AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641190 MtrunA17_Chr4g0025661 96.970 363 11 0 1 363 1 363 0.0 732
Msa0641190 MtrunA17_Chr4g0025621 68.539 356 110 2 6 360 3 357 0.0 506
Msa0641190 MtrunA17_Chr4g0022601 25.610 328 173 12 7 272 48 366 8.05e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641190 AT3G44190.1 65.730 356 121 1 7 362 12 366 1.35e-175 493
Msa0641190 AT5G22140.1 66.479 355 118 1 7 361 12 365 2.23e-174 489
Msa0641190 AT3G44190.2 64.856 313 109 1 50 362 1 312 1.45e-150 427
Msa0641190 AT5G22140.2 64.744 312 109 1 50 361 1 311 6.58e-148 420

Find 95 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTTCCACTCCTAATTT+TGG 0.077218 4_3:-41154472 None:intergenic
ACACAACCCTACCTTGTATT+TGG 0.224475 4_3:+41157051 Msa0641190:three_prime_UTR
TACAAATAGAGTCATGTTAT+TGG 0.298176 4_3:-41157108 None:intergenic
CAGACCCTGTACCCAAAATT+AGG 0.314387 4_3:+41154460 Msa0641190:CDS
ATTCAAGTTTCTACAATATG+AGG 0.339522 4_3:-41156794 None:intergenic
GCTCGTTCCATTCTGATTGT+TGG 0.351633 4_3:+41155337 Msa0641190:CDS
TGGAACCATCCTTTGCAAAA+AGG 0.351762 4_3:+41154298 Msa0641190:CDS
ATCATAGGTGGTGGTATTGC+TGG 0.353406 4_3:+41152842 Msa0641190:CDS
GATAGTCATATGCAATCTTT+TGG 0.353835 4_3:-41154416 None:intergenic
ACGATAAGTGGAAGAATTCC+TGG 0.370478 4_3:+41156713 Msa0641190:CDS
CTGCTGATAAGACTCTAAAA+TGG 0.374188 4_3:+41155473 Msa0641190:CDS
GTTATTGGAACACAATTTGA+TGG 0.378519 4_3:-41157093 None:intergenic
TAGATGAAAACTTGAGAGTC+AGG 0.392349 4_3:+41155704 Msa0641190:CDS
AATTGATATTATTAAATGTT+TGG 0.399082 4_3:+41156814 Msa0641190:exon
TGGAGATATTACAAACATTC+CGG 0.402891 4_3:+41155750 Msa0641190:CDS
GAAAATCAAAGAAGCGAAGA+AGG 0.406971 4_3:+41152785 Msa0641190:five_prime_UTR
GAATTCTTCCACTTATCGTT+AGG 0.425584 4_3:-41156709 None:intergenic
CGTTCCATTCTGATTGTTGG+AGG 0.439915 4_3:+41155340 Msa0641190:CDS
AGATTACATGGGCAAGTTTG+AGG 0.445110 4_3:+41154268 Msa0641190:CDS
TGGTAGAACAAGAAAACAAA+TGG 0.450303 4_3:+41156763 Msa0641190:CDS
TTCCGTCATATTAACAGCAC+TGG 0.453404 4_3:-41154370 None:intergenic
ATTGTTGGAGGAGGTCCTAC+TGG 0.453795 4_3:+41155352 Msa0641190:CDS
ATACAAACCACATTCGGTAT+TGG 0.458786 4_3:+41156640 Msa0641190:CDS
AAGTCAGGAGATTTGTTTGT+TGG 0.461404 4_3:+41156743 Msa0641190:CDS
TTGAGGGAGGTAAAGAATGT+TGG 0.465885 4_3:+41156609 Msa0641190:CDS
AAAATCTATCGAACTTCAGC+AGG 0.468553 4_3:+41155568 Msa0641190:CDS
TTGTGCACGGGAAAACCGTT+TGG 0.469359 4_3:+41155619 Msa0641190:CDS
GACTATCTTGTTATTGCCAC+TGG 0.472612 4_3:+41154432 Msa0641190:CDS
CACTGTTTAAGTCGACTGCT+TGG 0.476065 4_3:-41155528 None:intergenic
CCAAGGCTGTTGGAATTCAT+AGG 0.479557 4_3:+41155442 Msa0641190:CDS
CATAGAGAGTACTTCACAAA+AGG 0.482459 4_3:+41154333 Msa0641190:CDS
ATGGGCAAGTTTGAGGTCAA+TGG 0.483082 4_3:+41154275 Msa0641190:CDS
TTGCCATTCCTAACGATAAG+TGG 0.487177 4_3:+41156701 Msa0641190:CDS
GAAGAGCGAGTTGTTATCAT+AGG 0.489090 4_3:+41152827 Msa0641190:CDS
ATTCCTGGCTACATCAAGTC+AGG 0.489268 4_3:+41156728 Msa0641190:CDS
AACAATAGTTTCGCTTACCT+TGG 0.489976 4_3:+41157017 Msa0641190:three_prime_UTR
GGTAGAACAAGAAAACAAAT+GGG 0.492449 4_3:+41156764 Msa0641190:CDS
ACCAGTGTAACCTTCTTATC+CGG 0.492762 4_3:-41155409 None:intergenic
TCCATTCTGATTGTTGGAGG+AGG 0.499427 4_3:+41155343 Msa0641190:CDS
CTTCCACTTATCGTTAGGAA+TGG 0.501735 4_3:-41156704 None:intergenic
TCTCCTGACTTGATGTAGCC+AGG 0.502581 4_3:-41156731 None:intergenic
AGGGAGGTAAAGAATGTTGG+AGG 0.511205 4_3:+41156612 Msa0641190:CDS
GAAAACCGTTTGGTTCATCA+TGG 0.518075 4_3:+41155629 Msa0641190:CDS
AACTTGCGAATGATGATTGA+GGG 0.521371 4_3:+41156593 Msa0641190:CDS
GCCGTCTGCAGTCAATACTT+CGG 0.521568 4_3:-41154394 None:intergenic
GGCACAGAAGCAGGCAGAAG+TGG 0.522122 4_3:+41156562 Msa0641190:CDS
AGATTGTCATTTCTTGTGCA+CGG 0.527578 4_3:+41155606 Msa0641190:CDS
GATTGTCATTTCTTGTGCAC+GGG 0.534440 4_3:+41155607 Msa0641190:CDS
GGAAACATACAAACCACATT+CGG 0.534598 4_3:+41156634 Msa0641190:CDS
AGAATTCATCAATATAAAGA+AGG 0.536911 4_3:+41154489 Msa0641190:CDS
GAACTTGCGAATGATGATTG+AGG 0.536991 4_3:+41156592 Msa0641190:CDS
GCACAAAGGACCAAGGCTGT+TGG 0.547803 4_3:+41155432 Msa0641190:CDS
CCTATGAATTCCAACAGCCT+TGG 0.554290 4_3:-41155442 None:intergenic
TTAAGCCATGATGAACCAAA+CGG 0.555126 4_3:-41155634 None:intergenic
ACTATTGCCAATACCGAATG+TGG 0.556477 4_3:-41156647 None:intergenic
CATCACACCAAATACAAGGT+AGG 0.556935 4_3:-41157058 None:intergenic
GGATGTTCAGGGAATGATCA+AGG 0.560449 4_3:+41155681 Msa0641190:CDS
ACCTCCTCCAACAATCAGAA+TGG 0.560963 4_3:-41155344 None:intergenic
GAAATGACAATCTGCTTCGA+TGG 0.564040 4_3:-41155596 None:intergenic
TGGCAATAGTTTCACTTGGG+AGG 0.566676 4_3:+41156660 Msa0641190:CDS
TTCAAGTTTCTACAATATGA+GGG 0.567555 4_3:-41156793 None:intergenic
CGAGTTGTTATCATAGGTGG+TGG 0.569292 4_3:+41152833 Msa0641190:CDS
ATTGTGCAAGAGTCAAAAGC+TGG 0.569756 4_3:+41156935 Msa0641190:three_prime_UTR
ATCACACCAAATACAAGGTA+GGG 0.572024 4_3:-41157057 None:intergenic
AAGGTAGGGTTGTGTGTGCA+CGG 0.572885 4_3:-41157043 None:intergenic
CAAGAGTCAAAAGCTGGATG+TGG 0.575583 4_3:+41156941 Msa0641190:three_prime_UTR
ATAAAACAGGAAATCAAGCA+AGG 0.577442 4_3:+41156533 Msa0641190:intron
ACCGAAGTATTGACTGCAGA+CGG 0.586673 4_3:+41154393 Msa0641190:CDS
TCCGGATAAGAAGGTTACAC+TGG 0.588992 4_3:+41155408 Msa0641190:CDS
ATCCAGTGCTGTTAATATGA+CGG 0.589652 4_3:+41154368 Msa0641190:CDS
GTATTGGCAATAGTTTCACT+TGG 0.592229 4_3:+41156656 Msa0641190:CDS
GAGCGAGTTGTTATCATAGG+TGG 0.596638 4_3:+41152830 Msa0641190:CDS
AGATGAAAACTTGAGAGTCA+GGG 0.597572 4_3:+41155705 Msa0641190:CDS
TACAGGGTCTGCATGGCCAG+TGG 0.598096 4_3:-41154448 None:intergenic
AAAATCAAAGAAGCGAAGAA+GGG 0.599884 4_3:+41152786 Msa0641190:five_prime_UTR
GACTTAAACAGTGACACAGA+TGG 0.600678 4_3:+41155538 Msa0641190:CDS
TTGACATCACACCAAATACA+AGG 0.602246 4_3:-41157062 None:intergenic
TATTGGCAATAGTTTCACTT+GGG 0.604816 4_3:+41156657 Msa0641190:CDS
GGCAAGTTTGAGGTCAATGG+TGG 0.607275 4_3:+41154278 Msa0641190:CDS
CCTACTGGTGTAGAACTCGC+TGG 0.612045 4_3:+41155367 Msa0641190:CDS
AAATCTATCGAACTTCAGCA+GGG 0.615695 4_3:+41155569 Msa0641190:CDS
TTGTGTGTGCACGGAAACCA+AGG 0.619617 4_3:-41157034 None:intergenic
CCAGCGAGTTCTACACCAGT+AGG 0.629097 4_3:-41155367 None:intergenic
TAAAACAGGAAATCAAGCAA+GGG 0.634966 4_3:+41156534 Msa0641190:intron
CCTGTACCCAAAATTAGGAG+TGG 0.643385 4_3:+41154465 Msa0641190:CDS
TAACAGCACTGGATGTAACA+AGG 0.651302 4_3:-41154359 None:intergenic
GTTGAAATCTAAGAATGTTG+AGG 0.652877 4_3:+41155495 Msa0641190:CDS
CACTGGTGCACAAAGGACCA+AGG 0.656142 4_3:+41155425 Msa0641190:CDS
GGGAGGTAAAGAATGTTGGA+GGG 0.657144 4_3:+41156613 Msa0641190:CDS
GATGAAAACTTGAGAGTCAG+GGG 0.673851 4_3:+41155706 Msa0641190:CDS
AATCTATCGAACTTCAGCAG+GGG 0.684937 4_3:+41155570 Msa0641190:CDS
AAGGTTACACTGGTGCACAA+AGG 0.685956 4_3:+41155418 Msa0641190:CDS
GTAGAACAAGAAAACAAATG+GGG 0.698957 4_3:+41156765 Msa0641190:CDS
TTGCGAATGATGATTGAGGG+AGG 0.701459 4_3:+41156596 Msa0641190:CDS
AGATTAATTACGGATCAATG+AGG 0.710908 4_3:-41152907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATATTATTAAATGTT+TGG + chr4_3:41156814-41156833 Msa0641190:exon 10.0%
!! TATCTATTAACATAAACATT+TGG + chr4_3:41153546-41153565 Msa0641190:intron 15.0%
!! AACAAAAGATAGATAAAAAA+AGG - chr4_3:41153961-41153980 None:intergenic 15.0%
!! TTTGTATAACCATAATAAAA+CGG - chr4_3:41154039-41154058 None:intergenic 15.0%
!!! CTTTAATTTTCTGAAAATTT+AGG - chr4_3:41154067-41154086 None:intergenic 15.0%
!! TATAGTATTCGTTAAATAAT+AGG + chr4_3:41155077-41155096 Msa0641190:intron 15.0%
!! TGACATAAAATATTAAAAGT+AGG + chr4_3:41156336-41156355 Msa0641190:intron 15.0%
!! GAAAGAAGAAAGATTAATTA+CGG - chr4_3:41152920-41152939 None:intergenic 20.0%
!! AAATTGAAACTTTCAAAACT+GGG - chr4_3:41153048-41153067 None:intergenic 20.0%
!! AAAATTGAAACTTTCAAAAC+TGG - chr4_3:41153049-41153068 None:intergenic 20.0%
!!! TTTTGAAAGTTTCAATTTTG+AGG + chr4_3:41153050-41153069 Msa0641190:intron 20.0%
!! ATTTGAACTTATAAGTACTT+TGG + chr4_3:41153116-41153135 Msa0641190:intron 20.0%
!!! CTTTTTAGCTTTTTTGTAAA+CGG + chr4_3:41153187-41153206 Msa0641190:intron 20.0%
!! AAATTCCAATTATACATGAA+AGG - chr4_3:41153269-41153288 None:intergenic 20.0%
!! AAAATTGAAACTTGAAAACT+TGG - chr4_3:41153340-41153359 None:intergenic 20.0%
!! AAATAGCTTATACATACATA+AGG + chr4_3:41153985-41154004 Msa0641190:intron 20.0%
!! AATAGCTTATACATACATAA+GGG + chr4_3:41153986-41154005 Msa0641190:intron 20.0%
!!! ATGTTTTAACCGTTTTATTA+TGG + chr4_3:41154027-41154046 Msa0641190:intron 20.0%
!!! TTTTCAGAAAATTAAAGTCA+TGG + chr4_3:41154070-41154089 Msa0641190:intron 20.0%
!! AGAATTCATCAATATAAAGA+AGG + chr4_3:41154489-41154508 Msa0641190:CDS 20.0%
!! ATAATATCATAAACACTGAA+AGG - chr4_3:41154624-41154643 None:intergenic 20.0%
!!! AAATTAGTCTCAGTTATTTT+GGG - chr4_3:41155143-41155162 None:intergenic 20.0%
!!! TATGGAATAGATTCATTTTA+TGG + chr4_3:41155237-41155256 Msa0641190:intron 20.0%
!! TACATTAATATCTTCATCAT+TGG - chr4_3:41156220-41156239 None:intergenic 20.0%
!! AAAATGCAATAGATTTATAG+CGG - chr4_3:41156467-41156486 None:intergenic 20.0%
!! TCATTAAGAAATAAACTATC+AGG - chr4_3:41156507-41156526 None:intergenic 20.0%
!! TTAATGAACATCAATAAAAC+AGG + chr4_3:41156520-41156539 Msa0641190:intron 20.0%
!!! TATTCTAGTTTTGACATATT+TGG + chr4_3:41156986-41157005 Msa0641190:three_prime_UTR 20.0%
!!! TTTTTTTTGCAGTGTAAGAA+AGG + chr4_3:41152763-41152782 Msa0641190:five_prime_UTR 25.0%
! AAGATTCCAAAAACACAAAA+GGG - chr4_3:41153007-41153026 None:intergenic 25.0%
! TAAGATTCCAAAAACACAAA+AGG - chr4_3:41153008-41153027 None:intergenic 25.0%
!!! GTTTTCAAGTTTCAATTTTG+AGG + chr4_3:41153341-41153360 Msa0641190:intron 25.0%
!!! GTTGAAAAGTGTGTTTTTTT+TGG + chr4_3:41153363-41153382 Msa0641190:intron 25.0%
!!! AAGTGTGTTTTTTTTGGAAT+TGG + chr4_3:41153369-41153388 Msa0641190:intron 25.0%
! TCAAACATAGCTTATGAAAA+TGG - chr4_3:41153898-41153917 None:intergenic 25.0%
! GGATTCAATTGAATTCAATT+AGG - chr4_3:41154232-41154251 None:intergenic 25.0%
! AATTGAATTCAATTGAATCC+AGG + chr4_3:41154232-41154251 Msa0641190:intron 25.0%
!!! AGGAATATTTTGAGATTACA+TGG + chr4_3:41154256-41154275 Msa0641190:CDS 25.0%
!!! GGAATATTTTGAGATTACAT+GGG + chr4_3:41154257-41154276 Msa0641190:CDS 25.0%
!!! TGAACATATGTTTGTTTTGA+CGG + chr4_3:41154676-41154695 Msa0641190:intron 25.0%
! TAGTACAAAGTGATGTAAAA+TGG - chr4_3:41154845-41154864 None:intergenic 25.0%
!!! CAAATTAGTCTCAGTTATTT+TGG - chr4_3:41155144-41155163 None:intergenic 25.0%
!! GTGTATTGTGAATGATTTTA+TGG + chr4_3:41155219-41155238 Msa0641190:intron 25.0%
! TTAAGAAATAAACTATCAGG+AGG - chr4_3:41156504-41156523 None:intergenic 25.0%
!! TTCAAGTTTCTACAATATGA+GGG - chr4_3:41156796-41156815 None:intergenic 25.0%
!! ATTCAAGTTTCTACAATATG+AGG - chr4_3:41156797-41156816 None:intergenic 25.0%
! TACAAATAGAGTCATGTTAT+TGG - chr4_3:41157111-41157130 None:intergenic 25.0%
AAAATCAAAGAAGCGAAGAA+GGG + chr4_3:41152786-41152805 Msa0641190:five_prime_UTR 30.0%
AGATTAATTACGGATCAATG+AGG - chr4_3:41152910-41152929 None:intergenic 30.0%
! GATATACCCTTTTGTGTTTT+TGG + chr4_3:41152998-41153017 Msa0641190:intron 30.0%
GAGAACCTTTCATGTATAAT+TGG + chr4_3:41153261-41153280 Msa0641190:intron 30.0%
GTAAGTTGTTTATCCAAACA+GGG - chr4_3:41153573-41153592 None:intergenic 30.0%
AGTAAGTTGTTTATCCAAAC+AGG - chr4_3:41153574-41153593 None:intergenic 30.0%
! TAAGTATTGTGAGACTGTTT+GGG - chr4_3:41153789-41153808 None:intergenic 30.0%
! ATAAGTATTGTGAGACTGTT+TGG - chr4_3:41153790-41153809 None:intergenic 30.0%
TTTCAAGGATCTATTTGGAT+TGG - chr4_3:41153837-41153856 None:intergenic 30.0%
AACAGTTTCAAGGATCTATT+TGG - chr4_3:41153842-41153861 None:intergenic 30.0%
AATAGATCCTTGAAACTGTT+TGG + chr4_3:41153842-41153861 Msa0641190:intron 30.0%
TACATACATAAGGGCTTATA+TGG + chr4_3:41153995-41154014 Msa0641190:intron 30.0%
!!! TAGTTAGTTTTCCATGCATA+TGG + chr4_3:41154174-41154193 Msa0641190:intron 30.0%
AATCTCAAAATATTCCTTCC+TGG - chr4_3:41154253-41154272 None:intergenic 30.0%
! TATCAATGTCCTTTTTGCAA+AGG - chr4_3:41154310-41154329 None:intergenic 30.0%
! GATAGTCATATGCAATCTTT+TGG - chr4_3:41154419-41154438 None:intergenic 30.0%
! ATTCTTCCACTCCTAATTTT+GGG - chr4_3:41154474-41154493 None:intergenic 30.0%
! AATTCTTCCACTCCTAATTT+TGG - chr4_3:41154475-41154494 None:intergenic 30.0%
CTTCAATGTAAATGTATGGT+GGG - chr4_3:41154712-41154731 None:intergenic 30.0%
! AAAGTCTTTTAAACTCGTGA+TGG - chr4_3:41154958-41154977 None:intergenic 30.0%
! GAAGAAACTCAAGTATTGTT+TGG - chr4_3:41154984-41155003 None:intergenic 30.0%
! ATTAGCTTACATGAGTTCAA+AGG - chr4_3:41155006-41155025 None:intergenic 30.0%
!! AATCTTTAAAGTTCACTGCA+AGG + chr4_3:41155023-41155042 Msa0641190:intron 30.0%
GATTCATTTCATACCATGTA+AGG - chr4_3:41155053-41155072 None:intergenic 30.0%
GTTGAAATCTAAGAATGTTG+AGG + chr4_3:41155495-41155514 Msa0641190:CDS 30.0%
AACTGTGTTGAAAAATGACT+TGG + chr4_3:41155660-41155679 Msa0641190:CDS 30.0%
! AAAAATGACTTGGATGTTCA+GGG + chr4_3:41155670-41155689 Msa0641190:CDS 30.0%
! CGAAACAACATTTTTGCAAT+TGG + chr4_3:41155730-41155749 Msa0641190:CDS 30.0%
TGGAGATATTACAAACATTC+CGG + chr4_3:41155750-41155769 Msa0641190:CDS 30.0%
! ACTGTTTTCATAAGCTATCT+TGG + chr4_3:41155986-41156005 Msa0641190:intron 30.0%
TCAAACACGTCAATCTAAAT+AGG + chr4_3:41156094-41156113 Msa0641190:intron 30.0%
AAAATTTGGGCAATAAAGCA+TGG - chr4_3:41156178-41156197 None:intergenic 30.0%
GAACTCAATGGTCAAAATTT+GGG - chr4_3:41156191-41156210 None:intergenic 30.0%
AGAACTCAATGGTCAAAATT+TGG - chr4_3:41156192-41156211 None:intergenic 30.0%
! ATGAGAAGTACAATTTGTAC+TGG + chr4_3:41156246-41156265 Msa0641190:intron 30.0%
ATGCAAACACTAAAATCAGT+GGG - chr4_3:41156380-41156399 None:intergenic 30.0%
AATGCAAACACTAAAATCAG+TGG - chr4_3:41156381-41156400 None:intergenic 30.0%
ATAAAACAGGAAATCAAGCA+AGG + chr4_3:41156533-41156552 Msa0641190:intron 30.0%
TAAAACAGGAAATCAAGCAA+GGG + chr4_3:41156534-41156553 Msa0641190:intron 30.0%
TATTGGCAATAGTTTCACTT+GGG + chr4_3:41156657-41156676 Msa0641190:CDS 30.0%
TGGTAGAACAAGAAAACAAA+TGG + chr4_3:41156763-41156782 Msa0641190:CDS 30.0%
GGTAGAACAAGAAAACAAAT+GGG + chr4_3:41156764-41156783 Msa0641190:CDS 30.0%
GTAGAACAAGAAAACAAATG+GGG + chr4_3:41156765-41156784 Msa0641190:CDS 30.0%
GTTATTGGAACACAATTTGA+TGG - chr4_3:41157096-41157115 None:intergenic 30.0%
GAAAATCAAAGAAGCGAAGA+AGG + chr4_3:41152785-41152804 Msa0641190:five_prime_UTR 35.0%
! ATGAAAGGTTCTCTTGCTAT+GGG - chr4_3:41153254-41153273 None:intergenic 35.0%
ATGATACCAAGAATGCAGAA+GGG - chr4_3:41153298-41153317 None:intergenic 35.0%
ATAAACATTTGGACCCTGTT+TGG + chr4_3:41153557-41153576 Msa0641190:intron 35.0%
AAACTGTTTGGAAGAGGTTA+TGG + chr4_3:41153854-41153873 Msa0641190:intron 35.0%
GGTATGTAATCACAAGTGTT+AGG + chr4_3:41154091-41154110 Msa0641190:intron 35.0%
GAATTCAATTGAATCCAGGA+AGG + chr4_3:41154236-41154255 Msa0641190:intron 35.0%
! AATGTCCTTTTTGCAAAGGA+TGG - chr4_3:41154306-41154325 None:intergenic 35.0%
!! CTTTTGTGAAGTACTCTCTA+TGG - chr4_3:41154335-41154354 None:intergenic 35.0%
!! CATAGAGAGTACTTCACAAA+AGG + chr4_3:41154333-41154352 Msa0641190:CDS 35.0%
! ATCCAGTGCTGTTAATATGA+CGG + chr4_3:41154368-41154387 Msa0641190:CDS 35.0%
AATTGCTTAGCCAATCTTTG+AGG + chr4_3:41154644-41154663 Msa0641190:intron 35.0%
AGTCTACTATCCTCAAAGAT+TGG - chr4_3:41154657-41154676 None:intergenic 35.0%
GCTTCAATGTAAATGTATGG+TGG - chr4_3:41154713-41154732 None:intergenic 35.0%
GGAGCTTCAATGTAAATGTA+TGG - chr4_3:41154716-41154735 None:intergenic 35.0%
CACGGATAGTAAAAAAACAG+TGG + chr4_3:41154771-41154790 Msa0641190:intron 35.0%
TTGTACTACACCATGTAATG+CGG + chr4_3:41154857-41154876 Msa0641190:intron 35.0%
CATTTCATACCATGTAAGGA+AGG - chr4_3:41155049-41155068 None:intergenic 35.0%
! GGGTTCTAATATTTCTTCCA+TGG - chr4_3:41155123-41155142 None:intergenic 35.0%
!!! AGAGATAGCTGTTGATTTTC+CGG + chr4_3:41155390-41155409 Msa0641190:CDS 35.0%
!!! TGTTGATTTTCCGGATAAGA+AGG + chr4_3:41155399-41155418 Msa0641190:CDS 35.0%
! CTGCTGATAAGACTCTAAAA+TGG + chr4_3:41155473-41155492 Msa0641190:CDS 35.0%
AAAATCTATCGAACTTCAGC+AGG + chr4_3:41155568-41155587 Msa0641190:CDS 35.0%
AAATCTATCGAACTTCAGCA+GGG + chr4_3:41155569-41155588 Msa0641190:CDS 35.0%
! AGATTGTCATTTCTTGTGCA+CGG + chr4_3:41155606-41155625 Msa0641190:CDS 35.0%
TTAAGCCATGATGAACCAAA+CGG - chr4_3:41155637-41155656 None:intergenic 35.0%
! GAAAAATGACTTGGATGTTC+AGG + chr4_3:41155669-41155688 Msa0641190:CDS 35.0%
TAGATGAAAACTTGAGAGTC+AGG + chr4_3:41155704-41155723 Msa0641190:CDS 35.0%
AGATGAAAACTTGAGAGTCA+GGG + chr4_3:41155705-41155724 Msa0641190:CDS 35.0%
GTGGTTACATATACAAACAG+TGG - chr4_3:41155817-41155836 None:intergenic 35.0%
AAACACTTGTGAGACTGTTT+GGG - chr4_3:41156058-41156077 None:intergenic 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr4_3:41156059-41156078 None:intergenic 35.0%
TTTAGTGTTTGCATTTCTCG+AGG + chr4_3:41156386-41156405 Msa0641190:intron 35.0%
AACTTGCGAATGATGATTGA+GGG + chr4_3:41156593-41156612 Msa0641190:CDS 35.0%
GGAAACATACAAACCACATT+CGG + chr4_3:41156634-41156653 Msa0641190:CDS 35.0%
ATACAAACCACATTCGGTAT+TGG + chr4_3:41156640-41156659 Msa0641190:CDS 35.0%
! GTATTGGCAATAGTTTCACT+TGG + chr4_3:41156656-41156675 Msa0641190:CDS 35.0%
GAATTCTTCCACTTATCGTT+AGG - chr4_3:41156712-41156731 None:intergenic 35.0%
! AAGTCAGGAGATTTGTTTGT+TGG + chr4_3:41156743-41156762 Msa0641190:CDS 35.0%
! CTTTTTATGCTGCTGAGAAA+TGG + chr4_3:41156896-41156915 Msa0641190:three_prime_UTR 35.0%
AACAATAGTTTCGCTTACCT+TGG + chr4_3:41157017-41157036 Msa0641190:three_prime_UTR 35.0%
ATCACACCAAATACAAGGTA+GGG - chr4_3:41157060-41157079 None:intergenic 35.0%
TTGACATCACACCAAATACA+AGG - chr4_3:41157065-41157084 None:intergenic 35.0%
GAAGAGCGAGTTGTTATCAT+AGG + chr4_3:41152827-41152846 Msa0641190:CDS 40.0%
CATGAAAGGTTCTCTTGCTA+TGG - chr4_3:41153255-41153274 None:intergenic 40.0%
TGTTTACCCTTCTGCATTCT+TGG + chr4_3:41153289-41153308 Msa0641190:intron 40.0%
CATGATACCAAGAATGCAGA+AGG - chr4_3:41153299-41153318 None:intergenic 40.0%
TTTCTATGATGCACAGACAC+AGG + chr4_3:41153476-41153495 Msa0641190:intron 40.0%
TCCTTGAAACTGTTTGGAAG+AGG + chr4_3:41153848-41153867 Msa0641190:intron 40.0%
ACCTCTTCCAAACAGTTTCA+AGG - chr4_3:41153852-41153871 None:intergenic 40.0%
AGATTACATGGGCAAGTTTG+AGG + chr4_3:41154268-41154287 Msa0641190:CDS 40.0%
TGGAACCATCCTTTGCAAAA+AGG + chr4_3:41154298-41154317 Msa0641190:CDS 40.0%
! TAACAGCACTGGATGTAACA+AGG - chr4_3:41154362-41154381 None:intergenic 40.0%
TTCCGTCATATTAACAGCAC+TGG - chr4_3:41154373-41154392 None:intergenic 40.0%
!! GACTATCTTGTTATTGCCAC+TGG + chr4_3:41154432-41154451 Msa0641190:CDS 40.0%
!! CACTCCTAATTTTGGGTACA+GGG - chr4_3:41154467-41154486 None:intergenic 40.0%
GGCGATCATTATGGTATTGT+AGG - chr4_3:41154603-41154622 None:intergenic 40.0%
ACACTGAAAGGCGATCATTA+TGG - chr4_3:41154612-41154631 None:intergenic 40.0%
ATGAAAGGCAAGCTACTAGT+TGG - chr4_3:41154737-41154756 None:intergenic 40.0%
GATTGACAACACTGGATGAA+AGG - chr4_3:41154752-41154771 None:intergenic 40.0%
TCATCCAGTGTTGTCAATCA+CGG + chr4_3:41154753-41154772 Msa0641190:intron 40.0%
CTCTATTGTTCCGCATTACA+TGG - chr4_3:41154870-41154889 None:intergenic 40.0%
CATGTAATGCGGAACAATAG+AGG + chr4_3:41154868-41154887 Msa0641190:intron 40.0%
TCCATGGTGATACAAGAAGT+CGG - chr4_3:41155107-41155126 None:intergenic 40.0%
ACCAGTGTAACCTTCTTATC+CGG - chr4_3:41155412-41155431 None:intergenic 40.0%
GACTTAAACAGTGACACAGA+TGG + chr4_3:41155538-41155557 Msa0641190:CDS 40.0%
AATCTATCGAACTTCAGCAG+GGG + chr4_3:41155570-41155589 Msa0641190:CDS 40.0%
GAAATGACAATCTGCTTCGA+TGG - chr4_3:41155599-41155618 None:intergenic 40.0%
! GATTGTCATTTCTTGTGCAC+GGG + chr4_3:41155607-41155626 Msa0641190:CDS 40.0%
! GAAAACCGTTTGGTTCATCA+TGG + chr4_3:41155629-41155648 Msa0641190:CDS 40.0%
GATGAAAACTTGAGAGTCAG+GGG + chr4_3:41155706-41155725 Msa0641190:CDS 40.0%
TGCTAATAGCAAGCACTTAC+CGG - chr4_3:41155772-41155791 None:intergenic 40.0%
GAGTTGAGTGTGCTATGAAA+AGG - chr4_3:41155841-41155860 None:intergenic 40.0%
! AAGCTATCTTGGAGAGCTTT+TGG + chr4_3:41155997-41156016 Msa0641190:intron 40.0%
! TTGGAGCATCACAAGACTAA+GGG - chr4_3:41156120-41156139 None:intergenic 40.0%
! ATTGGAGCATCACAAGACTA+AGG - chr4_3:41156121-41156140 None:intergenic 40.0%
CATTGGTGAGTAGAACTCAA+TGG - chr4_3:41156203-41156222 None:intergenic 40.0%
CGGAGAGTCAAAGTTTACAT+AGG - chr4_3:41156447-41156466 None:intergenic 40.0%
! GGAAATCAAGCAAGGGTTTT+TGG + chr4_3:41156541-41156560 Msa0641190:intron 40.0%
GAACTTGCGAATGATGATTG+AGG + chr4_3:41156592-41156611 Msa0641190:CDS 40.0%
TTGAGGGAGGTAAAGAATGT+TGG + chr4_3:41156609-41156628 Msa0641190:CDS 40.0%
ACTATTGCCAATACCGAATG+TGG - chr4_3:41156650-41156669 None:intergenic 40.0%
TTGCCATTCCTAACGATAAG+TGG + chr4_3:41156701-41156720 Msa0641190:CDS 40.0%
CTTCCACTTATCGTTAGGAA+TGG - chr4_3:41156707-41156726 None:intergenic 40.0%
ACGATAAGTGGAAGAATTCC+TGG + chr4_3:41156713-41156732 Msa0641190:CDS 40.0%
ATTGTGCAAGAGTCAAAAGC+TGG + chr4_3:41156935-41156954 Msa0641190:three_prime_UTR 40.0%
ACACAACCCTACCTTGTATT+TGG + chr4_3:41157051-41157070 Msa0641190:three_prime_UTR 40.0%
CATCACACCAAATACAAGGT+AGG - chr4_3:41157061-41157080 None:intergenic 40.0%
GAGCGAGTTGTTATCATAGG+TGG + chr4_3:41152830-41152849 Msa0641190:CDS 45.0%
CGAGTTGTTATCATAGGTGG+TGG + chr4_3:41152833-41152852 Msa0641190:CDS 45.0%
! ATCATAGGTGGTGGTATTGC+TGG + chr4_3:41152842-41152861 Msa0641190:CDS 45.0%
!! GTTTGACTTGTCTGTGCACA+TGG + chr4_3:41153209-41153228 Msa0641190:intron 45.0%
CTCAATCCAAACAGACCTAC+TGG - chr4_3:41153515-41153534 None:intergenic 45.0%
TCTGAATGTCTGACACGTGT+TGG - chr4_3:41154124-41154143 None:intergenic 45.0%
CAATTCGACAGCCATATGCA+TGG - chr4_3:41154188-41154207 None:intergenic 45.0%
! ATGGGCAAGTTTGAGGTCAA+TGG + chr4_3:41154275-41154294 Msa0641190:CDS 45.0%
!! ACCGAAGTATTGACTGCAGA+CGG + chr4_3:41154393-41154412 Msa0641190:CDS 45.0%
CAGACCCTGTACCCAAAATT+AGG + chr4_3:41154460-41154479 Msa0641190:CDS 45.0%
!! CCACTCCTAATTTTGGGTAC+AGG - chr4_3:41154468-41154487 None:intergenic 45.0%
CCTGTACCCAAAATTAGGAG+TGG + chr4_3:41154465-41154484 Msa0641190:CDS 45.0%
CTATCCGTGATTGACAACAC+TGG - chr4_3:41154760-41154779 None:intergenic 45.0%
TGCACTACAATGCCACAACA+CGG + chr4_3:41154810-41154829 Msa0641190:intron 45.0%
ATGGTGATACAAGAAGTCGG+TGG - chr4_3:41155104-41155123 None:intergenic 45.0%
! ACCGACTTCTTGTATCACCA+TGG + chr4_3:41155103-41155122 Msa0641190:intron 45.0%
GCTCGTTCCATTCTGATTGT+TGG + chr4_3:41155337-41155356 Msa0641190:CDS 45.0%
CGTTCCATTCTGATTGTTGG+AGG + chr4_3:41155340-41155359 Msa0641190:CDS 45.0%
TCCATTCTGATTGTTGGAGG+AGG + chr4_3:41155343-41155362 Msa0641190:CDS 45.0%
ACCTCCTCCAACAATCAGAA+TGG - chr4_3:41155347-41155366 None:intergenic 45.0%
TCCGGATAAGAAGGTTACAC+TGG + chr4_3:41155408-41155427 Msa0641190:CDS 45.0%
AAGGTTACACTGGTGCACAA+AGG + chr4_3:41155418-41155437 Msa0641190:CDS 45.0%
CCTATGAATTCCAACAGCCT+TGG - chr4_3:41155445-41155464 None:intergenic 45.0%
CCAAGGCTGTTGGAATTCAT+AGG + chr4_3:41155442-41155461 Msa0641190:CDS 45.0%
CACTGTTTAAGTCGACTGCT+TGG - chr4_3:41155531-41155550 None:intergenic 45.0%
GGATGTTCAGGGAATGATCA+AGG + chr4_3:41155681-41155700 Msa0641190:CDS 45.0%
GAGTGTGCTATGAAAAGGAG+TGG - chr4_3:41155836-41155855 None:intergenic 45.0%
CTCAACTCAACAAGTTGCTC+AGG + chr4_3:41155853-41155872 Msa0641190:intron 45.0%
CAAGTTGCTCAGGTCATGTT+TGG + chr4_3:41155863-41155882 Msa0641190:intron 45.0%
CGAGGAACAGACAACATCAT+TGG - chr4_3:41156139-41156158 None:intergenic 45.0%
! GGTCTCAGTTTAGTTCAACG+AGG - chr4_3:41156157-41156176 None:intergenic 45.0%
TTGCGAATGATGATTGAGGG+AGG + chr4_3:41156596-41156615 Msa0641190:CDS 45.0%
AGGGAGGTAAAGAATGTTGG+AGG + chr4_3:41156612-41156631 Msa0641190:CDS 45.0%
GGGAGGTAAAGAATGTTGGA+GGG + chr4_3:41156613-41156632 Msa0641190:CDS 45.0%
TGGCAATAGTTTCACTTGGG+AGG + chr4_3:41156660-41156679 Msa0641190:CDS 45.0%
ATTCCTGGCTACATCAAGTC+AGG + chr4_3:41156728-41156747 Msa0641190:CDS 45.0%
CAAGAGTCAAAAGCTGGATG+TGG + chr4_3:41156941-41156960 Msa0641190:three_prime_UTR 45.0%
CCAAACAGACCTACTGGTGT+CGG - chr4_3:41153509-41153528 None:intergenic 50.0%
! GGCAAGTTTGAGGTCAATGG+TGG + chr4_3:41154278-41154297 Msa0641190:CDS 50.0%
GCCGTCTGCAGTCAATACTT+CGG - chr4_3:41154397-41154416 None:intergenic 50.0%
!! TTTTGGGTACAGGGTCTGCA+TGG - chr4_3:41154458-41154477 None:intergenic 50.0%
GTTGTGGCATTGTAGTGCAG+CGG - chr4_3:41154809-41154828 None:intergenic 50.0%
CAATGCCACAACACGGCTAT+AGG + chr4_3:41154817-41154836 Msa0641190:intron 50.0%
ACTGCAAGGCCTTCCTTACA+TGG + chr4_3:41155037-41155056 Msa0641190:intron 50.0%
ATTGTTGGAGGAGGTCCTAC+TGG + chr4_3:41155352-41155371 Msa0641190:CDS 50.0%
TTGTGCACGGGAAAACCGTT+TGG + chr4_3:41155619-41155638 Msa0641190:CDS 50.0%
!!! AGGGTTTTTGGCACAGAAGC+AGG + chr4_3:41156553-41156572 Msa0641190:CDS 50.0%
! TCTCCTGACTTGATGTAGCC+AGG - chr4_3:41156734-41156753 None:intergenic 50.0%
TTGTGTGTGCACGGAAACCA+AGG - chr4_3:41157037-41157056 None:intergenic 50.0%
AAGGTAGGGTTGTGTGTGCA+CGG - chr4_3:41157046-41157065 None:intergenic 50.0%
CCGACACCAGTAGGTCTGTT+TGG + chr4_3:41153506-41153525 Msa0641190:intron 55.0%
TGGAGCCTATAGCCGTGTTG+TGG - chr4_3:41154825-41154844 None:intergenic 55.0%
CCAGCGAGTTCTACACCAGT+AGG - chr4_3:41155370-41155389 None:intergenic 55.0%
CCTACTGGTGTAGAACTCGC+TGG + chr4_3:41155367-41155386 Msa0641190:CDS 55.0%
CACTGGTGCACAAAGGACCA+AGG + chr4_3:41155425-41155444 Msa0641190:CDS 55.0%
GCACAAAGGACCAAGGCTGT+TGG + chr4_3:41155432-41155451 Msa0641190:CDS 55.0%
GGCACAACACCGACACCAGT+AGG + chr4_3:41153497-41153516 Msa0641190:intron 60.0%
TACAGGGTCTGCATGGCCAG+TGG - chr4_3:41154451-41154470 None:intergenic 60.0%
GGCACAGAAGCAGGCAGAAG+TGG + chr4_3:41156562-41156581 Msa0641190:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 41152730 41157210 41152730 ID=Msa0641190;Name=Msa0641190
chr4_3 mRNA 41152730 41157210 41152730 ID=Msa0641190-mRNA-1;Parent=Msa0641190;Name=Msa0641190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|4|396|363
chr4_3 exon 41152730 41152918 41152730 ID=Msa0641190-mRNA-1:exon:9246;Parent=Msa0641190-mRNA-1
chr4_3 exon 41154254 41154510 41154254 ID=Msa0641190-mRNA-1:exon:9247;Parent=Msa0641190-mRNA-1
chr4_3 exon 41155317 41155771 41155317 ID=Msa0641190-mRNA-1:exon:9248;Parent=Msa0641190-mRNA-1
chr4_3 exon 41156542 41157210 41156542 ID=Msa0641190-mRNA-1:exon:9249;Parent=Msa0641190-mRNA-1
chr4_3 five_prime_UTR 41152730 41152811 41152730 ID=Msa0641190-mRNA-1:five_prime_utr;Parent=Msa0641190-mRNA-1
chr4_3 CDS 41152812 41152918 41152812 ID=Msa0641190-mRNA-1:cds;Parent=Msa0641190-mRNA-1
chr4_3 CDS 41154254 41154510 41154254 ID=Msa0641190-mRNA-1:cds;Parent=Msa0641190-mRNA-1
chr4_3 CDS 41155317 41155771 41155317 ID=Msa0641190-mRNA-1:cds;Parent=Msa0641190-mRNA-1
chr4_3 CDS 41156542 41156814 41156542 ID=Msa0641190-mRNA-1:cds;Parent=Msa0641190-mRNA-1
chr4_3 three_prime_UTR 41156815 41157210 41156815 ID=Msa0641190-mRNA-1:three_prime_utr;Parent=Msa0641190-mRNA-1
Gene Sequence

>Msa0641190

ATGAGAAAACTAAATGAAGAGCGAGTTGTTATCATAGGTGGTGGTATTGCTGGTTCTATCGTCGCTAAATCTCTTCAATTTCATTCTCATGTCATCCTCATTGATCCGAAGGAATATTTTGAGATTACATGGGCAAGTTTGAGGTCAATGGTGGAACCATCCTTTGCAAAAAGGACATTGATAAACCATAGAGAGTACTTCACAAAAGGTGACCTTGTTACATCCAGTGCTGTTAATATGACGGAAACCGAAGTATTGACTGCAGACGGCCAAAAGATTGCATATGACTATCTTGTTATTGCCACTGGCCATGCAGACCCTGTACCCAAAATTAGGAGTGGAAGAATTCATCAATATAAAGAAGAAAATGAAAAGATAAAATCTGCTCGTTCCATTCTGATTGTTGGAGGAGGTCCTACTGGTGTAGAACTCGCTGGAGAGATAGCTGTTGATTTTCCGGATAAGAAGGTTACACTGGTGCACAAAGGACCAAGGCTGTTGGAATTCATAGGCTCAAAAGCTGCTGATAAGACTCTAAAATGGTTGAAATCTAAGAATGTTGAGGTGAAACTAAACCAAGCAGTCGACTTAAACAGTGACACAGATGGACACAACAAAATCTATCGAACTTCAGCAGGGGATACCATCGAAGCAGATTGTCATTTCTTGTGCACGGGAAAACCGTTTGGTTCATCATGGCTTAAAGAAACTGTGTTGAAAAATGACTTGGATGTTCAGGGAATGATCAAGGTAGATGAAAACTTGAGAGTCAGGGGTCGAAACAACATTTTTGCAATTGGAGATATTACAAACATTCCGGAAATCAAGCAAGGGTTTTTGGCACAGAAGCAGGCAGAAGTGGTTGCGAAGAACTTGCGAATGATGATTGAGGGAGGTAAAGAATGTTGGAGGGAAACATACAAACCACATTCGGTATTGGCAATAGTTTCACTTGGGAGGTATGATGCAGTCGCACAGTTGCCATTCCTAACGATAAGTGGAAGAATTCCTGGCTACATCAAGTCAGGAGATTTGTTTGTTGGTAGAACAAGAAAACAAATGGGGCTCAGCCCTCATATTGTAGAAACTTGA

Protein sequence

>Msa0641190

MRKLNEERVVIIGGGIAGSIVAKSLQFHSHVILIDPKEYFEITWASLRSMVEPSFAKRTLINHREYFTKGDLVTSSAVNMTETEVLTADGQKIAYDYLVIATGHADPVPKIRSGRIHQYKEENEKIKSARSILIVGGGPTGVELAGEIAVDFPDKKVTLVHKGPRLLEFIGSKAADKTLKWLKSKNVEVKLNQAVDLNSDTDGHNKIYRTSAGDTIEADCHFLCTGKPFGSSWLKETVLKNDLDVQGMIKVDENLRVRGRNNIFAIGDITNIPEIKQGFLAQKQAEVVAKNLRMMIEGGKECWRETYKPHSVLAIVSLGRYDAVAQLPFLTISGRIPGYIKSGDLFVGRTRKQMGLSPHIVET*