Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228320 | XP_003604116.1 | 90.085 | 353 | 30 | 2 | 60 | 409 | 31 | 381 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228320 | G7JUF2 | 90.085 | 353 | 30 | 2 | 60 | 409 | 31 | 381 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002690 | Msa0228320 | 0.803312 | 3.702159e-49 | -8.615850e-47 |
| Msa0004180 | Msa0228320 | 0.801486 | 8.802363e-49 | -8.615850e-47 |
| Msa0011450 | Msa0228320 | 0.800787 | 1.223574e-48 | -8.615850e-47 |
| Msa0038860 | Msa0228320 | 0.824626 | 7.290884e-54 | -8.615850e-47 |
| Msa0042210 | Msa0228320 | 0.807277 | 5.468870e-50 | -8.615850e-47 |
| Msa0069590 | Msa0228320 | 0.801343 | 9.415038e-49 | -8.615850e-47 |
| Msa0070580 | Msa0228320 | 0.801100 | 1.055640e-48 | -8.615850e-47 |
| Msa0075080 | Msa0228320 | 0.813689 | 2.253940e-51 | -8.615850e-47 |
| Msa0086370 | Msa0228320 | -0.813422 | 2.580997e-51 | -8.615850e-47 |
| Msa0102290 | Msa0228320 | 0.809984 | 1.444295e-50 | -8.615850e-47 |
| Msa0105140 | Msa0228320 | 0.806845 | 6.750353e-50 | -8.615850e-47 |
| Msa0116780 | Msa0228320 | 0.809745 | 1.625445e-50 | -8.615850e-47 |
| Msa0122930 | Msa0228320 | 0.801097 | 1.057314e-48 | -8.615850e-47 |
| Msa0141090 | Msa0228320 | 0.814272 | 1.676719e-51 | -8.615850e-47 |
| Msa0145990 | Msa0228320 | 0.801079 | 1.066493e-48 | -8.615850e-47 |
| Msa0167570 | Msa0228320 | 0.810998 | 8.722293e-51 | -8.615850e-47 |
| Msa0168470 | Msa0228320 | 0.809799 | 1.582435e-50 | -8.615850e-47 |
| Msa0170550 | Msa0228320 | 0.800154 | 1.646078e-48 | -8.615850e-47 |
| Msa0181740 | Msa0228320 | 0.805663 | 1.197243e-49 | -8.615850e-47 |
| Msa0185540 | Msa0228320 | 0.801139 | 1.036478e-48 | -8.615850e-47 |
| Msa0186750 | Msa0228320 | 0.804438 | 2.159679e-49 | -8.615850e-47 |
| Msa0225790 | Msa0228320 | 0.807530 | 4.832948e-50 | -8.615850e-47 |
| Msa0228320 | Msa0260930 | 0.803563 | 3.284460e-49 | -8.615850e-47 |
| Msa0228320 | Msa0261020 | 0.810004 | 1.429958e-50 | -8.615850e-47 |
| Msa0228320 | Msa0274530 | 0.809006 | 2.341700e-50 | -8.615850e-47 |
| Msa0228320 | Msa0274690 | 0.801413 | 9.110715e-49 | -8.615850e-47 |
| Msa0228320 | Msa0293000 | 0.829162 | 6.006124e-55 | -8.615850e-47 |
| Msa0228320 | Msa0293060 | 0.848812 | 4.827183e-60 | -8.615850e-47 |
| Msa0228320 | Msa0293070 | 0.810857 | 9.357793e-51 | -8.615850e-47 |
| Msa0228320 | Msa0300470 | -0.807586 | 4.700911e-50 | -8.615850e-47 |
| Msa0228320 | Msa0317820 | 0.821860 | 3.225442e-53 | -8.615850e-47 |
| Msa0228320 | Msa0369080 | 0.815449 | 9.191399e-52 | -8.615850e-47 |
| Msa0228320 | Msa0369580 | 0.885002 | 1.183612e-71 | -8.615850e-47 |
| Msa0228320 | Msa0374840 | 0.814864 | 1.240098e-51 | -8.615850e-47 |
| Msa0228320 | Msa0375100 | 0.830074 | 3.603720e-55 | -8.615850e-47 |
| Msa0228320 | Msa0416430 | 0.808510 | 2.989931e-50 | -8.615850e-47 |
| Msa0228320 | Msa0417000 | 0.876622 | 1.205854e-68 | -8.615850e-47 |
| Msa0228320 | Msa0424940 | 0.887175 | 1.796661e-72 | -8.615850e-47 |
| Msa0228320 | Msa0426890 | 0.802058 | 6.718090e-49 | -8.615850e-47 |
| Msa0228320 | Msa0439940 | 0.808616 | 2.837942e-50 | -8.615850e-47 |
| Msa0228320 | Msa0450390 | 0.801143 | 1.034674e-48 | -8.615850e-47 |
| Msa0228320 | Msa0462530 | 0.804091 | 2.550611e-49 | -8.615850e-47 |
| Msa0228320 | Msa0463820 | 0.859180 | 4.942843e-63 | -8.615850e-47 |
| Msa0228320 | Msa0476140 | 0.806655 | 7.400974e-50 | -8.615850e-47 |
| Msa0228320 | Msa0483230 | 0.821180 | 4.631079e-53 | -8.615850e-47 |
| Msa0228320 | Msa0483410 | 0.817661 | 2.937445e-52 | -8.615850e-47 |
| Msa0228320 | Msa0490740 | 0.809775 | 1.601299e-50 | -8.615850e-47 |
| Msa0228320 | Msa0506700 | 0.800852 | 1.186478e-48 | -8.615850e-47 |
| Msa0228320 | Msa0511600 | 0.802533 | 5.363300e-49 | -8.615850e-47 |
| Msa0228320 | Msa0512930 | 0.801718 | 7.889688e-49 | -8.615850e-47 |
| Msa0228320 | Msa0514630 | 0.810229 | 1.278896e-50 | -8.615850e-47 |
| Msa0228320 | Msa0516340 | 0.850521 | 1.608943e-60 | -8.615850e-47 |
| Msa0228320 | Msa0527950 | -0.802783 | 4.762478e-49 | -8.615850e-47 |
| Msa0228320 | Msa0577920 | 0.969394 | 4.660033e-130 | -8.615850e-47 |
| Msa0228320 | Msa0616570 | 0.821613 | 3.678155e-53 | -8.615850e-47 |
| Msa0228320 | Msa0624260 | 0.804663 | 1.939010e-49 | -8.615850e-47 |
| Msa0228320 | Msa0624360 | 0.802675 | 5.011945e-49 | -8.615850e-47 |
| Msa0228320 | Msa0625510 | 0.944751 | 1.094490e-103 | -8.615850e-47 |
| Msa0228320 | Msa0655980 | 0.819909 | 9.068613e-53 | -8.615850e-47 |
| Msa0228320 | Msa0677250 | 0.810676 | 1.023873e-50 | -8.615850e-47 |
| Msa0228320 | Msa0694810 | 0.842656 | 2.263271e-58 | -8.615850e-47 |
| Msa0228320 | Msa0699900 | 0.821693 | 3.525890e-53 | -8.615850e-47 |
| Msa0228320 | Msa0711860 | 0.829699 | 4.448363e-55 | -8.615850e-47 |
| Msa0228320 | Msa0714230 | 0.801008 | 1.102691e-48 | -8.615850e-47 |
| Msa0228320 | Msa0729120 | 0.829971 | 3.818891e-55 | -8.615850e-47 |
| Msa0228320 | Msa0743280 | 0.805995 | 1.019952e-49 | -8.615850e-47 |
| Msa0228320 | Msa0748470 | 0.802437 | 5.611614e-49 | -8.615850e-47 |
| Msa0228320 | Msa0753590 | 0.801979 | 6.971865e-49 | -8.615850e-47 |
| Msa0228320 | Msa0754840 | 0.815158 | 1.066684e-51 | -8.615850e-47 |
| Msa0228320 | Msa0766910 | 0.834500 | 2.892002e-56 | -8.615850e-47 |
| Msa0228320 | Msa0786600 | 0.805509 | 1.289823e-49 | -8.615850e-47 |
| Msa0228320 | Msa0799150 | 0.847640 | 1.017611e-59 | -8.615850e-47 |
| Msa0228320 | Msa0807840 | 0.851840 | 6.830156e-61 | -8.615850e-47 |
| Msa0228320 | Msa0822380 | 0.818038 | 2.414759e-52 | -8.615850e-47 |
| Msa0228320 | Msa0822680 | 0.819674 | 1.025694e-52 | -8.615850e-47 |
| Msa0228320 | Msa0828730 | 0.804345 | 2.259165e-49 | -8.615850e-47 |
| Msa0228320 | Msa0866310 | 0.833777 | 4.388880e-56 | -8.615850e-47 |
| Msa0228320 | Msa0866510 | 0.830971 | 2.174427e-55 | -8.615850e-47 |
| Msa0228320 | Msa0940400 | 0.813438 | 2.559699e-51 | -8.615850e-47 |
| Msa0228320 | Msa0961200 | 0.800582 | 1.347218e-48 | -8.615850e-47 |
| Msa0228320 | Msa0978540 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
| Msa0228320 | Msa0983690 | 0.804105 | 2.533767e-49 | -8.615850e-47 |
| Msa0228320 | Msa1010900 | 0.826826 | 2.192098e-54 | -8.615850e-47 |
| Msa0228320 | Msa1031190 | 0.805464 | 1.318050e-49 | -8.615850e-47 |
| Msa0228320 | Msa1044520 | 0.879306 | 1.387469e-69 | -8.615850e-47 |
| Msa0228320 | Msa1057320 | 0.804097 | 2.544463e-49 | -8.615850e-47 |
| Msa0228320 | Msa1057340 | 0.811866 | 5.650118e-51 | -8.615850e-47 |
| Msa0228320 | Msa1070370 | 0.805070 | 1.594031e-49 | -8.615850e-47 |
| Msa0228320 | Msa1081950 | 0.812445 | 4.223652e-51 | -8.615850e-47 |
| Msa0228320 | Msa1082640 | 0.813681 | 2.263184e-51 | -8.615850e-47 |
| Msa0228320 | Msa1084630 | 0.824067 | 9.867074e-54 | -8.615850e-47 |
| Msa0228320 | Msa1119420 | 0.800484 | 1.410183e-48 | -8.615850e-47 |
| Msa0228320 | Msa1121580 | 0.813836 | 2.092289e-51 | -8.615850e-47 |
| Msa0228320 | Msa1158180 | 0.803335 | 3.662351e-49 | -8.615850e-47 |
| Msa0228320 | Msa1190300 | 0.810448 | 1.146964e-50 | -8.615850e-47 |
| Msa0228320 | Msa1190320 | 0.820384 | 7.059044e-53 | -8.615850e-47 |
| Msa0228320 | Msa1222900 | 0.805897 | 1.069166e-49 | -8.615850e-47 |
| Msa0228320 | Msa1226330 | 0.806224 | 9.127152e-50 | -8.615850e-47 |
| Msa0228320 | Msa1264300 | 0.877505 | 5.954182e-69 | -8.615850e-47 |
| Msa0228320 | Msa1296270 | 0.801034 | 1.089451e-48 | -8.615850e-47 |
| Msa0228320 | Msa1330080 | 0.810293 | 1.238745e-50 | -8.615850e-47 |
| Msa0228320 | Msa1334350 | 0.866668 | 2.410293e-65 | -8.615850e-47 |
| Msa0228320 | Msa1351380 | 0.843125 | 1.698652e-58 | -8.615850e-47 |
| Msa0228320 | Msa1375650 | 0.814380 | 1.586808e-51 | -8.615850e-47 |
| Msa0228320 | Msa1400330 | 0.825208 | 5.313865e-54 | -8.615850e-47 |
| Msa0228320 | Msa1402340 | 0.867967 | 9.256721e-66 | -8.615850e-47 |
| Msa0228320 | Msa1405040 | 0.810798 | 9.634917e-51 | -8.615850e-47 |
| Msa0228320 | Msa1448410 | 0.820218 | 7.705550e-53 | -8.615850e-47 |
| Msa0228320 | Msa1452230 | 0.806593 | 7.630120e-50 | -8.615850e-47 |
| Msa0228320 | Msa1462700 | 0.808374 | 3.196565e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228320 | MtrunA17_Chr4g0000091 | 90.085 | 353 | 30 | 2 | 60 | 409 | 31 | 381 | 0.0 | 628 |
| Msa0228320 | MtrunA17_Chr3g0127861 | 30.938 | 320 | 189 | 8 | 73 | 377 | 94 | 396 | 4.87e-40 | 147 |
| Msa0228320 | MtrunA17_Chr1g0189151 | 31.293 | 294 | 173 | 9 | 97 | 377 | 91 | 368 | 1.85e-36 | 137 |
| Msa0228320 | MtrunA17_Chr5g0395041 | 25.672 | 335 | 232 | 7 | 73 | 399 | 111 | 436 | 7.69e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228320 | AT1G55960.1 | 59.509 | 326 | 122 | 4 | 92 | 409 | 77 | 400 | 4.27e-140 | 406 |
| Msa0228320 | AT3G13062.1 | 55.882 | 374 | 156 | 6 | 42 | 408 | 28 | 399 | 1.14e-139 | 405 |
| Msa0228320 | AT3G13062.2 | 55.882 | 374 | 156 | 6 | 42 | 408 | 28 | 399 | 5.45e-139 | 404 |
| Msa0228320 | AT3G13062.3 | 54.450 | 382 | 157 | 6 | 42 | 408 | 28 | 407 | 6.44e-137 | 398 |
| Msa0228320 | AT1G55960.2 | 53.067 | 326 | 118 | 5 | 92 | 409 | 77 | 375 | 2.31e-116 | 344 |
| Msa0228320 | AT1G64720.1 | 30.573 | 314 | 182 | 9 | 79 | 377 | 66 | 358 | 2.28e-40 | 148 |
| Msa0228320 | AT4G14500.1 | 32.016 | 253 | 161 | 5 | 90 | 335 | 129 | 377 | 8.42e-39 | 145 |
| Msa0228320 | AT5G54170.1 | 28.483 | 323 | 213 | 7 | 93 | 408 | 124 | 435 | 2.47e-36 | 138 |
| Msa0228320 | AT3G23080.2 | 31.481 | 216 | 139 | 4 | 96 | 304 | 88 | 301 | 1.13e-31 | 124 |
| Msa0228320 | AT3G23080.3 | 31.481 | 216 | 139 | 4 | 96 | 304 | 88 | 301 | 1.13e-31 | 124 |
| Msa0228320 | AT3G23080.1 | 31.472 | 197 | 127 | 3 | 115 | 304 | 137 | 332 | 1.36e-31 | 124 |
| Msa0228320 | AT4G14500.2 | 29.801 | 151 | 101 | 3 | 90 | 237 | 129 | 277 | 1.93e-17 | 82.8 |
Find 85 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTAGGTTTGCAGGATT+TGG | 0.251778 | 2_1:-80244555 | None:intergenic |
| ATCAGTAACCTTAGGTTTGC+AGG | 0.256518 | 2_1:-80244561 | None:intergenic |
| ACTATTGGCTAACAACTTCT+TGG | 0.298347 | 2_1:-80247623 | None:intergenic |
| ATCTAAATGAGAATGCTAAA+TGG | 0.314684 | 2_1:+80244489 | Msa0228320:CDS |
| CCAATAGTGTGCTGCTTGTA+GGG | 0.339546 | 2_1:+80247638 | Msa0228320:CDS |
| GACCGTGTTCAATAATATTT+CGG | 0.348371 | 2_1:+80245666 | Msa0228320:CDS |
| CTAGAGAATACGTGCTAACT+TGG | 0.350444 | 2_1:+80245833 | Msa0228320:CDS |
| GTACCTAGATGGGTTTAAAT+TGG | 0.366540 | 2_1:-80244169 | None:intergenic |
| GCCAATAGTGTGCTGCTTGT+AGG | 0.372270 | 2_1:+80247637 | Msa0228320:CDS |
| AATATTGTTTGGTTGAAACT+TGG | 0.375184 | 2_1:+80247978 | Msa0228320:three_prime_UTR |
| ATGAACATCTATGGCAGTTC+GGG | 0.381365 | 2_1:+80244009 | Msa0228320:CDS |
| TTCAGTCAATTTAATGCAAA+AGG | 0.385709 | 2_1:+80246919 | Msa0228320:CDS |
| GAAATAGGTACGTACCTAGA+TGG | 0.396481 | 2_1:-80244180 | None:intergenic |
| TTAGGAATGTGAACATACTT+TGG | 0.398158 | 2_1:+80246354 | Msa0228320:intron |
| GACTGAACTGTTAACTGAAC+TGG | 0.403147 | 2_1:-80246903 | None:intergenic |
| GAATGTGGAGATGGCAAAAC+TGG | 0.403229 | 2_1:+80246799 | Msa0228320:CDS |
| AGAGAGATTCGTTGTGTGGA+GGG | 0.403527 | 2_1:+80243970 | Msa0228320:CDS |
| CTACCAATTTAAACCCATCT+AGG | 0.411083 | 2_1:+80244166 | Msa0228320:CDS |
| TCTAAATGAGAATGCTAAAT+GGG | 0.425962 | 2_1:+80244490 | Msa0228320:CDS |
| TTGGAAATTGTGGGAGGGGA+AGG | 0.429664 | 2_1:+80245852 | Msa0228320:CDS |
| TGGGTTTAAATTGGTAGAAT+CGG | 0.437970 | 2_1:-80244160 | None:intergenic |
| GTAAAGATGATGAACATCTA+TGG | 0.441520 | 2_1:+80244000 | Msa0228320:CDS |
| CCCTACAAGCAGCACACTAT+TGG | 0.441576 | 2_1:-80247638 | None:intergenic |
| GATGAACATCTATGGCAGTT+CGG | 0.444323 | 2_1:+80244008 | Msa0228320:CDS |
| ATGAAGGAGTATCACAAGAT+AGG | 0.454770 | 2_1:+80243910 | Msa0228320:CDS |
| TACAAAGCTCCATATGCCTT+TGG | 0.455824 | 2_1:-80246828 | None:intergenic |
| ACGTGCTAACTTGGAAATTG+TGG | 0.456235 | 2_1:+80245842 | Msa0228320:CDS |
| CAAGTTAGCACGTATTCTCT+AGG | 0.463689 | 2_1:-80245832 | None:intergenic |
| AAATCTGATGGTTCTGAAGT+TGG | 0.471935 | 2_1:+80245778 | Msa0228320:CDS |
| TGTATAGGTACCGGCTTGCT+TGG | 0.473815 | 2_1:+80247504 | Msa0228320:intron |
| TATTCTCTAGGTTTCAAAAG+AGG | 0.479731 | 2_1:-80245820 | None:intergenic |
| GTTTGATCATGAATGATAGT+AGG | 0.489865 | 2_1:-80247559 | None:intergenic |
| GGATGTTGTTGTTGTTGAAT+CGG | 0.499572 | 2_1:-80244127 | None:intergenic |
| CGTGCTAACTTGGAAATTGT+GGG | 0.500606 | 2_1:+80245843 | Msa0228320:CDS |
| CAATGACTACAGAAAACAAT+GGG | 0.504178 | 2_1:+80245717 | Msa0228320:CDS |
| CACGGCAGAATAAATATGTA+CGG | 0.508876 | 2_1:+80246380 | Msa0228320:CDS |
| AGATTCGTTGTGTGGAGGGG+AGG | 0.509697 | 2_1:+80243974 | Msa0228320:CDS |
| CTAGGTGCTAAAGTTGCAAT+GGG | 0.510640 | 2_1:+80247694 | Msa0228320:CDS |
| ATGTTTCATCAAGAAGATGC+TGG | 0.515286 | 2_1:+80246773 | Msa0228320:CDS |
| GGGAACACGGGGAGAAATGA+AGG | 0.518515 | 2_1:+80243894 | None:intergenic |
| CCTAGGTGCTAAAGTTGCAA+TGG | 0.518576 | 2_1:+80247693 | Msa0228320:CDS |
| TAACTTGGAAATTGTGGGAG+GGG | 0.526844 | 2_1:+80245848 | Msa0228320:CDS |
| ATTCTCTAGGTTTCAAAAGA+GGG | 0.532340 | 2_1:-80245819 | None:intergenic |
| TTGGCTAACAACTTCTTGGA+TGG | 0.533883 | 2_1:-80247619 | None:intergenic |
| TGCCAAATCCTGCAAACCTA+AGG | 0.543122 | 2_1:+80244553 | Msa0228320:CDS |
| AAATAGGTACGTACCTAGAT+GGG | 0.548158 | 2_1:-80244179 | None:intergenic |
| TCACGTGGTCACTCTAGCCT+AGG | 0.548358 | 2_1:+80247676 | Msa0228320:CDS |
| GAAGATACTCTGCTGCAAGC+TGG | 0.548902 | 2_1:+80246873 | Msa0228320:CDS |
| GAGAGATTCGTTGTGTGGAG+GGG | 0.551270 | 2_1:+80243971 | Msa0228320:CDS |
| ATCTCACAGGCATTTCTACC+AGG | 0.552255 | 2_1:-80246746 | None:intergenic |
| AAGAGAGATTCGTTGTGTGG+AGG | 0.557552 | 2_1:+80243969 | Msa0228320:CDS |
| GGTAGAATCGGAGACGAAAG+AGG | 0.558156 | 2_1:-80244148 | None:intergenic |
| GGTTGAGCACAATCAACTGC+AGG | 0.572742 | 2_1:+80245750 | Msa0228320:CDS |
| ATGAAACATTGTGATCTCAC+AGG | 0.577864 | 2_1:-80246759 | None:intergenic |
| ATGGAGCTTTGTATGCAAGA+TGG | 0.577968 | 2_1:+80246838 | Msa0228320:CDS |
| AGTATCACAAGATAGGTTTG+TGG | 0.584877 | 2_1:+80243917 | Msa0228320:CDS |
| CCATTGCAACTTTAGCACCT+AGG | 0.588447 | 2_1:-80247693 | None:intergenic |
| CTGCAGGTGGACAAATCTGA+TGG | 0.593077 | 2_1:+80245766 | Msa0228320:CDS |
| ACGGCAGAATAAATATGTAC+GGG | 0.595469 | 2_1:+80246381 | Msa0228320:CDS |
| CGTACATATTTATTCTGCCG+TGG | 0.595658 | 2_1:-80246379 | None:intergenic |
| GTGAACATACTTTGGCTCCA+CGG | 0.602406 | 2_1:+80246362 | Msa0228320:CDS |
| TAAAAGAGAGATTCGTTGTG+TGG | 0.605518 | 2_1:+80243966 | Msa0228320:CDS |
| CTAACTTGGAAATTGTGGGA+GGG | 0.610138 | 2_1:+80245847 | Msa0228320:CDS |
| GTCACACTCAAATATCTCAA+GGG | 0.610413 | 2_1:-80245646 | None:intergenic |
| TGCTGGTTTGAATGTGGAGA+TGG | 0.613421 | 2_1:+80246790 | Msa0228320:CDS |
| TTGTACGATTTATGTATACG+TGG | 0.613425 | 2_1:+80247861 | Msa0228320:three_prime_UTR |
| GTCATGTATAATTTATGACA+TGG | 0.615943 | 2_1:+80248043 | Msa0228320:three_prime_UTR |
| CAATAGTGTGCTGCTTGTAG+GGG | 0.617598 | 2_1:+80247639 | Msa0228320:CDS |
| TGTACGATTTATGTATACGT+GGG | 0.620327 | 2_1:+80247862 | Msa0228320:three_prime_UTR |
| GGTCACACTCAAATATCTCA+AGG | 0.625085 | 2_1:-80245647 | None:intergenic |
| GTACTAGATTCCAAGCAAGC+CGG | 0.626519 | 2_1:-80247514 | None:intergenic |
| AATAGTGTGCTGCTTGTAGG+GGG | 0.627038 | 2_1:+80247640 | Msa0228320:CDS |
| AGAAGATGCTGGTTTGAATG+TGG | 0.629014 | 2_1:+80246784 | Msa0228320:CDS |
| TTCATTTGTCACAATCTCCG+AGG | 0.636784 | 2_1:-80244432 | None:intergenic |
| TGAGCACAATCAACTGCAGG+TGG | 0.636879 | 2_1:+80245753 | Msa0228320:CDS |
| TGTCATCAATTGCAGAACCT+CGG | 0.647597 | 2_1:+80244415 | Msa0228320:intron |
| GATGCTAAGAAACTTCTACA+TGG | 0.648028 | 2_1:+80245693 | Msa0228320:CDS |
| TCACACTCAAATATCTCAAG+GGG | 0.652492 | 2_1:-80245645 | None:intergenic |
| GCTAACTTGGAAATTGTGGG+AGG | 0.653551 | 2_1:+80245846 | Msa0228320:CDS |
| ACAATGACTACAGAAAACAA+TGG | 0.653588 | 2_1:+80245716 | Msa0228320:CDS |
| AGCCGAAATATTATTGAACA+CGG | 0.666524 | 2_1:-80245668 | None:intergenic |
| AAGTGCGTGTGATATCAAGA+AGG | 0.674822 | 2_1:+80247596 | Msa0228320:CDS |
| TCTGGCTGGCGAATAAGACA+AGG | 0.684761 | 2_1:+80246418 | Msa0228320:CDS |
| AAAACAATGGGATAAGACAG+TGG | 0.709971 | 2_1:+80245729 | Msa0228320:CDS |
| GGTGCAATATGTCTGTCACG+TGG | 0.761442 | 2_1:+80247661 | Msa0228320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTTATAAATTAAA+TGG | + | chr2_1:80245225-80245244 | Msa0228320:intron | 0.0% |
| !!! | TATAATTAGTTATATGTTTT+AGG | + | chr2_1:80245504-80245523 | Msa0228320:intron | 10.0% |
| !!! | TGTAATTTTAAATTTGAATT+TGG | + | chr2_1:80245561-80245580 | Msa0228320:intron | 10.0% |
| !! | AGTAATTAAAATTTAAAAGT+TGG | - | chr2_1:80247135-80247154 | None:intergenic | 10.0% |
| !! | AAATTAAATCAATTAATCAA+TGG | - | chr2_1:80247359-80247378 | None:intergenic | 10.0% |
| !!! | TCATATATTTTGTGAAATTT+AGG | + | chr2_1:80244234-80244253 | Msa0228320:intron | 15.0% |
| !!! | CATATATTTTGTGAAATTTA+GGG | + | chr2_1:80244235-80244254 | Msa0228320:intron | 15.0% |
| !! | GACATTATTATAATTTATCT+TGG | + | chr2_1:80244606-80244625 | Msa0228320:intron | 15.0% |
| !!! | ATTTATATTTTTCCTTAACT+TGG | - | chr2_1:80244862-80244881 | None:intergenic | 15.0% |
| !!! | ATTAGAAACAATATTTTAAC+TGG | + | chr2_1:80245364-80245383 | Msa0228320:intron | 15.0% |
| !!! | AACATTTTACTGTTATATAA+AGG | + | chr2_1:80245879-80245898 | Msa0228320:CDS | 15.0% |
| !!! | AATTTTTTTCTTTTCATCTT+TGG | + | chr2_1:80246321-80246340 | Msa0228320:intron | 15.0% |
| !! | ACAACGAAATATAAATAAAA+AGG | - | chr2_1:80246658-80246677 | None:intergenic | 15.0% |
| !!! | AAATTTAAAAGTTGGTTTAT+TGG | - | chr2_1:80247127-80247146 | None:intergenic | 15.0% |
| !! | AAGTAAAATGAAATTGAAGA+AGG | - | chr2_1:80244208-80244227 | None:intergenic | 20.0% |
| !!! | TCAATTTCATTTTACTTCAT+AGG | + | chr2_1:80244211-80244230 | Msa0228320:intron | 20.0% |
| !! | TTGATTGTAAAACTGTTATA+TGG | - | chr2_1:80244343-80244362 | None:intergenic | 20.0% |
| !!! | GAAGTTTTTAATGATGATTT+TGG | + | chr2_1:80244460-80244479 | Msa0228320:CDS | 20.0% |
| !!! | TTTTTAATGATGATTTTGGA+TGG | + | chr2_1:80244464-80244483 | Msa0228320:CDS | 20.0% |
| !! | CATTTCAAGAATGATATTAA+AGG | - | chr2_1:80245160-80245179 | None:intergenic | 20.0% |
| !!! | AAATGGAAGATATTTTTTGT+TGG | + | chr2_1:80245242-80245261 | Msa0228320:intron | 20.0% |
| !!! | AATATTGTTTCTAATCATCT+TGG | - | chr2_1:80245359-80245378 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATAAACATGTT+TGG | - | chr2_1:80245427-80245446 | None:intergenic | 20.0% |
| !! | GGAGTTTAAATTTAATTCTT+TGG | + | chr2_1:80245525-80245544 | Msa0228320:intron | 20.0% |
| !!! | ATTTAAAATTACATGCTTGA+AGG | - | chr2_1:80245554-80245573 | None:intergenic | 20.0% |
| !! | TTCTTGATCAATATATTTCT+AGG | - | chr2_1:80246095-80246114 | None:intergenic | 20.0% |
| !!! | TTTTTCCGTGAATTTTTTAT+GGG | + | chr2_1:80246463-80246482 | Msa0228320:intron | 20.0% |
| !! | ATATTCCCATAAAAAATTCA+CGG | - | chr2_1:80246471-80246490 | None:intergenic | 20.0% |
| !!! | TTTTTCTATCCTCATAAAAA+TGG | + | chr2_1:80246510-80246529 | Msa0228320:intron | 20.0% |
| !!! | TCAACATTTAATGTATTTTC+TGG | + | chr2_1:80246968-80246987 | Msa0228320:intron | 20.0% |
| !! | TGCCTTGTAAATTATAATTA+CGG | + | chr2_1:80247019-80247038 | Msa0228320:intron | 20.0% |
| !! | TCAAAATAAAATGCTAAAGA+TGG | + | chr2_1:80247074-80247093 | Msa0228320:intron | 20.0% |
| !! | TTAAGTTAAATGAAAGAATG+CGG | - | chr2_1:80247243-80247262 | None:intergenic | 20.0% |
| !! | AGTTCACTAAAAATATTGTT+TGG | + | chr2_1:80247967-80247986 | Msa0228320:three_prime_UTR | 20.0% |
| ! | AAATTGAAGAAGGAAGAAAT+AGG | - | chr2_1:80244198-80244217 | None:intergenic | 25.0% |
| ! | ATCTAAATGAGAATGCTAAA+TGG | + | chr2_1:80244489-80244508 | Msa0228320:CDS | 25.0% |
| ! | TCTAAATGAGAATGCTAAAT+GGG | + | chr2_1:80244490-80244509 | Msa0228320:CDS | 25.0% |
| ! | ATCATATAACAATTCAAGCT+TGG | - | chr2_1:80244687-80244706 | None:intergenic | 25.0% |
| !! | AATCTATTTTGTCCAAGTTA+AGG | + | chr2_1:80244847-80244866 | Msa0228320:intron | 25.0% |
| ! | AAAATTTGAATGAACTATGC+TGG | + | chr2_1:80245131-80245150 | Msa0228320:intron | 25.0% |
| !!! | TAAGAAAAATTGACTTGTGT+AGG | - | chr2_1:80245486-80245505 | None:intergenic | 25.0% |
| ! | AGAAATTAGAGATTAGAACT+TGG | + | chr2_1:80246111-80246130 | Msa0228320:intron | 25.0% |
| ! | TGATAATAGTGATATACTAG+TGG | - | chr2_1:80246166-80246185 | None:intergenic | 25.0% |
| ! | TGTGCAAATATTTGAGAATA+TGG | - | chr2_1:80246196-80246215 | None:intergenic | 25.0% |
| !! | TTCTCATTCTGTACATATTT+TGG | + | chr2_1:80246232-80246251 | Msa0228320:intron | 25.0% |
| !! | GTTTTTCCGTGAATTTTTTA+TGG | + | chr2_1:80246462-80246481 | Msa0228320:intron | 25.0% |
| ! | TTCAGTCAATTTAATGCAAA+AGG | + | chr2_1:80246919-80246938 | Msa0228320:CDS | 25.0% |
| ! | GCCTTGTAAATTATAATTAC+GGG | + | chr2_1:80247020-80247039 | Msa0228320:intron | 25.0% |
| ! | TCCCGTAATTATAATTTACA+AGG | - | chr2_1:80247024-80247043 | None:intergenic | 25.0% |
| ! | CTCAATGAAAAATTTCCATA+GGG | - | chr2_1:80247293-80247312 | None:intergenic | 25.0% |
| ! | ACTCAATGAAAAATTTCCAT+AGG | - | chr2_1:80247294-80247313 | None:intergenic | 25.0% |
| !! | GGATTGTTTGTTAGTTATAT+CGG | - | chr2_1:80247480-80247499 | None:intergenic | 25.0% |
| ! | AATATTGTTTGGTTGAAACT+TGG | + | chr2_1:80247978-80247997 | Msa0228320:three_prime_UTR | 25.0% |
| ! | GTCATGTATAATTTATGACA+TGG | + | chr2_1:80248043-80248062 | Msa0228320:three_prime_UTR | 25.0% |
| GTAAAGATGATGAACATCTA+TGG | + | chr2_1:80244000-80244019 | Msa0228320:CDS | 30.0% | |
| TGGGTTTAAATTGGTAGAAT+CGG | - | chr2_1:80244163-80244182 | None:intergenic | 30.0% | |
| ACAATAGTTTCACTGGAATA+TGG | + | chr2_1:80244261-80244280 | Msa0228320:intron | 30.0% | |
| GAGAATTAGGACTTTACTTT+AGG | + | chr2_1:80244283-80244302 | Msa0228320:intron | 30.0% | |
| ! | TAGGACTTTACTTTAGGAAT+AGG | + | chr2_1:80244289-80244308 | Msa0228320:intron | 30.0% |
| ATGGACATGAATGATATACA+AGG | - | chr2_1:80244324-80244343 | None:intergenic | 30.0% | |
| AGGATAAAATCAGTAACCTT+AGG | - | chr2_1:80244572-80244591 | None:intergenic | 30.0% | |
| !!! | TACTGATTTTATCCTTCAAC+TGG | + | chr2_1:80244577-80244596 | Msa0228320:intron | 30.0% |
| !! | ACTGATTTTATCCTTCAACT+GGG | + | chr2_1:80244578-80244597 | Msa0228320:intron | 30.0% |
| TAATTTATCTTGGCTACTCT+TGG | + | chr2_1:80244616-80244635 | Msa0228320:intron | 30.0% | |
| ATAACAATTCAAGCTTGGTA+TGG | - | chr2_1:80244682-80244701 | None:intergenic | 30.0% | |
| TTAGAAAAAGGGAAAACATG+GGG | - | chr2_1:80244721-80244740 | None:intergenic | 30.0% | |
| GTTAGAAAAAGGGAAAACAT+GGG | - | chr2_1:80244722-80244741 | None:intergenic | 30.0% | |
| AGTTAGAAAAAGGGAAAACA+TGG | - | chr2_1:80244723-80244742 | None:intergenic | 30.0% | |
| CATTGTGCAAGTTAGAAAAA+GGG | - | chr2_1:80244732-80244751 | None:intergenic | 30.0% | |
| ACATTGTGCAAGTTAGAAAA+AGG | - | chr2_1:80244733-80244752 | None:intergenic | 30.0% | |
| ACCTCCTAAAATACAAGTTT+AGG | + | chr2_1:80245082-80245101 | Msa0228320:intron | 30.0% | |
| CCTCCTAAAATACAAGTTTA+GGG | + | chr2_1:80245083-80245102 | Msa0228320:intron | 30.0% | |
| ! | TGTCCCTAAACTTGTATTTT+AGG | - | chr2_1:80245089-80245108 | None:intergenic | 30.0% |
| AAATACAAGTTTAGGGACAA+AGG | + | chr2_1:80245090-80245109 | Msa0228320:intron | 30.0% | |
| !!! | TGGAAGATATTTTTTGTTGG+TGG | + | chr2_1:80245245-80245264 | Msa0228320:intron | 30.0% |
| !!! | TATTTTTTGTTGGTGGTGTA+AGG | + | chr2_1:80245252-80245271 | Msa0228320:intron | 30.0% |
| !!! | ATTTTTTGTTGGTGGTGTAA+GGG | + | chr2_1:80245253-80245272 | Msa0228320:intron | 30.0% |
| !!! | ATTTTATTGTTGTTTCTCCC+TGG | + | chr2_1:80245608-80245627 | Msa0228320:intron | 30.0% |
| GACCGTGTTCAATAATATTT+CGG | + | chr2_1:80245666-80245685 | Msa0228320:CDS | 30.0% | |
| AGCCGAAATATTATTGAACA+CGG | - | chr2_1:80245671-80245690 | None:intergenic | 30.0% | |
| ACAATGACTACAGAAAACAA+TGG | + | chr2_1:80245716-80245735 | Msa0228320:CDS | 30.0% | |
| CAATGACTACAGAAAACAAT+GGG | + | chr2_1:80245717-80245736 | Msa0228320:CDS | 30.0% | |
| ATTCTCTAGGTTTCAAAAGA+GGG | - | chr2_1:80245822-80245841 | None:intergenic | 30.0% | |
| TATTCTCTAGGTTTCAAAAG+AGG | - | chr2_1:80245823-80245842 | None:intergenic | 30.0% | |
| AAAGGTAATACATCCGATTA+TGG | + | chr2_1:80245897-80245916 | Msa0228320:intron | 30.0% | |
| AAGGTAATACATCCGATTAT+GGG | + | chr2_1:80245898-80245917 | Msa0228320:intron | 30.0% | |
| ACATGTGCATTAACACTAAA+AGG | - | chr2_1:80245956-80245975 | None:intergenic | 30.0% | |
| TTCTCATATGGATGTTGTTA+TGG | + | chr2_1:80246001-80246020 | Msa0228320:intron | 30.0% | |
| TCTCATATGGATGTTGTTAT+GGG | + | chr2_1:80246002-80246021 | Msa0228320:intron | 30.0% | |
| AATTCTTCTTGTTCAATGAC+AGG | - | chr2_1:80246070-80246089 | None:intergenic | 30.0% | |
| ATATTTGAGAATATGGTGAC+TGG | - | chr2_1:80246189-80246208 | None:intergenic | 30.0% | |
| TCATTGCTTGAAAAAAAGGT+AGG | - | chr2_1:80246291-80246310 | None:intergenic | 30.0% | |
| GCAATCATTGCTTGAAAAAA+AGG | - | chr2_1:80246295-80246314 | None:intergenic | 30.0% | |
| TTAGGAATGTGAACATACTT+TGG | + | chr2_1:80246354-80246373 | Msa0228320:intron | 30.0% | |
| !! | AGATCTTCACCATTTTTATG+AGG | - | chr2_1:80246522-80246541 | None:intergenic | 30.0% |
| ! | TGTATTTCCGTGCATTTTTA+TGG | + | chr2_1:80246610-80246629 | Msa0228320:intron | 30.0% |
| TTAACCTCCATAAAAATGCA+CGG | - | chr2_1:80246620-80246639 | None:intergenic | 30.0% | |
| TTTATTGGTAAACGACGTAA+CGG | - | chr2_1:80247112-80247131 | None:intergenic | 30.0% | |
| AAAATAAATAGCCTACCCTA+TGG | + | chr2_1:80247275-80247294 | Msa0228320:intron | 30.0% | |
| ATGAAAAATTTCCATAGGGT+AGG | - | chr2_1:80247289-80247308 | None:intergenic | 30.0% | |
| ! | TCTTTTGTGTGTATCATTCT+TGG | + | chr2_1:80247385-80247404 | Msa0228320:intron | 30.0% |
| TTAAGCTACATATCGCAATT+AGG | - | chr2_1:80247449-80247468 | None:intergenic | 30.0% | |
| GTTTGATCATGAATGATAGT+AGG | - | chr2_1:80247562-80247581 | None:intergenic | 30.0% | |
| TTGTACGATTTATGTATACG+TGG | + | chr2_1:80247861-80247880 | Msa0228320:three_prime_UTR | 30.0% | |
| TGTACGATTTATGTATACGT+GGG | + | chr2_1:80247862-80247881 | Msa0228320:three_prime_UTR | 30.0% | |
| !! | ATGAAGGAGTATCACAAGAT+AGG | + | chr2_1:80243910-80243929 | Msa0228320:CDS | 35.0% |
| AGTATCACAAGATAGGTTTG+TGG | + | chr2_1:80243917-80243936 | Msa0228320:CDS | 35.0% | |
| TAAAAGAGAGATTCGTTGTG+TGG | + | chr2_1:80243966-80243985 | Msa0228320:CDS | 35.0% | |
| ! | GGATGTTGTTGTTGTTGAAT+CGG | - | chr2_1:80244130-80244149 | None:intergenic | 35.0% |
| CTACCAATTTAAACCCATCT+AGG | + | chr2_1:80244166-80244185 | Msa0228320:CDS | 35.0% | |
| ! | GTACCTAGATGGGTTTAAAT+TGG | - | chr2_1:80244172-80244191 | None:intergenic | 35.0% |
| AAATAGGTACGTACCTAGAT+GGG | - | chr2_1:80244182-80244201 | None:intergenic | 35.0% | |
| TCACTGGAATATGGAGAATT+AGG | + | chr2_1:80244270-80244289 | Msa0228320:intron | 35.0% | |
| ! | GACTTTACTTTAGGAATAGG+AGG | + | chr2_1:80244292-80244311 | Msa0228320:intron | 35.0% |
| ! | CTGATTTTATCCTTCAACTG+GGG | + | chr2_1:80244579-80244598 | Msa0228320:intron | 35.0% |
| !! | CCCTAAACTTGTATTTTAGG+AGG | - | chr2_1:80245086-80245105 | None:intergenic | 35.0% |
| AACAATAGCTCAACACCTAA+AGG | - | chr2_1:80245285-80245304 | None:intergenic | 35.0% | |
| !!! | CAATATTTTAACTGGACACC+CGG | + | chr2_1:80245372-80245391 | Msa0228320:intron | 35.0% |
| ATGTGTCAAACACTCTTAAC+CGG | - | chr2_1:80245394-80245413 | None:intergenic | 35.0% | |
| ACAATCAACCTATCAAGCAT+GGG | - | chr2_1:80245457-80245476 | None:intergenic | 35.0% | |
| TCACACTCAAATATCTCAAG+GGG | - | chr2_1:80245648-80245667 | None:intergenic | 35.0% | |
| GTCACACTCAAATATCTCAA+GGG | - | chr2_1:80245649-80245668 | None:intergenic | 35.0% | |
| GATGCTAAGAAACTTCTACA+TGG | + | chr2_1:80245693-80245712 | Msa0228320:CDS | 35.0% | |
| AAAACAATGGGATAAGACAG+TGG | + | chr2_1:80245729-80245748 | Msa0228320:CDS | 35.0% | |
| !! | AAATCTGATGGTTCTGAAGT+TGG | + | chr2_1:80245778-80245797 | Msa0228320:CDS | 35.0% |
| AGGTAATACATCCGATTATG+GGG | + | chr2_1:80245899-80245918 | Msa0228320:intron | 35.0% | |
| TATCAATGCAACCCCATAAT+CGG | - | chr2_1:80245913-80245932 | None:intergenic | 35.0% | |
| TACAGAATGAGAAGTCAGAA+CGG | - | chr2_1:80246225-80246244 | None:intergenic | 35.0% | |
| ATCTTTGGTGAAACCTTGTT+AGG | + | chr2_1:80246336-80246355 | Msa0228320:intron | 35.0% | |
| GTATGTTCACATTCCTAACA+AGG | - | chr2_1:80246352-80246371 | None:intergenic | 35.0% | |
| CACGGCAGAATAAATATGTA+CGG | + | chr2_1:80246380-80246399 | Msa0228320:CDS | 35.0% | |
| ACGGCAGAATAAATATGTAC+GGG | + | chr2_1:80246381-80246400 | Msa0228320:CDS | 35.0% | |
| ! | ATTTCCGTGCATTTTTATGG+AGG | + | chr2_1:80246613-80246632 | Msa0228320:intron | 35.0% |
| TCACAAAACAGTCATGTCAT+AGG | - | chr2_1:80246708-80246727 | None:intergenic | 35.0% | |
| ATGAAACATTGTGATCTCAC+AGG | - | chr2_1:80246762-80246781 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGATGC+TGG | + | chr2_1:80246773-80246792 | Msa0228320:CDS | 35.0% | |
| ! | AATTTACAAGGCATCAGCAT+GGG | - | chr2_1:80247012-80247031 | None:intergenic | 35.0% |
| ! | TAATTTACAAGGCATCAGCA+TGG | - | chr2_1:80247013-80247032 | None:intergenic | 35.0% |
| GCACTTGAAATGAAAGAGAT+CGG | - | chr2_1:80247213-80247232 | None:intergenic | 35.0% | |
| ACAAACAATCCCTTGTGTAT+AGG | + | chr2_1:80247489-80247508 | Msa0228320:intron | 35.0% | |
| ! | ACTATTGGCTAACAACTTCT+TGG | - | chr2_1:80247626-80247645 | None:intergenic | 35.0% |
| !!! | TCACTCAGCTTTGTTTTGTT+TGG | - | chr2_1:80247762-80247781 | None:intergenic | 35.0% |
| CTCAACGTGACTCAAAAATT+TGG | + | chr2_1:80247928-80247947 | Msa0228320:three_prime_UTR | 35.0% | |
| GATGAACATCTATGGCAGTT+CGG | + | chr2_1:80244008-80244027 | Msa0228320:CDS | 40.0% | |
| ATGAACATCTATGGCAGTTC+GGG | + | chr2_1:80244009-80244028 | Msa0228320:CDS | 40.0% | |
| GAAATAGGTACGTACCTAGA+TGG | - | chr2_1:80244183-80244202 | None:intergenic | 40.0% | |
| AGGGCTTACAATAGTTTCAC+TGG | + | chr2_1:80244254-80244273 | Msa0228320:intron | 40.0% | |
| TGTCATCAATTGCAGAACCT+CGG | + | chr2_1:80244415-80244434 | Msa0228320:intron | 40.0% | |
| TTCATTTGTCACAATCTCCG+AGG | - | chr2_1:80244435-80244454 | None:intergenic | 40.0% | |
| AACCTTAGGTTTGCAGGATT+TGG | - | chr2_1:80244558-80244577 | None:intergenic | 40.0% | |
| ATCAGTAACCTTAGGTTTGC+AGG | - | chr2_1:80244564-80244583 | None:intergenic | 40.0% | |
| AATGTCTATACCCCAGTTGA+AGG | - | chr2_1:80244592-80244611 | None:intergenic | 40.0% | |
| ! | TTCTAACTTGCACAATGTGC+TGG | + | chr2_1:80244735-80244754 | Msa0228320:intron | 40.0% |
| ! | TCTAACTTGCACAATGTGCT+GGG | + | chr2_1:80244736-80244755 | Msa0228320:intron | 40.0% |
| CTGCATTTATGTCAGTGACT+AGG | - | chr2_1:80244765-80244784 | None:intergenic | 40.0% | |
| TCAACTAAATGCTGCTCAGA+TGG | - | chr2_1:80244988-80245007 | None:intergenic | 40.0% | |
| TAGGGACAAAGGATGAATAG+AGG | + | chr2_1:80245101-80245120 | Msa0228320:intron | 40.0% | |
| !! | TAGGTGTTGAGCTATTGTTG+AGG | + | chr2_1:80245286-80245305 | Msa0228320:intron | 40.0% |
| GTTTGTGTCTCAGCTGTATT+TGG | + | chr2_1:80245326-80245345 | Msa0228320:intron | 40.0% | |
| TGTGTCAAACACTCTTAACC+GGG | - | chr2_1:80245393-80245412 | None:intergenic | 40.0% | |
| GACAATCAACCTATCAAGCA+TGG | - | chr2_1:80245458-80245477 | None:intergenic | 40.0% | |
| GGTCACACTCAAATATCTCA+AGG | - | chr2_1:80245650-80245669 | None:intergenic | 40.0% | |
| CAAGTTAGCACGTATTCTCT+AGG | - | chr2_1:80245835-80245854 | None:intergenic | 40.0% | |
| CTAGAGAATACGTGCTAACT+TGG | + | chr2_1:80245833-80245852 | Msa0228320:CDS | 40.0% | |
| ACGTGCTAACTTGGAAATTG+TGG | + | chr2_1:80245842-80245861 | Msa0228320:CDS | 40.0% | |
| CGTGCTAACTTGGAAATTGT+GGG | + | chr2_1:80245843-80245862 | Msa0228320:CDS | 40.0% | |
| CTAACTTGGAAATTGTGGGA+GGG | + | chr2_1:80245847-80245866 | Msa0228320:CDS | 40.0% | |
| TAACTTGGAAATTGTGGGAG+GGG | + | chr2_1:80245848-80245867 | Msa0228320:CDS | 40.0% | |
| ! | ATGACAGGACAAAAAGTGCA+GGG | - | chr2_1:80246055-80246074 | None:intergenic | 40.0% |
| ! | AATGACAGGACAAAAAGTGC+AGG | - | chr2_1:80246056-80246075 | None:intergenic | 40.0% |
| CGTACATATTTATTCTGCCG+TGG | - | chr2_1:80246382-80246401 | None:intergenic | 40.0% | |
| !! | TTGAGTTTTTCAGATCTGGC+TGG | + | chr2_1:80246404-80246423 | Msa0228320:CDS | 40.0% |
| ! | TGACATGACTGTTTTGTGAC+TGG | + | chr2_1:80246709-80246728 | Msa0228320:intron | 40.0% |
| CTGGCGATTATTATAGTACC+TGG | + | chr2_1:80246728-80246747 | Msa0228320:intron | 40.0% | |
| !! | AGAAGATGCTGGTTTGAATG+TGG | + | chr2_1:80246784-80246803 | Msa0228320:CDS | 40.0% |
| ! | GCAAAACTGGCATTTTCCAA+AGG | + | chr2_1:80246812-80246831 | Msa0228320:CDS | 40.0% |
| !! | TGGCATTTTCCAAAGGCATA+TGG | + | chr2_1:80246819-80246838 | Msa0228320:CDS | 40.0% |
| TACAAAGCTCCATATGCCTT+TGG | - | chr2_1:80246831-80246850 | None:intergenic | 40.0% | |
| ! | ATGGAGCTTTGTATGCAAGA+TGG | + | chr2_1:80246838-80246857 | Msa0228320:CDS | 40.0% |
| GACTGAACTGTTAACTGAAC+TGG | - | chr2_1:80246906-80246925 | None:intergenic | 40.0% | |
| ATCAGCATGGGAAAATTGGA+AGG | - | chr2_1:80247000-80247019 | None:intergenic | 40.0% | |
| GCATGATGTATAACGTAGAC+AGG | - | chr2_1:80247159-80247178 | None:intergenic | 40.0% | |
| TTTCCTGCAACTGTGTTCTT+TGG | + | chr2_1:80247326-80247345 | Msa0228320:intron | 40.0% | |
| TTCCTGCAACTGTGTTCTTT+GGG | + | chr2_1:80247327-80247346 | Msa0228320:intron | 40.0% | |
| AATCCCTTGTGTATAGGTAC+CGG | + | chr2_1:80247495-80247514 | Msa0228320:intron | 40.0% | |
| AAGTGCGTGTGATATCAAGA+AGG | + | chr2_1:80247596-80247615 | Msa0228320:CDS | 40.0% | |
| TTGGCTAACAACTTCTTGGA+TGG | - | chr2_1:80247622-80247641 | None:intergenic | 40.0% | |
| CTAGGTGCTAAAGTTGCAAT+GGG | + | chr2_1:80247694-80247713 | Msa0228320:CDS | 40.0% | |
| !!! | ATTTTTGAGTCACGTTGAGC+TGG | - | chr2_1:80247927-80247946 | None:intergenic | 40.0% |
| AAGAGAGATTCGTTGTGTGG+AGG | + | chr2_1:80243969-80243988 | Msa0228320:CDS | 45.0% | |
| AGAGAGATTCGTTGTGTGGA+GGG | + | chr2_1:80243970-80243989 | Msa0228320:CDS | 45.0% | |
| TGCCAAATCCTGCAAACCTA+AGG | + | chr2_1:80244553-80244572 | Msa0228320:CDS | 45.0% | |
| TAGTGAACAAAGTGTGCCAG+AGG | - | chr2_1:80244799-80244818 | None:intergenic | 45.0% | |
| CTGAGCAGCATTTAGTTGAG+AGG | + | chr2_1:80244989-80245008 | Msa0228320:intron | 45.0% | |
| GTGTAAGGGTTGTGTCCTTT+AGG | + | chr2_1:80245267-80245286 | Msa0228320:intron | 45.0% | |
| !! | TCTCAGCTGTATTTGGTGCA+TGG | + | chr2_1:80245333-80245352 | Msa0228320:intron | 45.0% |
| GCTAACTTGGAAATTGTGGG+AGG | + | chr2_1:80245846-80245865 | Msa0228320:CDS | 45.0% | |
| TTCGCGACTGCTTTCTCATA+TGG | + | chr2_1:80245989-80246008 | Msa0228320:intron | 45.0% | |
| ! | TGACAGGACAAAAAGTGCAG+GGG | - | chr2_1:80246054-80246073 | None:intergenic | 45.0% |
| ! | GTGAACATACTTTGGCTCCA+CGG | + | chr2_1:80246362-80246381 | Msa0228320:CDS | 45.0% |
| !! | CGGGTTGAGTTTTTCAGATC+TGG | + | chr2_1:80246400-80246419 | Msa0228320:CDS | 45.0% |
| ATCTCACAGGCATTTCTACC+AGG | - | chr2_1:80246749-80246768 | None:intergenic | 45.0% | |
| !! | TGCTGGTTTGAATGTGGAGA+TGG | + | chr2_1:80246790-80246809 | Msa0228320:CDS | 45.0% |
| GAATGTGGAGATGGCAAAAC+TGG | + | chr2_1:80246799-80246818 | Msa0228320:CDS | 45.0% | |
| AGGCATCAGCATGGGAAAAT+TGG | - | chr2_1:80247004-80247023 | None:intergenic | 45.0% | |
| !! | AATTACGGGAGTGTTGCTTG+AGG | + | chr2_1:80247034-80247053 | Msa0228320:intron | 45.0% |
| TTCCCAAAGAACACAGTTGC+AGG | - | chr2_1:80247332-80247351 | None:intergenic | 45.0% | |
| GCTACATATCGCAATTAGGC+TGG | - | chr2_1:80247445-80247464 | None:intergenic | 45.0% | |
| AAGCCGGTACCTATACACAA+GGG | - | chr2_1:80247501-80247520 | None:intergenic | 45.0% | |
| GTACTAGATTCCAAGCAAGC+CGG | - | chr2_1:80247517-80247536 | None:intergenic | 45.0% | |
| !! | CCAATAGTGTGCTGCTTGTA+GGG | + | chr2_1:80247638-80247657 | Msa0228320:CDS | 45.0% |
| !! | CAATAGTGTGCTGCTTGTAG+GGG | + | chr2_1:80247639-80247658 | Msa0228320:CDS | 45.0% |
| !! | AATAGTGTGCTGCTTGTAGG+GGG | + | chr2_1:80247640-80247659 | Msa0228320:CDS | 45.0% |
| CCATTGCAACTTTAGCACCT+AGG | - | chr2_1:80247696-80247715 | None:intergenic | 45.0% | |
| CCTAGGTGCTAAAGTTGCAA+TGG | + | chr2_1:80247693-80247712 | Msa0228320:CDS | 45.0% | |
| GAGAGATTCGTTGTGTGGAG+GGG | + | chr2_1:80243971-80243990 | Msa0228320:CDS | 50.0% | |
| GGTAGAATCGGAGACGAAAG+AGG | - | chr2_1:80244151-80244170 | None:intergenic | 50.0% | |
| AACTTGCACAATGTGCTGGG+AGG | + | chr2_1:80244739-80244758 | Msa0228320:intron | 50.0% | |
| TGCAGAGTCAAACCATCCTC+TGG | + | chr2_1:80244780-80244799 | Msa0228320:intron | 50.0% | |
| GAACAAAGTGTGCCAGAGGA+TGG | - | chr2_1:80244795-80244814 | None:intergenic | 50.0% | |
| GTTGAGGCTGTGTGTCTAAG+AGG | + | chr2_1:80245302-80245321 | Msa0228320:intron | 50.0% | |
| !! | GAGAAGTGCCCATGCTTGAT+AGG | + | chr2_1:80245446-80245465 | Msa0228320:intron | 50.0% |
| TCTCCCTGGATGTTGCAGAA+TGG | + | chr2_1:80245622-80245641 | Msa0228320:intron | 50.0% | |
| GGTTGAGCACAATCAACTGC+AGG | + | chr2_1:80245750-80245769 | Msa0228320:CDS | 50.0% | |
| TGAGCACAATCAACTGCAGG+TGG | + | chr2_1:80245753-80245772 | Msa0228320:CDS | 50.0% | |
| CTGCAGGTGGACAAATCTGA+TGG | + | chr2_1:80245766-80245785 | Msa0228320:CDS | 50.0% | |
| TTGGAAATTGTGGGAGGGGA+AGG | + | chr2_1:80245852-80245871 | Msa0228320:CDS | 50.0% | |
| AAAGCAGTCGCGAACACATG+AGG | - | chr2_1:80245983-80246002 | None:intergenic | 50.0% | |
| AGTGCAGGGGAAGAGAAAGA+GGG | - | chr2_1:80246041-80246060 | None:intergenic | 50.0% | |
| AAGTGCAGGGGAAGAGAAAG+AGG | - | chr2_1:80246042-80246061 | None:intergenic | 50.0% | |
| TCTGGCTGGCGAATAAGACA+AGG | + | chr2_1:80246418-80246437 | Msa0228320:CDS | 50.0% | |
| GAAGATACTCTGCTGCAAGC+TGG | + | chr2_1:80246873-80246892 | Msa0228320:CDS | 50.0% | |
| CAAGCCGGTACCTATACACA+AGG | - | chr2_1:80247502-80247521 | None:intergenic | 50.0% | |
| !! | TGTATAGGTACCGGCTTGCT+TGG | + | chr2_1:80247504-80247523 | Msa0228320:intron | 50.0% |
| !! | GCCAATAGTGTGCTGCTTGT+AGG | + | chr2_1:80247637-80247656 | Msa0228320:CDS | 50.0% |
| CCCTACAAGCAGCACACTAT+TGG | - | chr2_1:80247641-80247660 | None:intergenic | 50.0% | |
| GGTGCAATATGTCTGTCACG+TGG | + | chr2_1:80247661-80247680 | Msa0228320:CDS | 50.0% | |
| AGATTCGTTGTGTGGAGGGG+AGG | + | chr2_1:80243974-80243993 | Msa0228320:CDS | 55.0% | |
| GGGCCATTCTGCAACATCCA+GGG | - | chr2_1:80245628-80245647 | None:intergenic | 55.0% | |
| AGAGAAAGAGGGCGGGGATA+TGG | - | chr2_1:80246030-80246049 | None:intergenic | 55.0% | |
| TCACGTGGTCACTCTAGCCT+AGG | + | chr2_1:80247676-80247695 | Msa0228320:CDS | 55.0% | |
| GGGGCCATTCTGCAACATCC+AGG | - | chr2_1:80245629-80245648 | None:intergenic | 60.0% | |
| AGGGGAAGAGAAAGAGGGCG+GGG | - | chr2_1:80246036-80246055 | None:intergenic | 60.0% | |
| CAGGGGAAGAGAAAGAGGGC+GGG | - | chr2_1:80246037-80246056 | None:intergenic | 60.0% | |
| GCAGGGGAAGAGAAAGAGGG+CGG | - | chr2_1:80246038-80246057 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 80243905 | 80248082 | 80243905 | ID=Msa0228320;Name=Msa0228320 |
| chr2_1 | mRNA | 80243905 | 80248082 | 80243905 | ID=Msa0228320-mRNA-1;Parent=Msa0228320;Name=Msa0228320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=5|1|1|1|1|1|6|305|409 |
| chr2_1 | exon | 80243905 | 80244187 | 80243905 | ID=Msa0228320-mRNA-1:exon:24321;Parent=Msa0228320-mRNA-1 |
| chr2_1 | exon | 80244430 | 80244574 | 80244430 | ID=Msa0228320-mRNA-1:exon:24322;Parent=Msa0228320-mRNA-1 |
| chr2_1 | exon | 80245640 | 80245900 | 80245640 | ID=Msa0228320-mRNA-1:exon:24323;Parent=Msa0228320-mRNA-1 |
| chr2_1 | exon | 80246358 | 80246439 | 80246358 | ID=Msa0228320-mRNA-1:exon:24324;Parent=Msa0228320-mRNA-1 |
| chr2_1 | exon | 80246744 | 80246940 | 80246744 | ID=Msa0228320-mRNA-1:exon:24325;Parent=Msa0228320-mRNA-1 |
| chr2_1 | exon | 80247511 | 80248082 | 80247511 | ID=Msa0228320-mRNA-1:exon:24326;Parent=Msa0228320-mRNA-1 |
| chr2_1 | five_prime_UTR | 80243905 | 80243909 | 80243905 | ID=Msa0228320-mRNA-1:five_prime_utr;Parent=Msa0228320-mRNA-1 |
| chr2_1 | CDS | 80243910 | 80244187 | 80243910 | ID=Msa0228320-mRNA-1:cds;Parent=Msa0228320-mRNA-1 |
| chr2_1 | CDS | 80244430 | 80244574 | 80244430 | ID=Msa0228320-mRNA-1:cds;Parent=Msa0228320-mRNA-1 |
| chr2_1 | CDS | 80245640 | 80245900 | 80245640 | ID=Msa0228320-mRNA-1:cds;Parent=Msa0228320-mRNA-1 |
| chr2_1 | CDS | 80246358 | 80246439 | 80246358 | ID=Msa0228320-mRNA-1:cds;Parent=Msa0228320-mRNA-1 |
| chr2_1 | CDS | 80246744 | 80246940 | 80246744 | ID=Msa0228320-mRNA-1:cds;Parent=Msa0228320-mRNA-1 |
| chr2_1 | CDS | 80247511 | 80247777 | 80247511 | ID=Msa0228320-mRNA-1:cds;Parent=Msa0228320-mRNA-1 |
| chr2_1 | three_prime_UTR | 80247778 | 80248082 | 80247778 | ID=Msa0228320-mRNA-1:three_prime_utr;Parent=Msa0228320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
