Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425340 | XP_003626001.1 | 99.307 | 433 | 3 | 0 | 1 | 433 | 1 | 433 | 0.0 | 893 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425340 | sp|Q8VZL6|SWC4_ARATH | 69.841 | 441 | 120 | 6 | 2 | 433 | 5 | 441 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425340 | G7KTN9 | 99.307 | 433 | 3 | 0 | 1 | 433 | 1 | 433 | 0.0 | 893 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1425340 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1425340 | -0.828771 | 7.471559e-55 | -8.615850e-47 |
| Msa0005000 | Msa1425340 | -0.803971 | 2.702632e-49 | -8.615850e-47 |
| Msa0032370 | Msa1425340 | 0.803348 | 3.638196e-49 | -8.615850e-47 |
| Msa0036370 | Msa1425340 | 0.806778 | 6.973221e-50 | -8.615850e-47 |
| Msa0081230 | Msa1425340 | 0.806705 | 7.225449e-50 | -8.615850e-47 |
| Msa0090030 | Msa1425340 | 0.802832 | 4.652543e-49 | -8.615850e-47 |
| Msa0098390 | Msa1425340 | -0.806185 | 9.301593e-50 | -8.615850e-47 |
| Msa1344850 | Msa1425340 | 0.804147 | 2.483710e-49 | -8.615850e-47 |
| Msa1350690 | Msa1425340 | 0.810309 | 1.229132e-50 | -8.615850e-47 |
| Msa1362510 | Msa1425340 | 0.835771 | 1.382165e-56 | -8.615850e-47 |
| Msa1364060 | Msa1425340 | 0.807161 | 5.786866e-50 | -8.615850e-47 |
| Msa1383350 | Msa1425340 | 0.802279 | 6.049144e-49 | -8.615850e-47 |
| Msa1393800 | Msa1425340 | 0.807075 | 6.033584e-50 | -8.615850e-47 |
| Msa1397050 | Msa1425340 | 0.800063 | 1.717772e-48 | -8.615850e-47 |
| Msa1397940 | Msa1425340 | 0.811612 | 6.416845e-51 | -8.615850e-47 |
| Msa1398860 | Msa1425340 | 0.837533 | 4.915705e-57 | -8.615850e-47 |
| Msa1416390 | Msa1425340 | 0.807728 | 4.387562e-50 | -8.615850e-47 |
| Msa1422840 | Msa1425340 | 0.802985 | 4.325092e-49 | -8.615850e-47 |
| Msa1425340 | Msa1426920 | 0.802933 | 4.434823e-49 | -8.615850e-47 |
| Msa1425340 | Msa1438450 | 0.836112 | 1.132481e-56 | -8.615850e-47 |
| Msa1425340 | Msa1442220 | -0.812541 | 4.025014e-51 | -8.615850e-47 |
| Msa1425340 | Msa1452470 | 0.814037 | 1.888754e-51 | -8.615850e-47 |
| Msa0609970 | Msa1425340 | 0.820784 | 5.711135e-53 | -8.615850e-47 |
| Msa0618200 | Msa1425340 | -0.800295 | 1.540813e-48 | -8.615850e-47 |
| Msa0638690 | Msa1425340 | 0.809118 | 2.216061e-50 | -8.615850e-47 |
| Msa0639120 | Msa1425340 | 0.820399 | 7.002088e-53 | -8.615850e-47 |
| Msa0657460 | Msa1425340 | -0.805578 | 1.247833e-49 | -8.615850e-47 |
| Msa0692110 | Msa1425340 | 0.801809 | 7.555695e-49 | -8.615850e-47 |
| Msa0707390 | Msa1425340 | 0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0711490 | Msa1425340 | 0.808037 | 3.769934e-50 | -8.615850e-47 |
| Msa0756930 | Msa1425340 | 0.810136 | 1.339450e-50 | -8.615850e-47 |
| Msa0784620 | Msa1425340 | 0.804312 | 2.295325e-49 | -8.615850e-47 |
| Msa0820530 | Msa1425340 | -0.809202 | 2.125693e-50 | -8.615850e-47 |
| Msa0824730 | Msa1425340 | 0.827880 | 1.225137e-54 | -8.615850e-47 |
| Msa0127040 | Msa1425340 | 0.801068 | 1.072152e-48 | -8.615850e-47 |
| Msa0143080 | Msa1425340 | 0.800532 | 1.379110e-48 | -8.615850e-47 |
| Msa0219250 | Msa1425340 | -0.810332 | 1.214951e-50 | -8.615850e-47 |
| Msa0224150 | Msa1425340 | 0.812986 | 3.216909e-51 | -8.615850e-47 |
| Msa0227310 | Msa1425340 | -0.806262 | 8.957578e-50 | -8.615850e-47 |
| Msa0236980 | Msa1425340 | 0.805709 | 1.170785e-49 | -8.615850e-47 |
| Msa1235630 | Msa1425340 | 0.809029 | 2.315676e-50 | -8.615850e-47 |
| Msa1236070 | Msa1425340 | -0.801675 | 8.052522e-49 | -8.615850e-47 |
| Msa1246530 | Msa1425340 | -0.813375 | 2.642580e-51 | -8.615850e-47 |
| Msa1296300 | Msa1425340 | 0.808772 | 2.628068e-50 | -8.615850e-47 |
| Msa1300860 | Msa1425340 | 0.810612 | 1.057259e-50 | -8.615850e-47 |
| Msa1327760 | Msa1425340 | 0.800278 | 1.553137e-48 | -8.615850e-47 |
| Msa1330890 | Msa1425340 | -0.801530 | 8.622506e-49 | -8.615850e-47 |
| Msa0377530 | Msa1425340 | 0.805005 | 1.645111e-49 | -8.615850e-47 |
| Msa0404700 | Msa1425340 | 0.803588 | 3.245545e-49 | -8.615850e-47 |
| Msa0419640 | Msa1425340 | -0.816764 | 4.673586e-52 | -8.615850e-47 |
| Msa0426330 | Msa1425340 | 0.803771 | 2.973261e-49 | -8.615850e-47 |
| Msa0426810 | Msa1425340 | 0.819826 | 9.471893e-53 | -8.615850e-47 |
| Msa0462540 | Msa1425340 | 0.803672 | 3.117700e-49 | -8.615850e-47 |
| Msa0469910 | Msa1425340 | -0.834881 | 2.318559e-56 | -8.615850e-47 |
| Msa0993530 | Msa1425340 | 0.820308 | 7.345502e-53 | -8.615850e-47 |
| Msa1040890 | Msa1425340 | 0.814078 | 1.850476e-51 | -8.615850e-47 |
| Msa0239940 | Msa1425340 | 0.805409 | 1.353786e-49 | -8.615850e-47 |
| Msa0258880 | Msa1425340 | -0.806699 | 7.247610e-50 | -8.615850e-47 |
| Msa0266210 | Msa1425340 | 0.812686 | 3.741986e-51 | -8.615850e-47 |
| Msa0275400 | Msa1425340 | -0.810971 | 8.841423e-51 | -8.615850e-47 |
| Msa0287670 | Msa1425340 | 0.809305 | 2.020900e-50 | -8.615850e-47 |
| Msa0308220 | Msa1425340 | 0.807000 | 6.259889e-50 | -8.615850e-47 |
| Msa0328210 | Msa1425340 | 0.813031 | 3.144708e-51 | -8.615850e-47 |
| Msa1113590 | Msa1425340 | 0.803094 | 4.106427e-49 | -8.615850e-47 |
| Msa1126120 | Msa1425340 | -0.808831 | 2.552959e-50 | -8.615850e-47 |
| Msa1130210 | Msa1425340 | -0.807822 | 4.189360e-50 | -8.615850e-47 |
| Msa1181170 | Msa1425340 | -0.821613 | 3.678624e-53 | -8.615850e-47 |
| Msa1182640 | Msa1425340 | 0.810462 | 1.139091e-50 | -8.615850e-47 |
| Msa1201830 | Msa1425340 | 0.810586 | 1.071114e-50 | -8.615850e-47 |
| Msa1211050 | Msa1425340 | -0.809153 | 2.177842e-50 | -8.615850e-47 |
| Msa0505060 | Msa1425340 | 0.827787 | 1.289666e-54 | -8.615850e-47 |
| Msa0517490 | Msa1425340 | 0.809051 | 2.289937e-50 | -8.615850e-47 |
| Msa0534410 | Msa1425340 | 0.800517 | 1.388866e-48 | -8.615850e-47 |
| Msa0554180 | Msa1425340 | -0.802583 | 5.237857e-49 | -8.615850e-47 |
| Msa0560470 | Msa1425340 | 0.827986 | 1.155399e-54 | -8.615850e-47 |
| Msa0565620 | Msa1425340 | -0.816216 | 6.199041e-52 | -8.615850e-47 |
| Msa0590650 | Msa1425340 | 0.808178 | 3.519131e-50 | -8.615850e-47 |
| Msa0591540 | Msa1425340 | 0.808257 | 3.385277e-50 | -8.615850e-47 |
| Msa0600610 | Msa1425340 | 0.803514 | 3.362403e-49 | -8.615850e-47 |
| Msa0869010 | Msa1425340 | 0.803325 | 3.678895e-49 | -8.615850e-47 |
| Msa0908170 | Msa1425340 | 0.802238 | 6.167574e-49 | -8.615850e-47 |
| Msa0959010 | Msa1425340 | 0.825277 | 5.117853e-54 | -8.615850e-47 |
| Msa0959840 | Msa1425340 | 0.801491 | 8.780835e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425340 | MtrunA17_Chr7g0270251 | 99.307 | 433 | 3 | 0 | 1 | 433 | 1 | 433 | 0.0 | 893 |
| Msa1425340 | MtrunA17_Chr1g0194351 | 69.340 | 424 | 102 | 4 | 1 | 412 | 1 | 408 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425340 | AT2G47210.3 | 69.841 | 441 | 120 | 6 | 2 | 433 | 5 | 441 | 0.0 | 607 |
| Msa1425340 | AT2G47210.1 | 69.841 | 441 | 120 | 6 | 2 | 433 | 5 | 441 | 0.0 | 607 |
| Msa1425340 | AT2G47210.2 | 69.841 | 441 | 120 | 6 | 2 | 433 | 5 | 441 | 0.0 | 607 |
Find 136 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAAGCATCATATTTAAT+TGG | 0.150139 | tig0025836:-893 | Msa1425340:three_prime_UTR |
| TATACCAATATACCTGTTTC+TGG | 0.156332 | tig0025836:+1713 | Msa1425340:intergenic |
| AATATCCTTCGCGTCCATTT+AGG | 0.193541 | tig0025836:+5438 | Msa1425340:intergenic |
| GAGAAATTGAGAGGGAAAAT+TGG | 0.199779 | tig0025836:-5529 | Msa1425340:five_prime_UTR |
| ATTCCCGATTCGTTGAATTT+TGG | 0.213340 | tig0025836:-1291 | Msa1425340:CDS |
| CTTGCCAGGGCTGCATCTTC+CGG | 0.253582 | tig0025836:-3853 | Msa1425340:CDS |
| TCATATTTAATTGGGTTAAA+TGG | 0.256296 | tig0025836:-884 | Msa1425340:three_prime_UTR |
| TTTCTCTTGTTGTCTTGTTT+GGG | 0.260220 | tig0025836:+3595 | Msa1425340:intergenic |
| ATTTCTTGTGAAACATTATA+TGG | 0.283878 | tig0025836:+3650 | Msa1425340:intergenic |
| TCAATTCAATTCAATTCAAT+TGG | 0.292621 | tig0025836:+5487 | Msa1425340:intergenic |
| CCTGCCATTTGAGCGAGTTT+TGG | 0.294499 | tig0025836:-848 | Msa1425340:three_prime_UTR |
| TCGGACTGTAGAGGAGTTAA+AGG | 0.299488 | tig0025836:-4092 | Msa1425340:CDS |
| TGAAGGAGGTAAGGTGTTAG+AGG | 0.312654 | tig0025836:+622 | Msa1425340:intergenic |
| TTTGACTTCACCTTAATGAT+AGG | 0.315672 | tig0025836:+3814 | Msa1425340:intergenic |
| TTGCCAGGGCTGCATCTTCC+GGG | 0.316334 | tig0025836:-3852 | Msa1425340:CDS |
| ATATCCTTCGCGTCCATTTA+GGG | 0.321840 | tig0025836:+5439 | Msa1425340:intergenic |
| AGGCGAAAGGGTTGGCAAAA+AGG | 0.324610 | tig0025836:-1164 | Msa1425340:CDS |
| TGTTCCTATGAAACCCTAAA+TGG | 0.331803 | tig0025836:-5452 | Msa1425340:exon |
| CAATTCAATTCAATTCAATT+GGG | 0.345159 | tig0025836:+5488 | Msa1425340:intergenic |
| TGCAACACATCCTATCATTA+AGG | 0.347399 | tig0025836:-3824 | Msa1425340:intron |
| ATGGACGCGAAGGATATTCT+TGG | 0.347443 | tig0025836:-5433 | Msa1425340:CDS |
| CGAGTTACGGATGGCTTCTA+AGG | 0.352316 | tig0025836:-3431 | Msa1425340:intron |
| ATCATCTTTACGAGCAGAAT+TGG | 0.368961 | tig0025836:+4940 | Msa1425340:intergenic |
| GCGTCCATTTAGGGTTTCAT+AGG | 0.370836 | tig0025836:+5448 | Msa1425340:intergenic |
| CACAAGAAATGGAGCGAAAA+CGG | 0.373448 | tig0025836:-3637 | Msa1425340:CDS |
| ATATAATGTTTCACAAGAAA+TGG | 0.380297 | tig0025836:-3648 | Msa1425340:CDS |
| TTTAGCTACCTTGTTGTACT+TGG | 0.384441 | tig0025836:+4769 | Msa1425340:intergenic |
| TCCCTGTCATGTAGTGTTGC+GGG | 0.387723 | tig0025836:-3884 | Msa1425340:intron |
| TGACAAATTTAAGCTCTTAC+CGG | 0.389119 | tig0025836:+936 | Msa1425340:intergenic |
| GTTAAGCATCATATTTAATT+GGG | 0.389369 | tig0025836:-892 | Msa1425340:three_prime_UTR |
| AATTGAGAAGCATCAATTGA+TGG | 0.396902 | tig0025836:+5182 | Msa1425340:intergenic |
| ACCTCCAAAATTCAACGAAT+CGG | 0.405812 | tig0025836:+1287 | Msa1425340:intergenic |
| CTTGTTGTCTTGTTTGGGAG+AGG | 0.408483 | tig0025836:+3600 | Msa1425340:intergenic |
| TTTCCGACCTTTGGTGTGCC+TGG | 0.419064 | tig0025836:+1421 | Msa1425340:intergenic |
| TTCAGCTTCGTGTATATTTG+AGG | 0.419331 | tig0025836:-2146 | Msa1425340:intron |
| TCCTCTACAGTCCGAGATGA+TGG | 0.419890 | tig0025836:+4100 | Msa1425340:intergenic |
| AGCAAACATTGCAAGATCTC+GGG | 0.423802 | tig0025836:-2053 | Msa1425340:CDS |
| TGCGGGCTATATTACTTGCC+AGG | 0.427836 | tig0025836:-3867 | Msa1425340:CDS |
| ATGATCTTCATCTTTACCAT+TGG | 0.430773 | tig0025836:-4922 | Msa1425340:CDS |
| TGATCTTCATCTTTACCATT+GGG | 0.431644 | tig0025836:-4921 | Msa1425340:intron |
| TAAGGTGTTAGAGGAGATGA+AGG | 0.435766 | tig0025836:+631 | Msa1425340:intergenic |
| ACAAGAAATGGAGCGAAAAC+GGG | 0.436669 | tig0025836:-3636 | Msa1425340:CDS |
| GGTTACTGAACAGTCTCAAT+TGG | 0.436817 | tig0025836:-2731 | Msa1425340:CDS |
| GTCAATGGTGTTCTACCTAC+TGG | 0.449074 | tig0025836:-4806 | Msa1425340:CDS |
| ATGGCTGAATCTCCAGAAAC+AGG | 0.450187 | tig0025836:-1725 | Msa1425340:intron |
| GCAGAAGGCACAACCATTTG+TGG | 0.456839 | tig0025836:+2628 | Msa1425340:intergenic |
| TAATTCATTTGTCTCCTCCT+TGG | 0.460992 | tig0025836:+4177 | Msa1425340:intergenic |
| AACTGTTGTTTCAGGCGAAA+GGG | 0.463388 | tig0025836:-1176 | Msa1425340:intron |
| CCTCCAAAATTCAACGAATC+GGG | 0.465713 | tig0025836:+1288 | Msa1425340:intergenic |
| CAAGCTTCAAACTCAACTGC+TGG | 0.466195 | tig0025836:-2099 | Msa1425340:CDS |
| CCAAAACTCGCTCAAATGGC+AGG | 0.470110 | tig0025836:+848 | Msa1425340:intergenic |
| CTGGAGTTCGGACTATCAAA+CGG | 0.471345 | tig0025836:-2080 | Msa1425340:CDS |
| CCTCGGATCTTTAATTCCTC+CGG | 0.474183 | tig0025836:-955 | Msa1425340:exon |
| GACATATGCACTCGAGCAAA+TGG | 0.476593 | tig0025836:-2124 | Msa1425340:CDS |
| GAATGTGCAACTTCCACAAA+TGG | 0.479963 | tig0025836:-2641 | Msa1425340:CDS |
| TGGAGCAGATGAAGGAGGTA+AGG | 0.480661 | tig0025836:+613 | Msa1425340:intergenic |
| GAGCAAACATTGCAAGATCT+CGG | 0.481522 | tig0025836:-2054 | Msa1425340:CDS |
| TCCACAAAGCTCCGATGCTT+CGG | 0.481635 | tig0025836:+5558 | Msa1425340:intergenic |
| TAAACCAAAACTCGCTCAAA+TGG | 0.482767 | tig0025836:+844 | Msa1425340:intergenic |
| GCATCAATTGATGGCATAAG+AGG | 0.485257 | tig0025836:+5191 | Msa1425340:intergenic |
| TAAAAGACCTAGAAAACAAA+AGG | 0.485836 | tig0025836:-978 | Msa1425340:CDS |
| GCGAAAACGGGCACTGTCCA+TGG | 0.488734 | tig0025836:-3624 | Msa1425340:CDS |
| TTTCAGGTTCGAGTAGTCAA+TGG | 0.491064 | tig0025836:-4821 | Msa1425340:intron |
| ACCTAGAAAACAAAAGGCCT+CGG | 0.494235 | tig0025836:-972 | Msa1425340:CDS |
| TACTCTAGCTTCTCTTCGCA+TGG | 0.494649 | tig0025836:-2593 | Msa1425340:intron |
| GTCCCCGGAAGATGCAGCCC+TGG | 0.501841 | tig0025836:+3849 | Msa1425340:intergenic |
| TTGAATTGAATTGAATTGAA+AGG | 0.502198 | tig0025836:-5483 | Msa1425340:five_prime_UTR |
| AAACTGTTGTTTCAGGCGAA+AGG | 0.502998 | tig0025836:-1177 | Msa1425340:intron |
| ATAGTACAACGCCGAAGCAT+CGG | 0.508177 | tig0025836:-5569 | Msa1425340:five_prime_UTR |
| ACAAGAGAAAAGAGATGAAG+AGG | 0.510309 | tig0025836:-3582 | Msa1425340:intron |
| CAAACTCAACTGCTGGAGTT+CGG | 0.511526 | tig0025836:-2092 | Msa1425340:CDS |
| ATCACGGAAAGATGAACCTT+CGG | 0.512389 | tig0025836:+1462 | Msa1425340:intergenic |
| GAATCTTCAAATGACAAGGT+TGG | 0.514330 | tig0025836:+792 | Msa1425340:intergenic |
| ACCTCGCGTGAAATGCCATC+AGG | 0.515608 | tig0025836:+5337 | Msa1425340:intergenic |
| GTCCCTGTCATGTAGTGTTG+CGG | 0.515697 | tig0025836:-3885 | Msa1425340:intron |
| GCCGAAGCATCGGAGCTTTG+TGG | 0.516017 | tig0025836:-5559 | Msa1425340:five_prime_UTR |
| ACTTTATTTGTATAGGGGCA+TGG | 0.516874 | tig0025836:-1022 | Msa1425340:intron |
| AAAGCCTCCTACTCACGAAA+AGG | 0.530448 | tig0025836:-5153 | Msa1425340:intron |
| AATTCAATTCAATTCAATTG+GGG | 0.531181 | tig0025836:+5489 | Msa1425340:intergenic |
| GAGAGGGAAAATTGGAGCGG+AGG | 0.541807 | tig0025836:-5521 | Msa1425340:five_prime_UTR |
| TGGAGTTCGGACTATCAAAC+GGG | 0.542516 | tig0025836:-2079 | Msa1425340:CDS |
| TCTTTCCGTGATGGATCCTA+CGG | 0.547451 | tig0025836:-1451 | Msa1425340:CDS |
| TTAAAGGATCGATATTATAG+TGG | 0.547811 | tig0025836:-4076 | Msa1425340:intron |
| GAAGGTTCATCTTTCCGTGA+TGG | 0.548182 | tig0025836:-1460 | Msa1425340:CDS |
| GTTGCAGAGAGGGCTGTCCC+TGG | 0.559311 | tig0025836:-2682 | Msa1425340:CDS |
| TGTGGAAGTTGCACATTCGA+AGG | 0.559456 | tig0025836:+2646 | Msa1425340:intergenic |
| TATCAGCTATAACAACAAAA+CGG | 0.560637 | tig0025836:+4128 | Msa1425340:intergenic |
| GTTGTTTCAGGCGAAAGGGT+TGG | 0.562497 | tig0025836:-1172 | Msa1425340:intron |
| TCATGACATGACTGCAAACA+TGG | 0.562839 | tig0025836:-754 | Msa1425340:three_prime_UTR |
| TTTCTCTGAGATTCTTTGGG+AGG | 0.563303 | tig0025836:+5361 | Msa1425340:intergenic |
| TAGGTTTATGCACTTACTGG+TGG | 0.564499 | tig0025836:-5221 | Msa1425340:CDS |
| CTTAGAAGCCATCCGTAACT+CGG | 0.565328 | tig0025836:+3432 | Msa1425340:intergenic |
| TTAGTAATTTAAAATACAAG+TGG | 0.569049 | tig0025836:+679 | Msa1425340:intergenic |
| TGCCAGGGCTGCATCTTCCG+GGG | 0.572929 | tig0025836:-3851 | Msa1425340:CDS |
| GTAGAAGCATTATCTGCAGA+AGG | 0.577553 | tig0025836:+2613 | Msa1425340:intergenic |
| TCCAGGTAAATTTGAAACCG+AGG | 0.579026 | tig0025836:-1804 | Msa1425340:intron |
| CCAGGTAAATTTGAAACCGA+GGG | 0.579215 | tig0025836:-1803 | Msa1425340:intron |
| GGAACAGTTGAGAAATTGAG+AGG | 0.581395 | tig0025836:-5538 | Msa1425340:five_prime_UTR |
| CTGATAGGTTCCCATCATCT+CGG | 0.582805 | tig0025836:-4111 | Msa1425340:CDS |
| TCTTGTTTGGGAGAGGACCA+TGG | 0.585148 | tig0025836:+3607 | Msa1425340:intergenic |
| TTACGAGCAGAATTGGTGAA+AGG | 0.585208 | tig0025836:+4947 | Msa1425340:intergenic |
| ACCTGATGGCATTTCACGCG+AGG | 0.587818 | tig0025836:-5338 | Msa1425340:intron |
| AAGAATTGCCGAGTTACGGA+TGG | 0.589866 | tig0025836:-3440 | Msa1425340:CDS |
| GCGGGCTATATTACTTGCCA+GGG | 0.590495 | tig0025836:-3866 | Msa1425340:CDS |
| CCTCTACAGTCCGAGATGAT+GGG | 0.592270 | tig0025836:+4101 | Msa1425340:intergenic |
| AGGGTTGGAGCAGATGAAGG+AGG | 0.596010 | tig0025836:+608 | Msa1425340:intergenic |
| AAATTTGTCACAAACGACAC+TGG | 0.598087 | tig0025836:-923 | Msa1425340:three_prime_UTR |
| TGTGCCTGGTGTTTCACCGT+AGG | 0.598536 | tig0025836:+1435 | Msa1425340:intergenic |
| GGATCCTACGGTGAAACACC+AGG | 0.600080 | tig0025836:-1439 | Msa1425340:CDS |
| GTGGCAGGTGCAATATAAAG+AGG | 0.604781 | tig0025836:-1485 | Msa1425340:intron |
| GAAACCCTAAATGGACGCGA+AGG | 0.605606 | tig0025836:-5443 | Msa1425340:exon |
| CCCATCATCTCGGACTGTAG+AGG | 0.606561 | tig0025836:-4101 | Msa1425340:CDS |
| TGATGCAGAAGTTGCAGAGA+GGG | 0.607610 | tig0025836:-2692 | Msa1425340:CDS |
| GAAGGAGATACAGTTTCACC+AGG | 0.611694 | tig0025836:+2664 | Msa1425340:intergenic |
| TGTTTGCAGTCATGTCATGA+AGG | 0.613943 | tig0025836:+757 | Msa1425340:intergenic |
| GAACAGTTGAGAAATTGAGA+GGG | 0.622457 | tig0025836:-5537 | Msa1425340:five_prime_UTR |
| CAAAACTCGCTCAAATGGCA+GGG | 0.623183 | tig0025836:+849 | Msa1425340:intergenic |
| GCAAAAGAATAGTCTCCAGT+AGG | 0.625902 | tig0025836:+4791 | Msa1425340:intergenic |
| TCAATTGATGGCATAAGAGG+TGG | 0.628674 | tig0025836:+5194 | Msa1425340:intergenic |
| AATTATTTGATTTGTGTGAG+AGG | 0.630139 | tig0025836:-4159 | Msa1425340:CDS |
| ATTGAGAGGGAAAATTGGAG+CGG | 0.634070 | tig0025836:-5524 | Msa1425340:five_prime_UTR |
| CAAATTTAAGCTCTTACCGG+AGG | 0.645111 | tig0025836:+939 | Msa1425340:intergenic |
| GAATCTCAGAGAAAACCTGA+TGG | 0.650054 | tig0025836:-5352 | Msa1425340:CDS |
| GCAAACATTGCAAGATCTCG+GGG | 0.655130 | tig0025836:-2052 | Msa1425340:intron |
| AGGATGTGTTGCAATGTCCC+CGG | 0.656289 | tig0025836:+3834 | Msa1425340:intergenic |
| AGAAGAATCTTCAAATGACA+AGG | 0.659923 | tig0025836:+788 | Msa1425340:intergenic |
| TGAAACACCAGGCACACCAA+AGG | 0.660161 | tig0025836:-1428 | Msa1425340:intron |
| CCGGAGGAATTAAAGATCCG+AGG | 0.665879 | tig0025836:+955 | Msa1425340:intergenic |
| GTGCAATATAAAGAGGCCGA+AGG | 0.666909 | tig0025836:-1478 | Msa1425340:CDS |
| ATCTACCTAGATGTGGACCA+AGG | 0.676327 | tig0025836:-4194 | Msa1425340:intron |
| CATCATCAAATACACAGACG+AGG | 0.685360 | tig0025836:-4654 | Msa1425340:CDS |
| TAAGAAGAGAAATACTAACA+TGG | 0.691447 | tig0025836:-1744 | Msa1425340:CDS |
| CTGATGCAGAAGTTGCAGAG+AGG | 0.692246 | tig0025836:-2693 | Msa1425340:CDS |
| TTTCACCGTAGGATCCATCA+CGG | 0.706383 | tig0025836:+1446 | Msa1425340:intergenic |
| AAGGAGATACAGTTTCACCA+GGG | 0.739390 | tig0025836:+2665 | Msa1425340:intergenic |
| TACCTAGATGTGGACCAAGG+AGG | 0.740553 | tig0025836:-4191 | Msa1425340:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGAATTGTATTATTTTT+AGG | - | tig0025836:963-982 | Msa1425340:exon | 10.0% |
| !!! | TCAAATAATTTTTTTTAATG+AGG | - | tig0025836:3972-3991 | Msa1425340:intron | 10.0% |
| !!! | CAAATAATTTTTTTTAATGA+GGG | - | tig0025836:3973-3992 | Msa1425340:intron | 10.0% |
| !!! | AAATAATTTTTTTTAATGAG+GGG | - | tig0025836:3974-3993 | Msa1425340:intron | 10.0% |
| !! | TAATTAAATCAAAGAAATTT+GGG | + | tig0025836:4683-4702 | Msa1425340:intergenic | 10.0% |
| !!! | ATTAATTTTACATTTACTTT+TGG | - | tig0025836:5119-5138 | Msa1425340:intron | 10.0% |
| !! | ACATAAAATAAATTTCAGTT+CGG | + | tig0025836:1688-1707 | Msa1425340:intergenic | 15.0% |
| !! | TATATGATATATTGTACAAT+GGG | + | tig0025836:1848-1867 | Msa1425340:intergenic | 15.0% |
| !! | ATATATGATATATTGTACAA+TGG | + | tig0025836:1849-1868 | Msa1425340:intergenic | 15.0% |
| !!! | GTATTATTTTTTTTCTTTGA+AGG | + | tig0025836:2653-2672 | Msa1425340:intergenic | 15.0% |
| !! | AATAAGATATTAAATGACTA+AGG | + | tig0025836:3201-3220 | Msa1425340:intergenic | 15.0% |
| !!! | ATTGATTTTATACATTTTTC+AGG | - | tig0025836:3451-3470 | Msa1425340:CDS | 15.0% |
| !! | AATTAAATCAAAGAAATTTG+GGG | + | tig0025836:4682-4701 | Msa1425340:intergenic | 15.0% |
| !! | GTAATTAAATCAAAGAAATT+TGG | + | tig0025836:4684-4703 | Msa1425340:intergenic | 15.0% |
| !! | TTCTAAATTTCTATAAAGTA+AGG | - | tig0025836:4968-4987 | Msa1425340:CDS | 15.0% |
| !! | TCTAAATTTCTATAAAGTAA+GGG | - | tig0025836:4969-4988 | Msa1425340:intron | 15.0% |
| !! | TATGTTTAATGATAAATAGA+TGG | + | tig0025836:5000-5019 | Msa1425340:intergenic | 15.0% |
| !! | TAATTAGACAAAAAAAATTG+TGG | + | tig0025836:5084-5103 | Msa1425340:intergenic | 15.0% |
| !! | ATGTAAAATTAATCAATTGA+CGG | + | tig0025836:5112-5131 | Msa1425340:intergenic | 15.0% |
| !! | GTAATAGTACATTATTAAAA+TGG | + | tig0025836:5146-5165 | Msa1425340:intergenic | 15.0% |
| !!! | TTTTAATAATGTACTATTAC+TGG | - | tig0025836:5146-5165 | Msa1425340:intron | 15.0% |
| !!! | TTAGTAATTTAAAATACAAG+TGG | + | tig0025836:5527-5546 | Msa1425340:intergenic | 15.0% |
| !! | AATTCAATTCAATTCAATTG+GGG | + | tig0025836:717-736 | Msa1425340:intergenic | 20.0% |
| !! | CAATTCAATTCAATTCAATT+GGG | + | tig0025836:718-737 | Msa1425340:intergenic | 20.0% |
| !! | TCAATTCAATTCAATTCAAT+TGG | + | tig0025836:719-738 | Msa1425340:intergenic | 20.0% |
| !! | TTGAATTGAATTGAATTGAA+AGG | - | tig0025836:720-739 | Msa1425340:three_prime_UTR | 20.0% |
| !!! | TTTTTATTATCAAGAGAAGA+TGG | + | tig0025836:815-834 | Msa1425340:intergenic | 20.0% |
| !! | AAAGAATGAATAAAGTGAAT+CGG | + | tig0025836:922-941 | Msa1425340:intergenic | 20.0% |
| !! | TATTAAGATGATTATCCAAA+CGG | - | tig0025836:1197-1216 | Msa1425340:intron | 20.0% |
| !!! | TACAGTTTTTTGGAAATTTA+TGG | - | tig0025836:1619-1638 | Msa1425340:intron | 20.0% |
| !! | GCAATCAATTTATATATCAA+TGG | - | tig0025836:1784-1803 | Msa1425340:CDS | 20.0% |
| !! | ATATGATATATTGTACAATG+GGG | + | tig0025836:1847-1866 | Msa1425340:intergenic | 20.0% |
| !! | ATTTCTTGTGAAACATTATA+TGG | + | tig0025836:2556-2575 | Msa1425340:intergenic | 20.0% |
| !! | ATATAATGTTTCACAAGAAA+TGG | - | tig0025836:2555-2574 | Msa1425340:intron | 20.0% |
| !!! | CTTATATTGTTTTATTTTGC+AGG | - | tig0025836:2724-2743 | Msa1425340:CDS | 20.0% |
| !! | TTAAAAAGTGACACTTAAAA+AGG | + | tig0025836:3104-3123 | Msa1425340:intergenic | 20.0% |
| !! | TTAAAAAGTGACAGTTAAAT+TGG | - | tig0025836:3344-3363 | Msa1425340:intron | 20.0% |
| !! | TAAAAAGTGACAGTTAAATT+GGG | - | tig0025836:3345-3364 | Msa1425340:intron | 20.0% |
| !! | ATTTGATATTTCGCTATTTA+GGG | + | tig0025836:3699-3718 | Msa1425340:intergenic | 20.0% |
| !! | AATTTGATATTTCGCTATTT+AGG | + | tig0025836:3700-3719 | Msa1425340:intergenic | 20.0% |
| !! | ATTAAGAAAGATGGTTAATT+TGG | + | tig0025836:4262-4281 | Msa1425340:intergenic | 20.0% |
| !! | ATTAAATCAAAGAAATTTGG+GGG | + | tig0025836:4681-4700 | Msa1425340:intergenic | 20.0% |
| !! | TTTATAGAAATTTAGAAAGC+AGG | + | tig0025836:4965-4984 | Msa1425340:intergenic | 20.0% |
| !! | TGTAAAATTAATCAATTGAC+GGG | + | tig0025836:5111-5130 | Msa1425340:intergenic | 20.0% |
| !! | TGTTAAGCATCATATTTAAT+TGG | - | tig0025836:5310-5329 | Msa1425340:intron | 20.0% |
| !! | GTTAAGCATCATATTTAATT+GGG | - | tig0025836:5311-5330 | Msa1425340:intron | 20.0% |
| !! | TCATATTTAATTGGGTTAAA+TGG | - | tig0025836:5319-5338 | Msa1425340:intron | 20.0% |
| !! | GAATTGAATTGAAAGGTTTT+TGG | - | tig0025836:727-746 | Msa1425340:three_prime_UTR | 25.0% |
| ! | CTTATGAAAATAAGCTGAAA+AGG | + | tig0025836:1147-1166 | Msa1425340:intergenic | 25.0% |
| ! | ATTAAGATGATTATCCAAAC+GGG | - | tig0025836:1198-1217 | Msa1425340:intron | 25.0% |
| !!! | ATTATGTTTTTCAGGTTACT+TGG | - | tig0025836:1224-1243 | Msa1425340:intron | 25.0% |
| ! | CCAAAAATATAGCAATGAAT+AGG | + | tig0025836:1487-1506 | Msa1425340:intergenic | 25.0% |
| !! | CCTATTCATTGCTATATTTT+TGG | - | tig0025836:1484-1503 | Msa1425340:intron | 25.0% |
| !!! | TGTCTAATTGTACAGTTTTT+TGG | - | tig0025836:1609-1628 | Msa1425340:intron | 25.0% |
| ! | AAGTTTAGACATGAAAAATG+AGG | - | tig0025836:1753-1772 | Msa1425340:CDS | 25.0% |
| ! | AGTTTAGACATGAAAAATGA+GGG | - | tig0025836:1754-1773 | Msa1425340:CDS | 25.0% |
| ! | AATTTATATATCAATGGACC+TGG | - | tig0025836:1790-1809 | Msa1425340:CDS | 25.0% |
| ! | TTAACAAATGCAGTTAAAAC+AGG | + | tig0025836:1878-1897 | Msa1425340:intergenic | 25.0% |
| ! | ATATTAATGCATTGAACACT+TGG | + | tig0025836:1974-1993 | Msa1425340:intergenic | 25.0% |
| !!! | AATTATTTGATTTGTGTGAG+AGG | - | tig0025836:2044-2063 | Msa1425340:intron | 25.0% |
| ! | TATCAGCTATAACAACAAAA+CGG | + | tig0025836:2078-2097 | Msa1425340:intergenic | 25.0% |
| ! | TTAAAGGATCGATATTATAG+TGG | - | tig0025836:2127-2146 | Msa1425340:CDS | 25.0% |
| ! | AGAAATCAGAATTAGATCAT+AGG | + | tig0025836:2870-2889 | Msa1425340:intergenic | 25.0% |
| !!! | TAATATTCAAAGTGATGGAT+AGG | + | tig0025836:2915-2934 | Msa1425340:intergenic | 25.0% |
| ! | TATCCATCACTTTGAATATT+AGG | - | tig0025836:2914-2933 | Msa1425340:intron | 25.0% |
| ! | ATCCATCACTTTGAATATTA+GGG | - | tig0025836:2915-2934 | Msa1425340:intron | 25.0% |
| ! | TCTCCACAATAAATAACTAT+GGG | - | tig0025836:3234-3253 | Msa1425340:intron | 25.0% |
| ! | TTACCCATAGTTATTTATTG+TGG | + | tig0025836:3240-3259 | Msa1425340:intergenic | 25.0% |
| ! | TAAATAACTATGGGTAATGT+TGG | - | tig0025836:3243-3262 | Msa1425340:intron | 25.0% |
| !!! | TATTTAACTGTCACTTTCAA+AGG | + | tig0025836:3295-3314 | Msa1425340:intergenic | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+AGG | - | tig0025836:3294-3313 | Msa1425340:intron | 25.0% |
| ! | ATGTATAAAATCAATATCCC+AGG | + | tig0025836:3446-3465 | Msa1425340:intergenic | 25.0% |
| ! | TACAATTTCAGAACACAAAA+TGG | + | tig0025836:3656-3675 | Msa1425340:intergenic | 25.0% |
| !!! | AATTTTGAAGATCAGAATTC+TGG | + | tig0025836:3927-3946 | Msa1425340:intergenic | 25.0% |
| ! | GATTCTACTATCTAATTCAT+GGG | + | tig0025836:4286-4305 | Msa1425340:intergenic | 25.0% |
| ! | AGATTCTACTATCTAATTCA+TGG | + | tig0025836:4287-4306 | Msa1425340:intergenic | 25.0% |
| ! | GATAGTAGAATCTTATATTG+AGG | - | tig0025836:4294-4313 | Msa1425340:intron | 25.0% |
| ! | CTCGTTACAAAAATTTCATT+TGG | + | tig0025836:4336-4355 | Msa1425340:intergenic | 25.0% |
| ! | TAAGAAGAGAAATACTAACA+TGG | - | tig0025836:4459-4478 | Msa1425340:intron | 25.0% |
| !!! | TTCACTTGTTAGAATTTTCA+TGG | - | tig0025836:4580-4599 | Msa1425340:intron | 25.0% |
| !!! | TCACTTGTTAGAATTTTCAT+GGG | - | tig0025836:4581-4600 | Msa1425340:intron | 25.0% |
| ! | TAAACAATCATACATTAGAC+AGG | + | tig0025836:4618-4637 | Msa1425340:intergenic | 25.0% |
| ! | TTAAATCAAAGAAATTTGGG+GGG | + | tig0025836:4680-4699 | Msa1425340:intergenic | 25.0% |
| ! | AATAATGTACTATTACTGGT+TGG | - | tig0025836:5150-5169 | Msa1425340:intron | 25.0% |
| ! | TAAAAGACCTAGAAAACAAA+AGG | - | tig0025836:5225-5244 | Msa1425340:intron | 25.0% |
| !!! | TTTTAGGTTTATGCACTTAC+TGG | - | tig0025836:979-998 | Msa1425340:CDS | 30.0% |
| !! | AATTGAGAAGCATCAATTGA+TGG | + | tig0025836:1024-1043 | Msa1425340:intergenic | 30.0% |
| AATAAGCTGAAAAGGACTTA+TGG | + | tig0025836:1139-1158 | Msa1425340:intergenic | 30.0% | |
| TTAAGATGATTATCCAAACG+GGG | - | tig0025836:1199-1218 | Msa1425340:intron | 30.0% | |
| AAAAACATAATAACCCCGTT+TGG | + | tig0025836:1215-1234 | Msa1425340:intergenic | 30.0% | |
| ATGATCTTCATCTTTACCAT+TGG | - | tig0025836:1281-1300 | Msa1425340:intron | 30.0% | |
| TGATCTTCATCTTTACCATT+GGG | - | tig0025836:1282-1301 | Msa1425340:intron | 30.0% | |
| ! | TATGTATCAAGTTGTGATTG+TGG | - | tig0025836:1708-1727 | Msa1425340:intron | 30.0% |
| ! | ATGTATCAAGTTGTGATTGT+GGG | - | tig0025836:1709-1728 | Msa1425340:intron | 30.0% |
| CTTACAATAGAAGTCAATGA+AGG | + | tig0025836:1736-1755 | Msa1425340:intergenic | 30.0% | |
| GTTTAGACATGAAAAATGAG+GGG | - | tig0025836:1755-1774 | Msa1425340:CDS | 30.0% | |
| TAGGTAGATAAAGCAGAATA+AGG | + | tig0025836:1998-2017 | Msa1425340:intergenic | 30.0% | |
| !!! | GTTTTGTTGTTATAGCTGAT+AGG | - | tig0025836:2077-2096 | Msa1425340:CDS | 30.0% |
| GAGTTAAATGACATGAATTG+TGG | + | tig0025836:2188-2207 | Msa1425340:intergenic | 30.0% | |
| ACCTTTCAATTCTGATGATA+TGG | - | tig0025836:2244-2263 | Msa1425340:intron | 30.0% | |
| TCCATATCATCAGAATTGAA+AGG | + | tig0025836:2248-2267 | Msa1425340:intergenic | 30.0% | |
| ! | TTTGACTTCACCTTAATGAT+AGG | + | tig0025836:2392-2411 | Msa1425340:intergenic | 30.0% |
| !! | TTTCTCTTGTTGTCTTGTTT+GGG | + | tig0025836:2611-2630 | Msa1425340:intergenic | 30.0% |
| !! | TTTTCTCTTGTTGTCTTGTT+TGG | + | tig0025836:2612-2631 | Msa1425340:intergenic | 30.0% |
| !! | TACCAATACACCATTGATTT+AGG | - | tig0025836:2815-2834 | Msa1425340:intron | 30.0% |
| GATAACAACTCCTAAATCAA+TGG | + | tig0025836:2828-2847 | Msa1425340:intergenic | 30.0% | |
| TTCCCTAATATTCAAAGTGA+TGG | + | tig0025836:2920-2939 | Msa1425340:intergenic | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | + | tig0025836:3099-3118 | Msa1425340:intergenic | 30.0% | |
| GTAACAATTATTGAGTGTCT+TGG | + | tig0025836:3140-3159 | Msa1425340:intergenic | 30.0% | |
| CTCTCCACAATAAATAACTA+TGG | - | tig0025836:3233-3252 | Msa1425340:intron | 30.0% | |
| !!! | CACTTTTTAAGTGTCACTTT+TGG | + | tig0025836:3334-3353 | Msa1425340:intergenic | 30.0% |
| ATTGGGAGTAATTACCAATT+TGG | - | tig0025836:3362-3381 | Msa1425340:intron | 30.0% | |
| TTGGGAGTAATTACCAATTT+GGG | - | tig0025836:3363-3382 | Msa1425340:intron | 30.0% | |
| CATAAAAAGTTAAGGTAGTC+GGG | + | tig0025836:4182-4201 | Msa1425340:intergenic | 30.0% | |
| GCATAAAAAGTTAAGGTAGT+CGG | + | tig0025836:4183-4202 | Msa1425340:intergenic | 30.0% | |
| TTCATGGGTATTAAGAAAGA+TGG | + | tig0025836:4271-4290 | Msa1425340:intergenic | 30.0% | |
| TTGAGTTTGACCATATGTTT+GGG | - | tig0025836:4356-4375 | Msa1425340:intron | 30.0% | |
| TATACCAATATACCTGTTTC+TGG | + | tig0025836:4493-4512 | Msa1425340:intergenic | 30.0% | |
| CATTCATGTTTATAACCAGA+TGG | - | tig0025836:4553-4572 | Msa1425340:intron | 30.0% | |
| !! | ATTACTTGTTGTGAAATACG+TGG | - | tig0025836:4699-4718 | Msa1425340:intron | 30.0% |
| AAATATGAATTTCCGACCTT+TGG | + | tig0025836:4794-4813 | Msa1425340:intergenic | 30.0% | |
| ! | AGTTTCCCTTCTATTGTTTT+AGG | - | tig0025836:4829-4848 | Msa1425340:intron | 30.0% |
| !! | ATGCATAAAACTGTTGTTTC+AGG | - | tig0025836:5019-5038 | Msa1425340:intron | 30.0% |
| ! | TCGGGAACTTTATTTGTATA+GGG | - | tig0025836:5175-5194 | Msa1425340:CDS | 30.0% |
| TGACAAATTTAAGCTCTTAC+CGG | + | tig0025836:5270-5289 | Msa1425340:intergenic | 30.0% | |
| AGAAGAATCTTCAAATGACA+AGG | + | tig0025836:5418-5437 | Msa1425340:intergenic | 30.0% | |
| GAACAGTTGAGAAATTGAGA+GGG | - | tig0025836:666-685 | Msa1425340:three_prime_UTR | 35.0% | |
| GAGAAATTGAGAGGGAAAAT+TGG | - | tig0025836:674-693 | Msa1425340:three_prime_UTR | 35.0% | |
| TGTTCCTATGAAACCCTAAA+TGG | - | tig0025836:751-770 | Msa1425340:three_prime_UTR | 35.0% | |
| !!! | GGTTTTCTCTGAGATTCTTT+GGG | + | tig0025836:848-867 | Msa1425340:intergenic | 35.0% |
| !!! | AGGTTTTCTCTGAGATTCTT+TGG | + | tig0025836:849-868 | Msa1425340:intergenic | 35.0% |
| ! | ACGGGGTTATTATGTTTTTC+AGG | - | tig0025836:1216-1235 | Msa1425340:intron | 35.0% |
| !!! | TTTTTCAGGTTACTTGGCAA+TGG | - | tig0025836:1230-1249 | Msa1425340:intron | 35.0% |
| ATCATCTTTACGAGCAGAAT+TGG | + | tig0025836:1266-1285 | Msa1425340:intergenic | 35.0% | |
| !!! | TTATGTGTCGCTTCTTTTTC+AGG | - | tig0025836:1366-1385 | Msa1425340:intron | 35.0% |
| ! | TTCTTTTGCCAAGTACAACA+AGG | - | tig0025836:1426-1445 | Msa1425340:intron | 35.0% |
| ! | TTTAGCTACCTTGTTGTACT+TGG | + | tig0025836:1437-1456 | Msa1425340:intergenic | 35.0% |
| ! | AAAGTATTTGACAGATCCTG+TGG | - | tig0025836:1579-1598 | Msa1425340:intron | 35.0% |
| AAGTATTTGACAGATCCTGT+GGG | - | tig0025836:1580-1599 | Msa1425340:intron | 35.0% | |
| AATTAGACATGATTACCCAC+AGG | + | tig0025836:1598-1617 | Msa1425340:intergenic | 35.0% | |
| ATGCATTGAACACTTGGTAA+AGG | + | tig0025836:1968-1987 | Msa1425340:intergenic | 35.0% | |
| TAATTCATTTGTCTCCTCCT+TGG | + | tig0025836:2029-2048 | Msa1425340:intergenic | 35.0% | |
| TGCAACACATCCTATCATTA+AGG | - | tig0025836:2379-2398 | Msa1425340:intron | 35.0% | |
| TTACTATCAACACATGGCAA+TGG | + | tig0025836:2507-2526 | Msa1425340:intergenic | 35.0% | |
| AACAGGTTACTATCAACACA+TGG | + | tig0025836:2513-2532 | Msa1425340:intergenic | 35.0% | |
| CTACATTGAAAAGAGAGAAC+AGG | + | tig0025836:2530-2549 | Msa1425340:intergenic | 35.0% | |
| ! | CTGTTCTCTCTTTTCAATGT+AGG | - | tig0025836:2528-2547 | Msa1425340:intron | 35.0% |
| ACAAGAGAAAAGAGATGAAG+AGG | - | tig0025836:2621-2640 | Msa1425340:CDS | 35.0% | |
| ACTTCATACATTTCTGCCAT+CGG | - | tig0025836:2671-2690 | Msa1425340:CDS | 35.0% | |
| TTATTATGACGGTAAACCGA+TGG | + | tig0025836:2690-2709 | Msa1425340:intergenic | 35.0% | |
| CCAGACGTCATTTATTATGA+CGG | + | tig0025836:2701-2720 | Msa1425340:intergenic | 35.0% | |
| CAAAAAGAATTGCCGAGTTA+CGG | - | tig0025836:2759-2778 | Msa1425340:intron | 35.0% | |
| CTCCTAAATCAATGGTGTAT+TGG | + | tig0025836:2820-2839 | Msa1425340:intergenic | 35.0% | |
| GGAGTTGTTATCATGATTCA+AGG | - | tig0025836:2836-2855 | Msa1425340:intron | 35.0% | |
| TGGGAGTAATTACCAATTTG+GGG | - | tig0025836:3364-3383 | Msa1425340:intron | 35.0% | |
| ! | CAAATTTTGTTGCCCCAAAT+TGG | + | tig0025836:3379-3398 | Msa1425340:intergenic | 35.0% |
| ! | ATTTGGGGCAACAAAATTTG+TGG | - | tig0025836:3379-3398 | Msa1425340:intron | 35.0% |
| !! | GTTCTGAAATTGTAAGTGTC+TGG | - | tig0025836:3662-3681 | Msa1425340:intron | 35.0% |
| ATTGTAAGTGTCTGGCAATT+TGG | - | tig0025836:3670-3689 | Msa1425340:intron | 35.0% | |
| TTGTAAGTGTCTGGCAATTT+GGG | - | tig0025836:3671-3690 | Msa1425340:intron | 35.0% | |
| GACTGTCGTTAGACAATTTA+GGG | + | tig0025836:3727-3746 | Msa1425340:intergenic | 35.0% | |
| TGACTGTCGTTAGACAATTT+AGG | + | tig0025836:3728-3747 | Msa1425340:intergenic | 35.0% | |
| ATCATGTTAAGCAGAACACT+AGG | - | tig0025836:3791-3810 | Msa1425340:intron | 35.0% | |
| ! | AAAACTTCGTTTTGTAGCAC+TGG | - | tig0025836:3895-3914 | Msa1425340:intron | 35.0% |
| TTCAGCTTCGTGTATATTTG+AGG | - | tig0025836:4057-4076 | Msa1425340:intron | 35.0% | |
| GCAAGCTGCATAAAAAGTTA+AGG | + | tig0025836:4190-4209 | Msa1425340:intergenic | 35.0% | |
| GTTGAGTTTGACCATATGTT+TGG | - | tig0025836:4355-4374 | Msa1425340:intron | 35.0% | |
| ATCTCCAGAAACAGGTATAT+TGG | - | tig0025836:4486-4505 | Msa1425340:intron | 35.0% | |
| TAACAAGTGAAATCACCATC+TGG | + | tig0025836:4571-4590 | Msa1425340:intergenic | 35.0% | |
| GAATCAGCAACATTCTATAC+TGG | - | tig0025836:4640-4659 | Msa1425340:CDS | 35.0% | |
| ACGAGCCTAAAACAATAGAA+GGG | + | tig0025836:4837-4856 | Msa1425340:intergenic | 35.0% | |
| !! | ATTCCCGATTCGTTGAATTT+TGG | - | tig0025836:4912-4931 | Msa1425340:intron | 35.0% |
| ACCTCCAAAATTCAACGAAT+CGG | + | tig0025836:4919-4938 | Msa1425340:intergenic | 35.0% | |
| ! | CTCGGGAACTTTATTTGTAT+AGG | - | tig0025836:5174-5193 | Msa1425340:CDS | 35.0% |
| ! | CGGGAACTTTATTTGTATAG+GGG | - | tig0025836:5176-5195 | Msa1425340:CDS | 35.0% |
| ! | ACTTTATTTGTATAGGGGCA+TGG | - | tig0025836:5181-5200 | Msa1425340:CDS | 35.0% |
| AAATTTGTCACAAACGACAC+TGG | - | tig0025836:5280-5299 | Msa1425340:intron | 35.0% | |
| TAAACCAAAACTCGCTCAAA+TGG | + | tig0025836:5362-5381 | Msa1425340:intergenic | 35.0% | |
| GAATCTTCAAATGACAAGGT+TGG | + | tig0025836:5414-5433 | Msa1425340:intergenic | 35.0% | |
| GGAACAGTTGAGAAATTGAG+AGG | - | tig0025836:665-684 | Msa1425340:three_prime_UTR | 40.0% | |
| ATTGAGAGGGAAAATTGGAG+CGG | - | tig0025836:679-698 | Msa1425340:three_prime_UTR | 40.0% | |
| ATATCCTTCGCGTCCATTTA+GGG | + | tig0025836:767-786 | Msa1425340:intergenic | 40.0% | |
| AATATCCTTCGCGTCCATTT+AGG | + | tig0025836:768-787 | Msa1425340:intergenic | 40.0% | |
| !! | TTTCTCTGAGATTCTTTGGG+AGG | + | tig0025836:845-864 | Msa1425340:intergenic | 40.0% |
| GAATCTCAGAGAAAACCTGA+TGG | - | tig0025836:851-870 | Msa1425340:three_prime_UTR | 40.0% | |
| TAGGTTTATGCACTTACTGG+TGG | - | tig0025836:982-1001 | Msa1425340:CDS | 40.0% | |
| ! | TCAATTGATGGCATAAGAGG+TGG | + | tig0025836:1012-1031 | Msa1425340:intergenic | 40.0% |
| ! | GCATCAATTGATGGCATAAG+AGG | + | tig0025836:1015-1034 | Msa1425340:intergenic | 40.0% |
| ! | GTTCAAACCTTTTCGTGAGT+AGG | + | tig0025836:1060-1079 | Msa1425340:intergenic | 40.0% |
| TTACGAGCAGAATTGGTGAA+AGG | + | tig0025836:1259-1278 | Msa1425340:intergenic | 40.0% | |
| !! | TTTCAGGTTCGAGTAGTCAA+TGG | - | tig0025836:1382-1401 | Msa1425340:intron | 40.0% |
| GCAAAAGAATAGTCTCCAGT+AGG | + | tig0025836:1415-1434 | Msa1425340:intergenic | 40.0% | |
| CATCATCAAATACACAGACG+AGG | - | tig0025836:1549-1568 | Msa1425340:intron | 40.0% | |
| AATGGACCTGGTTATTTGCA+AGG | - | tig0025836:1802-1821 | Msa1425340:CDS | 40.0% | |
| CTGCTTTATCTACCTAGATG+TGG | - | tig0025836:2002-2021 | Msa1425340:intron | 40.0% | |
| CACAAGAAATGGAGCGAAAA+CGG | - | tig0025836:2566-2585 | Msa1425340:intron | 40.0% | |
| ACAAGAAATGGAGCGAAAAC+GGG | - | tig0025836:2567-2586 | Msa1425340:intron | 40.0% | |
| CCGTCATAATAAATGACGTC+TGG | - | tig0025836:2698-2717 | Msa1425340:CDS | 40.0% | |
| GAAAATGTGCACAGCATACT+AGG | + | tig0025836:2948-2967 | Msa1425340:intergenic | 40.0% | |
| ! | TGTGCACATTTTCGTTTGCA+TGG | - | tig0025836:2955-2974 | Msa1425340:intron | 40.0% |
| ! | GTGCACATTTTCGTTTGCAT+GGG | - | tig0025836:2956-2975 | Msa1425340:intron | 40.0% |
| TGACACTTAAAAAGGAACGG+AGG | + | tig0025836:3096-3115 | Msa1425340:intergenic | 40.0% | |
| GGTTACTGAACAGTCTCAAT+TGG | - | tig0025836:3472-3491 | Msa1425340:intron | 40.0% | |
| AAGGAGATACAGTTTCACCA+GGG | + | tig0025836:3541-3560 | Msa1425340:intergenic | 40.0% | |
| GAATGTGCAACTTCCACAAA+TGG | - | tig0025836:3562-3581 | Msa1425340:intron | 40.0% | |
| !! | GTAGAAGCATTATCTGCAGA+AGG | + | tig0025836:3593-3612 | Msa1425340:intergenic | 40.0% |
| GAGCAAACATTGCAAGATCT+CGG | - | tig0025836:4149-4168 | Msa1425340:CDS | 40.0% | |
| AGCAAACATTGCAAGATCTC+GGG | - | tig0025836:4150-4169 | Msa1425340:CDS | 40.0% | |
| GCATCATGAACCCAAACATA+TGG | + | tig0025836:4369-4388 | Msa1425340:intergenic | 40.0% | |
| ATGATGCATTCTGTGATTCC+AGG | - | tig0025836:4382-4401 | Msa1425340:intron | 40.0% | |
| ! | TCCAGGTAAATTTGAAACCG+AGG | - | tig0025836:4399-4418 | Msa1425340:intron | 40.0% |
| ! | CCAGGTAAATTTGAAACCGA+GGG | - | tig0025836:4400-4419 | Msa1425340:intron | 40.0% |
| ! | TCTGCACAAACAGCTTTTGT+TGG | + | tig0025836:4428-4447 | Msa1425340:intergenic | 40.0% |
| ATCACGGAAAGATGAACCTT+CGG | + | tig0025836:4744-4763 | Msa1425340:intergenic | 40.0% | |
| CACGAGCCTAAAACAATAGA+AGG | + | tig0025836:4838-4857 | Msa1425340:intergenic | 40.0% | |
| !!! | CTTCTATTGTTTTAGGCTCG+TGG | - | tig0025836:4836-4855 | Msa1425340:intron | 40.0% |
| !!! | ATTGTTTTAGGCTCGTGGTT+TGG | - | tig0025836:4841-4860 | Msa1425340:intron | 40.0% |
| CTACTGACACATTTGTTTCG+TGG | - | tig0025836:4867-4886 | Msa1425340:intron | 40.0% | |
| TGACACATTTGTTTCGTGGT+GGG | - | tig0025836:4871-4890 | Msa1425340:intron | 40.0% | |
| CCTCCAAAATTCAACGAATC+GGG | + | tig0025836:4918-4937 | Msa1425340:intergenic | 40.0% | |
| !! | AAACTGTTGTTTCAGGCGAA+AGG | - | tig0025836:5026-5045 | Msa1425340:intron | 40.0% |
| !! | AACTGTTGTTTCAGGCGAAA+GGG | - | tig0025836:5027-5046 | Msa1425340:intron | 40.0% |
| CAAAAAGGACCAAAAACGCA+AGG | - | tig0025836:5054-5073 | Msa1425340:intron | 40.0% | |
| !! | GTACTATTACTGGTTGGTCT+CGG | - | tig0025836:5156-5175 | Msa1425340:CDS | 40.0% |
| !! | TACTATTACTGGTTGGTCTC+GGG | - | tig0025836:5157-5176 | Msa1425340:CDS | 40.0% |
| ACCTAGAAAACAAAAGGCCT+CGG | - | tig0025836:5231-5250 | Msa1425340:intron | 40.0% | |
| CAAATTTAAGCTCTTACCGG+AGG | + | tig0025836:5267-5286 | Msa1425340:intergenic | 40.0% | |
| TGTTTGCAGTCATGTCATGA+AGG | + | tig0025836:5449-5468 | Msa1425340:intergenic | 40.0% | |
| TCATGACATGACTGCAAACA+TGG | - | tig0025836:5449-5468 | Msa1425340:exon | 40.0% | |
| ! | TAAGGTGTTAGAGGAGATGA+AGG | + | tig0025836:5575-5594 | Msa1425340:intergenic | 40.0% |
| ATAGTACAACGCCGAAGCAT+CGG | - | tig0025836:634-653 | Msa1425340:three_prime_UTR | 45.0% | |
| ! | GCGTCCATTTAGGGTTTCAT+AGG | + | tig0025836:758-777 | Msa1425340:intergenic | 45.0% |
| ATGGACGCGAAGGATATTCT+TGG | - | tig0025836:770-789 | Msa1425340:three_prime_UTR | 45.0% | |
| AAAGCCTCCTACTCACGAAA+AGG | - | tig0025836:1050-1069 | Msa1425340:intron | 45.0% | |
| ! | CAAACCTTTTCGTGAGTAGG+AGG | + | tig0025836:1057-1076 | Msa1425340:intergenic | 45.0% |
| TGACGTAAGCACTTGTGAAG+AGG | - | tig0025836:1102-1121 | Msa1425340:intron | 45.0% | |
| GACGTAAGCACTTGTGAAGA+GGG | - | tig0025836:1103-1122 | Msa1425340:intron | 45.0% | |
| GCATATTGTGACTGACCCAA+TGG | + | tig0025836:1300-1319 | Msa1425340:intergenic | 45.0% | |
| GTCAATGGTGTTCTACCTAC+TGG | - | tig0025836:1397-1416 | Msa1425340:intron | 45.0% | |
| AGAGGTCCTTGCAAATAACC+AGG | + | tig0025836:1811-1830 | Msa1425340:intergenic | 45.0% | |
| ATCTACCTAGATGTGGACCA+AGG | - | tig0025836:2009-2028 | Msa1425340:intron | 45.0% | |
| CTGATAGGTTCCCATCATCT+CGG | - | tig0025836:2092-2111 | Msa1425340:CDS | 45.0% | |
| TCGGACTGTAGAGGAGTTAA+AGG | - | tig0025836:2111-2130 | Msa1425340:CDS | 45.0% | |
| CAACACATGGCAATGGCTTA+AGG | + | tig0025836:2500-2519 | Msa1425340:intergenic | 45.0% | |
| !! | CTTGTTGTCTTGTTTGGGAG+AGG | + | tig0025836:2606-2625 | Msa1425340:intergenic | 45.0% |
| AAGAATTGCCGAGTTACGGA+TGG | - | tig0025836:2763-2782 | Msa1425340:intron | 45.0% | |
| CTTAGAAGCCATCCGTAACT+CGG | + | tig0025836:2774-2793 | Msa1425340:intergenic | 45.0% | |
| ! | CACATTTTCGTTTGCATGGG+AGG | - | tig0025836:2959-2978 | Msa1425340:intron | 45.0% |
| ATCTGTACTTGCACATGCCT+GGG | - | tig0025836:3426-3445 | Msa1425340:intron | 45.0% | |
| TGATGCAGAAGTTGCAGAGA+GGG | - | tig0025836:3511-3530 | Msa1425340:intron | 45.0% | |
| GAAGGAGATACAGTTTCACC+AGG | + | tig0025836:3542-3561 | Msa1425340:intergenic | 45.0% | |
| TGTGGAAGTTGCACATTCGA+AGG | + | tig0025836:3560-3579 | Msa1425340:intergenic | 45.0% | |
| ! | TACTCTAGCTTCTCTTCGCA+TGG | - | tig0025836:3610-3629 | Msa1425340:CDS | 45.0% |
| CCTCTAACAGAGCTACTTGA+CGG | + | tig0025836:3762-3781 | Msa1425340:intergenic | 45.0% | |
| ! | ATCACTAGTCTCTAACCCGA+AGG | - | tig0025836:3839-3858 | Msa1425340:CDS | 45.0% |
| ACCCGAAGGAAATTTGTGCT+AGG | - | tig0025836:3853-3872 | Msa1425340:CDS | 45.0% | |
| CCCTAGCACAAATTTCCTTC+GGG | + | tig0025836:3857-3876 | Msa1425340:intergenic | 45.0% | |
| CCCGAAGGAAATTTGTGCTA+GGG | - | tig0025836:3854-3873 | Msa1425340:CDS | 45.0% | |
| GCCCTAGCACAAATTTCCTT+CGG | + | tig0025836:3858-3877 | Msa1425340:intergenic | 45.0% | |
| GACATATGCACTCGAGCAAA+TGG | - | tig0025836:4079-4098 | Msa1425340:CDS | 45.0% | |
| CAAGCTTCAAACTCAACTGC+TGG | - | tig0025836:4104-4123 | Msa1425340:CDS | 45.0% | |
| CAAACTCAACTGCTGGAGTT+CGG | - | tig0025836:4111-4130 | Msa1425340:CDS | 45.0% | |
| CTGGAGTTCGGACTATCAAA+CGG | - | tig0025836:4123-4142 | Msa1425340:CDS | 45.0% | |
| TGGAGTTCGGACTATCAAAC+GGG | - | tig0025836:4124-4143 | Msa1425340:CDS | 45.0% | |
| GCAAACATTGCAAGATCTCG+GGG | - | tig0025836:4151-4170 | Msa1425340:CDS | 45.0% | |
| CCCTCGGTTTCAAATTTACC+TGG | + | tig0025836:4403-4422 | Msa1425340:intergenic | 45.0% | |
| ! | ACAGCTTTTGTTGGAACCCT+CGG | + | tig0025836:4419-4438 | Msa1425340:intergenic | 45.0% |
| ATGGCTGAATCTCCAGAAAC+AGG | - | tig0025836:4478-4497 | Msa1425340:intron | 45.0% | |
| CAAAGAAATTTGGGGGGTGA+GGG | + | tig0025836:4674-4693 | Msa1425340:intergenic | 45.0% | |
| TCAAAGAAATTTGGGGGGTG+AGG | + | tig0025836:4675-4694 | Msa1425340:intergenic | 45.0% | |
| ! | CTTGTTGTGAAATACGTGGC+AGG | - | tig0025836:4703-4722 | Msa1425340:intron | 45.0% |
| GTGGCAGGTGCAATATAAAG+AGG | - | tig0025836:4718-4737 | Msa1425340:intron | 45.0% | |
| GTGCAATATAAAGAGGCCGA+AGG | - | tig0025836:4725-4744 | Msa1425340:intron | 45.0% | |
| GAAGGTTCATCTTTCCGTGA+TGG | - | tig0025836:4743-4762 | Msa1425340:intron | 45.0% | |
| !! | TCTTTCCGTGATGGATCCTA+CGG | - | tig0025836:4752-4771 | Msa1425340:intron | 45.0% |
| TTTCACCGTAGGATCCATCA+CGG | + | tig0025836:4760-4779 | Msa1425340:intergenic | 45.0% | |
| CTGACACATTTGTTTCGTGG+TGG | - | tig0025836:4870-4889 | Msa1425340:intron | 45.0% | |
| ! | TTTGTTTCGTGGTGGGAATC+AGG | - | tig0025836:4878-4897 | Msa1425340:intron | 45.0% |
| !! | CCCGATTCGTTGAATTTTGG+AGG | - | tig0025836:4915-4934 | Msa1425340:intron | 45.0% |
| ! | TGTGGTGTACCTTGCGTTTT+TGG | + | tig0025836:5066-5085 | Msa1425340:intergenic | 45.0% |
| ! | CTTTTATGAGCTGCTGTAGG+TGG | + | tig0025836:5211-5230 | Msa1425340:intergenic | 45.0% |
| ! | GGTCTTTTATGAGCTGCTGT+AGG | + | tig0025836:5214-5233 | Msa1425340:intergenic | 45.0% |
| !!! | TCCGAGGCCTTTTGTTTTCT+AGG | + | tig0025836:5235-5254 | Msa1425340:intergenic | 45.0% |
| CCTCGGATCTTTAATTCCTC+CGG | - | tig0025836:5248-5267 | Msa1425340:intron | 45.0% | |
| CAAAACTCGCTCAAATGGCA+GGG | + | tig0025836:5357-5376 | Msa1425340:intergenic | 45.0% | |
| ! | TGAAGGAGGTAAGGTGTTAG+AGG | + | tig0025836:5584-5603 | Msa1425340:intergenic | 45.0% |
| !! | AAATAAAATAAAAAATACAA+GGG | + | tig0025836:5387-5406 | Msa1425340:intergenic | 5.0% |
| !! | AAAATAAAATAAAAAATACA+AGG | + | tig0025836:5388-5407 | Msa1425340:intergenic | 5.0% |
| TCCACAAAGCTCCGATGCTT+CGG | + | tig0025836:648-667 | Msa1425340:intergenic | 50.0% | |
| GAAACCCTAAATGGACGCGA+AGG | - | tig0025836:760-779 | Msa1425340:three_prime_UTR | 50.0% | |
| TGGGGTGCAGTGTACAAAAG+AGG | + | tig0025836:1829-1848 | Msa1425340:intergenic | 50.0% | |
| TACCTAGATGTGGACCAAGG+AGG | - | tig0025836:2012-2031 | Msa1425340:intron | 50.0% | |
| CCTCTACAGTCCGAGATGAT+GGG | + | tig0025836:2105-2124 | Msa1425340:intergenic | 50.0% | |
| TCCTCTACAGTCCGAGATGA+TGG | + | tig0025836:2106-2125 | Msa1425340:intergenic | 50.0% | |
| GTCCCTGTCATGTAGTGTTG+CGG | - | tig0025836:2318-2337 | Msa1425340:intron | 50.0% | |
| TCCCTGTCATGTAGTGTTGC+GGG | - | tig0025836:2319-2338 | Msa1425340:intron | 50.0% | |
| ! | TGCGGGCTATATTACTTGCC+AGG | - | tig0025836:2336-2355 | Msa1425340:intron | 50.0% |
| ! | GCGGGCTATATTACTTGCCA+GGG | - | tig0025836:2337-2356 | Msa1425340:intron | 50.0% |
| AGGATGTGTTGCAATGTCCC+CGG | + | tig0025836:2372-2391 | Msa1425340:intergenic | 50.0% | |
| ! | TCTTGTTTGGGAGAGGACCA+TGG | + | tig0025836:2599-2618 | Msa1425340:intergenic | 50.0% |
| CGAGTTACGGATGGCTTCTA+AGG | - | tig0025836:2772-2791 | Msa1425340:intron | 50.0% | |
| GATCTGTACTTGCACATGCC+TGG | - | tig0025836:3425-3444 | Msa1425340:intron | 50.0% | |
| CTGATGCAGAAGTTGCAGAG+AGG | - | tig0025836:3510-3529 | Msa1425340:intron | 50.0% | |
| ! | GCAGAAGGCACAACCATTTG+TGG | + | tig0025836:3578-3597 | Msa1425340:intergenic | 50.0% |
| CTAACAGAGCTACTTGACGG+AGG | + | tig0025836:3759-3778 | Msa1425340:intergenic | 50.0% | |
| ! | CCGTCAAGTAGCTCTGTTAG+AGG | - | tig0025836:3759-3778 | Msa1425340:intron | 50.0% |
| ! | AGTAGCTCTGTTAGAGGTGC+TGG | - | tig0025836:3765-3784 | Msa1425340:intron | 50.0% |
| TGAAACACCAGGCACACCAA+AGG | - | tig0025836:4775-4794 | Msa1425340:intron | 50.0% | |
| ! | GTTGTTTCAGGCGAAAGGGT+TGG | - | tig0025836:5031-5050 | Msa1425340:intron | 50.0% |
| ! | AGGCGAAAGGGTTGGCAAAA+AGG | - | tig0025836:5039-5058 | Msa1425340:intron | 50.0% |
| CCGGAGGAATTAAAGATCCG+AGG | + | tig0025836:5251-5270 | Msa1425340:intergenic | 50.0% | |
| CCAAAACTCGCTCAAATGGC+AGG | + | tig0025836:5358-5377 | Msa1425340:intergenic | 50.0% | |
| !! | CCTGCCATTTGAGCGAGTTT+TGG | - | tig0025836:5355-5374 | Msa1425340:CDS | 50.0% |
| GAGAGGGAAAATTGGAGCGG+AGG | - | tig0025836:682-701 | Msa1425340:three_prime_UTR | 55.0% | |
| ACCTGATGGCATTTCACGCG+AGG | - | tig0025836:865-884 | Msa1425340:three_prime_UTR | 55.0% | |
| ACCTCGCGTGAAATGCCATC+AGG | + | tig0025836:869-888 | Msa1425340:intergenic | 55.0% | |
| CTCCTCCTTGGTCCACATCT+AGG | + | tig0025836:2017-2036 | Msa1425340:intergenic | 55.0% | |
| CCCATCATCTCGGACTGTAG+AGG | - | tig0025836:2102-2121 | Msa1425340:CDS | 55.0% | |
| GCCCGCAACACTACATGACA+GGG | + | tig0025836:2323-2342 | Msa1425340:intergenic | 55.0% | |
| AGCCCGCAACACTACATGAC+AGG | + | tig0025836:2324-2343 | Msa1425340:intergenic | 55.0% | |
| GGATCCTACGGTGAAACACC+AGG | - | tig0025836:4764-4783 | Msa1425340:intron | 55.0% | |
| TGTGCCTGGTGTTTCACCGT+AGG | + | tig0025836:4771-4790 | Msa1425340:intergenic | 55.0% | |
| ACACCAGGCACACCAAAGGT+CGG | - | tig0025836:4779-4798 | Msa1425340:CDS | 55.0% | |
| ! | TTTCCGACCTTTGGTGTGCC+TGG | + | tig0025836:4785-4804 | Msa1425340:intergenic | 55.0% |
| !! | GCCGAAGCATCGGAGCTTTG+TGG | - | tig0025836:644-663 | Msa1425340:three_prime_UTR | 60.0% |
| CTTGCCAGGGCTGCATCTTC+CGG | - | tig0025836:2350-2369 | Msa1425340:intron | 60.0% | |
| TTGCCAGGGCTGCATCTTCC+GGG | - | tig0025836:2351-2370 | Msa1425340:intron | 60.0% | |
| ! | GCGAAAACGGGCACTGTCCA+TGG | - | tig0025836:2579-2598 | Msa1425340:intron | 60.0% |
| TGCCAGGGCTGCATCTTCCG+GGG | - | tig0025836:2352-2371 | Msa1425340:intron | 65.0% | |
| GTTGCAGAGAGGGCTGTCCC+TGG | - | tig0025836:3521-3540 | Msa1425340:intron | 65.0% | |
| GTCCCCGGAAGATGCAGCCC+TGG | + | tig0025836:2357-2376 | Msa1425340:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025836 | gene | 622 | 5603 | 622 | ID=Msa1425340;Name=Msa1425340 |
| tig0025836 | mRNA | 622 | 5603 | 622 | ID=Msa1425340-mRNA-1;Parent=Msa1425340;Name=Msa1425340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=148|1|1|1|1|1|16|342|433 |
| tig0025836 | exon | 622 | 1029 | 622 | ID=Msa1425340-mRNA-1:exon:4263;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 1150 | 1184 | 1150 | ID=Msa1425340-mRNA-1:exon:4262;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 1289 | 1325 | 1289 | ID=Msa1425340-mRNA-1:exon:4261;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 1429 | 1500 | 1429 | ID=Msa1425340-mRNA-1:exon:4260;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 1726 | 1821 | 1726 | ID=Msa1425340-mRNA-1:exon:4259;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 2053 | 2163 | 2053 | ID=Msa1425340-mRNA-1:exon:4258;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 2594 | 2752 | 2594 | ID=Msa1425340-mRNA-1:exon:4257;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 3432 | 3479 | 3432 | ID=Msa1425340-mRNA-1:exon:4256;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 3583 | 3675 | 3583 | ID=Msa1425340-mRNA-1:exon:4255;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 3825 | 3892 | 3825 | ID=Msa1425340-mRNA-1:exon:4254;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 4077 | 4206 | 4077 | ID=Msa1425340-mRNA-1:exon:4253;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 4628 | 4684 | 4628 | ID=Msa1425340-mRNA-1:exon:4252;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 4778 | 4837 | 4778 | ID=Msa1425340-mRNA-1:exon:4251;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 4922 | 4987 | 4922 | ID=Msa1425340-mRNA-1:exon:4250;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 5154 | 5240 | 5154 | ID=Msa1425340-mRNA-1:exon:4249;Parent=Msa1425340-mRNA-1 |
| tig0025836 | exon | 5339 | 5603 | 5339 | ID=Msa1425340-mRNA-1:exon:4248;Parent=Msa1425340-mRNA-1 |
| tig0025836 | five_prime_UTR | 5456 | 5603 | 5456 | ID=Msa1425340-mRNA-1:five_prime_utr;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 5339 | 5455 | 5339 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 5154 | 5240 | 5154 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 4922 | 4987 | 4922 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 4778 | 4837 | 4778 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 4628 | 4684 | 4628 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 4077 | 4206 | 4077 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 3825 | 3892 | 3825 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 3583 | 3675 | 3583 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 3432 | 3479 | 3432 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 2594 | 2752 | 2594 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 2053 | 2163 | 2053 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 1726 | 1821 | 1726 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 1429 | 1500 | 1429 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 1289 | 1325 | 1289 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 1150 | 1184 | 1150 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | CDS | 964 | 1029 | 964 | ID=Msa1425340-mRNA-1:cds;Parent=Msa1425340-mRNA-1 |
| tig0025836 | three_prime_UTR | 622 | 963 | 622 | ID=Msa1425340-mRNA-1:three_prime_utr;Parent=Msa1425340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
