATGCAGTGC+AGG - chr5_4:48286528-48286547 Msa0855160:three_prime_UTR 60.0%
GGCCATCTATTGCAGGACGG+AGG + chr5_4:48286925-48286944 None:intergenic 60.0%
GGTTTCCCCCCATCCCTATG+TGG - chr5_4:48289225-48289244 Msa0855160:intron 60.0%
ATGAAGCCACAGCTCGCAGC+TGG - chr5_4:48291260-48291279 Msa0855160:intron 60.0%
CTGTGTCCAGCTGCGAGCTG+TGG + chr5_4:48291269-48291288 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48286144 48291821 48286144 ID=Msa0855160;Name=Msa0855160
chr5_4 mRNA 48286144 48291821 48286144 ID=Msa0855160-mRNA-1;Parent=Msa0855160;Name=Msa0855160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=192|1|1|1|0.6|0.33|6|449|148
chr5_4 exon 48286144 48286257 48286144 ID=Msa0855160-mRNA-1:exon:15253;Parent=Msa0855160-mRNA-1
chr5_4 exon 48286324 48286802 48286324 ID=Msa0855160-mRNA-1:exon:15252;Parent=Msa0855160-mRNA-1
chr5_4 exon 48287039 48287143 48287039 ID=Msa0855160-mRNA-1:exon:15251;Parent=Msa0855160-mRNA-1
chr5_4 exon 48289609 48289736 48289609 ID=Msa0855160-mRNA-1:exon:15250;Parent=Msa0855160-mRNA-1
chr5_4 exon 48291416 48291496 48291416 ID=Msa0855160-mRNA-1:exon:15249;Parent=Msa0855160-mRNA-1
chr5_4 exon 48291641 48291821 48291641 ID=Msa0855160-mRNA-1:exon:15248;Parent=Msa0855160-mRNA-1
chr5_4 five_prime_UTR 48291641 48291821 48291641 ID=Msa0855160-mRNA-1:five_prime_utr;Parent=Msa0855160-mRNA-1
chr5_4 five_prime_UTR 48291486 48291496 48291486 ID=Msa0855160-mRNA-1:five_prime_utr;Parent=Msa0855160-mRNA-1
chr5_4 CDS 48291416 48291485 48291416 ID=Msa0855160-mRNA-1:cds;Parent=Msa0855160-mRNA-1
chr5_4 CDS 48289609 48289736 48289609 ID=Msa0855160-mRNA-1:cds;Parent=Msa0855160-mRNA-1
chr5_4 CDS 48287039 48287143 48287039 ID=Msa0855160-mRNA-1:cds;Parent=Msa0855160-mRNA-1
chr5_4 CDS 48286659 48286802 48286659 ID=Msa0855160-mRNA-1:cds;Parent=Msa0855160-mRNA-1
chr5_4 three_prime_UTR 48286324 48286658 48286324 ID=Msa0855160-mRNA-1:three_prime_utr;Parent=Msa0855160-mRNA-1
chr5_4 three_prime_UTR 48286144 48286257 48286144 ID=Msa0855160-mRNA-1:three_prime_utr;Parent=Msa0855160-mRNA-1
Gene Sequence

>Msa0855160

ATGGCGTCGAAACGAATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCCCCAACTTCATGCAGTGCAGGTCCTGTGGCTGAGGACATGTTCCACTGGCAAGCCACAATCATGGGACCGGCTGATAGCCCATATACTGGTGGTGTGTTCCTGGTTTCAATTCATTTTCCTCCTGACTATCCCTTCAAGCCACCAAAGGTTGCTTTTAGGACCAAGGTGTTCCACCCAAACATCAACAGTAATGGCAGTATATGTCTCGACATTCTGAAGGAACAGTGGAGCCCAGCTTTAACCATTTCCAAGGTCCTTTTGTCAATTTGCTCGTTGTTGACGGACCCCAACCCCGATGATCCACTTGTTCCTGAAATTGCACACATGTACAAGACCGACAGGGCCAAGTATGAAGCCACAGCTCGCAGCTGGACACAGAAGTATGCCATGGGATGA
Protein sequence

>Msa0855160

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYTGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*