AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190320 MtrunA17_Chr8g0358961 94.273 227 13 0 1 227 1 227 1.08e-164 453
Msa1190320 MtrunA17_Chr4g0058821 41.111 180 97 4 39 215 23 196 3.25e-32 116
Msa1190320 MtrunA17_Chr8g0368391 34.135 208 123 5 13 215 5 203 1.58e-30 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190320 AT1G17100.1 60.891 202 74 2 25 221 30 231 1.99e-89 263
Msa1190320 AT1G78450.1 47.768 224 104 4 4 222 1 216 1.38e-69 213
Msa1190320 AT1G78460.1 44.385 187 96 3 35 220 40 219 3.75e-49 160

Find 113 sgRNAs with CRISPR-Local

Find 552 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCAAAACTTTGCCTTAT+TGG 0.137774 8_1:-33200071 Msa1190330:CDS
ATTCCTCCAGAGAACCTTTC+TGG 0.180535 8_1:+33200157 Msa1190320:three_prime_UTR
CAGAATGGTAAATTGATAAA+AGG 0.212029 8_1:-33196381 None:intergenic
TCAAAAGTTGATATATTTAT+AGG 0.215933 8_1:-33200421 Msa1190330:intron
CTTATCTCAATTTCATTATC+AGG 0.236313 8_1:+33196487 Msa1190320:CDS
AAGCTACTAGAACTGGTTTC+AGG 0.240236 8_1:+33196656 Msa1190320:CDS
TTCTTGTTTGATTTGGAAAA+TGG 0.250380 8_1:+33198031 Msa1190320:CDS
TACTACTTTGGCTTCCAATA+AGG 0.270800 8_1:+33200057 Msa1190320:three_prime_UTR
GACGTTATAATTCGTCTGTT+TGG 0.282437 8_1:+33196596 Msa1190320:CDS
CGGATCTTAGCCCCGTGTTT+TGG 0.297729 8_1:+33199953 Msa1190320:three_prime_UTR
TAGGCTATTTGATTACATTC+AGG 0.303343 8_1:+33197631 Msa1190320:intron
TAATTCAGTAATAAGTGTTT+TGG 0.305738 8_1:+33198269 Msa1190320:three_prime_UTR
GGATTTGCTTGGTTCACTTT+TGG 0.319811 8_1:-33197764 None:intergenic
TTCACCATGACTGTGATATA+TGG 0.320687 8_1:-33200204 Msa1190330:CDS
GATATGGTTCTTGTTTGATT+TGG 0.325272 8_1:+33198024 Msa1190320:CDS
TGTTTCCATACCGATACTTT+TGG 0.342478 8_1:-33200227 Msa1190330:CDS
TGAACATGAAGACCCTTTGC+AGG 0.347285 8_1:-33197791 None:intergenic
AATGTCTTGAATAGGAGAAT+TGG 0.347748 8_1:-33196623 None:intergenic
TATGCAGCAGTTAGACAATT+TGG 0.366995 8_1:+33197830 Msa1190320:CDS
AACTTACATAACATACTATC+TGG 0.380641 8_1:-33198101 None:intergenic
CTTGTTGAAGCTACTAGAAC+TGG 0.386778 8_1:+33196649 Msa1190320:CDS
ACAAATGAAGACTCACAAAA+TGG 0.387846 8_1:-33197725 None:intergenic
TTATTCCTGCAGGTAGTGAT+AGG 0.388666 8_1:+33200251 Msa1190320:three_prime_UTR
ACCCTATTATCGTATTCAAA+AGG 0.389319 8_1:-33197995 None:intergenic
AGCTTCTATGACATCATAGT+TGG 0.390370 8_1:-33196554 None:intergenic
CTGAAGCATGACCAGCTCTA+TGG 0.399888 8_1:-33197946 None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG 0.403479 8_1:-33196631 None:intergenic
CCCTATTATCGTATTCAAAA+GGG 0.409052 8_1:-33197994 None:intergenic
ACAGCCATGGATTGCATGCT+TGG 0.416699 8_1:-33196427 None:intergenic
AGAATGGTAAATTGATAAAA+GGG 0.418250 8_1:-33196380 None:intergenic
TACTATCTGGAATTTGTGAA+TGG 0.426802 8_1:-33198088 None:intergenic
TTTAAACCAGAAAGGTTCTC+TGG 0.435887 8_1:-33200163 Msa1190330:CDS
GAATTAATTGATCATGCCTT+CGG 0.437522 8_1:-33198481 None:intergenic
TTCTCAAATATTGATGTGGC+AGG 0.445417 8_1:+33198501 Msa1190320:three_prime_UTR
AGGCTATTTGATTACATTCA+GGG 0.450840 8_1:+33197632 Msa1190320:intron
TGAAGACCCTTTGCAGGTGG+TGG 0.452104 8_1:-33197785 None:intergenic
GGAGTTTGTGAATTATGTTA+AGG 0.453586 8_1:-33196406 None:intergenic
TTGCAGGTGGTGGATTTGCT+TGG 0.453762 8_1:-33197775 None:intergenic
CTTCCAATAAGGCAAAGTTT+TGG 0.453837 8_1:+33200068 Msa1190320:three_prime_UTR
AACTATGATGTCATAGAAGC+TGG 0.463929 8_1:+33196556 Msa1190320:CDS
TATAAAACCATGGTCACCTA+TGG 0.467635 8_1:+33200346 Msa1190320:three_prime_UTR
GTTCTAGGACCCCATCCAAA+TGG 0.468767 8_1:+33200100 Msa1190320:three_prime_UTR
TCACCATGACTGTGATATAT+GGG 0.470077 8_1:-33200203 Msa1190330:CDS
GCGTTGAAGGACAGTATTGC+CGG 0.472222 8_1:+33197893 Msa1190320:CDS
ATAATAGGGTGAATGAGATA+TGG 0.475621 8_1:+33198008 Msa1190320:CDS
TGAGCTAGCATCAGCGTTGA+AGG 0.486594 8_1:+33197880 Msa1190320:CDS
CAAAAGAGTTTAAACCAGAA+AGG 0.488467 8_1:-33200171 Msa1190330:CDS
GATGTCATAGAAGCTGGAAA+TGG 0.490076 8_1:+33196562 Msa1190320:CDS
TGAATTGATAAATAAAGTGC+AGG 0.491035 8_1:+33198181 Msa1190320:three_prime_UTR
ATGGAAACATTTATTCCTGC+AGG 0.491928 8_1:+33200241 Msa1190320:three_prime_UTR
GCAGAATCCCATATAAATGA+TGG 0.499567 8_1:-33198530 None:intergenic
AGCAAATCCACCACCTGCAA+AGG 0.503511 8_1:+33197778 Msa1190320:CDS
AGGCTCACACTTGGTACCAT+TGG 0.503980 8_1:-33198370 None:intergenic
TTCTAGGACCCCATCCAAAT+GGG 0.504793 8_1:+33200101 Msa1190320:three_prime_UTR
CCATGGTTGCTTGGAAGGAA+AGG 0.505085 8_1:-33198390 None:intergenic
GGAATTGCAAAGGCCACAAA+AGG 0.506652 8_1:-33200139 Msa1190330:CDS
AGGGTCTTCATGTTCAAAGA+TGG 0.509198 8_1:+33197798 Msa1190320:CDS
CTTTCTTTGCAGCCAAAACA+CGG 0.514214 8_1:-33199965 Msa1190330:CDS
CTCACACTTGGTACCATTGG+TGG 0.515165 8_1:-33198367 None:intergenic
TAATTGATCATGCCTTCGGT+TGG 0.517033 8_1:-33198477 None:intergenic
CTGTTGGTGGATATAATCTC+AGG 0.519172 8_1:+33200317 Msa1190320:three_prime_UTR
AAGTAGTGACAATACTACTT+TGG 0.522266 8_1:+33200045 Msa1190320:three_prime_UTR
TTTCTTTGCAGCCAAAACAC+GGG 0.530148 8_1:-33199964 Msa1190330:CDS
TGTAGGTTGCCATGGTTGCT+TGG 0.530659 8_1:-33198399 None:intergenic
GTGAACCAAAAGTATCGGTA+TGG 0.532886 8_1:+33200222 Msa1190320:three_prime_UTR
TGTTGTGGTGGTTACAGCCA+TGG 0.533600 8_1:-33196440 None:intergenic
GGTTGCCATGGTTGCTTGGA+AGG 0.534058 8_1:-33198395 None:intergenic
GGTAAGACTTCAGAGAGAAC+AGG 0.536541 8_1:-33197692 None:intergenic
CGAACTAAGAAAACTGTTGG+TGG 0.543941 8_1:+33200304 Msa1190320:three_prime_UTR
AACTCCAAGCATGCAATCCA+TGG 0.545237 8_1:+33196423 Msa1190320:exon
GGACACTCTATGCGTTTGCA+TGG 0.549178 8_1:-33196532 None:intergenic
GCAAATCCACCACCTGCAAA+GGG 0.549447 8_1:+33197779 Msa1190320:CDS
GCTTCTATGACATCATAGTT+GGG 0.553146 8_1:-33196553 None:intergenic
TCACAAAATGGTCCATCACT+TGG 0.562399 8_1:-33197713 None:intergenic
TCTGAAGTCTTACCAAGTGA+TGG 0.564116 8_1:+33197701 Msa1190320:CDS
TGCCTTAAAATCTTTCCAAG+TGG 0.564221 8_1:+33198324 Msa1190320:three_prime_UTR
GGAGAAAGTGTAGGTTGCCA+TGG 0.567270 8_1:-33198407 None:intergenic
GCAGCAGTTAGACAATTTGG+TGG 0.569529 8_1:+33197833 Msa1190320:CDS
GGCTATTTGATTACATTCAG+GGG 0.574090 8_1:+33197633 Msa1190320:intron
GCTCGAACTAAGAAAACTGT+TGG 0.579739 8_1:+33200301 Msa1190320:three_prime_UTR
TTTGTCAAAGATACAGATGT+TGG 0.582094 8_1:+33197857 Msa1190320:CDS
TCATGGTGAACCAAAAGTAT+CGG 0.588312 8_1:+33200217 Msa1190320:three_prime_UTR
AGCAGAAGACCACTTAGTAC+CGG 0.588835 8_1:-33197912 None:intergenic
AATTATGTTAAGGAACAGAA+TGG 0.589911 8_1:-33196396 None:intergenic
TGGAAGGAAAGGCTCACACT+TGG 0.591600 8_1:-33198379 None:intergenic
TGGGGTCCTAGAACATGCAT+TGG 0.593187 8_1:-33200091 Msa1190330:CDS
TTAATTCTCAAATATTGATG+TGG 0.595008 8_1:+33198497 Msa1190320:three_prime_UTR
TCACACTTGGTACCATTGGT+GGG 0.597286 8_1:-33198366 None:intergenic
ATTGAACAAAGCCATAGAGC+TGG 0.606780 8_1:+33197935 Msa1190320:CDS
CGATGACAAGGAGAAAGTGT+AGG 0.608595 8_1:-33198416 None:intergenic
CCTTTCCTTCCAAGCAACCA+TGG 0.611308 8_1:+33198390 Msa1190320:three_prime_UTR
ACAGTATTGCCGGTACTAAG+TGG 0.612734 8_1:+33197903 Msa1190320:CDS
CAATATATTTGTCCAACCGA+AGG 0.614323 8_1:+33198465 Msa1190320:three_prime_UTR
GGAAACCTATCACTACCTGC+AGG 0.614488 8_1:-33200256 Msa1190330:CDS
CAGTGAGAGCTTCCATGTTG+TGG 0.619405 8_1:-33196455 None:intergenic
TGCAAAGAAAGGATAGCAGT+GGG 0.620612 8_1:+33199977 Msa1190320:three_prime_UTR
ATGTTCCCTAAAATTCCACT+TGG 0.621066 8_1:-33198339 None:intergenic
CCTATTATCGTATTCAAAAG+GGG 0.621839 8_1:-33197993 None:intergenic
TATGGGATTCTGCTTTGTCG+CGG 0.622393 8_1:+33198540 Msa1190320:three_prime_UTR
CACCCCATATATCACAGTCA+TGG 0.625790 8_1:+33200200 Msa1190320:three_prime_UTR
CATGCTTATAGTCTGCAGAA+AGG 0.626291 8_1:+33200002 Msa1190320:three_prime_UTR
TGGCTGTAACCACCACAACA+TGG 0.629806 8_1:+33196443 Msa1190320:CDS
CTGCAAAGAAAGGATAGCAG+TGG 0.631280 8_1:+33199976 Msa1190320:three_prime_UTR
AAACCAGAAAGGTTCTCTGG+AGG 0.634600 8_1:-33200160 Msa1190330:CDS
TTCTTTGCAGCCAAAACACG+GGG 0.635892 8_1:-33199963 Msa1190330:CDS
GTTCTCTGGAGGAATTGCAA+AGG 0.650068 8_1:-33200149 Msa1190330:CDS
TGAGAGCTTCCATGTTGTGG+TGG 0.652258 8_1:-33196452 None:intergenic
GGGAACATCAGTCCCACCAA+TGG 0.655526 8_1:+33198354 Msa1190320:three_prime_UTR
CTACTAGAACTGGTTTCAGG+AGG 0.662955 8_1:+33196659 Msa1190320:CDS
ATTGAATTGAATCGATGACA+AGG 0.668060 8_1:-33198428 None:intergenic
CAGGACCTCATATAAAACCA+TGG 0.671962 8_1:+33200336 Msa1190320:three_prime_UTR
CACCATGACTGTGATATATG+GGG 0.697286 8_1:-33200202 Msa1190330:CDS
ACATGAAGACCCTTTGCAGG+TGG 0.699868 8_1:-33197788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATAATTTTTTTTTTTA+GGG + chr8_1:33198746-33198765 Msa1190320:intron 0.0%
!!! ATAAATAATTTTTTTTTTTA+GGG + chr8_1:33198746-33198765 Msa1190320:intron 0.0%
!! TAATTTATTAATAAAACTCA+TGG + chr8_1:33198836-33198855 Msa1190320:intron 10.0%
!!! GTAAAAAAAAATTTAAAACT+TGG - chr8_1:33200280-33200299 Msa1190330:CDS 10.0%
!! TAATTTATTAATAAAACTCA+TGG + chr8_1:33198836-33198855 Msa1190320:intron 10.0%
!!! GTAAAAAAAAATTTAAAACT+TGG - chr8_1:33200280-33200299 Msa1190330:CDS 10.0%
!! AAAGTTGAATACATATAAAA+GGG + chr8_1:33196900-33196919 Msa1190320:intron 15.0%
!! ATCAAATATACAACAAATTA+AGG + chr8_1:33198895-33198914 Msa1190320:intron 15.0%
!! GTAATATCAATAAAATGTTT+CGG - chr8_1:33199064-33199083 None:intergenic 15.0%
!!! AGTTTTATCAATAAATTAGT+TGG - chr8_1:33199651-33199670 Msa1190330:three_prime_UTR 15.0%
!! TAATTTATTGATAAAACTCA+CGG + chr8_1:33199653-33199672 Msa1190320:intron 15.0%
!! TATCAAAAAATTGTTACATT+TGG - chr8_1:33199917-33199936 Msa1190330:three_prime_UTR 15.0%
!!! TCAAAAGTTGATATATTTAT+AGG - chr8_1:33200424-33200443 Msa1190330:intron 15.0%
!! AAAGTTGAATACATATAAAA+GGG + chr8_1:33196900-33196919 Msa1190320:intron 15.0%
!! ATCAAATATACAACAAATTA+AGG + chr8_1:33198895-33198914 Msa1190320:intron 15.0%
!! GTAATATCAATAAAATGTTT+CGG - chr8_1:33199064-33199083 None:intergenic 15.0%
!!! AGTTTTATCAATAAATTAGT+TGG - chr8_1:33199651-33199670 Msa1190330:three_prime_UTR 15.0%
!! TAATTTATTGATAAAACTCA+CGG + chr8_1:33199653-33199672 Msa1190320:intron 15.0%
!! TATCAAAAAATTGTTACATT+TGG - chr8_1:33199917-33199936 Msa1190330:three_prime_UTR 15.0%
!!! TCAAAAGTTGATATATTTAT+AGG - chr8_1:33200424-33200443 Msa1190330:intron 15.0%
!! AGAATGGTAAATTGATAAAA+GGG - chr8_1:33196383-33196402 None:intergenic 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG + chr8_1:33196701-33196720 Msa1190320:intron 20.0%
!! GAAAGTTGAATACATATAAA+AGG + chr8_1:33196899-33196918 Msa1190320:intron 20.0%
!! AATGTGAAATGATTTATACT+TGG + chr8_1:33197332-33197351 Msa1190320:intron 20.0%
!!! AAATTAATCATCTCTAGAAT+TGG - chr8_1:33197409-33197428 None:intergenic 20.0%
!!! TCAATCTTTTTCTTTTTCTT+AGG + chr8_1:33197612-33197631 Msa1190320:intron 20.0%
!!! TAATTCAGTAATAAGTGTTT+TGG + chr8_1:33198269-33198288 Msa1190320:three_prime_UTR 20.0%
!! TTAATTCTCAAATATTGATG+TGG + chr8_1:33198497-33198516 Msa1190320:three_prime_UTR 20.0%
!! CTGAAAAATTTGAATCTTAT+CGG - chr8_1:33198577-33198596 None:intergenic 20.0%
!! GAAATACCAATGATAAATAT+TGG + chr8_1:33198768-33198787 Msa1190320:intron 20.0%
!! ATTAGAATAAGAGAAGAAAA+AGG - chr8_1:33198973-33198992 None:intergenic 20.0%
!!! TTAGTTGGTATTATTTAGTA+AGG - chr8_1:33199636-33199655 Msa1190330:three_prime_UTR 20.0%
!! ATAGAATATACAAAGTAAGA+TGG + chr8_1:33199714-33199733 Msa1190320:intron 20.0%
!! AGAATGGTAAATTGATAAAA+GGG - chr8_1:33196383-33196402 None:intergenic 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG + chr8_1:33196701-33196720 Msa1190320:intron 20.0%
!! GAAAGTTGAATACATATAAA+AGG + chr8_1:33196899-33196918 Msa1190320:intron 20.0%
!! AATGTGAAATGATTTATACT+TGG + chr8_1:33197332-33197351 Msa1190320:intron 20.0%
!!! AAATTAATCATCTCTAGAAT+TGG - chr8_1:33197409-33197428 None:intergenic 20.0%
!!! TCAATCTTTTTCTTTTTCTT+AGG + chr8_1:33197612-33197631 Msa1190320:intron 20.0%
!!! TAATTCAGTAATAAGTGTTT+TGG + chr8_1:33198269-33198288 Msa1190320:three_prime_UTR 20.0%
!! TTAATTCTCAAATATTGATG+TGG + chr8_1:33198497-33198516 Msa1190320:three_prime_UTR 20.0%
!! CTGAAAAATTTGAATCTTAT+CGG - chr8_1:33198577-33198596 None:intergenic 20.0%
!! GAAATACCAATGATAAATAT+TGG + chr8_1:33198768-33198787 Msa1190320:intron 20.0%
!! ATTAGAATAAGAGAAGAAAA+AGG - chr8_1:33198973-33198992 None:intergenic 20.0%
!!! TTAGTTGGTATTATTTAGTA+AGG - chr8_1:33199636-33199655 Msa1190330:three_prime_UTR 20.0%
!! ATAGAATATACAAAGTAAGA+TGG + chr8_1:33199714-33199733 Msa1190320:intron 20.0%
!!! TGATAAAAGGGTTTTTTCTA+TGG - chr8_1:33196371-33196390 None:intergenic 25.0%
! CAGAATGGTAAATTGATAAA+AGG - chr8_1:33196384-33196403 None:intergenic 25.0%
! AATTATGTTAAGGAACAGAA+TGG - chr8_1:33196399-33196418 None:intergenic 25.0%
! CTTATCTCAATTTCATTATC+AGG + chr8_1:33196487-33196506 Msa1190320:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr8_1:33197000-33197019 None:intergenic 25.0%
! TTTAGTGTAATTACAAGTGT+CGG + chr8_1:33197032-33197051 Msa1190320:intron 25.0%
! AACTAATTCTAACTTGAAGT+TGG - chr8_1:33197124-33197143 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG - chr8_1:33197445-33197464 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG + chr8_1:33197448-33197467 Msa1190320:intron 25.0%
! TGAACTTATTGATCATTCAT+TGG - chr8_1:33197518-33197537 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG + chr8_1:33197552-33197571 Msa1190320:intron 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG + chr8_1:33198031-33198050 Msa1190320:CDS 25.0%
! AACTTACATAACATACTATC+TGG - chr8_1:33198104-33198123 None:intergenic 25.0%
! TGAATTGATAAATAAAGTGC+AGG + chr8_1:33198181-33198200 Msa1190320:three_prime_UTR 25.0%
!! CGATAAGATTCAAATTTTTC+AGG + chr8_1:33198575-33198594 Msa1190320:three_prime_UTR 25.0%
! TAATTATCGTGACAAGAAAA+AGG - chr8_1:33198691-33198710 None:intergenic 25.0%
! TACCAATGATAAATATTGGT+TGG + chr8_1:33198772-33198791 Msa1190320:intron 25.0%
! TACCAACCAATATTTATCAT+TGG - chr8_1:33198777-33198796 None:intergenic 25.0%
! AAATTAAGGAAAGCTGTAAA+GGG + chr8_1:33198909-33198928 Msa1190320:intron 25.0%
! ATATCAATAAAATGTTTCGG+TGG - chr8_1:33199061-33199080 None:intergenic 25.0%
! AATCGTATAACATACATTTG+AGG + chr8_1:33199242-33199261 Msa1190320:intron 25.0%
! AATGATATGATGTACAAATC+CGG + chr8_1:33199435-33199454 Msa1190320:intron 25.0%
! GAAAAAATGCAATTCAAATC+CGG - chr8_1:33199457-33199476 Msa1190330:three_prime_UTR 25.0%
! ATGATGTTAACTGTATGAAT+AGG - chr8_1:33199520-33199539 Msa1190330:three_prime_UTR 25.0%
! TATACAAAGTAAGATGGAAA+AGG + chr8_1:33199720-33199739 Msa1190320:intron 25.0%
! TAAGTGTTTGTGATAATTTC+TGG - chr8_1:33199757-33199776 Msa1190330:three_prime_UTR 25.0%
!!! TACCATAACATTTTTTCCAT+AGG - chr8_1:33200365-33200384 Msa1190330:intron 25.0%
! GTATAAGTTAGCAACAAAAA+AGG + chr8_1:33200382-33200401 Msa1190320:three_prime_UTR 25.0%
!!! TGATAAAAGGGTTTTTTCTA+TGG - chr8_1:33196371-33196390 None:intergenic 25.0%
! CAGAATGGTAAATTGATAAA+AGG - chr8_1:33196384-33196403 None:intergenic 25.0%
! AATTATGTTAAGGAACAGAA+TGG - chr8_1:33196399-33196418 None:intergenic 25.0%
! CTTATCTCAATTTCATTATC+AGG + chr8_1:33196487-33196506 Msa1190320:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr8_1:33197000-33197019 None:intergenic 25.0%
! TTTAGTGTAATTACAAGTGT+CGG + chr8_1:33197032-33197051 Msa1190320:intron 25.0%
! AACTAATTCTAACTTGAAGT+TGG - chr8_1:33197124-33197143 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG - chr8_1:33197445-33197464 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG + chr8_1:33197448-33197467 Msa1190320:intron 25.0%
! TGAACTTATTGATCATTCAT+TGG - chr8_1:33197518-33197537 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG + chr8_1:33197552-33197571 Msa1190320:intron 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG + chr8_1:33198031-33198050 Msa1190320:CDS 25.0%
! AACTTACATAACATACTATC+TGG - chr8_1:33198104-33198123 None:intergenic 25.0%
! TGAATTGATAAATAAAGTGC+AGG + chr8_1:33198181-33198200 Msa1190320:three_prime_UTR 25.0%
!! CGATAAGATTCAAATTTTTC+AGG + chr8_1:33198575-33198594 Msa1190320:three_prime_UTR 25.0%
! TAATTATCGTGACAAGAAAA+AGG - chr8_1:33198691-33198710 None:intergenic 25.0%
! TACCAATGATAAATATTGGT+TGG + chr8_1:33198772-33198791 Msa1190320:intron 25.0%
! TACCAACCAATATTTATCAT+TGG - chr8_1:33198777-33198796 None:intergenic 25.0%
! AAATTAAGGAAAGCTGTAAA+GGG + chr8_1:33198909-33198928 Msa1190320:intron 25.0%
! ATATCAATAAAATGTTTCGG+TGG - chr8_1:33199061-33199080 None:intergenic 25.0%
! AATCGTATAACATACATTTG+AGG + chr8_1:33199242-33199261 Msa1190320:intron 25.0%
! AATGATATGATGTACAAATC+CGG + chr8_1:33199435-33199454 Msa1190320:intron 25.0%
! GAAAAAATGCAATTCAAATC+CGG - chr8_1:33199457-33199476 Msa1190330:three_prime_UTR 25.0%
! ATGATGTTAACTGTATGAAT+AGG - chr8_1:33199520-33199539 Msa1190330:three_prime_UTR 25.0%
! TATACAAAGTAAGATGGAAA+AGG + chr8_1:33199720-33199739 Msa1190320:intron 25.0%
! TAAGTGTTTGTGATAATTTC+TGG - chr8_1:33199757-33199776 Msa1190330:three_prime_UTR 25.0%
!!! TACCATAACATTTTTTCCAT+AGG - chr8_1:33200365-33200384 Msa1190330:intron 25.0%
! GTATAAGTTAGCAACAAAAA+AGG + chr8_1:33200382-33200401 Msa1190320:three_prime_UTR 25.0%
GGAGTTTGTGAATTATGTTA+AGG - chr8_1:33196409-33196428 None:intergenic 30.0%
AATGTCTTGAATAGGAGAAT+TGG - chr8_1:33196626-33196645 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG - chr8_1:33196634-33196653 None:intergenic 30.0%
TAGTGTGATTGGAATTGATT+TGG + chr8_1:33196826-33196845 Msa1190320:intron 30.0%
!! GAGTTTGATTTTGACATGTT+TGG - chr8_1:33197179-33197198 None:intergenic 30.0%
GATCAAGTTTAGTAACTCTT+CGG - chr8_1:33197594-33197613 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG + chr8_1:33197631-33197650 Msa1190320:intron 30.0%
AGGCTATTTGATTACATTCA+GGG + chr8_1:33197632-33197651 Msa1190320:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG - chr8_1:33197728-33197747 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG + chr8_1:33197857-33197876 Msa1190320:CDS 30.0%
CCTATTATCGTATTCAAAAG+GGG - chr8_1:33197996-33198015 None:intergenic 30.0%
CCCTATTATCGTATTCAAAA+GGG - chr8_1:33197997-33198016 None:intergenic 30.0%
! CCCTTTTGAATACGATAATA+GGG + chr8_1:33197994-33198013 Msa1190320:CDS 30.0%
ACCCTATTATCGTATTCAAA+AGG - chr8_1:33197998-33198017 None:intergenic 30.0%
ATAATAGGGTGAATGAGATA+TGG + chr8_1:33198008-33198027 Msa1190320:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG + chr8_1:33198024-33198043 Msa1190320:CDS 30.0%
! TACTATCTGGAATTTGTGAA+TGG - chr8_1:33198091-33198110 None:intergenic 30.0%
!! GTAATAAGTGTTTTGGATCT+TGG + chr8_1:33198276-33198295 Msa1190320:three_prime_UTR 30.0%
! TTCCACTTGGAAAGATTTTA+AGG - chr8_1:33198329-33198348 None:intergenic 30.0%
! ATCTTTCCAAGTGGAATTTT+AGG + chr8_1:33198333-33198352 Msa1190320:three_prime_UTR 30.0%
! TCTTTCCAAGTGGAATTTTA+GGG + chr8_1:33198334-33198353 Msa1190320:three_prime_UTR 30.0%
ATTGAATTGAATCGATGACA+AGG - chr8_1:33198431-33198450 None:intergenic 30.0%
GAATTAATTGATCATGCCTT+CGG - chr8_1:33198484-33198503 None:intergenic 30.0%
! GTTTTCGCCATCATTTATAT+GGG + chr8_1:33198523-33198542 Msa1190320:three_prime_UTR 30.0%
AAGAAATTTAAGAGTCAAGG+AGG - chr8_1:33198610-33198629 None:intergenic 30.0%
GAGAAGAAATTTAAGAGTCA+AGG - chr8_1:33198613-33198632 None:intergenic 30.0%
TGACTCTTAAATTTCTTCTC+AGG + chr8_1:33198613-33198632 Msa1190320:intron 30.0%
TCTCACAAAGATATGTTACA+AGG + chr8_1:33198867-33198886 Msa1190320:intron 30.0%
CAAATTAAGGAAAGCTGTAA+AGG + chr8_1:33198908-33198927 Msa1190320:intron 30.0%
TAACATTGCATGAGTATGTT+TGG - chr8_1:33199014-33199033 None:intergenic 30.0%
CAATCTAAATCGCAAGTTAA+AGG + chr8_1:33199083-33199102 Msa1190320:intron 30.0%
TACGATTGAATTCGACAATT+GGG - chr8_1:33199229-33199248 None:intergenic 30.0%
ATACGATTGAATTCGACAAT+TGG - chr8_1:33199230-33199249 None:intergenic 30.0%
!!! GCATTTTTTCTCAGTTTCAT+AGG + chr8_1:33199467-33199486 Msa1190320:intron 30.0%
GAAGACATCAAACAATTGTA+TGG + chr8_1:33199494-33199513 Msa1190320:intron 30.0%
!! AAACAAGATTGAAGCACTTT+TGG - chr8_1:33199543-33199562 Msa1190330:three_prime_UTR 30.0%
! AAAGTGCTTCAATCTTGTTT+CGG + chr8_1:33199543-33199562 Msa1190320:intron 30.0%
AATAAAACAAGAGAGGGAAA+GGG - chr8_1:33199838-33199857 Msa1190330:three_prime_UTR 30.0%
!!! TTTCCCTCTCTTGTTTTATT+CGG + chr8_1:33199838-33199857 Msa1190320:intron 30.0%
TAGTATTGCATGTGTATGTT+AGG - chr8_1:33199870-33199889 Msa1190330:three_prime_UTR 30.0%
! GATATTACAGTTTTTGCAGA+CGG + chr8_1:33199933-33199952 Msa1190320:intron 30.0%
AAGTAGTGACAATACTACTT+TGG + chr8_1:33200045-33200064 Msa1190320:three_prime_UTR 30.0%
!! TTCATTTTTCCCATTTGGAT+GGG - chr8_1:33200113-33200132 Msa1190330:CDS 30.0%
!! TTTCATTTTTCCCATTTGGA+TGG - chr8_1:33200114-33200133 Msa1190330:CDS 30.0%
!! CAAGTTTCATTTTTCCCATT+TGG - chr8_1:33200118-33200137 Msa1190330:CDS 30.0%
! AAATGAAACTTGACCTTTTG+TGG + chr8_1:33200126-33200145 Msa1190320:three_prime_UTR 30.0%
CAAAAGAGTTTAAACCAGAA+AGG - chr8_1:33200174-33200193 Msa1190330:CDS 30.0%
CACCTATGGAAAAAATGTTA+TGG + chr8_1:33200360-33200379 Msa1190320:three_prime_UTR 30.0%
GGAGTTTGTGAATTATGTTA+AGG - chr8_1:33196409-33196428 None:intergenic 30.0%
AATGTCTTGAATAGGAGAAT+TGG - chr8_1:33196626-33196645 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG - chr8_1:33196634-33196653 None:intergenic 30.0%
TAGTGTGATTGGAATTGATT+TGG + chr8_1:33196826-33196845 Msa1190320:intron 30.0%
!! GAGTTTGATTTTGACATGTT+TGG - chr8_1:33197179-33197198 None:intergenic 30.0%
GATCAAGTTTAGTAACTCTT+CGG - chr8_1:33197594-33197613 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG + chr8_1:33197631-33197650 Msa1190320:intron 30.0%
AGGCTATTTGATTACATTCA+GGG + chr8_1:33197632-33197651 Msa1190320:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG - chr8_1:33197728-33197747 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG + chr8_1:33197857-33197876 Msa1190320:CDS 30.0%
CCTATTATCGTATTCAAAAG+GGG - chr8_1:33197996-33198015 None:intergenic 30.0%
CCCTATTATCGTATTCAAAA+GGG - chr8_1:33197997-33198016 None:intergenic 30.0%
! CCCTTTTGAATACGATAATA+GGG + chr8_1:33197994-33198013 Msa1190320:CDS 30.0%
ACCCTATTATCGTATTCAAA+AGG - chr8_1:33197998-33198017 None:intergenic 30.0%
ATAATAGGGTGAATGAGATA+TGG + chr8_1:33198008-33198027 Msa1190320:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG + chr8_1:33198024-33198043 Msa1190320:CDS 30.0%
! TACTATCTGGAATTTGTGAA+TGG - chr8_1:33198091-33198110 None:intergenic 30.0%
!! GTAATAAGTGTTTTGGATCT+TGG + chr8_1:33198276-33198295 Msa1190320:three_prime_UTR 30.0%
! TTCCACTTGGAAAGATTTTA+AGG - chr8_1:33198329-33198348 None:intergenic 30.0%
! ATCTTTCCAAGTGGAATTTT+AGG + chr8_1:33198333-33198352 Msa1190320:three_prime_UTR 30.0%
! TCTTTCCAAGTGGAATTTTA+GGG + chr8_1:33198334-33198353 Msa1190320:three_prime_UTR 30.0%
ATTGAATTGAATCGATGACA+AGG - chr8_1:33198431-33198450 None:intergenic 30.0%
GAATTAATTGATCATGCCTT+CGG - chr8_1:33198484-33198503 None:intergenic 30.0%
! GTTTTCGCCATCATTTATAT+GGG + chr8_1:33198523-33198542 Msa1190320:three_prime_UTR 30.0%
AAGAAATTTAAGAGTCAAGG+AGG - chr8_1:33198610-33198629 None:intergenic 30.0%
GAGAAGAAATTTAAGAGTCA+AGG - chr8_1:33198613-33198632 None:intergenic 30.0%
TGACTCTTAAATTTCTTCTC+AGG + chr8_1:33198613-33198632 Msa1190320:intron 30.0%
TCTCACAAAGATATGTTACA+AGG + chr8_1:33198867-33198886 Msa1190320:intron 30.0%
CAAATTAAGGAAAGCTGTAA+AGG + chr8_1:33198908-33198927 Msa1190320:intron 30.0%
TAACATTGCATGAGTATGTT+TGG - chr8_1:33199014-33199033 None:intergenic 30.0%
CAATCTAAATCGCAAGTTAA+AGG + chr8_1:33199083-33199102 Msa1190320:intron 30.0%
TACGATTGAATTCGACAATT+GGG - chr8_1:33199229-33199248 None:intergenic 30.0%
ATACGATTGAATTCGACAAT+TGG - chr8_1:33199230-33199249 None:intergenic 30.0%
!!! GCATTTTTTCTCAGTTTCAT+AGG + chr8_1:33199467-33199486 Msa1190320:intron 30.0%
GAAGACATCAAACAATTGTA+TGG + chr8_1:33199494-33199513 Msa1190320:intron 30.0%
!! AAACAAGATTGAAGCACTTT+TGG - chr8_1:33199543-33199562 Msa1190330:three_prime_UTR 30.0%
! AAAGTGCTTCAATCTTGTTT+CGG + chr8_1:33199543-33199562 Msa1190320:intron 30.0%
AATAAAACAAGAGAGGGAAA+GGG - chr8_1:33199838-33199857 Msa1190330:three_prime_UTR 30.0%
!!! TTTCCCTCTCTTGTTTTATT+CGG + chr8_1:33199838-33199857 Msa1190320:intron 30.0%
TAGTATTGCATGTGTATGTT+AGG - chr8_1:33199870-33199889 Msa1190330:three_prime_UTR 30.0%
! GATATTACAGTTTTTGCAGA+CGG + chr8_1:33199933-33199952 Msa1190320:intron 30.0%
AAGTAGTGACAATACTACTT+TGG + chr8_1:33200045-33200064 Msa1190320:three_prime_UTR 30.0%
!! TTCATTTTTCCCATTTGGAT+GGG - chr8_1:33200113-33200132 Msa1190330:CDS 30.0%
!! TTTCATTTTTCCCATTTGGA+TGG - chr8_1:33200114-33200133 Msa1190330:CDS 30.0%
!! CAAGTTTCATTTTTCCCATT+TGG - chr8_1:33200118-33200137 Msa1190330:CDS 30.0%
! AAATGAAACTTGACCTTTTG+TGG + chr8_1:33200126-33200145 Msa1190320:three_prime_UTR 30.0%
CAAAAGAGTTTAAACCAGAA+AGG - chr8_1:33200174-33200193 Msa1190330:CDS 30.0%
CACCTATGGAAAAAATGTTA+TGG + chr8_1:33200360-33200379 Msa1190320:three_prime_UTR 30.0%
GCTTCTATGACATCATAGTT+GGG - chr8_1:33196556-33196575 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG - chr8_1:33196557-33196576 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG + chr8_1:33196556-33196575 Msa1190320:CDS 35.0%
GACGTTATAATTCGTCTGTT+TGG + chr8_1:33196596-33196615 Msa1190320:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG - chr8_1:33197494-33197513 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG - chr8_1:33197502-33197521 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG - chr8_1:33197589-33197608 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG - chr8_1:33197590-33197609 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG + chr8_1:33197633-33197652 Msa1190320:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG - chr8_1:33197670-33197689 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG + chr8_1:33197830-33197849 Msa1190320:CDS 35.0%
! CCCCTTTTGAATACGATAAT+AGG + chr8_1:33197993-33198012 Msa1190320:CDS 35.0%
!! TAAGTGTTTTGGATCTTGGA+AGG + chr8_1:33198280-33198299 Msa1190320:three_prime_UTR 35.0%
TGCCTTAAAATCTTTCCAAG+TGG + chr8_1:33198324-33198343 Msa1190320:three_prime_UTR 35.0%
ATGTTCCCTAAAATTCCACT+TGG - chr8_1:33198342-33198361 None:intergenic 35.0%
CAATATATTTGTCCAACCGA+AGG + chr8_1:33198465-33198484 Msa1190320:three_prime_UTR 35.0%
TTCTCAAATATTGATGTGGC+AGG + chr8_1:33198501-33198520 Msa1190320:three_prime_UTR 35.0%
! GGTTTTCGCCATCATTTATA+TGG + chr8_1:33198522-33198541 Msa1190320:three_prime_UTR 35.0%
GCAGAATCCCATATAAATGA+TGG - chr8_1:33198533-33198552 None:intergenic 35.0%
!! GGAAGCATGAATTGAACTTT+TGG - chr8_1:33198666-33198685 None:intergenic 35.0%
TATCGTGACAAGAAAAAGGA+TGG - chr8_1:33198687-33198706 None:intergenic 35.0%
CACGATAATTAGTTGTTGCA+CGG + chr8_1:33198700-33198719 Msa1190320:intron 35.0%
GACTATGCTCTCTAATTCTT+TGG - chr8_1:33198951-33198970 None:intergenic 35.0%
CAAAGACATCCATACAGAAA+AGG + chr8_1:33199402-33199421 Msa1190320:intron 35.0%
! ACAAGTTCTCCTTTTCTGTA+TGG - chr8_1:33199414-33199433 Msa1190330:three_prime_UTR 35.0%
! AAGTGCTTCAATCTTGTTTC+GGG + chr8_1:33199544-33199563 Msa1190320:intron 35.0%
TCTCAGAGAGTTAAGTTACA+AGG + chr8_1:33199684-33199703 Msa1190320:intron 35.0%
TTGATTAGTACTTGGTTGGT+TGG - chr8_1:33199803-33199822 Msa1190330:three_prime_UTR 35.0%
TTGGTTGATTAGTACTTGGT+TGG - chr8_1:33199807-33199826 Msa1190330:three_prime_UTR 35.0%
GCATTTGGTTGATTAGTACT+TGG - chr8_1:33199811-33199830 Msa1190330:three_prime_UTR 35.0%
GAATAAAACAAGAGAGGGAA+AGG - chr8_1:33199839-33199858 Msa1190330:three_prime_UTR 35.0%
AAGCCGAATAAAACAAGAGA+GGG - chr8_1:33199844-33199863 Msa1190330:three_prime_UTR 35.0%
! TACTACTTTGGCTTCCAATA+AGG + chr8_1:33200057-33200076 Msa1190320:three_prime_UTR 35.0%
! CTTCCAATAAGGCAAAGTTT+TGG + chr8_1:33200068-33200087 Msa1190320:three_prime_UTR 35.0%
!! TCATTTTTCCCATTTGGATG+GGG - chr8_1:33200112-33200131 Msa1190330:CDS 35.0%
TTTAAACCAGAAAGGTTCTC+TGG - chr8_1:33200166-33200185 Msa1190330:CDS 35.0%
TCACCATGACTGTGATATAT+GGG - chr8_1:33200206-33200225 Msa1190330:CDS 35.0%
TTCACCATGACTGTGATATA+TGG - chr8_1:33200207-33200226 Msa1190330:CDS 35.0%
! TCATGGTGAACCAAAAGTAT+CGG + chr8_1:33200217-33200236 Msa1190320:three_prime_UTR 35.0%
! TGTTTCCATACCGATACTTT+TGG - chr8_1:33200230-33200249 Msa1190330:CDS 35.0%
ATGGAAACATTTATTCCTGC+AGG + chr8_1:33200241-33200260 Msa1190320:three_prime_UTR 35.0%
TATAAAACCATGGTCACCTA+TGG + chr8_1:33200346-33200365 Msa1190320:three_prime_UTR 35.0%
!!! ATTTTTTCCATAGGTGACCA+TGG - chr8_1:33200356-33200375 Msa1190330:intron 35.0%
GCTTCTATGACATCATAGTT+GGG - chr8_1:33196556-33196575 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG - chr8_1:33196557-33196576 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG + chr8_1:33196556-33196575 Msa1190320:CDS 35.0%
GACGTTATAATTCGTCTGTT+TGG + chr8_1:33196596-33196615 Msa1190320:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG - chr8_1:33197494-33197513 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG - chr8_1:33197502-33197521 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG - chr8_1:33197589-33197608 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG - chr8_1:33197590-33197609 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG + chr8_1:33197633-33197652 Msa1190320:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG - chr8_1:33197670-33197689 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG + chr8_1:33197830-33197849 Msa1190320:CDS 35.0%
! CCCCTTTTGAATACGATAAT+AGG + chr8_1:33197993-33198012 Msa1190320:CDS 35.0%
!! TAAGTGTTTTGGATCTTGGA+AGG + chr8_1:33198280-33198299 Msa1190320:three_prime_UTR 35.0%
TGCCTTAAAATCTTTCCAAG+TGG + chr8_1:33198324-33198343 Msa1190320:three_prime_UTR 35.0%
ATGTTCCCTAAAATTCCACT+TGG - chr8_1:33198342-33198361 None:intergenic 35.0%
CAATATATTTGTCCAACCGA+AGG + chr8_1:33198465-33198484 Msa1190320:three_prime_UTR 35.0%
TTCTCAAATATTGATGTGGC+AGG + chr8_1:33198501-33198520 Msa1190320:three_prime_UTR 35.0%
! GGTTTTCGCCATCATTTATA+TGG + chr8_1:33198522-33198541 Msa1190320:three_prime_UTR 35.0%
GCAGAATCCCATATAAATGA+TGG - chr8_1:33198533-33198552 None:intergenic 35.0%
!! GGAAGCATGAATTGAACTTT+TGG - chr8_1:33198666-33198685 None:intergenic 35.0%
TATCGTGACAAGAAAAAGGA+TGG - chr8_1:33198687-33198706 None:intergenic 35.0%
CACGATAATTAGTTGTTGCA+CGG + chr8_1:33198700-33198719 Msa1190320:intron 35.0%
GACTATGCTCTCTAATTCTT+TGG - chr8_1:33198951-33198970 None:intergenic 35.0%
CAAAGACATCCATACAGAAA+AGG + chr8_1:33199402-33199421 Msa1190320:intron 35.0%
! ACAAGTTCTCCTTTTCTGTA+TGG - chr8_1:33199414-33199433 Msa1190330:three_prime_UTR 35.0%
! AAGTGCTTCAATCTTGTTTC+GGG + chr8_1:33199544-33199563 Msa1190320:intron 35.0%
TCTCAGAGAGTTAAGTTACA+AGG + chr8_1:33199684-33199703 Msa1190320:intron 35.0%
TTGATTAGTACTTGGTTGGT+TGG - chr8_1:33199803-33199822 Msa1190330:three_prime_UTR 35.0%
TTGGTTGATTAGTACTTGGT+TGG - chr8_1:33199807-33199826 Msa1190330:three_prime_UTR 35.0%
GCATTTGGTTGATTAGTACT+TGG - chr8_1:33199811-33199830 Msa1190330:three_prime_UTR 35.0%
GAATAAAACAAGAGAGGGAA+AGG - chr8_1:33199839-33199858 Msa1190330:three_prime_UTR 35.0%
AAGCCGAATAAAACAAGAGA+GGG - chr8_1:33199844-33199863 Msa1190330:three_prime_UTR 35.0%
! TACTACTTTGGCTTCCAATA+AGG + chr8_1:33200057-33200076 Msa1190320:three_prime_UTR 35.0%
! CTTCCAATAAGGCAAAGTTT+TGG + chr8_1:33200068-33200087 Msa1190320:three_prime_UTR 35.0%
!! TCATTTTTCCCATTTGGATG+GGG - chr8_1:33200112-33200131 Msa1190330:CDS 35.0%
TTTAAACCAGAAAGGTTCTC+TGG - chr8_1:33200166-33200185 Msa1190330:CDS 35.0%
TCACCATGACTGTGATATAT+GGG - chr8_1:33200206-33200225 Msa1190330:CDS 35.0%
TTCACCATGACTGTGATATA+TGG - chr8_1:33200207-33200226 Msa1190330:CDS 35.0%
! TCATGGTGAACCAAAAGTAT+CGG + chr8_1:33200217-33200236 Msa1190320:three_prime_UTR 35.0%
! TGTTTCCATACCGATACTTT+TGG - chr8_1:33200230-33200249 Msa1190330:CDS 35.0%
ATGGAAACATTTATTCCTGC+AGG + chr8_1:33200241-33200260 Msa1190320:three_prime_UTR 35.0%
TATAAAACCATGGTCACCTA+TGG + chr8_1:33200346-33200365 Msa1190320:three_prime_UTR 35.0%
!!! ATTTTTTCCATAGGTGACCA+TGG - chr8_1:33200356-33200375 Msa1190330:intron 35.0%
GATGTCATAGAAGCTGGAAA+TGG + chr8_1:33196562-33196581 Msa1190320:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG + chr8_1:33196649-33196668 Msa1190320:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG + chr8_1:33196656-33196675 Msa1190320:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG + chr8_1:33196815-33196834 Msa1190320:intron 40.0%
GGGAGTTGAAAAATCATGTC+TGG + chr8_1:33196920-33196939 Msa1190320:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG + chr8_1:33197038-33197057 Msa1190320:intron 40.0%
!! TAATTACAAGTGTCGGTGTC+GGG + chr8_1:33197039-33197058 Msa1190320:intron 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG + chr8_1:33197558-33197577 Msa1190320:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG + chr8_1:33197701-33197720 Msa1190320:CDS 40.0%
TCACAAAATGGTCCATCACT+TGG - chr8_1:33197716-33197735 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG - chr8_1:33197767-33197786 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG + chr8_1:33197798-33197817 Msa1190320:CDS 40.0%
ATTGAACAAAGCCATAGAGC+TGG + chr8_1:33197935-33197954 Msa1190320:CDS 40.0%
TAATTGATCATGCCTTCGGT+TGG - chr8_1:33198480-33198499 None:intergenic 40.0%
AATTAGTTGTTGCACGGTCA+TGG + chr8_1:33198706-33198725 Msa1190320:intron 40.0%
AATTCTCGTGGACACAAACA+CGG - chr8_1:33199135-33199154 None:intergenic 40.0%
TGTTTGTGTCCACGAGAATT+TGG + chr8_1:33199135-33199154 Msa1190320:intron 40.0%
! TGATCAGCTGTTAGTTTCTC+TGG - chr8_1:33199325-33199344 Msa1190330:three_prime_UTR 40.0%
TAGAAAGATGCTCTCTGCTA+GGG - chr8_1:33199376-33199395 Msa1190330:three_prime_UTR 40.0%
!! TAGCAGAGAGCATCTTTCTA+GGG + chr8_1:33199376-33199395 Msa1190320:intron 40.0%
TGCATCTGATACCAGCTTAT+TGG + chr8_1:33199597-33199616 Msa1190320:intron 40.0%
TCTGATACCAGCTTATTGGT+TGG + chr8_1:33199601-33199620 Msa1190320:intron 40.0%
CAAGCCGAATAAAACAAGAG+AGG - chr8_1:33199845-33199864 Msa1190330:three_prime_UTR 40.0%
TTTCTTTGCAGCCAAAACAC+GGG - chr8_1:33199967-33199986 Msa1190330:CDS 40.0%
CTTTCTTTGCAGCCAAAACA+CGG - chr8_1:33199968-33199987 Msa1190330:CDS 40.0%
TGCAAAGAAAGGATAGCAGT+GGG + chr8_1:33199977-33199996 Msa1190320:three_prime_UTR 40.0%
CATGCTTATAGTCTGCAGAA+AGG + chr8_1:33200002-33200021 Msa1190320:three_prime_UTR 40.0%
TGGCCAAAACTTTGCCTTAT+TGG - chr8_1:33200074-33200093 Msa1190330:CDS 40.0%
! TTTTGGCCAATGCATGTTCT+AGG + chr8_1:33200085-33200104 Msa1190320:three_prime_UTR 40.0%
CACCATGACTGTGATATATG+GGG - chr8_1:33200205-33200224 Msa1190330:CDS 40.0%
!! GTGAACCAAAAGTATCGGTA+TGG + chr8_1:33200222-33200241 Msa1190320:three_prime_UTR 40.0%
TTATTCCTGCAGGTAGTGAT+AGG + chr8_1:33200251-33200270 Msa1190320:three_prime_UTR 40.0%
GCTCGAACTAAGAAAACTGT+TGG + chr8_1:33200301-33200320 Msa1190320:three_prime_UTR 40.0%
CGAACTAAGAAAACTGTTGG+TGG + chr8_1:33200304-33200323 Msa1190320:three_prime_UTR 40.0%
! CTGTTGGTGGATATAATCTC+AGG + chr8_1:33200317-33200336 Msa1190320:three_prime_UTR 40.0%
CAGGACCTCATATAAAACCA+TGG + chr8_1:33200336-33200355 Msa1190320:three_prime_UTR 40.0%
!!! GGTGACCATGGTTTTATATG+AGG - chr8_1:33200344-33200363 Msa1190330:intron 40.0%
GATGTCATAGAAGCTGGAAA+TGG + chr8_1:33196562-33196581 Msa1190320:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG + chr8_1:33196649-33196668 Msa1190320:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG + chr8_1:33196656-33196675 Msa1190320:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG + chr8_1:33196815-33196834 Msa1190320:intron 40.0%
GGGAGTTGAAAAATCATGTC+TGG + chr8_1:33196920-33196939 Msa1190320:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG + chr8_1:33197038-33197057 Msa1190320:intron 40.0%
!! TAATTACAAGTGTCGGTGTC+GGG + chr8_1:33197039-33197058 Msa1190320:intron 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG + chr8_1:33197558-33197577 Msa1190320:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG + chr8_1:33197701-33197720 Msa1190320:CDS 40.0%
TCACAAAATGGTCCATCACT+TGG - chr8_1:33197716-33197735 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG - chr8_1:33197767-33197786 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG + chr8_1:33197798-33197817 Msa1190320:CDS 40.0%
ATTGAACAAAGCCATAGAGC+TGG + chr8_1:33197935-33197954 Msa1190320:CDS 40.0%
TAATTGATCATGCCTTCGGT+TGG - chr8_1:33198480-33198499 None:intergenic 40.0%
AATTAGTTGTTGCACGGTCA+TGG + chr8_1:33198706-33198725 Msa1190320:intron 40.0%
AATTCTCGTGGACACAAACA+CGG - chr8_1:33199135-33199154 None:intergenic 40.0%
TGTTTGTGTCCACGAGAATT+TGG + chr8_1:33199135-33199154 Msa1190320:intron 40.0%
! TGATCAGCTGTTAGTTTCTC+TGG - chr8_1:33199325-33199344 Msa1190330:three_prime_UTR 40.0%
TAGAAAGATGCTCTCTGCTA+GGG - chr8_1:33199376-33199395 Msa1190330:three_prime_UTR 40.0%
!! TAGCAGAGAGCATCTTTCTA+GGG + chr8_1:33199376-33199395 Msa1190320:intron 40.0%
TGCATCTGATACCAGCTTAT+TGG + chr8_1:33199597-33199616 Msa1190320:intron 40.0%
TCTGATACCAGCTTATTGGT+TGG + chr8_1:33199601-33199620 Msa1190320:intron 40.0%
CAAGCCGAATAAAACAAGAG+AGG - chr8_1:33199845-33199864 Msa1190330:three_prime_UTR 40.0%
TTTCTTTGCAGCCAAAACAC+GGG - chr8_1:33199967-33199986 Msa1190330:CDS 40.0%
CTTTCTTTGCAGCCAAAACA+CGG - chr8_1:33199968-33199987 Msa1190330:CDS 40.0%
TGCAAAGAAAGGATAGCAGT+GGG + chr8_1:33199977-33199996 Msa1190320:three_prime_UTR 40.0%
CATGCTTATAGTCTGCAGAA+AGG + chr8_1:33200002-33200021 Msa1190320:three_prime_UTR 40.0%
TGGCCAAAACTTTGCCTTAT+TGG - chr8_1:33200074-33200093 Msa1190330:CDS 40.0%
! TTTTGGCCAATGCATGTTCT+AGG + chr8_1:33200085-33200104 Msa1190320:three_prime_UTR 40.0%
CACCATGACTGTGATATATG+GGG - chr8_1:33200205-33200224 Msa1190330:CDS 40.0%
!! GTGAACCAAAAGTATCGGTA+TGG + chr8_1:33200222-33200241 Msa1190320:three_prime_UTR 40.0%
TTATTCCTGCAGGTAGTGAT+AGG + chr8_1:33200251-33200270 Msa1190320:three_prime_UTR 40.0%
GCTCGAACTAAGAAAACTGT+TGG + chr8_1:33200301-33200320 Msa1190320:three_prime_UTR 40.0%
CGAACTAAGAAAACTGTTGG+TGG + chr8_1:33200304-33200323 Msa1190320:three_prime_UTR 40.0%
! CTGTTGGTGGATATAATCTC+AGG + chr8_1:33200317-33200336 Msa1190320:three_prime_UTR 40.0%
CAGGACCTCATATAAAACCA+TGG + chr8_1:33200336-33200355 Msa1190320:three_prime_UTR 40.0%
!!! GGTGACCATGGTTTTATATG+AGG - chr8_1:33200344-33200363 Msa1190330:intron 40.0%
AACTCCAAGCATGCAATCCA+TGG + chr8_1:33196423-33196442 Msa1190320:exon 45.0%
! CTACTAGAACTGGTTTCAGG+AGG + chr8_1:33196659-33196678 Msa1190320:CDS 45.0%
! ATGTCTGGAGCTATGAAGCA+CGG + chr8_1:33196935-33196954 Msa1190320:intron 45.0%
ACTCTTCCCACTGTTTACGT+TGG + chr8_1:33197195-33197214 Msa1190320:intron 45.0%
CTCTTCCCACTGTTTACGTT+GGG + chr8_1:33197196-33197215 Msa1190320:intron 45.0%
CACTTCCCAACGTAAACAGT+GGG - chr8_1:33197204-33197223 None:intergenic 45.0%
ACACTTCCCAACGTAAACAG+TGG - chr8_1:33197205-33197224 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG - chr8_1:33197695-33197714 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG - chr8_1:33197794-33197813 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG + chr8_1:33197833-33197852 Msa1190320:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG + chr8_1:33197903-33197922 Msa1190320:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG - chr8_1:33197915-33197934 None:intergenic 45.0%
TCACACTTGGTACCATTGGT+GGG - chr8_1:33198369-33198388 None:intergenic 45.0%
! CGATGACAAGGAGAAAGTGT+AGG - chr8_1:33198419-33198438 None:intergenic 45.0%
TATGGGATTCTGCTTTGTCG+CGG + chr8_1:33198540-33198559 Msa1190320:three_prime_UTR 45.0%
!!! CTTTTGGAACGAGCGTATGA+AGG - chr8_1:33198650-33198669 None:intergenic 45.0%
ACAAACACGGCACTTTAGCA+GGG - chr8_1:33199122-33199141 None:intergenic 45.0%
GTCCACGAGAATTTGGAAGT+AGG + chr8_1:33199142-33199161 Msa1190320:intron 45.0%
CACCTACTTCCAAATTCTCG+TGG - chr8_1:33199147-33199166 None:intergenic 45.0%
CCACCGAAACAGTGTAAACA+CGG + chr8_1:33199192-33199211 Msa1190320:intron 45.0%
CAGCCGTGTTTACACTGTTT+CGG - chr8_1:33199198-33199217 None:intergenic 45.0%
AGGTCACTATCACAGAGATG+AGG + chr8_1:33199262-33199281 Msa1190320:intron 45.0%
ACTATCACAGAGATGAGGTG+AGG + chr8_1:33199267-33199286 Msa1190320:intron 45.0%
AAACTAACAGCTGATCAGCC+AGG + chr8_1:33199328-33199347 Msa1190320:intron 45.0%
CTAGAAAGATGCTCTCTGCT+AGG - chr8_1:33199377-33199396 Msa1190330:three_prime_UTR 45.0%
!! CTAGCAGAGAGCATCTTTCT+AGG + chr8_1:33199375-33199394 Msa1190320:intron 45.0%
!! AGCAGAGAGCATCTTTCTAG+GGG + chr8_1:33199377-33199396 Msa1190320:intron 45.0%
GCAAATGCCAACCAATAAGC+TGG - chr8_1:33199611-33199630 Msa1190330:three_prime_UTR 45.0%
! TTGGTTGGTTGGTCAAGACT+AGG - chr8_1:33199792-33199811 Msa1190330:three_prime_UTR 45.0%
AACAAGAGAGGGAAAGGGAT+TGG - chr8_1:33199833-33199852 Msa1190330:three_prime_UTR 45.0%
TTCTTTGCAGCCAAAACACG+GGG - chr8_1:33199966-33199985 Msa1190330:CDS 45.0%
!!! CGTGTTTTGGCTGCAAAGAA+AGG + chr8_1:33199966-33199985 Msa1190320:three_prime_UTR 45.0%
CTGCAAAGAAAGGATAGCAG+TGG + chr8_1:33199976-33199995 Msa1190320:three_prime_UTR 45.0%
!! TTCTAGGACCCCATCCAAAT+GGG + chr8_1:33200101-33200120 Msa1190320:three_prime_UTR 45.0%
GGAATTGCAAAGGCCACAAA+AGG - chr8_1:33200142-33200161 Msa1190330:CDS 45.0%
! GTTCTCTGGAGGAATTGCAA+AGG - chr8_1:33200152-33200171 Msa1190330:CDS 45.0%
ATTCCTCCAGAGAACCTTTC+TGG + chr8_1:33200157-33200176 Msa1190320:three_prime_UTR 45.0%
AAACCAGAAAGGTTCTCTGG+AGG - chr8_1:33200163-33200182 Msa1190330:CDS 45.0%
CACCCCATATATCACAGTCA+TGG + chr8_1:33200200-33200219 Msa1190320:three_prime_UTR 45.0%
AACTCCAAGCATGCAATCCA+TGG + chr8_1:33196423-33196442 Msa1190320:exon 45.0%
! CTACTAGAACTGGTTTCAGG+AGG + chr8_1:33196659-33196678 Msa1190320:CDS 45.0%
! ATGTCTGGAGCTATGAAGCA+CGG + chr8_1:33196935-33196954 Msa1190320:intron 45.0%
ACTCTTCCCACTGTTTACGT+TGG + chr8_1:33197195-33197214 Msa1190320:intron 45.0%
CTCTTCCCACTGTTTACGTT+GGG + chr8_1:33197196-33197215 Msa1190320:intron 45.0%
CACTTCCCAACGTAAACAGT+GGG - chr8_1:33197204-33197223 None:intergenic 45.0%
ACACTTCCCAACGTAAACAG+TGG - chr8_1:33197205-33197224 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG - chr8_1:33197695-33197714 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG - chr8_1:33197794-33197813 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG + chr8_1:33197833-33197852 Msa1190320:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG + chr8_1:33197903-33197922 Msa1190320:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG - chr8_1:33197915-33197934 None:intergenic 45.0%
TCACACTTGGTACCATTGGT+GGG - chr8_1:33198369-33198388 None:intergenic 45.0%
! CGATGACAAGGAGAAAGTGT+AGG - chr8_1:33198419-33198438 None:intergenic 45.0%
TATGGGATTCTGCTTTGTCG+CGG + chr8_1:33198540-33198559 Msa1190320:three_prime_UTR 45.0%
!!! CTTTTGGAACGAGCGTATGA+AGG - chr8_1:33198650-33198669 None:intergenic 45.0%
ACAAACACGGCACTTTAGCA+GGG - chr8_1:33199122-33199141 None:intergenic 45.0%
GTCCACGAGAATTTGGAAGT+AGG + chr8_1:33199142-33199161 Msa1190320:intron 45.0%
CACCTACTTCCAAATTCTCG+TGG - chr8_1:33199147-33199166 None:intergenic 45.0%
CCACCGAAACAGTGTAAACA+CGG + chr8_1:33199192-33199211 Msa1190320:intron 45.0%
CAGCCGTGTTTACACTGTTT+CGG - chr8_1:33199198-33199217 None:intergenic 45.0%
AGGTCACTATCACAGAGATG+AGG + chr8_1:33199262-33199281 Msa1190320:intron 45.0%
ACTATCACAGAGATGAGGTG+AGG + chr8_1:33199267-33199286 Msa1190320:intron 45.0%
AAACTAACAGCTGATCAGCC+AGG + chr8_1:33199328-33199347 Msa1190320:intron 45.0%
CTAGAAAGATGCTCTCTGCT+AGG - chr8_1:33199377-33199396 Msa1190330:three_prime_UTR 45.0%
!! CTAGCAGAGAGCATCTTTCT+AGG + chr8_1:33199375-33199394 Msa1190320:intron 45.0%
!! AGCAGAGAGCATCTTTCTAG+GGG + chr8_1:33199377-33199396 Msa1190320:intron 45.0%
GCAAATGCCAACCAATAAGC+TGG - chr8_1:33199611-33199630 Msa1190330:three_prime_UTR 45.0%
! TTGGTTGGTTGGTCAAGACT+AGG - chr8_1:33199792-33199811 Msa1190330:three_prime_UTR 45.0%
AACAAGAGAGGGAAAGGGAT+TGG - chr8_1:33199833-33199852 Msa1190330:three_prime_UTR 45.0%
TTCTTTGCAGCCAAAACACG+GGG - chr8_1:33199966-33199985 Msa1190330:CDS 45.0%
!!! CGTGTTTTGGCTGCAAAGAA+AGG + chr8_1:33199966-33199985 Msa1190320:three_prime_UTR 45.0%
CTGCAAAGAAAGGATAGCAG+TGG + chr8_1:33199976-33199995 Msa1190320:three_prime_UTR 45.0%
!! TTCTAGGACCCCATCCAAAT+GGG + chr8_1:33200101-33200120 Msa1190320:three_prime_UTR 45.0%
GGAATTGCAAAGGCCACAAA+AGG - chr8_1:33200142-33200161 Msa1190330:CDS 45.0%
! GTTCTCTGGAGGAATTGCAA+AGG - chr8_1:33200152-33200171 Msa1190330:CDS 45.0%
ATTCCTCCAGAGAACCTTTC+TGG + chr8_1:33200157-33200176 Msa1190320:three_prime_UTR 45.0%
AAACCAGAAAGGTTCTCTGG+AGG - chr8_1:33200163-33200182 Msa1190330:CDS 45.0%
CACCCCATATATCACAGTCA+TGG + chr8_1:33200200-33200219 Msa1190320:three_prime_UTR 45.0%
!! AAAAAAAAATTATTTATCAT+TGG - chr8_1:33198743-33198762 None:intergenic 5.0%
!!! GATAAATAATTTTTTTTTTT+AGG + chr8_1:33198745-33198764 Msa1190320:intron 5.0%
!! AAAAAAAAATTATTTATCAT+TGG - chr8_1:33198743-33198762 None:intergenic 5.0%
!!! GATAAATAATTTTTTTTTTT+AGG + chr8_1:33198745-33198764 Msa1190320:intron 5.0%
! ACAGCCATGGATTGCATGCT+TGG - chr8_1:33196430-33196449 None:intergenic 50.0%
TGTTGTGGTGGTTACAGCCA+TGG - chr8_1:33196443-33196462 None:intergenic 50.0%
TGGCTGTAACCACCACAACA+TGG + chr8_1:33196443-33196462 Msa1190320:CDS 50.0%
TGAGAGCTTCCATGTTGTGG+TGG - chr8_1:33196455-33196474 None:intergenic 50.0%
CAGTGAGAGCTTCCATGTTG+TGG - chr8_1:33196458-33196477 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG - chr8_1:33196535-33196554 None:intergenic 50.0%
GTCGGGATACGTCTAATTCG+AGG + chr8_1:33197056-33197075 Msa1190320:intron 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG + chr8_1:33197075-33197094 Msa1190320:intron 50.0%
GTGTCTGTGCTTCATAGGTC+TGG + chr8_1:33197080-33197099 Msa1190320:intron 50.0%
TCTGTGCTTCATAGGTCTGG+AGG + chr8_1:33197083-33197102 Msa1190320:intron 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG - chr8_1:33197491-33197510 None:intergenic 50.0%
!! TTGCAGGTGGTGGATTTGCT+TGG - chr8_1:33197778-33197797 None:intergenic 50.0%
AGCAAATCCACCACCTGCAA+AGG + chr8_1:33197778-33197797 Msa1190320:CDS 50.0%
GCAAATCCACCACCTGCAAA+GGG + chr8_1:33197779-33197798 Msa1190320:CDS 50.0%
ACATGAAGACCCTTTGCAGG+TGG - chr8_1:33197791-33197810 None:intergenic 50.0%
! TGAGCTAGCATCAGCGTTGA+AGG + chr8_1:33197880-33197899 Msa1190320:CDS 50.0%
GCGTTGAAGGACAGTATTGC+CGG + chr8_1:33197893-33197912 Msa1190320:CDS 50.0%
CTGAAGCATGACCAGCTCTA+TGG - chr8_1:33197949-33197968 None:intergenic 50.0%
CTCACACTTGGTACCATTGG+TGG - chr8_1:33198370-33198389 None:intergenic 50.0%
AGGCTCACACTTGGTACCAT+TGG - chr8_1:33198373-33198392 None:intergenic 50.0%
TGGAAGGAAAGGCTCACACT+TGG - chr8_1:33198382-33198401 None:intergenic 50.0%
CCATGGTTGCTTGGAAGGAA+AGG - chr8_1:33198393-33198412 None:intergenic 50.0%
CCTTTCCTTCCAAGCAACCA+TGG + chr8_1:33198390-33198409 Msa1190320:three_prime_UTR 50.0%
TGTAGGTTGCCATGGTTGCT+TGG - chr8_1:33198402-33198421 None:intergenic 50.0%
! GGAGAAAGTGTAGGTTGCCA+TGG - chr8_1:33198410-33198429 None:intergenic 50.0%
! ACTTTAGCAGGGTTCTGGCA+GGG - chr8_1:33199111-33199130 None:intergenic 50.0%
CACAAACACGGCACTTTAGC+AGG - chr8_1:33199123-33199142 None:intergenic 50.0%
!! CTGTTTCGGTGGTGTTACGA+AGG - chr8_1:33199184-33199203 None:intergenic 50.0%
CCGTGTTTACACTGTTTCGG+TGG - chr8_1:33199195-33199214 None:intergenic 50.0%
ATCACAGAGATGAGGTGAGG+AGG + chr8_1:33199270-33199289 Msa1190320:intron 50.0%
GAGGAGGAGCTAAAAACCTG+AGG + chr8_1:33199286-33199305 Msa1190320:intron 50.0%
GAGGAGCTAAAAACCTGAGG+AGG + chr8_1:33199289-33199308 Msa1190320:intron 50.0%
TGATCAGCCAGGAAACCCTA+GGG + chr8_1:33199339-33199358 Msa1190320:intron 50.0%
! GAGGGAAAGGGATTGGCATT+TGG - chr8_1:33199826-33199845 Msa1190330:three_prime_UTR 50.0%
TGGGGTCCTAGAACATGCAT+TGG - chr8_1:33200094-33200113 Msa1190330:CDS 50.0%
!! GTTCTAGGACCCCATCCAAA+TGG + chr8_1:33200100-33200119 Msa1190320:three_prime_UTR 50.0%
GGAAACCTATCACTACCTGC+AGG - chr8_1:33200259-33200278 Msa1190330:CDS 50.0%
! ACAGCCATGGATTGCATGCT+TGG - chr8_1:33196430-33196449 None:intergenic 50.0%
TGTTGTGGTGGTTACAGCCA+TGG - chr8_1:33196443-33196462 None:intergenic 50.0%
TGGCTGTAACCACCACAACA+TGG + chr8_1:33196443-33196462 Msa1190320:CDS 50.0%
TGAGAGCTTCCATGTTGTGG+TGG - chr8_1:33196455-33196474 None:intergenic 50.0%
CAGTGAGAGCTTCCATGTTG+TGG - chr8_1:33196458-33196477 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG - chr8_1:33196535-33196554 None:intergenic 50.0%
GTCGGGATACGTCTAATTCG+AGG + chr8_1:33197056-33197075 Msa1190320:intron 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG + chr8_1:33197075-33197094 Msa1190320:intron 50.0%
GTGTCTGTGCTTCATAGGTC+TGG + chr8_1:33197080-33197099 Msa1190320:intron 50.0%
TCTGTGCTTCATAGGTCTGG+AGG + chr8_1:33197083-33197102 Msa1190320:intron 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG - chr8_1:33197491-33197510 None:intergenic 50.0%
!! TTGCAGGTGGTGGATTTGCT+TGG - chr8_1:33197778-33197797 None:intergenic 50.0%
AGCAAATCCACCACCTGCAA+AGG + chr8_1:33197778-33197797 Msa1190320:CDS 50.0%
GCAAATCCACCACCTGCAAA+GGG + chr8_1:33197779-33197798 Msa1190320:CDS 50.0%
ACATGAAGACCCTTTGCAGG+TGG - chr8_1:33197791-33197810 None:intergenic 50.0%
! TGAGCTAGCATCAGCGTTGA+AGG + chr8_1:33197880-33197899 Msa1190320:CDS 50.0%
GCGTTGAAGGACAGTATTGC+CGG + chr8_1:33197893-33197912 Msa1190320:CDS 50.0%
CTGAAGCATGACCAGCTCTA+TGG - chr8_1:33197949-33197968 None:intergenic 50.0%
CTCACACTTGGTACCATTGG+TGG - chr8_1:33198370-33198389 None:intergenic 50.0%
AGGCTCACACTTGGTACCAT+TGG - chr8_1:33198373-33198392 None:intergenic 50.0%
TGGAAGGAAAGGCTCACACT+TGG - chr8_1:33198382-33198401 None:intergenic 50.0%
CCATGGTTGCTTGGAAGGAA+AGG - chr8_1:33198393-33198412 None:intergenic 50.0%
CCTTTCCTTCCAAGCAACCA+TGG + chr8_1:33198390-33198409 Msa1190320:three_prime_UTR 50.0%
TGTAGGTTGCCATGGTTGCT+TGG - chr8_1:33198402-33198421 None:intergenic 50.0%
! GGAGAAAGTGTAGGTTGCCA+TGG - chr8_1:33198410-33198429 None:intergenic 50.0%
! ACTTTAGCAGGGTTCTGGCA+GGG - chr8_1:33199111-33199130 None:intergenic 50.0%
CACAAACACGGCACTTTAGC+AGG - chr8_1:33199123-33199142 None:intergenic 50.0%
!! CTGTTTCGGTGGTGTTACGA+AGG - chr8_1:33199184-33199203 None:intergenic 50.0%
CCGTGTTTACACTGTTTCGG+TGG - chr8_1:33199195-33199214 None:intergenic 50.0%
ATCACAGAGATGAGGTGAGG+AGG + chr8_1:33199270-33199289 Msa1190320:intron 50.0%
GAGGAGGAGCTAAAAACCTG+AGG + chr8_1:33199286-33199305 Msa1190320:intron 50.0%
GAGGAGCTAAAAACCTGAGG+AGG + chr8_1:33199289-33199308 Msa1190320:intron 50.0%
TGATCAGCCAGGAAACCCTA+GGG + chr8_1:33199339-33199358 Msa1190320:intron 50.0%
! GAGGGAAAGGGATTGGCATT+TGG - chr8_1:33199826-33199845 Msa1190330:three_prime_UTR 50.0%
TGGGGTCCTAGAACATGCAT+TGG - chr8_1:33200094-33200113 Msa1190330:CDS 50.0%
!! GTTCTAGGACCCCATCCAAA+TGG + chr8_1:33200100-33200119 Msa1190320:three_prime_UTR 50.0%
GGAAACCTATCACTACCTGC+AGG - chr8_1:33200259-33200278 Msa1190330:CDS 50.0%
GGAGCTATGAAGCACGGATG+CGG + chr8_1:33196941-33196960 Msa1190320:intron 55.0%
CTATGAAGCACGGATGCGGA+CGG + chr8_1:33196945-33196964 Msa1190320:intron 55.0%
TGAAGACCCTTTGCAGGTGG+TGG - chr8_1:33197788-33197807 None:intergenic 55.0%
GGGAACATCAGTCCCACCAA+TGG + chr8_1:33198354-33198373 Msa1190320:three_prime_UTR 55.0%
GGTTGCCATGGTTGCTTGGA+AGG - chr8_1:33198398-33198417 None:intergenic 55.0%
! CACTTTAGCAGGGTTCTGGC+AGG - chr8_1:33199112-33199131 None:intergenic 55.0%
ACGGCACTTTAGCAGGGTTC+TGG - chr8_1:33199116-33199135 None:intergenic 55.0%
CTGATCAGCCAGGAAACCCT+AGG + chr8_1:33199338-33199357 Msa1190320:intron 55.0%
GATCAGCCAGGAAACCCTAG+GGG + chr8_1:33199340-33199359 Msa1190320:intron 55.0%
! CGGATCTTAGCCCCGTGTTT+TGG + chr8_1:33199953-33199972 Msa1190320:three_prime_UTR 55.0%
GGAGCTATGAAGCACGGATG+CGG + chr8_1:33196941-33196960 Msa1190320:intron 55.0%
CTATGAAGCACGGATGCGGA+CGG + chr8_1:33196945-33196964 Msa1190320:intron 55.0%
TGAAGACCCTTTGCAGGTGG+TGG - chr8_1:33197788-33197807 None:intergenic 55.0%
GGGAACATCAGTCCCACCAA+TGG + chr8_1:33198354-33198373 Msa1190320:three_prime_UTR 55.0%
GGTTGCCATGGTTGCTTGGA+AGG - chr8_1:33198398-33198417 None:intergenic 55.0%
! CACTTTAGCAGGGTTCTGGC+AGG - chr8_1:33199112-33199131 None:intergenic 55.0%
ACGGCACTTTAGCAGGGTTC+TGG - chr8_1:33199116-33199135 None:intergenic 55.0%
CTGATCAGCCAGGAAACCCT+AGG + chr8_1:33199338-33199357 Msa1190320:intron 55.0%
GATCAGCCAGGAAACCCTAG+GGG + chr8_1:33199340-33199359 Msa1190320:intron 55.0%
! CGGATCTTAGCCCCGTGTTT+TGG + chr8_1:33199953-33199972 Msa1190320:three_prime_UTR 55.0%
GTCAGTGTCCGTGTCGTGTC+CGG - chr8_1:33196974-33196993 None:intergenic 60.0%
AGCCAGGAAACCCTAGGGGA+AGG + chr8_1:33199344-33199363 Msa1190320:intron 60.0%
GCCAGGAAACCCTAGGGGAA+GGG + chr8_1:33199345-33199364 Msa1190320:intron 60.0%
AGGGTTTCGCCCTTCCCCTA+GGG - chr8_1:33199357-33199376 Msa1190330:three_prime_UTR 60.0%
TAGGGTTTCGCCCTTCCCCT+AGG - chr8_1:33199358-33199377 Msa1190330:three_prime_UTR 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG - chr8_1:33196974-33196993 None:intergenic 60.0%
AGCCAGGAAACCCTAGGGGA+AGG + chr8_1:33199344-33199363 Msa1190320:intron 60.0%
GCCAGGAAACCCTAGGGGAA+GGG + chr8_1:33199345-33199364 Msa1190320:intron 60.0%
AGGGTTTCGCCCTTCCCCTA+GGG - chr8_1:33199357-33199376 Msa1190330:three_prime_UTR 60.0%
TAGGGTTTCGCCCTTCCCCT+AGG - chr8_1:33199358-33199377 Msa1190330:three_prime_UTR 60.0%
GACGGACACCGGACACGACA+CGG + chr8_1:33196963-33196982 Msa1190320:intron 65.0%
TGGTACGCTCGCTCCTCCTC+AGG - chr8_1:33199305-33199324 Msa1190330:intron 65.0%
GCCCTTCCCCTAGGGTTTCC+TGG - chr8_1:33199349-33199368 Msa1190330:three_prime_UTR 65.0%
GACGGACACCGGACACGACA+CGG + chr8_1:33196963-33196982 Msa1190320:intron 65.0%
TGGTACGCTCGCTCCTCCTC+AGG - chr8_1:33199305-33199324 Msa1190330:intron 65.0%
GCCCTTCCCCTAGGGTTTCC+TGG - chr8_1:33199349-33199368 Msa1190330:three_prime_UTR 65.0%
GCACGGATGCGGACGGACAC+CGG + chr8_1:33196952-33196971 Msa1190320:intron 70.0%
GCACGGATGCGGACGGACAC+CGG + chr8_1:33196952-33196971 Msa1190320:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 33196352 33200449 33196352 ID=Msa1190320;Name=Msa1190320
chr8_1 mRNA 33196352 33200449 33196352 ID=Msa1190320-mRNA-1;Parent=Msa1190320;Name=Msa1190320-mRNA-1;_AED=0.18;_eAED=0.18;_QI=81|1|1|1|0.5|0.33|3|1034|227
chr8_1 exon 33196352 33196680 33196352 ID=Msa1190320-mRNA-1:exon:11189;Parent=Msa1190320-mRNA-1
chr8_1 exon 33197634 33198596 33197634 ID=Msa1190320-mRNA-1:exon:11190;Parent=Msa1190320-mRNA-1
chr8_1 exon 33199943 33200449 33199943 ID=Msa1190320-mRNA-1:exon:11191;Parent=Msa1190320-mRNA-1
chr8_1 five_prime_UTR 33196352 33196432 33196352 ID=Msa1190320-mRNA-1:five_prime_utr;Parent=Msa1190320-mRNA-1
chr8_1 CDS 33196433 33196680 33196433 ID=Msa1190320-mRNA-1:cds;Parent=Msa1190320-mRNA-1
chr8_1 CDS 33197634 33198069 33197634 ID=Msa1190320-mRNA-1:cds;Parent=Msa1190320-mRNA-1
chr8_1 three_prime_UTR 33198070 33198596 33198070 ID=Msa1190320-mRNA-1:three_prime_utr;Parent=Msa1190320-mRNA-1
chr8_1 three_prime_UTR 33199943 33200449 33199943 ID=Msa1190320-mRNA-1:three_prime_utr;Parent=Msa1190320-mRNA-1
Gene Sequence

>Msa1190320

ATGCAATCCATGGCTGTAACCACCACAACATGGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCAGGTATTCTTTCATATGATATTATACCATGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACGTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCAGGAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCACCTGCAAAGGGTCTTCATGTTCAAAGATGGAAATCTGTGTATGCAGCAGTTAGACAATTTGGTGGTTTTGTCAAAGATACAGATGTTGGTGAGCTAGCATCAGCGTTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCATAGAGCTGGTCATGCTTCAGTTTACTCTGTTGCTCAGTACAATGCCCCTTTTGAATACGATAATAGGGTGAATGAGATATGGTTCTTGTTTGATTTGGAAAATGGTTTGCATTCTATGTGA

Protein sequence

>Msa1190320

MQSMAVTTTTWKLSLFLTLISISLSGILSYDIIPCKRIECPNYDVIEAGNGYEIRRYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKSVYAAVRQFGGFVKDTDVGELASALKDSIAGTKWSSAIEQSHRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM*