AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807840 MtrunA17_Chr5g0422391 98.094 997 19 0 1 997 1 997 0.0 1989
Msa0807840 MtrunA17_Chr1g0198861 66.469 1014 287 18 1 996 1 979 0.0 1189
Msa0807840 MtrunA17_Chr1g0151531 52.778 360 147 3 621 977 407 746 1.03e-113 368
Msa0807840 MtrunA17_Chr1g0151531 37.712 236 84 6 126 361 128 300 7.32e-29 124
Msa0807840 MtrunA17_Chr4g0045981 57.353 272 110 3 715 984 346 613 1.02e-98 324
Msa0807840 MtrunA17_Chr4g0069431 46.947 262 139 0 718 979 296 557 1.16e-80 273
Msa0807840 MtrunA17_Chr5g0430701 43.382 272 147 4 707 976 151 417 4.25e-67 232
Msa0807840 MtrunA17_Chr8g0340991 34.095 525 278 14 1 493 24 512 1.00e-60 218
Msa0807840 MtrunA17_Chr2g0330791 33.761 468 273 11 1 453 13 458 3.83e-60 215
Msa0807840 MtrunA17_Chr2g0307341 32.819 454 251 13 110 548 33 447 8.89e-42 161
Msa0807840 MtrunA17_Chr1g0179671 25.781 256 180 3 125 375 98 348 3.10e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807840 AT3G25690.1 70.414 1014 237 16 1 981 1 984 0.0 1238
Msa0807840 AT3G25690.2 70.414 1014 237 16 1 981 1 984 0.0 1238
Msa0807840 AT3G25690.6 70.414 1014 237 16 1 981 1 984 0.0 1238
Msa0807840 AT3G25690.4 70.414 1014 237 16 1 981 1 984 0.0 1238
Msa0807840 AT3G25690.5 70.437 1008 235 16 7 981 9 986 0.0 1227
Msa0807840 AT3G25690.3 66.333 499 132 9 191 675 53 529 0.0 568
Msa0807840 AT4G18570.1 56.429 280 105 4 715 984 352 624 9.48e-94 311
Msa0807840 AT1G48280.1 46.038 265 143 0 715 979 278 542 5.74e-81 274
Msa0807840 AT1G07120.1 47.529 263 129 5 716 976 128 383 1.10e-71 243
Msa0807840 AT1G52080.2 32.849 551 292 15 1 502 13 534 2.24e-63 226
Msa0807840 AT1G52080.1 32.849 551 292 15 1 502 13 534 2.24e-63 226
Msa0807840 AT4G18570.2 53.846 208 81 3 715 912 352 554 9.10e-63 224
Msa0807840 AT1G07120.2 45.729 199 103 3 716 912 128 323 6.42e-49 177

Find 251 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCCATTTCTTCAATTTC+TGG 0.106112 5_3:-31096475 None:intergenic
TTGCTTAAACAACAAGTTTC+TGG 0.139596 5_3:+31095275 Msa0807840:CDS
ATTTGAAGGAATGCATAATT+TGG 0.162253 5_3:+31094324 Msa0807840:five_prime_UTR
CCCTAGCCATGGCCAATTTA+TGG 0.175617 5_3:-31096826 None:intergenic
TGATGAGTATTCTATGTTTC+TGG 0.187520 5_3:-31099398 None:intergenic
CTCCGCTTGCAGAGAATTAA+TGG 0.200637 5_3:-31095120 None:intergenic
ATTTCACGGTACAGAGAATT+TGG 0.209559 5_3:+31098440 Msa0807840:CDS
AATATAGATGTGAAATTTAA+AGG 0.211502 5_3:+31099734 Msa0807840:three_prime_UTR
TTGCCTTCGCTTGTGATTTC+GGG 0.216812 5_3:-31096286 None:intergenic
AATTTCACATCTATATTTAC+AGG 0.220673 5_3:-31099728 None:intergenic
CTTGAGGGGCTTGAGGGGTT+TGG 0.222362 5_3:-31099352 None:intergenic
TTTGCCTTCGCTTGTGATTT+CGG 0.223108 5_3:-31096287 None:intergenic
CTAGCAGTATTAGGAGTTTC+AGG 0.254443 5_3:-31096680 None:intergenic
GAATCTTGTAGCCAGTTTAT+TGG 0.264027 5_3:-31098467 None:intergenic
GTTGAAGGAATAATCAGTTT+TGG 0.265958 5_3:+31094270 Msa0807840:five_prime_UTR
AAAGCAAGAGTTCAGAAGTT+TGG 0.275073 5_3:+31096875 Msa0807840:CDS
AGCAGCTTCACATGAGAGTT+TGG 0.283940 5_3:-31098168 None:intergenic
TTTCAGGCAGTTCTCCAAAA+AGG 0.293704 5_3:+31096543 Msa0807840:CDS
GATAAAAGGTCTTCAAATTC+TGG 0.297145 5_3:-31094843 None:intergenic
ATAAACTGGCTACAAGATTC+TGG 0.304894 5_3:+31098470 Msa0807840:CDS
AATCTTGTAGCCAGTTTATT+GGG 0.305182 5_3:-31098466 None:intergenic
ATATCAAGATCTGATGAAAT+TGG 0.306706 5_3:+31098115 Msa0807840:CDS
AGACCAGCACTAGCAGTATT+AGG 0.325676 5_3:-31096689 None:intergenic
CACCAACTTGAGGGGCTTGA+GGG 0.334010 5_3:-31099358 None:intergenic
GTATAAAGATCGCCATAAAT+TGG 0.334328 5_3:+31096814 Msa0807840:CDS
TCTGAACTTGATGCATTATC+TGG 0.340915 5_3:+31098862 Msa0807840:CDS
AAGCAAGAGTTCAGAAGTTT+GGG 0.342986 5_3:+31096876 Msa0807840:CDS
ACTCAATCTCTCCAGATAAA+AGG 0.348637 5_3:-31094857 None:intergenic
AAGAACACTAGAATCATCTT+TGG 0.349582 5_3:-31096501 None:intergenic
TAATCCAGAAATTGAAGAAA+TGG 0.351637 5_3:+31096471 Msa0807840:CDS
TTGTCAAAATCTTCACTTCC+TGG 0.354802 5_3:-31096392 None:intergenic
ACCTAAACTTTCTAAAATAA+AGG 0.354901 5_3:+31096958 Msa0807840:CDS
GAGATTGAGTTATCATTTCC+TGG 0.357651 5_3:+31094870 Msa0807840:CDS
TTAGGTGGCAAAGATATATT+AGG 0.357928 5_3:-31096941 None:intergenic
TACTATCATGAAGCTTCTTT+AGG 0.358982 5_3:-31094359 None:intergenic
TGAGTATGAGTGTTAAATCT+AGG 0.365473 5_3:+31096567 Msa0807840:CDS
TCTCTAGCTGGTTCCTTCTC+AGG 0.365817 5_3:-31098886 None:intergenic
AGTGCATCTGCTTTACCTTC+AGG 0.366034 5_3:-31098074 None:intergenic
CCTGCTTTCATCACTGTTGA+AGG 0.369661 5_3:+31094255 Msa0807840:five_prime_UTR
GTTCTTTAAATTATATTTGA+AGG 0.371370 5_3:+31094310 Msa0807840:five_prime_UTR
GGAGGAAGAAGAGGAGAAAG+AGG 0.375017 5_3:+31094761 Msa0807840:CDS
ATCAATCTTGTTCCCCTAGC+TGG 0.376302 5_3:+31093910 Msa0807840:five_prime_UTR
ACCTGGTTGCCTTTGTGAAC+TGG 0.376411 5_3:+31097658 Msa0807840:CDS
GAGTCTTACCTCTGTCATAT+TGG 0.376704 5_3:-31095480 None:intergenic
ATCAAGTGACTCACTAAATT+CGG 0.378484 5_3:+31096724 Msa0807840:CDS
AGGTCTATCTCTTTCGATCT+TGG 0.378644 5_3:-31096921 None:intergenic
GGAGAATTGCTTGAGTACTA+TGG 0.381095 5_3:+31095014 Msa0807840:CDS
CTACAAGATTCTGGAGTTGT+AGG 0.385109 5_3:+31098479 Msa0807840:CDS
GTGATGAAACAGAATCCATT+TGG 0.386047 5_3:-31094232 None:intergenic
AATCCAGAAATTGAAGAAAT+GGG 0.386976 5_3:+31096472 Msa0807840:CDS
TTTATCAATCATTGATGAAA+CGG 0.394020 5_3:+31097323 Msa0807840:CDS
ATGCTAGGAACAACATGATT+GGG 0.399059 5_3:+31097401 Msa0807840:CDS
CTGTCTTGAAGCACTTTGAT+TGG 0.399397 5_3:+31098051 Msa0807840:CDS
CTGAAGACTTGGACATCAAA+TGG 0.401991 5_3:-31096760 None:intergenic
GAACCACCACCTGATGGTTT+AGG 0.405766 5_3:-31097109 None:intergenic
TTGCTGTTGTGGAGCTTAAG+AGG 0.412288 5_3:+31095378 Msa0807840:CDS
TTTGAACTAGCATGAACAAT+TGG 0.413777 5_3:-31096986 None:intergenic
TCCTTGTTAGTTTCTTCAAC+GGG 0.416929 5_3:+31097367 Msa0807840:CDS
GCAGCTTCACATGAGAGTTT+GGG 0.419555 5_3:-31098167 None:intergenic
AGATGAAGAACTTTCCTTCC+TGG 0.419668 5_3:+31097683 Msa0807840:CDS
TTATCAATCATTGATGAAAC+GGG 0.420903 5_3:+31097324 Msa0807840:CDS
CTTGGAAGAGGCGGTGGAGG+AGG 0.422673 5_3:-31097238 None:intergenic
GGTCTTCATTTGCGTGTCTC+AGG 0.427743 5_3:-31096106 None:intergenic
AGTAGCATTCACAATATAAT+CGG 0.429001 5_3:-31099544 None:intergenic
GGTCCACCTGGTGGAGGAGG+AGG 0.431071 5_3:-31097214 None:intergenic
CGCTTGAAAGCTTGATGATA+AGG 0.432388 5_3:+31096594 Msa0807840:CDS
AGTGAAGGAATTGGAGGAAA+GGG 0.434864 5_3:+31094977 Msa0807840:CDS
TCACCAACTTGAGGGGCTTG+AGG 0.435017 5_3:-31099359 None:intergenic
CCACCTGGTGGACGAGGAGG+AGG 0.435071 5_3:-31097190 None:intergenic
GTTGGCTAGAAACAAGATAA+AGG 0.435240 5_3:+31095199 Msa0807840:CDS
GGAAGAGGCGGTGGAGGAGG+CGG 0.438647 5_3:-31097235 None:intergenic
GATGGTTTAGGAGGTGGCCT+TGG 0.439613 5_3:-31097097 None:intergenic
TGGAAGGACTTCAAATGAAT+CGG 0.444993 5_3:+31096141 Msa0807840:CDS
TCTTCACTTCCTGGTGAAGA+AGG 0.445084 5_3:-31096383 None:intergenic
AATTTGGAATCCCAATAAAC+TGG 0.445616 5_3:+31098456 Msa0807840:CDS
GCTTGAGTACTATGGTTTGA+AGG 0.449241 5_3:+31095022 Msa0807840:CDS
GTCCTTCCACTTGCTTCGAC+AGG 0.450079 5_3:-31096127 None:intergenic
GGCGGTCCACCTGGTGGAGG+AGG 0.451744 5_3:-31097217 None:intergenic
TTTATCAGAAAGATAGATCA+TGG 0.452219 5_3:+31099702 Msa0807840:three_prime_UTR
CCTGGTGGACGAGGAGGAGG+AGG 0.452241 5_3:-31097187 None:intergenic
ATAGTCTTCCCGAGGGTGCC+TGG 0.452622 5_3:-31096235 None:intergenic
CCTCCTCCTCCTCGTCCACC+AGG 0.453292 5_3:+31097187 Msa0807840:CDS
GGTGGAGGAGGAGGTCCACC+TGG 0.456329 5_3:-31097205 None:intergenic
AAAGAAGCTTCATGATAGTA+AGG 0.457627 5_3:+31094362 Msa0807840:exon
TCGCTTGTGATTTCGGGCTA+AGG 0.462063 5_3:-31096280 None:intergenic
TTTCAATTTCTTGTCAATCT+CGG 0.462137 5_3:-31095336 None:intergenic
TGACTTGGAGGTTGCTGTTG+TGG 0.462604 5_3:+31095367 Msa0807840:CDS
CCCTTGTCCTCGTTCCGATC+CGG 0.464671 5_3:-31096330 None:intergenic
GATGCTAGGAACAACATGAT+TGG 0.467089 5_3:+31097400 Msa0807840:CDS
CACTTCCTGGTGAAGAAGGA+TGG 0.468336 5_3:-31096379 None:intergenic
TGATAAAATTCGACTAATTG+TGG 0.472841 5_3:-31097307 None:intergenic
GTAGGTAGTGACGATGATCT+TGG 0.473141 5_3:-31099574 None:intergenic
GGTGGACGAGGAGGAGGAGG+AGG 0.475864 5_3:-31097184 None:intergenic
TATCTTCTTCACCAACTTGA+GGG 0.477737 5_3:-31099367 None:intergenic
GTTGGGTCAATGCATGTTTG+AGG 0.480052 5_3:+31096195 Msa0807840:CDS
AGTGTAGCAATCACCACCTT+TGG 0.482526 5_3:+31096629 Msa0807840:CDS
GCCATAAATTGGCCATGGCT+AGG 0.484118 5_3:+31096825 Msa0807840:CDS
AACTTAGTAAAAGCTATGTT+AGG 0.484710 5_3:-31094163 None:intergenic
TTCCTTGTTAGTTTCTTCAA+CGG 0.485679 5_3:+31097366 Msa0807840:CDS
GGAGGTCCACCTGGTGGACG+AGG 0.485982 5_3:-31097196 None:intergenic
TCTTGGACTGCAGAGTGAAA+TGG 0.487052 5_3:+31096055 Msa0807840:intron
GGAGGCGGTCCACCTGGTGG+AGG 0.487730 5_3:-31097220 None:intergenic
TTTGATAGGCCTCTTGGAAG+AGG 0.488859 5_3:-31097250 None:intergenic
GAAAGGGAAGTGAAACTTGA+AGG 0.490463 5_3:+31094993 Msa0807840:CDS
CCTCTTGGAAGAGGCGGTGG+AGG 0.490929 5_3:-31097241 None:intergenic
CTTCTCAGATATTGAAGACC+TGG 0.490941 5_3:+31097641 Msa0807840:CDS
GGTGGAGGAGGCGGTCCACC+TGG 0.493163 5_3:-31097226 None:intergenic
CTTCAAGAAGAACTCACAAA+TGG 0.494267 5_3:+31095152 Msa0807840:CDS
CCATAAATTGGCCATGGCTA+GGG 0.494574 5_3:+31096826 Msa0807840:CDS
GGAGGAATGGATGGAGCAGA+TGG 0.495461 5_3:-31097166 None:intergenic
AAATTTAAAACTAACCAGCT+AGG 0.499615 5_3:-31093924 None:intergenic
TGATGAAACAGAATCCATTT+GGG 0.501425 5_3:-31094231 None:intergenic
GAGTATGAGTGTTAAATCTA+GGG 0.503061 5_3:+31096568 Msa0807840:CDS
GCGTCAGCTAGTGAAGGAAT+TGG 0.504568 5_3:+31094968 Msa0807840:CDS
ACTGTTAAGCAGCTCAATGT+TGG 0.505956 5_3:+31094421 Msa0807840:CDS
AAAGAATCACCAGGCACCCT+CGG 0.506462 5_3:+31096226 Msa0807840:CDS
CCTTCAACAGTGATGAAAGC+AGG 0.508083 5_3:-31094255 None:intergenic
AGGCCTCTTGGAAGAGGCGG+TGG 0.508709 5_3:-31097244 None:intergenic
AGAACTCGTATACCTTCGTT+GGG 0.509500 5_3:+31096178 Msa0807840:CDS
AATTTAAAACTAACCAGCTA+GGG 0.509580 5_3:-31093923 None:intergenic
GATGAAACGGGAAGCAAAGA+AGG 0.511061 5_3:+31097336 Msa0807840:CDS
GTTGTTTAAGCAACAAAAGT+TGG 0.511120 5_3:-31095265 None:intergenic
TTCTCCCATCCTTCTTCACC+AGG 0.512217 5_3:+31096374 Msa0807840:CDS
GTACTATGGTTTGAAGGAGC+AGG 0.512565 5_3:+31095028 Msa0807840:CDS
CTTCCAAGAGGCCTATCAAA+AGG 0.513794 5_3:+31097253 Msa0807840:CDS
AAGGTAAAGCAGATGCACTA+AGG 0.515387 5_3:+31098078 Msa0807840:CDS
CTATCTTCTTCACCAACTTG+AGG 0.515694 5_3:-31099368 None:intergenic
AAGCACTTTGATTGGCCTGA+AGG 0.517950 5_3:+31098059 Msa0807840:CDS
TACCATTAATTCTCTGCAAG+CGG 0.518242 5_3:+31095118 Msa0807840:CDS
GCAATCACCACCTTTGGTCA+AGG 0.521162 5_3:+31096635 Msa0807840:CDS
ACCAACTTGAGGGGCTTGAG+GGG 0.521386 5_3:-31099357 None:intergenic
ACATTGAGAAAAGGCCTACT+CGG 0.522076 5_3:+31097071 Msa0807840:CDS
CTTGAGGCTAACCAAACAAA+AGG 0.522471 5_3:+31095242 Msa0807840:CDS
GGTGGACCTCCTCCTCCACC+AGG 0.523365 5_3:+31097208 Msa0807840:CDS
TTCTGGTCTACAAGTGAAAG+AGG 0.525391 5_3:+31095292 Msa0807840:CDS
AAGAACTCGTATACCTTCGT+TGG 0.526358 5_3:+31096177 Msa0807840:CDS
AAGAATCACCAGGCACCCTC+GGG 0.527391 5_3:+31096227 Msa0807840:CDS
GGAGAGTGATCTAAAAGAAA+AGG 0.532067 5_3:+31096847 Msa0807840:CDS
GCCAGTTCACAAAGGCAACC+AGG 0.533328 5_3:-31097659 None:intergenic
ATTGTTACGAACAAGAGATA+TGG 0.533942 5_3:+31098415 Msa0807840:CDS
AGCTTCATGATAGTAAGGTT+AGG 0.534874 5_3:+31094367 Msa0807840:exon
AGACGCATCAACTGAAGACT+TGG 0.538898 5_3:-31096771 None:intergenic
AGGCCACCTCCTAAACCATC+AGG 0.539960 5_3:+31097100 Msa0807840:CDS
GCAGATGGTATTCCATTCGC+AGG 0.541589 5_3:-31097151 None:intergenic
GCTCAGAACATGGTGAAGAA+AGG 0.542499 5_3:+31094565 Msa0807840:intron
TTGATCCCCTTGACCAAAGG+TGG 0.543107 5_3:-31096642 None:intergenic
AGTTTGCCGACATTGAGAAA+AGG 0.544849 5_3:+31097062 Msa0807840:CDS
CTAAGAAAACATAATCAAGT+AGG 0.544933 5_3:-31099592 None:intergenic
GCCGGATCGGAACGAGGACA+AGG 0.547986 5_3:+31096329 Msa0807840:CDS
CCACCTGATGGTTTAGGAGG+TGG 0.550943 5_3:-31097103 None:intergenic
GGTGGCCTTGGTACCCGAGT+AGG 0.552272 5_3:-31097085 None:intergenic
ACTTCCTGGTGAAGAAGGAT+GGG 0.552850 5_3:-31096378 None:intergenic
TTCTTGATCCCCTTGACCAA+AGG 0.554015 5_3:-31096645 None:intergenic
CAATCACCACCTTTGGTCAA+GGG 0.554925 5_3:+31096636 Msa0807840:CDS
GGCAAACTTTATCTTGCTAA+CGG 0.555409 5_3:-31097047 None:intergenic
TGCATTATCTGGACCTGAGA+AGG 0.555945 5_3:+31098873 Msa0807840:CDS
AATGGTTGCCAAGGCAAAAG+AGG 0.556783 5_3:+31096073 Msa0807840:CDS
CAAGAGATATGGCTATTTCA+CGG 0.556828 5_3:+31098426 Msa0807840:CDS
GAAAGCTGTGAATGACTTGG+AGG 0.559535 5_3:+31095355 Msa0807840:CDS
CAAAATTTATGAAATTGAGA+TGG 0.560166 5_3:+31094917 Msa0807840:CDS
CTTTGATGCAGAGAGCATGA+AGG 0.561581 5_3:+31099304 Msa0807840:CDS
GTCTTCAGTTGATGCGTCTG+TGG 0.566077 5_3:+31096775 Msa0807840:CDS
GGTGATTGCTACACTATCAC+TGG 0.567705 5_3:-31096621 None:intergenic
TCGGGCTAAGGTTCTTGCTG+AGG 0.567719 5_3:-31096268 None:intergenic
ATCTTCTTCACCAACTTGAG+GGG 0.568553 5_3:-31099366 None:intergenic
AAATTTAACATACAGCTAAG+AGG 0.569421 5_3:-31097447 None:intergenic
TTACAGATGATTCTTTCGAA+AGG 0.569506 5_3:+31094637 Msa0807840:CDS
TGAAGACCTGTCGAAGCAAG+TGG 0.572018 5_3:+31096121 Msa0807840:CDS
ACCCCTCAAGCCCCTCAAGT+TGG 0.572221 5_3:+31099356 Msa0807840:CDS
CGGGTAACACATCTGATGCT+AGG 0.574445 5_3:+31097386 Msa0807840:CDS
CGAGGCCACAAAACAAGAGA+AGG 0.574468 5_3:+31094605 Msa0807840:CDS
CAGGTCTTCAATATCTGAGA+AGG 0.575182 5_3:-31097640 None:intergenic
TTTCTTCTGTACAACTAGCA+AGG 0.576094 5_3:+31098818 Msa0807840:CDS
GGAGGAGGCGGTCCACCTGG+TGG 0.576132 5_3:-31097223 None:intergenic
TGAAGAAAATAACGATGAGA+AGG 0.577311 5_3:+31094893 Msa0807840:CDS
TTATGGCGATCTTTATACGC+AGG 0.577520 5_3:-31096809 None:intergenic
CTTATCATCAAGCTTTCAAG+CGG 0.578195 5_3:-31096593 None:intergenic
GCGCGCTGATAGTCTTCCCG+AGG 0.580968 5_3:-31096243 None:intergenic
GCAGAGTGAAATGGTTGCCA+AGG 0.582172 5_3:+31096064 Msa0807840:intron
TCAAATGATCAATCTGAGGA+TGG 0.582360 5_3:+31097004 Msa0807840:CDS
CCACCACCTGATGGTTTAGG+AGG 0.582529 5_3:-31097106 None:intergenic
AATCACCACCTTTGGTCAAG+GGG 0.583931 5_3:+31096637 Msa0807840:CDS
GGACCTCCTCCTCCACCAGG+TGG 0.585473 5_3:+31097211 Msa0807840:CDS
TAGATCACTCTCCCTAGCCA+TGG 0.585978 5_3:-31096837 None:intergenic
GGTCCACCTGGTGGACGAGG+AGG 0.586202 5_3:-31097193 None:intergenic
ATTGAAAGCTGTGAATGACT+TGG 0.586227 5_3:+31095352 Msa0807840:CDS
CGCTGCTGAATCTAGAGTTG+CGG 0.586332 5_3:+31095451 Msa0807840:CDS
AGGTAAAGCAGATGCACTAA+GGG 0.590443 5_3:+31098079 Msa0807840:CDS
CCTCCACCGCCTCTTCCAAG+AGG 0.592482 5_3:+31097241 Msa0807840:CDS
ACTCCTAATACTGCTAGTGC+TGG 0.594001 5_3:+31096686 Msa0807840:CDS
CGCGCTGATAGTCTTCCCGA+GGG 0.595851 5_3:-31096242 None:intergenic
GTCTTCAATATCTGAGAAGG+AGG 0.596746 5_3:-31097637 None:intergenic
AGAGAGTTCTTGATTCTGCA+AGG 0.596913 5_3:+31098904 Msa0807840:CDS
GGAAGAAGAGGAGAAAGAGG+AGG 0.597529 5_3:+31094764 Msa0807840:CDS
AGAATCAAGAACTCTCTAGC+TGG 0.597894 5_3:-31098898 None:intergenic
TGCGAAGAGAGATCTTGAGT+TGG 0.598167 5_3:+31095181 Msa0807840:CDS
CATTGAGAAAAGGCCTACTC+GGG 0.598950 5_3:+31097072 Msa0807840:CDS
GACCTGTCGAAGCAAGTGGA+AGG 0.601916 5_3:+31096125 Msa0807840:CDS
TCAGCTAGTGAAGGAATTGG+AGG 0.602487 5_3:+31094971 Msa0807840:CDS
TAAAGCAGATGCACTAAGGG+AGG 0.603377 5_3:+31098082 Msa0807840:CDS
TAGTGAAGGAATTGGAGGAA+AGG 0.604260 5_3:+31094976 Msa0807840:CDS
GAGAAACACATGCACACACA+AGG 0.606533 5_3:-31094199 None:intergenic
AGATCGCCATAAATTGGCCA+TGG 0.608376 5_3:+31096820 Msa0807840:CDS
GAATATGCCGGATCGGAACG+AGG 0.609152 5_3:+31096323 Msa0807840:CDS
GATGTTAGAATATGCCGGAT+CGG 0.609797 5_3:+31096316 Msa0807840:CDS
TATGGCGATCTTTATACGCA+GGG 0.609835 5_3:-31096808 None:intergenic
CCTCCTAAACCATCAGGTGG+TGG 0.610139 5_3:+31097106 Msa0807840:CDS
CGGATCGGAACGAGGACAAG+GGG 0.610506 5_3:+31096331 Msa0807840:CDS
CTTCAACAGTGATGAAAGCA+GGG 0.611532 5_3:-31094254 None:intergenic
CAGCTGATGTTAGAATATGC+CGG 0.612494 5_3:+31096311 Msa0807840:CDS
GGAGGAGGAGGTCCACCTGG+TGG 0.616417 5_3:-31097202 None:intergenic
CCTCCTCCTCGTCCACCAGG+TGG 0.621777 5_3:+31097190 Msa0807840:CDS
ACAAACTCAAATCCTGCGAA+TGG 0.622026 5_3:+31097139 Msa0807840:CDS
TTCATCTAGCCAGTTCACAA+AGG 0.630833 5_3:-31097667 None:intergenic
GGAGCAGGAATCAGACATTG+TGG 0.630928 5_3:+31095043 Msa0807840:CDS
CTACAAGTGAAAGAGGAGGC+CGG 0.632814 5_3:+31095299 Msa0807840:CDS
CTAACAGAACCACCACCTGA+TGG 0.633052 5_3:-31097115 None:intergenic
ACAAAGACAGATGCAGCTTG+AGG 0.637837 5_3:+31095226 Msa0807840:CDS
GTCTAAAGATCGTCAAGACG+AGG 0.638271 5_3:+31094587 Msa0807840:CDS
ATCCAGAAATTGAAGAAATG+GGG 0.638544 5_3:+31096473 Msa0807840:CDS
ACGATTGCGTCAGCTAGTGA+AGG 0.639024 5_3:+31094962 Msa0807840:CDS
TAAAGGCATGCATACCAGGA+AGG 0.640747 5_3:-31097697 None:intergenic
TAGCCCGAAATCACAAGCGA+AGG 0.642342 5_3:+31096283 Msa0807840:CDS
AGATTCTGGAGTTGTAGGCA+AGG 0.644734 5_3:+31098484 Msa0807840:CDS
AATTACGAACCTGATGAACA+CGG 0.646865 5_3:-31098942 None:intergenic
AAAGGCCTACTCGGGTACCA+AGG 0.646961 5_3:+31097080 Msa0807840:CDS
CCGGATCGGAACGAGGACAA+GGG 0.650130 5_3:+31096330 Msa0807840:CDS
AGGCCTATCAAAAGGAGCAG+CGG 0.652768 5_3:+31097261 Msa0807840:CDS
AATGTTGGAAATTCAAAACC+AGG 0.654067 5_3:+31094436 Msa0807840:CDS
GATAGGCCTCTTGGAAGAGG+CGG 0.658405 5_3:-31097247 None:intergenic
ATTTAAAACTAACCAGCTAG+GGG 0.658526 5_3:-31093922 None:intergenic
GTATGAGCTAAAGAATCACC+AGG 0.658793 5_3:+31096217 Msa0807840:CDS
TGCTAGGAACAACATGATTG+GGG 0.664643 5_3:+31097402 Msa0807840:CDS
ACCCGTTGAAGAAACTAACA+AGG 0.665175 5_3:-31097368 None:intergenic
AGTATGAGTGTTAAATCTAG+GGG 0.665333 5_3:+31096569 Msa0807840:CDS
CAGACATTGTGGAGTTACAA+CGG 0.666939 5_3:+31095054 Msa0807840:CDS
GGTTGCCAAGGCAAAAGAGG+AGG 0.667693 5_3:+31096076 Msa0807840:CDS
ACGGCAGCTGAAAATTAAGA+CGG 0.676456 5_3:+31095073 Msa0807840:CDS
ATTCGACTAATTGTGGAGCA+CGG 0.678192 5_3:-31097300 None:intergenic
TGATGATAAAGCCAATTGTG+TGG 0.678932 5_3:+31094100 Msa0807840:five_prime_UTR
TAGTTCAAATGATCAATCTG+AGG 0.680104 5_3:+31097000 Msa0807840:CDS
CAGCAGCCACCAATAACTAG+AGG 0.681077 5_3:-31094045 None:intergenic
GCAGCTGAAAATTAAGACGG+TGG 0.682047 5_3:+31095076 Msa0807840:CDS
CCACCTCCTAAACCATCAGG+TGG 0.688030 5_3:+31097103 Msa0807840:CDS
GAGTGATCTAAAAGAAAAGG+CGG 0.689350 5_3:+31096850 Msa0807840:CDS
AACATGCATTGACCCAACGA+AGG 0.691991 5_3:-31096190 None:intergenic
TGGTCTACAAGTGAAAGAGG+AGG 0.701170 5_3:+31095295 Msa0807840:CDS
GAGTTTGGGATCATCGACGA+AGG 0.715055 5_3:-31098153 None:intergenic
AAAGCTGATGTAGAAACACA+AGG 0.721363 5_3:+31097576 Msa0807840:CDS
ATATACAGAAGCAAATACTG+AGG 0.727171 5_3:-31099444 None:intergenic
GGAGCTCTCCAATATGACAG+AGG 0.741862 5_3:+31095472 Msa0807840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTTTTATTTATAT+TGG + chr5_3:31094502-31094521 Msa0807840:intron 0.0%
!!! TTTATTTTTATTTATATTGG+CGG + chr5_3:31094505-31094524 Msa0807840:intron 10.0%
!!! TTTTATGTTAGAAATAAATT+TGG + chr5_3:31094709-31094728 Msa0807840:intron 10.0%
!!! TTTTATTATTTTTCTCATTT+TGG + chr5_3:31097478-31097497 Msa0807840:intron 10.0%
!! GTTCTTTAAATTATATTTGA+AGG + chr5_3:31094310-31094329 Msa0807840:five_prime_UTR 15.0%
!! TATTGATATGTATCTTTAAA+TGG + chr5_3:31096000-31096019 Msa0807840:intron 15.0%
!! ATTGATATGTATCTTTAAAT+GGG + chr5_3:31096001-31096020 Msa0807840:intron 15.0%
!! GAGAAAAATAATAAAATAGA+TGG - chr5_3:31097474-31097493 None:intergenic 15.0%
!!! AAATTTTAAAACATACAACA+TGG - chr5_3:31097862-31097881 None:intergenic 15.0%
!! TATCTATACCATAATATAAA+GGG - chr5_3:31097969-31097988 None:intergenic 15.0%
!! AAGTAAAATGATAAATACTA+TGG - chr5_3:31098248-31098267 None:intergenic 15.0%
!! AACATATATATTGTATATAC+TGG - chr5_3:31098680-31098699 None:intergenic 15.0%
!! CATAATAAAAATAACAAAAG+TGG - chr5_3:31098972-31098991 None:intergenic 15.0%
!! ATTCATAGATCAATAAAATA+AGG + chr5_3:31099003-31099022 Msa0807840:intron 15.0%
!!! CATTTTTTTTTTTTACTCAT+GGG - chr5_3:31099112-31099131 None:intergenic 15.0%
!!! TCATTTTTTTTTTTTACTCA+TGG - chr5_3:31099113-31099132 None:intergenic 15.0%
!! ATATGCATAAAAATATTCAG+TGG - chr5_3:31094132-31094151 None:intergenic 20.0%
!! GTTAGAAATAAATTTGGTAA+AGG + chr5_3:31094715-31094734 Msa0807840:intron 20.0%
!!! AAAGTTGTTTAATTTTTGCA+GGG + chr5_3:31094738-31094757 Msa0807840:intron 20.0%
!! CAAAATTTATGAAATTGAGA+TGG + chr5_3:31094917-31094936 Msa0807840:CDS 20.0%
!! AATTCGAATAGATTTACTAA+AGG - chr5_3:31095874-31095893 None:intergenic 20.0%
!!! TTTATTTTAGAAAGTTTAGG+TGG - chr5_3:31096959-31096978 None:intergenic 20.0%
!!! ACCTAAACTTTCTAAAATAA+AGG + chr5_3:31096958-31096977 Msa0807840:CDS 20.0%
!!! TCCTTTATTTTAGAAAGTTT+AGG - chr5_3:31096962-31096981 None:intergenic 20.0%
!! TTTATCAATCATTGATGAAA+CGG + chr5_3:31097323-31097342 Msa0807840:CDS 20.0%
!! GTATCTATACCATAATATAA+AGG - chr5_3:31097970-31097989 None:intergenic 20.0%
!! TTGATTTCCTATGAAATATA+AGG + chr5_3:31098016-31098035 Msa0807840:intron 20.0%
!! AAAATGATAAATACTATGGT+AGG - chr5_3:31098244-31098263 None:intergenic 20.0%
!! AAAAATAGATACACAAAACT+TGG + chr5_3:31098608-31098627 Msa0807840:intron 20.0%
!! AGATCAATAAAATAAGGAAA+AGG + chr5_3:31099009-31099028 Msa0807840:intron 20.0%
!! GATCAATAAAATAAGGAAAA+GGG + chr5_3:31099010-31099029 Msa0807840:intron 20.0%
!! TATTGTTCAAATGTACATTT+GGG - chr5_3:31099155-31099174 None:intergenic 20.0%
!! AATTTCACATCTATATTTAC+AGG - chr5_3:31099731-31099750 None:intergenic 20.0%
!! AATTTAAAACTAACCAGCTA+GGG - chr5_3:31093926-31093945 None:intergenic 25.0%
!! AAATTTAAAACTAACCAGCT+AGG - chr5_3:31093927-31093946 None:intergenic 25.0%
!! CAATCCTTTTTGTTCATTTT+TGG + chr5_3:31094022-31094041 Msa0807840:five_prime_UTR 25.0%
! AACTTAGTAAAAGCTATGTT+AGG - chr5_3:31094166-31094185 None:intergenic 25.0%
!! TTGAAGGAATAATCAGTTTT+GGG + chr5_3:31094271-31094290 Msa0807840:five_prime_UTR 25.0%
!!! AATAATCAGTTTTGGGAAAT+GGG + chr5_3:31094278-31094297 Msa0807840:five_prime_UTR 25.0%
! ATTTGAAGGAATGCATAATT+TGG + chr5_3:31094324-31094343 Msa0807840:five_prime_UTR 25.0%
!!! GAAAGTTGTTTAATTTTTGC+AGG + chr5_3:31094737-31094756 Msa0807840:intron 25.0%
!!! AAGTTGTTTAATTTTTGCAG+GGG + chr5_3:31094739-31094758 Msa0807840:intron 25.0%
! TTTCAATTTCTTGTCAATCT+CGG - chr5_3:31095339-31095358 None:intergenic 25.0%
!!! ATTTTAAAGAAGCTTTGTCT+TGG + chr5_3:31096038-31096057 Msa0807840:intron 25.0%
! TAATCCAGAAATTGAAGAAA+TGG + chr5_3:31096471-31096490 Msa0807840:CDS 25.0%
! AATCCAGAAATTGAAGAAAT+GGG + chr5_3:31096472-31096491 Msa0807840:CDS 25.0%
! TGATAAAATTCGACTAATTG+TGG - chr5_3:31097310-31097329 None:intergenic 25.0%
! TTATCAATCATTGATGAAAC+GGG + chr5_3:31097324-31097343 Msa0807840:CDS 25.0%
! AAATTTAACATACAGCTAAG+AGG - chr5_3:31097450-31097469 None:intergenic 25.0%
! CATTTGTGAAACATGTATAT+AGG + chr5_3:31097551-31097570 Msa0807840:intron 25.0%
!! CTAAGCATGAAATAATTTTG+AGG - chr5_3:31097756-31097775 None:intergenic 25.0%
! TTAGTGTAGATTATATGAGA+AGG + chr5_3:31097772-31097791 Msa0807840:intron 25.0%
!!! TTTTAAAACATACAACATGG+AGG - chr5_3:31097859-31097878 None:intergenic 25.0%
! GTAAAAAACTGTATTGCTAA+AGG + chr5_3:31097883-31097902 Msa0807840:intron 25.0%
! TCATCAACCTTATATTTCAT+AGG - chr5_3:31098026-31098045 None:intergenic 25.0%
! ATATCAAGATCTGATGAAAT+TGG + chr5_3:31098115-31098134 Msa0807840:CDS 25.0%
!! CATTTTACTTACCAAGAAAA+TGG + chr5_3:31098258-31098277 Msa0807840:intron 25.0%
!! ATAGATGTGTAATGTTTTCA+AGG - chr5_3:31098319-31098338 None:intergenic 25.0%
! TAAGTGATATCAAGTTTAAG+AGG + chr5_3:31098355-31098374 Msa0807840:intron 25.0%
! TTAACCAATAGAAATACCAT+TGG + chr5_3:31098519-31098538 Msa0807840:intron 25.0%
!!! TTTTAACTCAAAAGGATTTG+TGG - chr5_3:31098718-31098737 None:intergenic 25.0%
!!! ATGCAATGTTTTAACTCAAA+AGG - chr5_3:31098726-31098745 None:intergenic 25.0%
!!! TTTTTTTTTACTCATGGGAA+TGG - chr5_3:31099107-31099126 None:intergenic 25.0%
! ATTGTTCAAATGTACATTTG+GGG - chr5_3:31099154-31099173 None:intergenic 25.0%
! CTATTGTTCAAATGTACATT+TGG - chr5_3:31099156-31099175 None:intergenic 25.0%
! AGTAGCATTCACAATATAAT+CGG - chr5_3:31099547-31099566 None:intergenic 25.0%
! CTAAGAAAACATAATCAAGT+AGG - chr5_3:31099595-31099614 None:intergenic 25.0%
! TTTATCAGAAAGATAGATCA+TGG + chr5_3:31099702-31099721 Msa0807840:three_prime_UTR 25.0%
! ATTTAAAACTAACCAGCTAG+GGG - chr5_3:31093925-31093944 None:intergenic 30.0%
TGATGAAACAGAATCCATTT+GGG - chr5_3:31094234-31094253 None:intergenic 30.0%
! GTTGAAGGAATAATCAGTTT+TGG + chr5_3:31094270-31094289 Msa0807840:five_prime_UTR 30.0%
!!! GAATAATCAGTTTTGGGAAA+TGG + chr5_3:31094277-31094296 Msa0807840:five_prime_UTR 30.0%
TACTATCATGAAGCTTCTTT+AGG - chr5_3:31094362-31094381 None:intergenic 30.0%
AAAGAAGCTTCATGATAGTA+AGG + chr5_3:31094362-31094381 Msa0807840:exon 30.0%
AATGTTGGAAATTCAAAACC+AGG + chr5_3:31094436-31094455 Msa0807840:CDS 30.0%
TTACAGATGATTCTTTCGAA+AGG + chr5_3:31094637-31094656 Msa0807840:CDS 30.0%
!! AGTTGTTTAATTTTTGCAGG+GGG + chr5_3:31094740-31094759 Msa0807840:intron 30.0%
GATAAAAGGTCTTCAAATTC+TGG - chr5_3:31094846-31094865 None:intergenic 30.0%
! GAATTTGAAGACCTTTTATC+TGG + chr5_3:31094846-31094865 Msa0807840:CDS 30.0%
TGAAGAAAATAACGATGAGA+AGG + chr5_3:31094893-31094912 Msa0807840:CDS 30.0%
GTTGTTTAAGCAACAAAAGT+TGG - chr5_3:31095268-31095287 None:intergenic 30.0%
TTGCTTAAACAACAAGTTTC+TGG + chr5_3:31095275-31095294 Msa0807840:CDS 30.0%
TTCATTATCGAGTTTGAACA+AGG + chr5_3:31095522-31095541 Msa0807840:intron 30.0%
CTGAGTTGTTAAATAATCAG+TGG - chr5_3:31095664-31095683 None:intergenic 30.0%
GTATATTCAACGAAGTTGTT+TGG - chr5_3:31095713-31095732 None:intergenic 30.0%
AAACACTAAAGACACTTTGT+AGG - chr5_3:31095763-31095782 None:intergenic 30.0%
AATATACCAGCATCACAAAA+TGG - chr5_3:31095805-31095824 None:intergenic 30.0%
TTTCTAAATTGTCGTATGCT+TGG - chr5_3:31095848-31095867 None:intergenic 30.0%
ATCCAGAAATTGAAGAAATG+GGG + chr5_3:31096473-31096492 Msa0807840:CDS 30.0%
AAGAACACTAGAATCATCTT+TGG - chr5_3:31096504-31096523 None:intergenic 30.0%
TGAGTATGAGTGTTAAATCT+AGG + chr5_3:31096567-31096586 Msa0807840:CDS 30.0%
GAGTATGAGTGTTAAATCTA+GGG + chr5_3:31096568-31096587 Msa0807840:CDS 30.0%
AGTATGAGTGTTAAATCTAG+GGG + chr5_3:31096569-31096588 Msa0807840:CDS 30.0%
ATCAAGTGACTCACTAAATT+CGG + chr5_3:31096724-31096743 Msa0807840:CDS 30.0%
GTATAAAGATCGCCATAAAT+TGG + chr5_3:31096814-31096833 Msa0807840:CDS 30.0%
TTAGGTGGCAAAGATATATT+AGG - chr5_3:31096944-31096963 None:intergenic 30.0%
TTTGAACTAGCATGAACAAT+TGG - chr5_3:31096989-31097008 None:intergenic 30.0%
TAGTTCAAATGATCAATCTG+AGG + chr5_3:31097000-31097019 Msa0807840:CDS 30.0%
! TTCCTTGTTAGTTTCTTCAA+CGG + chr5_3:31097366-31097385 Msa0807840:CDS 30.0%
! TCTTAAGTCATGACACATTT+TGG + chr5_3:31097505-31097524 Msa0807840:intron 30.0%
!! AATTTTAATGAGAAGCACGA+AGG - chr5_3:31097812-31097831 None:intergenic 30.0%
TTGGAGTTCCCTTTATATTA+TGG + chr5_3:31097958-31097977 Msa0807840:intron 30.0%
TCATAGGAAATCAAATGAGA+TGG - chr5_3:31098010-31098029 None:intergenic 30.0%
GATAAATACTATGGTAGGAA+GGG - chr5_3:31098239-31098258 None:intergenic 30.0%
TGATAAATACTATGGTAGGA+AGG - chr5_3:31098240-31098259 None:intergenic 30.0%
TTACTTACCAAGAAAATGGA+TGG + chr5_3:31098262-31098281 Msa0807840:intron 30.0%
! TAACAAACCATCCATTTTCT+TGG - chr5_3:31098272-31098291 None:intergenic 30.0%
ATTGTTACGAACAAGAGATA+TGG + chr5_3:31098415-31098434 Msa0807840:CDS 30.0%
! AATTTGGAATCCCAATAAAC+TGG + chr5_3:31098456-31098475 Msa0807840:CDS 30.0%
AATCTTGTAGCCAGTTTATT+GGG - chr5_3:31098469-31098488 None:intergenic 30.0%
! TTTTCCTCTCTTATGGAATA+TGG - chr5_3:31098568-31098587 None:intergenic 30.0%
!!! TCAAGTTTTTTCCTCTCTTA+TGG - chr5_3:31098575-31098594 None:intergenic 30.0%
GCTTATTATTAATCACATGC+TGG + chr5_3:31098766-31098785 Msa0807840:intron 30.0%
ATTATTAATCACATGCTGGT+TGG + chr5_3:31098770-31098789 Msa0807840:intron 30.0%
ATTGACTGAGACATGTATTT+AGG + chr5_3:31099033-31099052 Msa0807840:intron 30.0%
CAAACAAGCTTGAAATAACT+TGG - chr5_3:31099079-31099098 None:intergenic 30.0%
! CAGTATTAGAGTGCTATATT+TGG - chr5_3:31099250-31099269 None:intergenic 30.0%
CAAATATAGCACTCTAATAC+TGG + chr5_3:31099248-31099267 Msa0807840:intron 30.0%
!! TGAAGGCTTTTGAAGATTTA+AGG + chr5_3:31099321-31099340 Msa0807840:CDS 30.0%
TGATGAGTATTCTATGTTTC+TGG - chr5_3:31099401-31099420 None:intergenic 30.0%
ATATACAGAAGCAAATACTG+AGG - chr5_3:31099447-31099466 None:intergenic 30.0%
GAGGCCAAAAATGAACAAAA+AGG - chr5_3:31094029-31094048 None:intergenic 35.0%
!!! CATTTTTGGCCTCTAGTTAT+TGG + chr5_3:31094036-31094055 Msa0807840:five_prime_UTR 35.0%
TGATGATAAAGCCAATTGTG+TGG + chr5_3:31094100-31094119 Msa0807840:five_prime_UTR 35.0%
! AGTGGTATTTTCCACACAAT+TGG - chr5_3:31094114-31094133 None:intergenic 35.0%
GCACACACAAGGAAAAAAAA+AGG - chr5_3:31094191-31094210 None:intergenic 35.0%
! TTCTCTTTTTCTGTCCCAAA+TGG + chr5_3:31094217-31094236 Msa0807840:five_prime_UTR 35.0%
GTGATGAAACAGAATCCATT+TGG - chr5_3:31094235-31094254 None:intergenic 35.0%
AGCTTCATGATAGTAAGGTT+AGG + chr5_3:31094367-31094386 Msa0807840:exon 35.0%
!! AAACACATAGAAGAAGTACC+TGG - chr5_3:31094457-31094476 None:intergenic 35.0%
! AAGCAACTTCGTCTACATTT+TGG + chr5_3:31094543-31094562 Msa0807840:intron 35.0%
!!! ATTGACCTTCTCTTGTTTTG+TGG - chr5_3:31094613-31094632 None:intergenic 35.0%
ACTCAATCTCTCCAGATAAA+AGG - chr5_3:31094860-31094879 None:intergenic 35.0%
GAGATTGAGTTATCATTTCC+TGG + chr5_3:31094870-31094889 Msa0807840:CDS 35.0%
!! TCATCGTTATTTTCTTCACC+AGG - chr5_3:31094891-31094910 None:intergenic 35.0%
TACCATTAATTCTCTGCAAG+CGG + chr5_3:31095118-31095137 Msa0807840:CDS 35.0%
CTTCAAGAAGAACTCACAAA+TGG + chr5_3:31095152-31095171 Msa0807840:CDS 35.0%
GTTGGCTAGAAACAAGATAA+AGG + chr5_3:31095199-31095218 Msa0807840:CDS 35.0%
!!! ACAAAAGTTGGCCTTTTGTT+TGG - chr5_3:31095256-31095275 None:intergenic 35.0%
ATTGAAAGCTGTGAATGACT+TGG + chr5_3:31095352-31095371 Msa0807840:CDS 35.0%
! TTTCGAAGTTTTGCATCACT+TGG + chr5_3:31095576-31095595 Msa0807840:intron 35.0%
! CAAAGTGTCTTTAGTGTTTC+AGG + chr5_3:31095764-31095783 Msa0807840:intron 35.0%
! CATAACTTTTGACCACTTCT+CGG - chr5_3:31095945-31095964 None:intergenic 35.0%
TGGAAGGACTTCAAATGAAT+CGG + chr5_3:31096141-31096160 Msa0807840:CDS 35.0%
TTGTCAAAATCTTCACTTCC+TGG - chr5_3:31096395-31096414 None:intergenic 35.0%
TACCCCATTTCTTCAATTTC+TGG - chr5_3:31096478-31096497 None:intergenic 35.0%
! TCACCATCAAGATCTTTTTC+AGG + chr5_3:31096527-31096546 Msa0807840:CDS 35.0%
! ACACTCATACTCATCCTTTT+TGG - chr5_3:31096560-31096579 None:intergenic 35.0%
CTTATCATCAAGCTTTCAAG+CGG - chr5_3:31096596-31096615 None:intergenic 35.0%
GGAGAGTGATCTAAAAGAAA+AGG + chr5_3:31096847-31096866 Msa0807840:CDS 35.0%
GAGTGATCTAAAAGAAAAGG+CGG + chr5_3:31096850-31096869 Msa0807840:CDS 35.0%
AAAGCAAGAGTTCAGAAGTT+TGG + chr5_3:31096875-31096894 Msa0807840:CDS 35.0%
AAGCAAGAGTTCAGAAGTTT+GGG + chr5_3:31096876-31096895 Msa0807840:CDS 35.0%
TCAAATGATCAATCTGAGGA+TGG + chr5_3:31097004-31097023 Msa0807840:CDS 35.0%
GGCAAACTTTATCTTGCTAA+CGG - chr5_3:31097050-31097069 None:intergenic 35.0%
! TCCTTGTTAGTTTCTTCAAC+GGG + chr5_3:31097367-31097386 Msa0807840:CDS 35.0%
ATGCTAGGAACAACATGATT+GGG + chr5_3:31097401-31097420 Msa0807840:CDS 35.0%
AAAGCTGATGTAGAAACACA+AGG + chr5_3:31097576-31097595 Msa0807840:CDS 35.0%
! AGGTGATTTTGTTACGTCAT+TGG + chr5_3:31097596-31097615 Msa0807840:CDS 35.0%
TGATGAGAAATGACACCTAA+AGG - chr5_3:31097717-31097736 None:intergenic 35.0%
! ATATGAGAAGGCATGAAACT+TGG + chr5_3:31097784-31097803 Msa0807840:intron 35.0%
AAAGGTCTGACCAAAATTGA+TGG + chr5_3:31097929-31097948 Msa0807840:intron 35.0%
AAGGTCTGACCAAAATTGAT+GGG + chr5_3:31097930-31097949 Msa0807840:intron 35.0%
!!! CCAAAAGTACCCATCAATTT+TGG - chr5_3:31097942-31097961 None:intergenic 35.0%
!! CCAAAATTGATGGGTACTTT+TGG + chr5_3:31097939-31097958 Msa0807840:intron 35.0%
! CAAGAGATATGGCTATTTCA+CGG + chr5_3:31098426-31098445 Msa0807840:CDS 35.0%
ATTTCACGGTACAGAGAATT+TGG + chr5_3:31098440-31098459 Msa0807840:CDS 35.0%
GAATCTTGTAGCCAGTTTAT+TGG - chr5_3:31098470-31098489 None:intergenic 35.0%
ATAAACTGGCTACAAGATTC+TGG + chr5_3:31098470-31098489 Msa0807840:CDS 35.0%
! CGAACCAATGGTATTTCTAT+TGG - chr5_3:31098526-31098545 None:intergenic 35.0%
! ATACTGGTTATTCGAACCAA+TGG - chr5_3:31098538-31098557 None:intergenic 35.0%
ATGACCATATTCCATAAGAG+AGG + chr5_3:31098561-31098580 Msa0807840:intron 35.0%
TAACTCAAAAGGATTTGTGG+AGG - chr5_3:31098715-31098734 None:intergenic 35.0%
TTTCTTCTGTACAACTAGCA+AGG + chr5_3:31098818-31098837 Msa0807840:CDS 35.0%
AATTACGAACCTGATGAACA+CGG - chr5_3:31098945-31098964 None:intergenic 35.0%
GTTCATCAGGTTCGTAATTT+AGG + chr5_3:31098946-31098965 Msa0807840:intron 35.0%
! TTTTACTCATGGGAATGGAA+AGG - chr5_3:31099102-31099121 None:intergenic 35.0%
TATCTTCTTCACCAACTTGA+GGG - chr5_3:31099370-31099389 None:intergenic 35.0%
! TTTTGGCCTCTAGTTATTGG+TGG + chr5_3:31094039-31094058 Msa0807840:five_prime_UTR 40.0%
CTTCAACAGTGATGAAAGCA+GGG - chr5_3:31094257-31094276 None:intergenic 40.0%
ACTGTTAAGCAGCTCAATGT+TGG + chr5_3:31094421-31094440 Msa0807840:CDS 40.0%
!!! CTACATTTTGGCTCAGAACA+TGG + chr5_3:31094555-31094574 Msa0807840:intron 40.0%
!! TGTTTAATTTTTGCAGGGGG+AGG + chr5_3:31094743-31094762 Msa0807840:intron 40.0%
TAGTGAAGGAATTGGAGGAA+AGG + chr5_3:31094976-31094995 Msa0807840:CDS 40.0%
AGTGAAGGAATTGGAGGAAA+GGG + chr5_3:31094977-31094996 Msa0807840:CDS 40.0%
GAAAGGGAAGTGAAACTTGA+AGG + chr5_3:31094993-31095012 Msa0807840:CDS 40.0%
GGAGAATTGCTTGAGTACTA+TGG + chr5_3:31095014-31095033 Msa0807840:CDS 40.0%
GCTTGAGTACTATGGTTTGA+AGG + chr5_3:31095022-31095041 Msa0807840:CDS 40.0%
CAGACATTGTGGAGTTACAA+CGG + chr5_3:31095054-31095073 Msa0807840:CDS 40.0%
ACGGCAGCTGAAAATTAAGA+CGG + chr5_3:31095073-31095092 Msa0807840:CDS 40.0%
CTTGAGGCTAACCAAACAAA+AGG + chr5_3:31095242-31095261 Msa0807840:CDS 40.0%
TTCTGGTCTACAAGTGAAAG+AGG + chr5_3:31095292-31095311 Msa0807840:CDS 40.0%
! GTCAATCTCGGCATCTTTTA+TGG - chr5_3:31095327-31095346 None:intergenic 40.0%
GAGTCTTACCTCTGTCATAT+TGG - chr5_3:31095483-31095502 None:intergenic 40.0%
!! CAGTGGATTGTCTAAACCAA+GGG - chr5_3:31095647-31095666 None:intergenic 40.0%
!! TCAGTGGATTGTCTAAACCA+AGG - chr5_3:31095648-31095667 None:intergenic 40.0%
!!! GTATTGCCATTTTGTGATGC+TGG + chr5_3:31095796-31095815 Msa0807840:intron 40.0%
GTATTCTTTGTTCCGAGAAG+TGG + chr5_3:31095930-31095949 Msa0807840:intron 40.0%
AAGAACTCGTATACCTTCGT+TGG + chr5_3:31096177-31096196 Msa0807840:CDS 40.0%
AGAACTCGTATACCTTCGTT+GGG + chr5_3:31096178-31096197 Msa0807840:CDS 40.0%
GTATGAGCTAAAGAATCACC+AGG + chr5_3:31096217-31096236 Msa0807840:CDS 40.0%
TTTGCCTTCGCTTGTGATTT+CGG - chr5_3:31096290-31096309 None:intergenic 40.0%
CAGCTGATGTTAGAATATGC+CGG + chr5_3:31096311-31096330 Msa0807840:CDS 40.0%
GATGTTAGAATATGCCGGAT+CGG + chr5_3:31096316-31096335 Msa0807840:CDS 40.0%
CTGCCTGAAAAAGATCTTGA+TGG - chr5_3:31096533-31096552 None:intergenic 40.0%
TTTCAGGCAGTTCTCCAAAA+AGG + chr5_3:31096543-31096562 Msa0807840:CDS 40.0%
! CGCTTGAAAGCTTGATGATA+AGG + chr5_3:31096594-31096613 Msa0807840:CDS 40.0%
CTAGCAGTATTAGGAGTTTC+AGG - chr5_3:31096683-31096702 None:intergenic 40.0%
CTGAAGACTTGGACATCAAA+TGG - chr5_3:31096763-31096782 None:intergenic 40.0%
TATGGCGATCTTTATACGCA+GGG - chr5_3:31096811-31096830 None:intergenic 40.0%
TTATGGCGATCTTTATACGC+AGG - chr5_3:31096812-31096831 None:intergenic 40.0%
AGGTCTATCTCTTTCGATCT+TGG - chr5_3:31096924-31096943 None:intergenic 40.0%
AGTTTGCCGACATTGAGAAA+AGG + chr5_3:31097062-31097081 Msa0807840:CDS 40.0%
! AGTAGGCCTTTTCTCAATGT+CGG - chr5_3:31097071-31097090 None:intergenic 40.0%
ACATTGAGAAAAGGCCTACT+CGG + chr5_3:31097071-31097090 Msa0807840:CDS 40.0%
ACAAACTCAAATCCTGCGAA+TGG + chr5_3:31097139-31097158 Msa0807840:CDS 40.0%
ATTCGACTAATTGTGGAGCA+CGG - chr5_3:31097303-31097322 None:intergenic 40.0%
ACCCGTTGAAGAAACTAACA+AGG - chr5_3:31097371-31097390 None:intergenic 40.0%
GATGCTAGGAACAACATGAT+TGG + chr5_3:31097400-31097419 Msa0807840:CDS 40.0%
TGCTAGGAACAACATGATTG+GGG + chr5_3:31097402-31097421 Msa0807840:CDS 40.0%
GTCTTCAATATCTGAGAAGG+AGG - chr5_3:31097640-31097659 None:intergenic 40.0%
CAGGTCTTCAATATCTGAGA+AGG - chr5_3:31097643-31097662 None:intergenic 40.0%
CTTCTCAGATATTGAAGACC+TGG + chr5_3:31097641-31097660 Msa0807840:CDS 40.0%
TTCATCTAGCCAGTTCACAA+AGG - chr5_3:31097670-31097689 None:intergenic 40.0%
AGATGAAGAACTTTCCTTCC+TGG + chr5_3:31097683-31097702 Msa0807840:CDS 40.0%
ATTTCAACCATTCACATCCG+AGG + chr5_3:31097829-31097848 Msa0807840:intron 40.0%
! TACAACATGGAGGTTTTCCT+CGG - chr5_3:31097849-31097868 None:intergenic 40.0%
! CTGTCTTGAAGCACTTTGAT+TGG + chr5_3:31098051-31098070 Msa0807840:CDS 40.0%
AAGGTAAAGCAGATGCACTA+AGG + chr5_3:31098078-31098097 Msa0807840:CDS 40.0%
AGGTAAAGCAGATGCACTAA+GGG + chr5_3:31098079-31098098 Msa0807840:CDS 40.0%
! GGTTTGAAACATTTGCAGAG+TGG + chr5_3:31098376-31098395 Msa0807840:intron 40.0%
!! CTACAAGATTCTGGAGTTGT+AGG + chr5_3:31098479-31098498 Msa0807840:CDS 40.0%
GGAATATGGTCATAGCATAC+TGG - chr5_3:31098554-31098573 None:intergenic 40.0%
AGAATCAAGAACTCTCTAGC+TGG - chr5_3:31098901-31098920 None:intergenic 40.0%
AGAGAGTTCTTGATTCTGCA+AGG + chr5_3:31098904-31098923 Msa0807840:CDS 40.0%
! TTTTGCTTTCCGTGTTCATC+AGG + chr5_3:31098933-31098952 Msa0807840:CDS 40.0%
GTTCAAATGTACATTTGGGG+AGG - chr5_3:31099151-31099170 None:intergenic 40.0%
TTCGTCTTTGTGAGAACACT+TGG - chr5_3:31099182-31099201 None:intergenic 40.0%
! ATACTGGTGCGAAACTCTTT+TGG + chr5_3:31099264-31099283 Msa0807840:intron 40.0%
!!! CTCTTTTGGTTTCAGTTTGC+AGG + chr5_3:31099278-31099297 Msa0807840:intron 40.0%
!!! TTTTGGTTTCAGTTTGCAGG+AGG + chr5_3:31099281-31099300 Msa0807840:intron 40.0%
ATCTTCTTCACCAACTTGAG+GGG - chr5_3:31099369-31099388 None:intergenic 40.0%
CTATCTTCTTCACCAACTTG+AGG - chr5_3:31099371-31099390 None:intergenic 40.0%
ATCAATCTTGTTCCCCTAGC+TGG + chr5_3:31093910-31093929 Msa0807840:five_prime_UTR 45.0%
GAGAAACACATGCACACACA+AGG - chr5_3:31094202-31094221 None:intergenic 45.0%
CCTTCAACAGTGATGAAAGC+AGG - chr5_3:31094258-31094277 None:intergenic 45.0%
CCTGCTTTCATCACTGTTGA+AGG + chr5_3:31094255-31094274 Msa0807840:five_prime_UTR 45.0%
GACGAAGTTGCTTAGTTCGT+AGG - chr5_3:31094536-31094555 None:intergenic 45.0%
GCTCAGAACATGGTGAAGAA+AGG + chr5_3:31094565-31094584 Msa0807840:intron 45.0%
GTCTAAAGATCGTCAAGACG+AGG + chr5_3:31094587-31094606 Msa0807840:CDS 45.0%
TCAGCTAGTGAAGGAATTGG+AGG + chr5_3:31094971-31094990 Msa0807840:CDS 45.0%
GTACTATGGTTTGAAGGAGC+AGG + chr5_3:31095028-31095047 Msa0807840:CDS 45.0%
GCAGCTGAAAATTAAGACGG+TGG + chr5_3:31095076-31095095 Msa0807840:CDS 45.0%
CTCCGCTTGCAGAGAATTAA+TGG - chr5_3:31095123-31095142 None:intergenic 45.0%
TGCGAAGAGAGATCTTGAGT+TGG + chr5_3:31095181-31095200 Msa0807840:CDS 45.0%
ACAAAGACAGATGCAGCTTG+AGG + chr5_3:31095226-31095245 Msa0807840:CDS 45.0%
TGGTCTACAAGTGAAAGAGG+AGG + chr5_3:31095295-31095314 Msa0807840:CDS 45.0%
! GAAAGCTGTGAATGACTTGG+AGG + chr5_3:31095355-31095374 Msa0807840:CDS 45.0%
! TTGCTGTTGTGGAGCTTAAG+AGG + chr5_3:31095378-31095397 Msa0807840:CDS 45.0%
! CATCACTCTTTTGTCACCCT+TGG + chr5_3:31095628-31095647 Msa0807840:intron 45.0%
TCTTGGACTGCAGAGTGAAA+TGG + chr5_3:31096055-31096074 Msa0807840:intron 45.0%
AATGGTTGCCAAGGCAAAAG+AGG + chr5_3:31096073-31096092 Msa0807840:CDS 45.0%
! AACATGCATTGACCCAACGA+AGG - chr5_3:31096193-31096212 None:intergenic 45.0%
GTTGGGTCAATGCATGTTTG+AGG + chr5_3:31096195-31096214 Msa0807840:CDS 45.0%
TTGCCTTCGCTTGTGATTTC+GGG - chr5_3:31096289-31096308 None:intergenic 45.0%
ACTTCCTGGTGAAGAAGGAT+GGG - chr5_3:31096381-31096400 None:intergenic 45.0%
TCTTCACTTCCTGGTGAAGA+AGG - chr5_3:31096386-31096405 None:intergenic 45.0%
GGTGATTGCTACACTATCAC+TGG - chr5_3:31096624-31096643 None:intergenic 45.0%
AGTGTAGCAATCACCACCTT+TGG + chr5_3:31096629-31096648 Msa0807840:CDS 45.0%
CAATCACCACCTTTGGTCAA+GGG + chr5_3:31096636-31096655 Msa0807840:CDS 45.0%
AATCACCACCTTTGGTCAAG+GGG + chr5_3:31096637-31096656 Msa0807840:CDS 45.0%
TTCTTGATCCCCTTGACCAA+AGG - chr5_3:31096648-31096667 None:intergenic 45.0%
ACTCCTAATACTGCTAGTGC+TGG + chr5_3:31096686-31096705 Msa0807840:CDS 45.0%
AGACCAGCACTAGCAGTATT+AGG - chr5_3:31096692-31096711 None:intergenic 45.0%
AGACGCATCAACTGAAGACT+TGG - chr5_3:31096774-31096793 None:intergenic 45.0%
AGATCGCCATAAATTGGCCA+TGG + chr5_3:31096820-31096839 Msa0807840:CDS 45.0%
CCATAAATTGGCCATGGCTA+GGG + chr5_3:31096826-31096845 Msa0807840:CDS 45.0%
CATTGAGAAAAGGCCTACTC+GGG + chr5_3:31097072-31097091 Msa0807840:CDS 45.0%
TTTGATAGGCCTCTTGGAAG+AGG - chr5_3:31097253-31097272 None:intergenic 45.0%
CTTCCAAGAGGCCTATCAAA+AGG + chr5_3:31097253-31097272 Msa0807840:CDS 45.0%
GATGAAACGGGAAGCAAAGA+AGG + chr5_3:31097336-31097355 Msa0807840:CDS 45.0%
! TAAAGGCATGCATACCAGGA+AGG - chr5_3:31097700-31097719 None:intergenic 45.0%
TTCCTGGTATGCATGCCTTT+AGG + chr5_3:31097699-31097718 Msa0807840:intron 45.0%
! AGGTTTTCCTCGGATGTGAA+TGG - chr5_3:31097839-31097858 None:intergenic 45.0%
!! AAGCACTTTGATTGGCCTGA+AGG + chr5_3:31098059-31098078 Msa0807840:CDS 45.0%
AGTGCATCTGCTTTACCTTC+AGG - chr5_3:31098077-31098096 None:intergenic 45.0%
TAAAGCAGATGCACTAAGGG+AGG + chr5_3:31098082-31098101 Msa0807840:CDS 45.0%
GCAGCTTCACATGAGAGTTT+GGG - chr5_3:31098170-31098189 None:intergenic 45.0%
AGCAGCTTCACATGAGAGTT+TGG - chr5_3:31098171-31098190 None:intergenic 45.0%
ACTATGGTAGGAAGGGAAAG+AGG - chr5_3:31098232-31098251 None:intergenic 45.0%
!! AGATTCTGGAGTTGTAGGCA+AGG + chr5_3:31098484-31098503 Msa0807840:CDS 45.0%
TGCATTATCTGGACCTGAGA+AGG + chr5_3:31098873-31098892 Msa0807840:CDS 45.0%
! CTTTGATGCAGAGAGCATGA+AGG + chr5_3:31099304-31099323 Msa0807840:CDS 45.0%
GTAGGTAGTGACGATGATCT+TGG - chr5_3:31099577-31099596 None:intergenic 45.0%
!!! AAATATTTATATCAATATTT+TGG + chr5_3:31095605-31095624 Msa0807840:intron 5.0%
!! TTGTAAAAAAAAAAAAAAAA+AGG + chr5_3:31097911-31097930 Msa0807840:intron 5.0%
CAGCAGCCACCAATAACTAG+AGG - chr5_3:31094048-31094067 None:intergenic 50.0%
CGAGGCCACAAAACAAGAGA+AGG + chr5_3:31094605-31094624 Msa0807840:CDS 50.0%
GGAGGAAGAAGAGGAGAAAG+AGG + chr5_3:31094761-31094780 Msa0807840:CDS 50.0%
GGAAGAAGAGGAGAAAGAGG+AGG + chr5_3:31094764-31094783 Msa0807840:CDS 50.0%
ACGATTGCGTCAGCTAGTGA+AGG + chr5_3:31094962-31094981 Msa0807840:CDS 50.0%
GCGTCAGCTAGTGAAGGAAT+TGG + chr5_3:31094968-31094987 Msa0807840:CDS 50.0%
GGAGCAGGAATCAGACATTG+TGG + chr5_3:31095043-31095062 Msa0807840:CDS 50.0%
CTACAAGTGAAAGAGGAGGC+CGG + chr5_3:31095299-31095318 Msa0807840:CDS 50.0%
! CTCGGCATCTTTTATGGCAC+CGG - chr5_3:31095321-31095340 None:intergenic 50.0%
! TGACTTGGAGGTTGCTGTTG+TGG + chr5_3:31095367-31095386 Msa0807840:CDS 50.0%
! CGCTGCTGAATCTAGAGTTG+CGG + chr5_3:31095451-31095470 Msa0807840:CDS 50.0%
GGAGCTCTCCAATATGACAG+AGG + chr5_3:31095472-31095491 Msa0807840:CDS 50.0%
GCAGAGTGAAATGGTTGCCA+AGG + chr5_3:31096064-31096083 Msa0807840:intron 50.0%
! ACTGACCTCCTCTTTTGCCT+TGG - chr5_3:31096084-31096103 None:intergenic 50.0%
GGTCTTCATTTGCGTGTCTC+AGG - chr5_3:31096109-31096128 None:intergenic 50.0%
TGAAGACCTGTCGAAGCAAG+TGG + chr5_3:31096121-31096140 Msa0807840:CDS 50.0%
AAAGAATCACCAGGCACCCT+CGG + chr5_3:31096226-31096245 Msa0807840:CDS 50.0%
TCGCTTGTGATTTCGGGCTA+AGG - chr5_3:31096283-31096302 None:intergenic 50.0%
TAGCCCGAAATCACAAGCGA+AGG + chr5_3:31096283-31096302 Msa0807840:CDS 50.0%
TTCTCCCATCCTTCTTCACC+AGG + chr5_3:31096374-31096393 Msa0807840:CDS 50.0%
CACTTCCTGGTGAAGAAGGA+TGG - chr5_3:31096382-31096401 None:intergenic 50.0%
GCAATCACCACCTTTGGTCA+AGG + chr5_3:31096635-31096654 Msa0807840:CDS 50.0%
TTGATCCCCTTGACCAAAGG+TGG - chr5_3:31096645-31096664 None:intergenic 50.0%
! GTCTTCAGTTGATGCGTCTG+TGG + chr5_3:31096775-31096794 Msa0807840:CDS 50.0%
GCCATAAATTGGCCATGGCT+AGG + chr5_3:31096825-31096844 Msa0807840:CDS 50.0%
CCCTAGCCATGGCCAATTTA+TGG - chr5_3:31096829-31096848 None:intergenic 50.0%
TAGATCACTCTCCCTAGCCA+TGG - chr5_3:31096840-31096859 None:intergenic 50.0%
GAACCACCACCTGATGGTTT+AGG - chr5_3:31097112-31097131 None:intergenic 50.0%
CTAACAGAACCACCACCTGA+TGG - chr5_3:31097118-31097137 None:intergenic 50.0%
GCAGATGGTATTCCATTCGC+AGG - chr5_3:31097154-31097173 None:intergenic 50.0%
! GCTCCTTTTGATAGGCCTCT+TGG - chr5_3:31097259-31097278 None:intergenic 50.0%
AGGCCTATCAAAAGGAGCAG+CGG + chr5_3:31097261-31097280 Msa0807840:CDS 50.0%
! CATCCGCTGCTCCTTTTGAT+AGG - chr5_3:31097267-31097286 None:intergenic 50.0%
CGGGTAACACATCTGATGCT+AGG + chr5_3:31097386-31097405 Msa0807840:CDS 50.0%
ACCTGGTTGCCTTTGTGAAC+TGG + chr5_3:31097658-31097677 Msa0807840:CDS 50.0%
! CACCTAAAGGCATGCATACC+AGG - chr5_3:31097704-31097723 None:intergenic 50.0%
! GAGTTTGGGATCATCGACGA+AGG - chr5_3:31098156-31098175 None:intergenic 50.0%
! TCTCTAGCTGGTTCCTTCTC+AGG - chr5_3:31098889-31098908 None:intergenic 50.0%
TTTGCAGGGGGAGGAAGAAG+AGG + chr5_3:31094752-31094771 Msa0807840:intron 55.0%
GGTTGCCAAGGCAAAAGAGG+AGG + chr5_3:31096076-31096095 Msa0807840:CDS 55.0%
GACCTGTCGAAGCAAGTGGA+AGG + chr5_3:31096125-31096144 Msa0807840:CDS 55.0%
GTCCTTCCACTTGCTTCGAC+AGG - chr5_3:31096130-31096149 None:intergenic 55.0%
AAGAATCACCAGGCACCCTC+GGG + chr5_3:31096227-31096246 Msa0807840:CDS 55.0%
TCGGGCTAAGGTTCTTGCTG+AGG - chr5_3:31096271-31096290 None:intergenic 55.0%
GAATATGCCGGATCGGAACG+AGG + chr5_3:31096323-31096342 Msa0807840:CDS 55.0%
AAAGGCCTACTCGGGTACCA+AGG + chr5_3:31097080-31097099 Msa0807840:CDS 55.0%
GATGGTTTAGGAGGTGGCCT+TGG - chr5_3:31097100-31097119 None:intergenic 55.0%
AGGCCACCTCCTAAACCATC+AGG + chr5_3:31097100-31097119 Msa0807840:CDS 55.0%
CCACCTGATGGTTTAGGAGG+TGG - chr5_3:31097106-31097125 None:intergenic 55.0%
CCACCTCCTAAACCATCAGG+TGG + chr5_3:31097103-31097122 Msa0807840:CDS 55.0%
CCACCACCTGATGGTTTAGG+AGG - chr5_3:31097109-31097128 None:intergenic 55.0%
CCTCCTAAACCATCAGGTGG+TGG + chr5_3:31097106-31097125 Msa0807840:CDS 55.0%
GGAGGAATGGATGGAGCAGA+TGG - chr5_3:31097169-31097188 None:intergenic 55.0%
GATAGGCCTCTTGGAAGAGG+CGG - chr5_3:31097250-31097269 None:intergenic 55.0%
GCCAGTTCACAAAGGCAACC+AGG - chr5_3:31097662-31097681 None:intergenic 55.0%
ACCAACTTGAGGGGCTTGAG+GGG - chr5_3:31099360-31099379 None:intergenic 55.0%
CACCAACTTGAGGGGCTTGA+GGG - chr5_3:31099361-31099380 None:intergenic 55.0%
TCACCAACTTGAGGGGCTTG+AGG - chr5_3:31099362-31099381 None:intergenic 55.0%
!! ATAGTCTTCCCGAGGGTGCC+TGG - chr5_3:31096238-31096257 None:intergenic 60.0%
! CGCGCTGATAGTCTTCCCGA+GGG - chr5_3:31096245-31096264 None:intergenic 60.0%
CCCTTGTCCTCGTTCCGATC+CGG - chr5_3:31096333-31096352 None:intergenic 60.0%
CCGGATCGGAACGAGGACAA+GGG + chr5_3:31096330-31096349 Msa0807840:CDS 60.0%
CGGATCGGAACGAGGACAAG+GGG + chr5_3:31096331-31096350 Msa0807840:CDS 60.0%
GGAGGAGGAGGAGGAATGGA+TGG - chr5_3:31097178-31097197 None:intergenic 60.0%
ACGAGGAGGAGGAGGAGGAA+TGG - chr5_3:31097182-31097201 None:intergenic 60.0%
CTTGAGGGGCTTGAGGGGTT+TGG - chr5_3:31099355-31099374 None:intergenic 60.0%
ACCCCTCAAGCCCCTCAAGT+TGG + chr5_3:31099356-31099375 Msa0807840:CDS 60.0%
! GCGCGCTGATAGTCTTCCCG+AGG - chr5_3:31096246-31096265 None:intergenic 65.0%
GCCGGATCGGAACGAGGACA+AGG + chr5_3:31096329-31096348 Msa0807840:CDS 65.0%
! GGTGGCCTTGGTACCCGAGT+AGG - chr5_3:31097088-31097107 None:intergenic 65.0%
CTTGGAAGAGGCGGTGGAGG+AGG - chr5_3:31097241-31097260 None:intergenic 65.0%
CCTCTTGGAAGAGGCGGTGG+AGG - chr5_3:31097244-31097263 None:intergenic 65.0%
CCTCCACCGCCTCTTCCAAG+AGG + chr5_3:31097241-31097260 Msa0807840:CDS 65.0%
AGGCCTCTTGGAAGAGGCGG+TGG - chr5_3:31097247-31097266 None:intergenic 65.0%
GGTGGACGAGGAGGAGGAGG+AGG - chr5_3:31097187-31097206 None:intergenic 70.0%
! CCTGGTGGACGAGGAGGAGG+AGG - chr5_3:31097190-31097209 None:intergenic 70.0%
CCTCCTCCTCCTCGTCCACC+AGG + chr5_3:31097187-31097206 Msa0807840:CDS 70.0%
! CCACCTGGTGGACGAGGAGG+AGG - chr5_3:31097193-31097212 None:intergenic 70.0%
CCTCCTCCTCGTCCACCAGG+TGG + chr5_3:31097190-31097209 Msa0807840:CDS 70.0%
! GGTCCACCTGGTGGACGAGG+AGG - chr5_3:31097196-31097215 None:intergenic 70.0%
! GGAGGTCCACCTGGTGGACG+AGG - chr5_3:31097199-31097218 None:intergenic 70.0%
GGAGGAGGAGGTCCACCTGG+TGG - chr5_3:31097205-31097224 None:intergenic 70.0%
GGTGGAGGAGGAGGTCCACC+TGG - chr5_3:31097208-31097227 None:intergenic 70.0%
GGTGGACCTCCTCCTCCACC+AGG + chr5_3:31097208-31097227 Msa0807840:CDS 70.0%
GGACCTCCTCCTCCACCAGG+TGG + chr5_3:31097211-31097230 Msa0807840:CDS 70.0%
GGTCCACCTGGTGGAGGAGG+AGG - chr5_3:31097217-31097236 None:intergenic 70.0%
GGAAGAGGCGGTGGAGGAGG+CGG - chr5_3:31097238-31097257 None:intergenic 70.0%
GGCGGTCCACCTGGTGGAGG+AGG - chr5_3:31097220-31097239 None:intergenic 75.0%
GGAGGCGGTCCACCTGGTGG+AGG - chr5_3:31097223-31097242 None:intergenic 75.0%
GGAGGAGGCGGTCCACCTGG+TGG - chr5_3:31097226-31097245 None:intergenic 75.0%
GGTGGAGGAGGCGGTCCACC+TGG - chr5_3:31097229-31097248 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31093871 31099754 31093871 ID=Msa0807840;Name=Msa0807840
chr5_3 mRNA 31093871 31099754 31093871 ID=Msa0807840-mRNA-1;Parent=Msa0807840;Name=Msa0807840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=502|1|1|1|1|1|9|345|997
chr5_3 exon 31093871 31094457 31093871 ID=Msa0807840-mRNA-1:exon:10347;Parent=Msa0807840-mRNA-1
chr5_3 exon 31094571 31094668 31094571 ID=Msa0807840-mRNA-1:exon:10348;Parent=Msa0807840-mRNA-1
chr5_3 exon 31094759 31095493 31094759 ID=Msa0807840-mRNA-1:exon:10349;Parent=Msa0807840-mRNA-1
chr5_3 exon 31096068 31097456 31096068 ID=Msa0807840-mRNA-1:exon:10350;Parent=Msa0807840-mRNA-1
chr5_3 exon 31097573 31097704 31097573 ID=Msa0807840-mRNA-1:exon:10351;Parent=Msa0807840-mRNA-1
chr5_3 exon 31098038 31098219 31098038 ID=Msa0807840-mRNA-1:exon:10352;Parent=Msa0807840-mRNA-1
chr5_3 exon 31098394 31098505 31098394 ID=Msa0807840-mRNA-1:exon:10353;Parent=Msa0807840-mRNA-1
chr5_3 exon 31098811 31098954 31098811 ID=Msa0807840-mRNA-1:exon:10354;Parent=Msa0807840-mRNA-1
chr5_3 exon 31099293 31099754 31099293 ID=Msa0807840-mRNA-1:exon:10355;Parent=Msa0807840-mRNA-1
chr5_3 five_prime_UTR 31093871 31094372 31093871 ID=Msa0807840-mRNA-1:five_prime_utr;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31094373 31094457 31094373 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31094571 31094668 31094571 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31094759 31095493 31094759 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31096068 31097456 31096068 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31097573 31097704 31097573 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31098038 31098219 31098038 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31098394 31098505 31098394 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31098811 31098954 31098811 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 CDS 31099293 31099409 31099293 ID=Msa0807840-mRNA-1:cds;Parent=Msa0807840-mRNA-1
chr5_3 three_prime_UTR 31099410 31099754 31099410 ID=Msa0807840-mRNA-1:three_prime_utr;Parent=Msa0807840-mRNA-1
Gene Sequence

>Msa0807840

ATGATAGTAAGGTTAGGACTCATTGTTGCTGCTTCATTAGCAGCTTTTACTGTTAAGCAGCTCAATGTTGGAAATTCAAAACCAGAACATGGTGAAGAAAGGTCTAAAGATCGTCAAGACGAGGCCACAAAACAAGAGAAGGTCAATAGTATTACAGATGATTCTTTCGAAAGGAATGATGATGGGGAGGAAGAAGAGGAGAAAGAGGAGGTTAAATTAATTAGCAGCATAATTAATCGAGCGAATGATTTTGAAGATGATATTCTACCAGAATTTGAAGACCTTTTATCTGGAGAGATTGAGTTATCATTTCCTGGTGAAGAAAATAACGATGAGAAGGACAAAATTTATGAAATTGAGATGGCATACAATGATAGTGAATTAGAACGATTGCGTCAGCTAGTGAAGGAATTGGAGGAAAGGGAAGTGAAACTTGAAGGAGAATTGCTTGAGTACTATGGTTTGAAGGAGCAGGAATCAGACATTGTGGAGTTACAACGGCAGCTGAAAATTAAGACGGTGGAAATTGACATGCTTAATATTACCATTAATTCTCTGCAAGCGGAGCGAAAGAAGCTTCAAGAAGAACTCACAAATGGAGCTTCTGCGAAGAGAGATCTTGAGTTGGCTAGAAACAAGATAAAGGAGCTACAAAGACAGATGCAGCTTGAGGCTAACCAAACAAAAGGCCAACTTTTGTTGCTTAAACAACAAGTTTCTGGTCTACAAGTGAAAGAGGAGGCCGGTGCCATAAAAGATGCCGAGATTGACAAGAAATTGAAAGCTGTGAATGACTTGGAGGTTGCTGTTGTGGAGCTTAAGAGGAAAAATAAAGAACTTCAATACGAGAAGCGAGAGCTAACTGTTAAACTCAACGCTGCTGAATCTAGAGTTGCGGAGCTCTCCAATATGACAGAGAGTGAAATGGTTGCCAAGGCAAAAGAGGAGGTCAGTAACCTGAGACACGCAAATGAAGACCTGTCGAAGCAAGTGGAAGGACTTCAAATGAATCGGTTTAGCGAAGTTGAAGAACTCGTATACCTTCGTTGGGTCAATGCATGTTTGAGGTATGAGCTAAAGAATCACCAGGCACCCTCGGGAAGACTATCAGCGCGCGACCTCAGCAAGAACCTTAGCCCGAAATCACAAGCGAAGGCAAAGCAGCTGATGTTAGAATATGCCGGATCGGAACGAGGACAAGGGGACACAGATCTTGAAAGCAACTTCTCCCATCCTTCTTCACCAGGAAGTGAAGATTTTGACAATGCTTCTATTGACAGCTTTTCTAGCAAATATAGTAGTGTTAGCAAGAAAACTAGCTTAATCCAGAAATTGAAGAAATGGGGTAAAACCAAAGATGATTCTAGTGTTCTTTCATCACCATCAAGATCTTTTTCAGGCAGTTCTCCAAAAAGGATGAGTATGAGTGTTAAATCTAGGGGTCCGCTTGAAAGCTTGATGATAAGGAATGCCAGTGATAGTGTAGCAATCACCACCTTTGGTCAAGGGGATCAAGAATCTATTTATTCTCCTGAAACTCCTAATACTGCTAGTGCTGGTCTAAGAAGAGTTACATCAAGTGACTCACTAAATTCGGTTGCTTCTTCATTCCATTTGATGTCCAAGTCTTCAGTTGATGCGTCTGTGGACGAAAAGTACCCTGCGTATAAAGATCGCCATAAATTGGCCATGGCTAGGGAGAGTGATCTAAAAGAAAAGGCGGAAAAAGCAAGAGTTCAGAAGTTTGGGAACAGTTCAAATTTGAATATGACCAAGATCGAAAGAGATAGACCTAATATATCTTTGCCACCTAAACTTTCTAAAATAAAGGAGAAGCCAATTGTTCATGCTAGTTCAAATGATCAATCTGAGGATGGAAAGAATGTTGAAAATCAAACCGTTAGCAAGATAAAGTTTGCCGACATTGAGAAAAGGCCTACTCGGGTACCAAGGCCACCTCCTAAACCATCAGGTGGTGGTTCTGTTAGCACAAACTCAAATCCTGCGAATGGAATACCATCTGCTCCATCCATTCCTCCTCCTCCTCCTCGTCCACCAGGTGGACCTCCTCCTCCACCAGGTGGACCGCCTCCTCCACCGCCTCTTCCAAGAGGCCTATCAAAAGGAGCAGCGGATGACGACAAAGTTCACCGTGCTCCACAATTAGTCGAATTTTATCAATCATTGATGAAACGGGAAGCAAAGAAGGATACTTCTTCCTTGTTAGTTTCTTCAACGGGTAACACATCTGATGCTAGGAACAACATGATTGGGGAAATTGAGAATAGATCAACATTCCTCTTAGCTGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTTACGTCATTGGCAACTGAAGTTAGAGCATCCTCCTTCTCAGATATTGAAGACCTGGTTGCCTTTGTGAACTGGCTAGATGAAGAACTTTCCTTCCTGGTTGATGAACGAGCTGTCTTGAAGCACTTTGATTGGCCTGAAGGTAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAAGATCTGATGAAATTGGAGAATCGAGTCTCTACCTTCGTCGATGATCCCAAACTCTCATGTGAAGCTGCTCTCAAGAAAATGTACTCATTGCTTGAAAAAGTGGAGCAAAGCGTATATGCATTGTTACGAACAAGAGATATGGCTATTTCACGGTACAGAGAATTTGGAATCCCAATAAACTGGCTACAAGATTCTGGAGTTGTAGGCAAGATAAAGCTTTCTTCTGTACAACTAGCAAGGAAGTATATGAAACGTGTTGCATCTGAACTTGATGCATTATCTGGACCTGAGAAGGAACCAGCTAGAGAGTTCTTGATTCTGCAAGGCGTTCGTTTTGCTTTCCGTGTTCATCAGTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGATTTAAGGAGTCGAATCCAAACCCCTCAAGCCCCTCAAGTTGGTGAAGAAGATAGTAAACAACCAGAAACATAG
Protein sequence

>Msa0807840

MIVRLGLIVAASLAAFTVKQLNVGNSKPEHGEERSKDRQDEATKQEKVNSITDDSFERNDDGEEEEEKEEVKLISSIINRANDFEDDILPEFEDLLSGEIELSFPGEENNDEKDKIYEIEMAYNDSELERLRQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELTNGASAKRDLELARNKIKELQRQMQLEANQTKGQLLLLKQQVSGLQVKEEAGAIKDAEIDKKLKAVNDLEVAVVELKRKNKELQYEKRELTVKLNAAESRVAELSNMTESEMVAKAKEEVSNLRHANEDLSKQVEGLQMNRFSEVEELVYLRWVNACLRYELKNHQAPSGRLSARDLSKNLSPKSQAKAKQLMLEYAGSERGQGDTDLESNFSHPSSPGSEDFDNASIDSFSSKYSSVSKKTSLIQKLKKWGKTKDDSSVLSSPSRSFSGSSPKRMSMSVKSRGPLESLMIRNASDSVAITTFGQGDQESIYSPETPNTASAGLRRVTSSDSLNSVASSFHLMSKSSVDASVDEKYPAYKDRHKLAMARESDLKEKAEKARVQKFGNSSNLNMTKIERDRPNISLPPKLSKIKEKPIVHASSNDQSEDGKNVENQTVSKIKFADIEKRPTRVPRPPPKPSGGGSVSTNSNPANGIPSAPSIPPPPPRPPGGPPPPPGGPPPPPPLPRGLSKGAADDDKVHRAPQLVEFYQSLMKREAKKDTSSLLVSSTGNTSDARNNMIGEIENRSTFLLAVKADVETQGDFVTSLATEVRASSFSDIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLENRVSTFVDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPINWLQDSGVVGKIKLSSVQLARKYMKRVASELDALSGPEKEPAREFLILQGVRFAFRVHQFAGGFDAESMKAFEDLRSRIQTPQAPQVGEEDSKQPET*