AlfalfaGEDB | Msa0190710

M. sativa cultivar zhongmu-4 / Msa0190710

KEGG: -
GO: -
PFAM: PF03737.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190710	XP_013462438.1	96.988	166	5	0	1	166	1	166	1.89e-114	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190710	sp\|Q9FH13\|RRAA3_ARATH	75.301	166	41	0	1	166	1	166	1.58e-89	261

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190710	A0A072V558	96.988	166	5	0	1	166	1	166	9.03e-115	331

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa0190710	0.843986	9.997045e-59	-8.615850e-47
Msa0002700	Msa0190710	0.847121	1.413022e-59	-8.615850e-47
Msa0005500	Msa0190710	0.859447	4.110052e-63	-8.615850e-47
Msa0011410	Msa0190710	0.809877	1.522394e-50	-8.615850e-47
Msa0021570	Msa0190710	0.842384	2.672492e-58	-8.615850e-47
Msa0030710	Msa0190710	0.822313	2.532706e-53	-8.615850e-47
Msa0035090	Msa0190710	0.831652	1.478322e-55	-8.615850e-47
Msa0038860	Msa0190710	0.817622	2.997602e-52	-8.615850e-47
Msa0044700	Msa0190710	0.808559	2.918604e-50	-8.615850e-47
Msa0046020	Msa0190710	0.814059	1.868322e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190710	MtrunA17_Chr2g0280471	96.988	166	5	0	1	166	1	166	1.74e-118	331
Msa0190710	MtrunA17_Chr2g0280451	86.747	166	22	0	1	166	1	166	6.79e-105	297
Msa0190710	MtrunA17_Chr7g0249341	56.627	166	53	1	1	166	1	147	4.82e-64	193

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190710	AT5G56260.1	75.301	166	41	1	166	1	166	1.61e-90	261
Msa0190710	AT5G56260.2	75.301	166	41	1	166	1	166	1.61e-90	261
Msa0190710	AT5G56260.5	75.301	166	41	1	166	1	166	1.61e-90	261
Msa0190710	AT5G56260.4	75.301	166	41	1	166	33	198	1.07e-89	260
Msa0190710	AT5G56260.3	75.301	166	41	1	166	33	198	1.07e-89	260
Msa0190710	AT3G02770.1	65.060	166	58	1	166	1	166	9.65e-78	229
Msa0190710	AT5G16450.2	65.060	166	58	1	166	1	166	1.48e-77	228
Msa0190710	AT5G16450.1	65.060	166	58	1	166	1	166	1.48e-77	228

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Find 37 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAAGGAAGAGTTT+TGG	0.387441	2_1:+6240069	Msa0190710:CDS
AAACATGTTGCTGTTTATGT+TGG	0.508506	2_1:+6240286	Msa0190710:CDS
AACGCAACACATTTAACAAA+TGG	0.449158	2_1:+6239926	Msa0190710:CDS
ACCTCTAGTACTATTTCAAA+TGG	0.429193	2_1:-6240383	None:intergenic
AGAGAACTTCTTGAAACAAA+AGG	0.491488	2_1:+6240052	Msa0190710:CDS
AGCATGAGGTGTGCTCTTGT+TGG	0.557997	2_1:+6240109	Msa0190710:CDS
AGTGTTTGAAGACAATGTGT+TGG	0.617013	2_1:+6240027	Msa0190710:CDS
AGTTGGCACAAAACATGGGG+TGG	0.672135	2_1:+6240146	Msa0190710:CDS
ATGAGGTGTGCTCTTGTTGG+AGG	0.569564	2_1:+6240112	Msa0190710:CDS
ATTTAACAAATGGTGACTTG+AGG	0.616446	2_1:+6239936	Msa0190710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGCAACACATTTAACAAA+TGG	+	chr2_1:6239926-6239945	Msa0190710:CDS	30.0%
ATTTAACAAATGGTGACTTG+AGG	+	chr2_1:6239936-6239955	Msa0190710:CDS	30.0%
AGAGAACTTCTTGAAACAAA+AGG	+	chr2_1:6240052-6240071	Msa0190710:CDS	30.0%
AAATCCAATAAAAACGGTAC+TGG	+	chr2_1:6240259-6240278	Msa0190710:CDS	30.0%
AGTGTTTGAAGACAATGTGT+TGG	+	chr2_1:6240027-6240046	Msa0190710:CDS	35.0%
CTTCTTGAAACAAAAGGAGA+AGG	+	chr2_1:6240058-6240077	Msa0190710:CDS	35.0%
GAATGGTTGTATTAGAGATG+TGG	+	chr2_1:6240183-6240202	Msa0190710:CDS	35.0%
TCAAATGGACAACTCAAACT+TGG	-	chr2_1:6240371-6240390	None:intergenic	35.0%
GTGTCACATATCTCTGCTGT+TGG	-	chr2_1:6239905-6239924	None:intergenic	45.0%
CATCCAGTGTTCCAGATGTA+TGG	+	chr2_1:6239965-6239984	Msa0190710:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	6239890	6240390	6239890	ID=Msa0190710;Name=Msa0190710
chr2_1	mRNA	6239890	6240390	6239890	ID=Msa0190710-mRNA-1;Parent=Msa0190710;Name=Msa0190710-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|166
chr2_1	exon	6239890	6240390	6239890	ID=Msa0190710-mRNA-1:exon:2814;Parent=Msa0190710-mRNA-1
chr2_1	CDS	6239890	6240390	6239890	ID=Msa0190710-mRNA-1:cds;Parent=Msa0190710-mRNA-1

Gene Sequence

>Msa0190710

ATGGATTCTCTACCAACAGCAGAGATATGTGACACAAACGCAACACATTTAACAAATGGTGACTTGAGGATACTTCATCCAGTGTTCCAGATGTATGGCCAGTCTCGGGCATTCTCGGGGCCTGTTGTTACCGTAAAAGTGTTTGAAGACAATGTGTTGGTAAGAGAACTTCTTGAAACAAAAGGAGAAGGAAGAGTTTTGGTTATTGATGGAGGAGGAAGCATGAGGTGTGCTCTTGTTGGAGGGAATTTGGTGCAGTTGGCACAAAACATGGGGTGGTCTGGGATTGTTGTGAATGGTTGTATTAGAGATGTGGATGAGATTAATTTGTGTCAAGTTGGTGTTAGAGCTTTGGCTTCTCATCCACTTAAATCCAATAAAAACGGTACTGGTGAAAAACATGTTGCTGTTTATGTTGGAGGAACTTTTATTCGTGATGGAGAATGGCTCTATGCAGATAATGATGGTATCATTGTATCCAAGTTTGAGTTGTCCATTTGA

Protein sequence

>Msa0190710

MDSLPTAEICDTNATHLTNGDLRILHPVFQMYGQSRAFSGPVVTVKVFEDNVLVRELLETKGEGRVLVIDGGGSMRCALVGGNLVQLAQNMGWSGIVVNGCIRDVDEINLCQVGVRALASHPLKSNKNGTGEKHVAVYVGGTFIRDGEWLYADNDGIIVSKFELSI*