AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1327040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327040 MtrunA17_Chr8g0349671 95.638 298 12 1 1 298 1 297 0.0 585
Msa1327040 MtrunA17_Chr8g0349641 90.970 299 25 2 1 298 1 298 0.0 548
Msa1327040 MtrunA17_Chr8g0349651 89.179 268 27 2 31 298 10 275 1.12e-175 486
Msa1327040 MtrunA17_Chr5g0425391 71.141 298 83 3 1 298 1 295 2.12e-149 420
Msa1327040 MtrunA17_Chr8g0349811 59.333 300 118 3 1 298 1 298 4.76e-124 356
Msa1327040 MtrunA17_Chr8g0349751 58.940 302 117 4 1 298 51 349 2.86e-123 356
Msa1327040 MtrunA17_Chr8g0349781 59.000 300 119 3 1 298 1 298 5.22e-123 353
Msa1327040 MtrunA17_Chr7g0247011 58.863 299 109 5 1 298 1 286 1.06e-122 352
Msa1327040 MtrunA17_Chr8g0349771 57.807 301 121 4 1 298 1 298 8.87e-121 348
Msa1327040 MtrunA17_Chr8g0349761 58.763 291 114 4 7 294 8 295 1.03e-119 345
Msa1327040 MtrunA17_Chr8g0349801 59.589 292 114 3 1 290 1 290 5.58e-119 343
Msa1327040 MtrunA17_Chr8g0349851 57.475 301 123 3 1 298 1 299 1.53e-118 342
Msa1327040 MtrunA17_Chr8g0349831 57.191 299 123 3 3 298 4 300 7.56e-116 335
Msa1327040 MtrunA17_Chr8g0349721 57.432 296 117 5 1 294 1 289 1.21e-114 332
Msa1327040 MtrunA17_Chr8g0349701 56.463 294 123 3 1 294 1 289 1.74e-114 332
Msa1327040 MtrunA17_Chr7g0247031 57.823 294 109 6 7 298 8 288 1.03e-112 327
Msa1327040 MtrunA17_Chr7g0247041 57.823 294 117 5 7 298 6 294 2.32e-112 326
Msa1327040 MtrunA17_Chr8g0349741 57.191 299 115 6 1 298 1 287 1.43e-111 324
Msa1327040 MtrunA17_Chr3g0118511 48.829 299 143 6 7 298 3 298 1.60e-86 261
Msa1327040 MtrunA17_Chr7g0267881 56.723 238 69 4 7 239 9 217 3.99e-84 253
Msa1327040 MtrunA17_Chr3g0131521 40.864 301 141 8 9 298 37 311 7.32e-67 211
Msa1327040 MtrunA17_Chr1g0160511 41.860 301 138 8 9 298 42 316 5.98e-66 209
Msa1327040 MtrunA17_Chr8g0385581 37.874 301 153 8 9 298 39 316 1.07e-56 185
Msa1327040 MtrunA17_Chr5g0437701 53.488 129 58 2 170 298 2 128 1.24e-41 140
Msa1327040 MtrunA17_Chr4g0045691 38.636 176 94 6 134 298 1 173 6.26e-29 109
Msa1327040 MtrunA17_Chr4g0045711 53.333 90 31 4 9 90 24 110 3.58e-17 76.3
Msa1327040 MtrunA17_Chr4g0058731 26.070 257 132 8 9 258 51 256 3.88e-13 68.9
Msa1327040 MtrunA17_Chr6g0466681 25.773 291 170 8 9 297 69 315 4.21e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327040 AT3G61220.1 60.927 302 108 6 1 298 1 296 8.89e-121 348
Msa1327040 AT3G61220.2 60.811 296 106 6 7 298 14 303 7.36e-118 341
Msa1327040 AT3G61220.3 60.811 296 106 6 7 298 38 327 2.38e-117 340
Msa1327040 AT1G01800.1 56.902 297 123 4 4 298 2 295 1.73e-111 325
Msa1327040 AT2G24190.1 55.482 301 126 6 1 298 1 296 6.33e-111 323
Msa1327040 AT2G24190.2 55.593 295 123 6 7 298 12 301 7.75e-109 318
Msa1327040 AT1G01800.2 56.459 209 88 3 90 298 55 260 7.34e-75 230
Msa1327040 AT5G51030.1 39.867 301 144 8 9 298 40 314 2.69e-64 205
Msa1327040 AT3G59710.3 42.808 292 137 9 9 296 21 286 1.10e-60 195
Msa1327040 AT3G59710.1 42.808 292 137 9 9 296 31 296 1.25e-60 195
Msa1327040 AT3G59710.2 42.808 292 137 9 9 296 50 315 3.22e-60 194
Msa1327040 AT5G61830.1 41.060 302 142 8 9 298 39 316 1.20e-59 193
Msa1327040 AT5G61830.2 41.060 302 142 8 9 298 39 316 1.20e-59 193
Msa1327040 AT4G09750.1 28.146 302 147 10 10 297 47 292 1.23e-14 73.6
Msa1327040 AT5G50700.1 32.298 161 87 4 10 170 51 189 1.30e-12 67.8
Msa1327040 AT5G50600.1 32.298 161 87 4 10 170 51 189 1.30e-12 67.8

Find 81 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTAAAATAAAATTAAAA+TGG 0.209512 8_4:-43048105 None:intergenic
GAAGAAACATTGACAACTTT+TGG 0.257926 8_4:-43049598 None:intergenic
AGATATATGCAGGATAATTA+TGG 0.270797 8_4:+43050399 Msa1327040:three_prime_UTR
GACATCATCTATCCATTTCT+TGG 0.276596 8_4:+43050552 Msa1327040:three_prime_UTR
AAAGCTGGAGAAGGGGAATA+AGG 0.276780 8_4:-43049567 None:intergenic
CAATAAATCCTTGATCAAAA+TGG 0.282362 8_4:-43050354 None:intergenic
CTACCTGATGGCAGTCCTTC+TGG 0.282947 8_4:+43050303 Msa1327040:CDS
TCTAGGTATGCAGTTGTTAC+AGG 0.295664 8_4:+43048258 Msa1327040:intron
GTAAACAATGCTGGAATTCC+TGG 0.304962 8_4:+43049062 Msa1327040:CDS
TGTTGCTTCTGCCATTGATA+TGG 0.329939 8_4:-43048156 None:intergenic
GGTACATCTTTAACTAGGTT+GGG 0.332080 8_4:-43050506 None:intergenic
GCCTAAAATAAAATTAAAAT+GGG 0.358661 8_4:-43048104 None:intergenic
ATTTGGAAAACTAGATATCT+TGG 0.368302 8_4:+43048488 Msa1327040:CDS
CAATGGCAGAAGCAACAAAA+AGG 0.374057 8_4:+43048162 Msa1327040:exon
TATGTAGTCATACTATTAAT+AGG 0.380899 8_4:-43050111 None:intergenic
GCATATTGATGGATACTTCT+TGG 0.385641 8_4:-43050178 None:intergenic
ATAGATGATGTCTACTAATA+TGG 0.399239 8_4:-43050541 None:intergenic
ACAAGTGGACGGTGAGGCTT+TGG 0.405380 8_4:+43049088 Msa1327040:CDS
ACCTAACTCAGTTTGTTCAT+AGG 0.408762 8_4:-43049503 None:intergenic
TCATAGATCATGCAAGTATA+AGG 0.408807 8_4:+43048439 Msa1327040:CDS
GGTATTAAAACAAACTACTA+TGG 0.413302 8_4:+43049523 Msa1327040:CDS
AAAATGGTGGCCAGATTGAT+TGG 0.424937 8_4:+43049461 Msa1327040:CDS
GATATATGCAGGATAATTAT+GGG 0.425157 8_4:+43050400 Msa1327040:three_prime_UTR
ATTTGCAGTATGCAAGCAAT+TGG 0.426094 8_4:+43048299 Msa1327040:CDS
ACAGGAGCAAACAAAGGAAT+AGG 0.427233 8_4:+43048276 Msa1327040:CDS
TTGAAACAGCTTTCTTTGCC+TGG 0.427853 8_4:+43048390 Msa1327040:CDS
ACCTATGAACAAACTGAGTT+AGG 0.431339 8_4:+43049502 Msa1327040:CDS
TCACCGTCCACTTGTGCTCC+AGG 0.436898 8_4:-43049080 None:intergenic
TTCTTCATCCATGGGAAAGT+TGG 0.438371 8_4:+43049615 Msa1327040:CDS
TGTCAATGTTTCTTCATCCA+TGG 0.442196 8_4:+43049606 Msa1327040:CDS
ACAGCATTGATGCATATTGA+TGG 0.445089 8_4:-43050189 None:intergenic
TGCATCAATGCTGTTTGTCC+TGG 0.446484 8_4:+43050198 Msa1327040:CDS
ATTGATTCAGCACCTTCATC+AGG 0.451708 8_4:-43050264 None:intergenic
TGCAAGCAATTGGCTTCTAA+AGG 0.461232 8_4:+43048309 Msa1327040:CDS
TTTGCTTAGGTAAACAATGC+TGG 0.462288 8_4:+43049053 Msa1327040:intron
ACTTCCTTAGGCCATCCATT+TGG 0.464515 8_4:-43049985 None:intergenic
GTCAATGTTTCTTCATCCAT+GGG 0.469153 8_4:+43049607 Msa1327040:CDS
ATTGTGAGGACACCAAGAAA+TGG 0.472758 8_4:-43050564 None:intergenic
CCAAGGGTACATCTTTAACT+AGG 0.475964 8_4:-43050511 None:intergenic
GGGTACATCTTTAACTAGGT+TGG 0.485262 8_4:-43050507 None:intergenic
TAAGAGAATAAAGTTCGATC+AGG 0.486327 8_4:+43050475 Msa1327040:three_prime_UTR
AAGCTGGAGAAGGGGAATAA+GGG 0.490106 8_4:-43049566 None:intergenic
TTGCTCTAAGTGCTTATACA+AGG 0.490586 8_4:+43050148 Msa1327040:CDS
ACAGATATAAATTACAATAC+AGG 0.491756 8_4:+43050231 Msa1327040:CDS
CTTCTCTTTAACCATATCAA+TGG 0.492861 8_4:+43048145 Msa1327040:exon
TTCATCCATGGGAAAGTTGG+AGG 0.493146 8_4:+43049618 Msa1327040:CDS
ACATCACTCAGTACTTCCTT+AGG 0.505472 8_4:-43049997 None:intergenic
GCAAGCAATTGGCTTCTAAA+GGG 0.509794 8_4:+43048310 Msa1327040:CDS
TGACCAGAAGGACTGCCATC+AGG 0.515166 8_4:-43050306 None:intergenic
GTACATCTTTAACTAGGTTG+GGG 0.517988 8_4:-43050505 None:intergenic
AAGAAATCATACCACAGTAT+TGG 0.519317 8_4:-43049117 None:intergenic
GTGAGCTTGAAAGCTGGAGA+AGG 0.524950 8_4:-43049576 None:intergenic
AAGGGCTTCTGTCAAGTCCT+TGG 0.525860 8_4:-43049548 None:intergenic
AAAATGTGAAAGATATATGC+AGG 0.527842 8_4:+43050389 Msa1327040:three_prime_UTR
TGCAGAAACTTCCAAATGGA+TGG 0.529550 8_4:+43049974 Msa1327040:intron
GGTTATTTAACACCTGATGA+AGG 0.538333 8_4:+43050252 Msa1327040:CDS
CCTAGTTAAAGATGTACCCT+TGG 0.539794 8_4:+43050511 Msa1327040:three_prime_UTR
TTATCAATTGTCTTTAAATG+TGG 0.544088 8_4:-43048027 None:intergenic
TGCTCTAAGTGCTTATACAA+GGG 0.545903 8_4:+43050149 Msa1327040:CDS
TGTTTGCAGAAACTTCCAAA+TGG 0.554795 8_4:+43049970 Msa1327040:intron
CAGTAGTAGAAAACAAAGGT+TGG 0.558034 8_4:+43050088 Msa1327040:CDS
TGCTGAATCAATTGTGAGGT+TGG 0.563985 8_4:+43050275 Msa1327040:CDS
ACTAATATGGTGTGACACCA+AGG 0.571697 8_4:-43050528 None:intergenic
TGAGCTTGAAAGCTGGAGAA+GGG 0.571786 8_4:-43049575 None:intergenic
ACTTCCAAATGGATGGCCTA+AGG 0.577137 8_4:+43049981 Msa1327040:CDS
AACAAACTACTATGGAGCCA+AGG 0.591502 8_4:+43049531 Msa1327040:CDS
ATATACCTCCAACTTTCCCA+TGG 0.596721 8_4:-43049623 None:intergenic
GAGCTTGAAAGCTGGAGAAG+GGG 0.615068 8_4:-43049574 None:intergenic
TGGAATTCCTGGAGCACAAG+TGG 0.626468 8_4:+43049073 Msa1327040:CDS
CTAATATGGTGTGACACCAA+GGG 0.640418 8_4:-43050527 None:intergenic
ATTCCTGGAGCACAAGTGGA+CGG 0.643422 8_4:+43049077 Msa1327040:CDS
AGGTTGGCATTGCTACCTGA+TGG 0.648231 8_4:+43050291 Msa1327040:CDS
TTTGGCTGCTGCCAATACTG+TGG 0.652336 8_4:+43049106 Msa1327040:CDS
GTTGTTACAGGAGCAAACAA+AGG 0.652694 8_4:+43048270 Msa1327040:CDS
GGTTCAGTAGTAGAAAACAA+AGG 0.658570 8_4:+43050084 Msa1327040:CDS
GAAGTGCTAGCAAATATGAG+TGG 0.665943 8_4:-43048126 None:intergenic
CCTAAAATAAAATTAAAATG+GGG 0.670428 8_4:-43048103 None:intergenic
TGGAGCACAAGTGGACGGTG+AGG 0.671657 8_4:+43049082 Msa1327040:CDS
ACTGCAAGAGATGAAAAGAG+AGG 0.675593 8_4:+43048348 Msa1327040:CDS
AAGGTGCTGAATCAATTGTG+AGG 0.744935 8_4:+43050271 Msa1327040:CDS
GGCTTCTAAAGGGATCACTG+TGG 0.806348 8_4:+43048320 Msa1327040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTAATCTTTTTTCT+AGG + chr8_4:43048241-43048260 Msa1327040:intron 10.0%
!! AATTATAAGCTATTATTATA+AGG + chr8_4:43048964-43048983 Msa1327040:intron 10.0%
!! AATGAAAAATATCTAAAAAA+TGG + chr8_4:43049698-43049717 Msa1327040:intron 10.0%
!! ATAACAAAAAGAAACATTAT+TGG + chr8_4:43047952-43047971 Msa1327040:five_prime_UTR 15.0%
!! CCTAAAATAAAATTAAAATG+GGG - chr8_4:43048106-43048125 None:intergenic 15.0%
!! GCCTAAAATAAAATTAAAAT+GGG - chr8_4:43048107-43048126 None:intergenic 15.0%
!! TTTAATTGCATATATATGAA+GGG - chr8_4:43048227-43048246 None:intergenic 15.0%
!! ATTTAATTGCATATATATGA+AGG - chr8_4:43048228-43048247 None:intergenic 15.0%
!!! ATGCATTGTTTTTTTATTTA+TGG + chr8_4:43048856-43048875 Msa1327040:intron 15.0%
!!! TTTCAGTTTTTTTAATTGTT+TGG - chr8_4:43049338-43049357 None:intergenic 15.0%
!!! TGAAGCATTAATAAATTTTA+AGG - chr8_4:43049869-43049888 None:intergenic 15.0%
!!! CAATAAAAAATACACATTTT+TGG + chr8_4:43050583-43050602 Msa1327040:three_prime_UTR 15.0%
!! TTATCAATTGTCTTTAAATG+TGG - chr8_4:43048030-43048049 None:intergenic 20.0%
!!! CCCCATTTTAATTTTATTTT+AGG + chr8_4:43048103-43048122 Msa1327040:five_prime_UTR 20.0%
!! GGCCTAAAATAAAATTAAAA+TGG - chr8_4:43048108-43048127 None:intergenic 20.0%
!!! TTTTGAAGAATAAAAGGATA+AGG - chr8_4:43048202-43048221 None:intergenic 20.0%
!!! GATAGAGTATATCTAAATTT+TGG + chr8_4:43048549-43048568 Msa1327040:intron 20.0%
!!! GTATATCTAAATTTTGGATT+TGG + chr8_4:43048555-43048574 Msa1327040:intron 20.0%
!!! TGCAGATTTAATATTGTTTT+TGG + chr8_4:43048666-43048685 Msa1327040:intron 20.0%
!!! AGATTTAATATTGTTTTTGG+TGG + chr8_4:43048669-43048688 Msa1327040:intron 20.0%
!!! AATTCAAGTTTTCTTGTTTT+TGG + chr8_4:43049431-43049450 Msa1327040:intron 20.0%
!!! TATTAGTTACGTTAGTTTTT+AGG + chr8_4:43049761-43049780 Msa1327040:intron 20.0%
!!! ATTAGTTACGTTAGTTTTTA+GGG + chr8_4:43049762-43049781 Msa1327040:intron 20.0%
!!! AGTTTTGAATCAATTTCTAA+AGG + chr8_4:43050050-43050069 Msa1327040:CDS 20.0%
!!! ATTTCTAAAGGATTTTAAAG+AGG + chr8_4:43050062-43050081 Msa1327040:CDS 20.0%
!!! TTTCTAAAGGATTTTAAAGA+GGG + chr8_4:43050063-43050082 Msa1327040:CDS 20.0%
!! TATGTAGTCATACTATTAAT+AGG - chr8_4:43050114-43050133 None:intergenic 20.0%
!! ACAGATATAAATTACAATAC+AGG + chr8_4:43050231-43050250 Msa1327040:CDS 20.0%
!!! AATGTGTATTTTTTATTGTG+AGG - chr8_4:43050581-43050600 None:intergenic 20.0%
!!! TGACATATTTTAAAACTCAA+GGG - chr8_4:43050610-43050629 None:intergenic 20.0%
!!! TTGACATATTTTAAAACTCA+AGG - chr8_4:43050611-43050630 None:intergenic 20.0%
!!! TTTTAAGTGAGTTGTATTTT+AGG + chr8_4:43050639-43050658 Msa1327040:three_prime_UTR 20.0%
!!! TTTAAGTGAGTTGTATTTTA+GGG + chr8_4:43050640-43050659 Msa1327040:three_prime_UTR 20.0%
!!! AGGGTATTTTGAAGAATAAA+AGG - chr8_4:43048208-43048227 None:intergenic 25.0%
!! GATTTTATCAAGAACCAATT+TGG + chr8_4:43048471-43048490 Msa1327040:CDS 25.0%
!!! AGATATCTAGTTTTCCAAAT+TGG - chr8_4:43048488-43048507 None:intergenic 25.0%
! ATTTGGAAAACTAGATATCT+TGG + chr8_4:43048488-43048507 Msa1327040:CDS 25.0%
!! AAGGTATCAATGAAACTTAA+TGG - chr8_4:43048917-43048936 None:intergenic 25.0%
! GCAAAATATTTCATTTGACA+AGG - chr8_4:43048936-43048955 None:intergenic 25.0%
!!! ATCTGTTTTTTCATACAAAG+TGG - chr8_4:43049368-43049387 None:intergenic 25.0%
!!! TTATTTTACTCCAATCAATC+TGG - chr8_4:43049474-43049493 None:intergenic 25.0%
! GGTATTAAAACAAACTACTA+TGG + chr8_4:43049523-43049542 Msa1327040:CDS 25.0%
!! ATAACTTTTGCAACTTTCTT+AGG + chr8_4:43049653-43049672 Msa1327040:intron 25.0%
!!! ACAACAAAGGATTTTTAAGA+AGG - chr8_4:43049804-43049823 None:intergenic 25.0%
!! ACTTTGAACTATTTTGCAAT+TGG + chr8_4:43049921-43049940 Msa1327040:intron 25.0%
! CAATAAATCCTTGATCAAAA+TGG - chr8_4:43050357-43050376 None:intergenic 25.0%
! AAAATGTGAAAGATATATGC+AGG + chr8_4:43050389-43050408 Msa1327040:three_prime_UTR 25.0%
! AGATATATGCAGGATAATTA+TGG + chr8_4:43050399-43050418 Msa1327040:three_prime_UTR 25.0%
! GATATATGCAGGATAATTAT+GGG + chr8_4:43050400-43050419 Msa1327040:three_prime_UTR 25.0%
! ATAGATGATGTCTACTAATA+TGG - chr8_4:43050544-43050563 None:intergenic 25.0%
!!! TTAAGTGAGTTGTATTTTAG+GGG + chr8_4:43050641-43050660 Msa1327040:three_prime_UTR 25.0%
CTTCTCTTTAACCATATCAA+TGG + chr8_4:43048145-43048164 Msa1327040:exon 30.0%
TCATAGATCATGCAAGTATA+AGG + chr8_4:43048439-43048458 Msa1327040:CDS 30.0%
CACTAAAGTAAGTGCATATT+TGG + chr8_4:43048609-43048628 Msa1327040:intron 30.0%
ATCTGCATAATCAATCACTT+TGG - chr8_4:43048653-43048672 None:intergenic 30.0%
! CTGTTGTTATGATTTGTGTT+TGG - chr8_4:43048816-43048835 None:intergenic 30.0%
ACAATGCATTCGAATATCAA+CGG - chr8_4:43048845-43048864 None:intergenic 30.0%
CAAATATTTGTGATCATTCG+AGG - chr8_4:43049022-43049041 None:intergenic 30.0%
TTGTTTACCTAAGCAAAGTT+TGG - chr8_4:43049050-43049069 None:intergenic 30.0%
AAGAAATCATACCACAGTAT+TGG - chr8_4:43049120-43049139 None:intergenic 30.0%
ATCGATTGAAGTAATAACCA+AGG - chr8_4:43049284-43049303 None:intergenic 30.0%
!!! GTTTTCTTGTTTTTGGTTTC+AGG + chr8_4:43049438-43049457 Msa1327040:intron 30.0%
!!! TGTTTTTGGTTTCAGGAAAA+TGG + chr8_4:43049445-43049464 Msa1327040:intron 30.0%
! GAAGAAACATTGACAACTTT+TGG - chr8_4:43049601-43049620 None:intergenic 30.0%
!! ATTTTTAAGAAGGATGTCGA+GGG - chr8_4:43049794-43049813 None:intergenic 30.0%
! CATCAATCTTTTCTTCTGTA+AGG - chr8_4:43050029-43050048 None:intergenic 30.0%
!! AAGAGAAACCATTTTGATCA+AGG + chr8_4:43050346-43050365 Msa1327040:exon 30.0%
TAAGAGAATAAAGTTCGATC+AGG + chr8_4:43050475-43050494 Msa1327040:three_prime_UTR 30.0%
ATTTGCAGTATGCAAGCAAT+TGG + chr8_4:43048299-43048318 Msa1327040:CDS 35.0%
TGATGAAAAACAACAAGACC+AGG - chr8_4:43048411-43048430 None:intergenic 35.0%
!! TTTGGACTCAATTTTGAGAG+AGG + chr8_4:43048627-43048646 Msa1327040:intron 35.0%
TGAAACTCCAAACTTTGCTT+AGG + chr8_4:43049040-43049059 Msa1327040:intron 35.0%
TTTGCTTAGGTAAACAATGC+TGG + chr8_4:43049053-43049072 Msa1327040:intron 35.0%
!! TTAAACTGCCTTAGCTTTTC+GGG - chr8_4:43049145-43049164 None:intergenic 35.0%
!! GTTAAACTGCCTTAGCTTTT+CGG - chr8_4:43049146-43049165 None:intergenic 35.0%
! TCTAAAGCGACTTAAAACCT+TGG + chr8_4:43049264-43049283 Msa1327040:intron 35.0%
!!! TTTTGGTTTCAGGAAAATGG+TGG + chr8_4:43049448-43049467 Msa1327040:intron 35.0%
ACCTATGAACAAACTGAGTT+AGG + chr8_4:43049502-43049521 Msa1327040:CDS 35.0%
! ACCTAACTCAGTTTGTTCAT+AGG - chr8_4:43049506-43049525 None:intergenic 35.0%
TGTCAATGTTTCTTCATCCA+TGG + chr8_4:43049606-43049625 Msa1327040:CDS 35.0%
GTCAATGTTTCTTCATCCAT+GGG + chr8_4:43049607-43049626 Msa1327040:CDS 35.0%
!! GATTTTTAAGAAGGATGTCG+AGG - chr8_4:43049795-43049814 None:intergenic 35.0%
TGTTTGCAGAAACTTCCAAA+TGG + chr8_4:43049970-43049989 Msa1327040:intron 35.0%
GGTTCAGTAGTAGAAAACAA+AGG + chr8_4:43050084-43050103 Msa1327040:CDS 35.0%
CAGTAGTAGAAAACAAAGGT+TGG + chr8_4:43050088-43050107 Msa1327040:CDS 35.0%
! TTGCTCTAAGTGCTTATACA+AGG + chr8_4:43050148-43050167 Msa1327040:CDS 35.0%
! TGCTCTAAGTGCTTATACAA+GGG + chr8_4:43050149-43050168 Msa1327040:CDS 35.0%
! GCATATTGATGGATACTTCT+TGG - chr8_4:43050181-43050200 None:intergenic 35.0%
!! ACAGCATTGATGCATATTGA+TGG - chr8_4:43050192-43050211 None:intergenic 35.0%
! ATATCTGTTTTCACAAAGCC+AGG - chr8_4:43050219-43050238 None:intergenic 35.0%
GGTTATTTAACACCTGATGA+AGG + chr8_4:43050252-43050271 Msa1327040:CDS 35.0%
CTAACAAAAAAGTGACCAGA+AGG - chr8_4:43050321-43050340 None:intergenic 35.0%
GTACATCTTTAACTAGGTTG+GGG - chr8_4:43050508-43050527 None:intergenic 35.0%
GGTACATCTTTAACTAGGTT+GGG - chr8_4:43050509-43050528 None:intergenic 35.0%
GACATCATCTATCCATTTCT+TGG + chr8_4:43050552-43050571 Msa1327040:three_prime_UTR 35.0%
! GAAGTGCTAGCAAATATGAG+TGG - chr8_4:43048129-43048148 None:intergenic 40.0%
! TGTTGCTTCTGCCATTGATA+TGG - chr8_4:43048159-43048178 None:intergenic 40.0%
CAATGGCAGAAGCAACAAAA+AGG + chr8_4:43048162-43048181 Msa1327040:exon 40.0%
TCTAGGTATGCAGTTGTTAC+AGG + chr8_4:43048258-43048277 Msa1327040:intron 40.0%
GTTGTTACAGGAGCAAACAA+AGG + chr8_4:43048270-43048289 Msa1327040:CDS 40.0%
ACAGGAGCAAACAAAGGAAT+AGG + chr8_4:43048276-43048295 Msa1327040:CDS 40.0%
! TGCAAGCAATTGGCTTCTAA+AGG + chr8_4:43048309-43048328 Msa1327040:CDS 40.0%
! GCAAGCAATTGGCTTCTAAA+GGG + chr8_4:43048310-43048329 Msa1327040:CDS 40.0%
ACTGCAAGAGATGAAAAGAG+AGG + chr8_4:43048348-43048367 Msa1327040:CDS 40.0%
TTGAAACAGCTTTCTTTGCC+TGG + chr8_4:43048390-43048409 Msa1327040:CDS 40.0%
GTAAACAATGCTGGAATTCC+TGG + chr8_4:43049062-43049081 Msa1327040:CDS 40.0%
TTTCTTTCCCCGAAAAGCTA+AGG + chr8_4:43049134-43049153 Msa1327040:intron 40.0%
!! TAAACTGCCTTAGCTTTTCG+GGG - chr8_4:43049144-43049163 None:intergenic 40.0%
CACAAAGATTGACGTTGTTG+CGG - chr8_4:43049230-43049249 None:intergenic 40.0%
AAAATGGTGGCCAGATTGAT+TGG + chr8_4:43049461-43049480 Msa1327040:CDS 40.0%
AACAAACTACTATGGAGCCA+AGG + chr8_4:43049531-43049550 Msa1327040:CDS 40.0%
TTCTTCATCCATGGGAAAGT+TGG + chr8_4:43049615-43049634 Msa1327040:CDS 40.0%
ATATACCTCCAACTTTCCCA+TGG - chr8_4:43049626-43049645 None:intergenic 40.0%
AGTGAGCTAAAGGACAACAA+AGG - chr8_4:43049817-43049836 None:intergenic 40.0%
TGCAGAAACTTCCAAATGGA+TGG + chr8_4:43049974-43049993 Msa1327040:intron 40.0%
ACATCACTCAGTACTTCCTT+AGG - chr8_4:43050000-43050019 None:intergenic 40.0%
! ATTGATTCAGCACCTTCATC+AGG - chr8_4:43050267-43050286 None:intergenic 40.0%
!! AAGGTGCTGAATCAATTGTG+AGG + chr8_4:43050271-43050290 Msa1327040:CDS 40.0%
TGCTGAATCAATTGTGAGGT+TGG + chr8_4:43050275-43050294 Msa1327040:CDS 40.0%
GGGTACATCTTTAACTAGGT+TGG - chr8_4:43050510-43050529 None:intergenic 40.0%
! CCAAGGGTACATCTTTAACT+AGG - chr8_4:43050514-43050533 None:intergenic 40.0%
CCTAGTTAAAGATGTACCCT+TGG + chr8_4:43050511-43050530 Msa1327040:three_prime_UTR 40.0%
CTAATATGGTGTGACACCAA+GGG - chr8_4:43050530-43050549 None:intergenic 40.0%
ACTAATATGGTGTGACACCA+AGG - chr8_4:43050531-43050550 None:intergenic 40.0%
ATTGTGAGGACACCAAGAAA+TGG - chr8_4:43050567-43050586 None:intergenic 40.0%
AAGCTGGAGAAGGGGAATAA+GGG - chr8_4:43049569-43049588 None:intergenic 45.0%
AAAGCTGGAGAAGGGGAATA+AGG - chr8_4:43049570-43049589 None:intergenic 45.0%
TGAGCTTGAAAGCTGGAGAA+GGG - chr8_4:43049578-43049597 None:intergenic 45.0%
! CTTTTGGTGAGCTTGAAAGC+TGG - chr8_4:43049585-43049604 None:intergenic 45.0%
TTCATCCATGGGAAAGTTGG+AGG + chr8_4:43049618-43049637 Msa1327040:CDS 45.0%
! GAGATTCGAGTTCAAACCCT+CGG - chr8_4:43049847-43049866 None:intergenic 45.0%
ACTTCCAAATGGATGGCCTA+AGG + chr8_4:43049981-43050000 Msa1327040:CDS 45.0%
ACTTCCTTAGGCCATCCATT+TGG - chr8_4:43049988-43050007 None:intergenic 45.0%
! TGCATCAATGCTGTTTGTCC+TGG + chr8_4:43050198-43050217 Msa1327040:CDS 45.0%
! GGCTTCTAAAGGGATCACTG+TGG + chr8_4:43048320-43048339 Msa1327040:CDS 50.0%
TGGAATTCCTGGAGCACAAG+TGG + chr8_4:43049073-43049092 Msa1327040:CDS 50.0%
ATTCCTGGAGCACAAGTGGA+CGG + chr8_4:43049077-43049096 Msa1327040:CDS 50.0%
TTTGGCTGCTGCCAATACTG+TGG + chr8_4:43049106-43049125 Msa1327040:CDS 50.0%
!! GTCGCTTTAGAAGACGCAGT+TGG - chr8_4:43049255-43049274 None:intergenic 50.0%
AAGGGCTTCTGTCAAGTCCT+TGG - chr8_4:43049551-43049570 None:intergenic 50.0%
GAGCTTGAAAGCTGGAGAAG+GGG - chr8_4:43049577-43049596 None:intergenic 50.0%
GTGAGCTTGAAAGCTGGAGA+AGG - chr8_4:43049579-43049598 None:intergenic 50.0%
AGGTTGGCATTGCTACCTGA+TGG + chr8_4:43050291-43050310 Msa1327040:CDS 50.0%
ACAAGTGGACGGTGAGGCTT+TGG + chr8_4:43049088-43049107 Msa1327040:CDS 55.0%
!! CGGCTCGGTTAGTGAGCTAA+AGG - chr8_4:43049827-43049846 None:intergenic 55.0%
TTAGCTCACTAACCGAGCCG+AGG + chr8_4:43049827-43049846 Msa1327040:intron 55.0%
TAGCTCACTAACCGAGCCGA+GGG + chr8_4:43049828-43049847 Msa1327040:intron 55.0%
TCGAGTTCAAACCCTCGGCT+CGG - chr8_4:43049842-43049861 None:intergenic 55.0%
CTACCTGATGGCAGTCCTTC+TGG + chr8_4:43050303-43050322 Msa1327040:CDS 55.0%
TGACCAGAAGGACTGCCATC+AGG - chr8_4:43050309-43050328 None:intergenic 55.0%
TCACCGTCCACTTGTGCTCC+AGG - chr8_4:43049083-43049102 None:intergenic 60.0%
TGGAGCACAAGTGGACGGTG+AGG + chr8_4:43049082-43049101 Msa1327040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 43047926 43050671 43047926 ID=Msa1327040;Name=Msa1327040
chr8_4 mRNA 43047926 43050671 43047926 ID=Msa1327040-mRNA-1;Parent=Msa1327040;Name=Msa1327040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=238|1|1|1|1|1|5|309|298
chr8_4 exon 43047926 43048183 43047926 ID=Msa1327040-mRNA-1:exon:12332;Parent=Msa1327040-mRNA-1
chr8_4 exon 43048263 43048509 43048263 ID=Msa1327040-mRNA-1:exon:12333;Parent=Msa1327040-mRNA-1
chr8_4 exon 43049062 43049127 43049062 ID=Msa1327040-mRNA-1:exon:12334;Parent=Msa1327040-mRNA-1
chr8_4 exon 43049460 43049639 43049460 ID=Msa1327040-mRNA-1:exon:12335;Parent=Msa1327040-mRNA-1
chr8_4 exon 43049979 43050671 43049979 ID=Msa1327040-mRNA-1:exon:12336;Parent=Msa1327040-mRNA-1
chr8_4 five_prime_UTR 43047926 43048163 43047926 ID=Msa1327040-mRNA-1:five_prime_utr;Parent=Msa1327040-mRNA-1
chr8_4 CDS 43048164 43048183 43048164 ID=Msa1327040-mRNA-1:cds;Parent=Msa1327040-mRNA-1
chr8_4 CDS 43048263 43048509 43048263 ID=Msa1327040-mRNA-1:cds;Parent=Msa1327040-mRNA-1
chr8_4 CDS 43049062 43049127 43049062 ID=Msa1327040-mRNA-1:cds;Parent=Msa1327040-mRNA-1
chr8_4 CDS 43049460 43049639 43049460 ID=Msa1327040-mRNA-1:cds;Parent=Msa1327040-mRNA-1
chr8_4 CDS 43049979 43050362 43049979 ID=Msa1327040-mRNA-1:cds;Parent=Msa1327040-mRNA-1
chr8_4 three_prime_UTR 43050363 43050671 43050363 ID=Msa1327040-mRNA-1:three_prime_utr;Parent=Msa1327040-mRNA-1
Gene Sequence

>Msa1327040

ATGGCAGAAGCAACAAAAAGGTATGCAGTTGTTACAGGAGCAAACAAAGGAATAGGATTTGCAGTATGCAAGCAATTGGCTTCTAAAGGGATCACTGTGGTGCTTACTGCAAGAGATGAAAAGAGAGGTCTTGAAGCTGTTGAGAAATTGAAACAGCTTTCTTTGCCTGGTCTTGTTGTTTTTCATCAACTTGATGTCATAGATCATGCAAGTATAAGGTCATTTGTAGATTTTATCAAGAACCAATTTGGAAAACTAGATATCTTGGTAAACAATGCTGGAATTCCTGGAGCACAAGTGGACGGTGAGGCTTTGGCTGCTGCCAATACTGTGGAAAATGGTGGCCAGATTGATTGGAGTAAAATAATAACTCAAACCTATGAACAAACTGAGTTAGGTATTAAAACAAACTACTATGGAGCCAAGGACTTGACAGAAGCCCTTATTCCCCTTCTCCAGCTTTCAAGCTCACCAAAAGTTGTCAATGTTTCTTCATCCATGGGAAAGTTGGAGAAACTTCCAAATGGATGGCCTAAGGAAGTACTGAGTGATGTTGAAAACCTTACAGAAGAAAAGATTGATGAAGTTTTGAATCAATTTCTAAAGGATTTTAAAGAGGGTTCAGTAGTAGAAAACAAAGGTTGGCCTATTAATAGTATGACTACATATATTATCTCAAAAGTTGCTCTAAGTGCTTATACAAGGGTTGCAGCCAAGAAGTATCCATCAATATGCATCAATGCTGTTTGTCCTGGCTTTGTGAAAACAGATATAAATTACAATACAGGTTATTTAACACCTGATGAAGGTGCTGAATCAATTGTGAGGTTGGCATTGCTACCTGATGGCAGTCCTTCTGGTCACTTTTTTGTTAGAAGTGAAGAGAAACCATTTTGA

Protein sequence

>Msa1327040

MAEATKRYAVVTGANKGIGFAVCKQLASKGITVVLTARDEKRGLEAVEKLKQLSLPGLVVFHQLDVIDHASIRSFVDFIKNQFGKLDILVNNAGIPGAQVDGEALAAANTVENGGQIDWSKIITQTYEQTELGIKTNYYGAKDLTEALIPLLQLSSSPKVVNVSSSMGKLEKLPNGWPKEVLSDVENLTEEKIDEVLNQFLKDFKEGSVVENKGWPINSMTTYIISKVALSAYTRVAAKKYPSICINAVCPGFVKTDINYNTGYLTPDEGAESIVRLALLPDGSPSGHFFVRSEEKPF*