AlfalfaGEDB | Msa1364910

M. sativa cultivar zhongmu-4 / Msa1364910

KEGG: K12859
GO: GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904
PFAM: PF02966.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364910	XP_003603529.1	100.000	142	0	0	1	142	1	142	2.48e-102	299

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364910	sp\|Q9FE62\|YLS8_ARATH	97.183	142	4	0	1	142	1	142	1.90e-103	294

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364910	A0A2K3NA50	100.000	142	0	0	1	142	1	142	1.19e-102	299

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008410	Msa1364910	0.816721	4.778079e-52	-8.615850e-47
Msa0015300	Msa1364910	0.816350	5.785180e-52	-8.615850e-47
Msa0055150	Msa1364910	0.800238	1.583217e-48	-8.615850e-47
Msa0064350	Msa1364910	0.847693	9.842357e-60	-8.615850e-47
Msa0064380	Msa1364910	0.842748	2.139495e-58	-8.615850e-47
Msa0082280	Msa1364910	0.840900	6.579147e-58	-8.615850e-47
Msa0084650	Msa1364910	0.804093	2.549041e-49	-8.615850e-47
Msa1345040	Msa1364910	0.800478	1.414355e-48	-8.615850e-47
Msa1345450	Msa1364910	0.824643	7.222947e-54	-8.615850e-47
Msa1364910	Msa1365150	0.816257	6.069832e-52	-8.615850e-47
Msa1364910	Msa1367880	0.806572	7.706283e-50	-8.615850e-47
Msa1364910	Msa1370860	0.844473	7.395870e-59	-8.615850e-47
Msa1364910	Msa1392200	0.808346	3.240355e-50	-8.615850e-47
Msa1364910	Msa1393740	0.832997	6.866524e-56	-8.615850e-47
Msa1364910	Msa1397810	0.823838	1.116175e-53	-8.615850e-47
Msa1364910	Msa1404010	0.803596	3.232976e-49	-8.615850e-47
Msa1364910	Msa1404190	0.843035	1.794417e-58	-8.615850e-47
Msa1364910	Msa1435750	0.936035	3.302005e-97	-8.615850e-47
Msa1364910	Msa1442850	0.824535	7.659861e-54	-8.615850e-47
Msa1364910	Msa1465080	0.834755	2.494147e-56	-8.615850e-47
Msa0623700	Msa1364910	0.821949	3.075279e-53	-8.615850e-47
Msa0627910	Msa1364910	0.808073	3.703721e-50	-8.615850e-47
Msa0647490	Msa1364910	0.826486	2.642430e-54	-8.615850e-47
Msa0663900	Msa1364910	0.818995	1.464861e-52	-8.615850e-47
Msa0680240	Msa1364910	0.821589	3.725766e-53	-8.615850e-47
Msa0682780	Msa1364910	0.849977	2.286587e-60	-8.615850e-47
Msa0687630	Msa1364910	0.860145	2.533200e-63	-8.615850e-47
Msa0692840	Msa1364910	0.800609	1.330024e-48	-8.615850e-47
Msa0692940	Msa1364910	0.829166	5.992745e-55	-8.615850e-47
Msa0706960	Msa1364910	0.825307	5.034283e-54	-8.615850e-47
Msa0713790	Msa1364910	0.804358	2.244183e-49	-8.615850e-47
Msa0713820	Msa1364910	0.840116	1.055527e-57	-8.615850e-47
Msa0718740	Msa1364910	0.800905	1.157310e-48	-8.615850e-47
Msa0743260	Msa1364910	0.805488	1.302749e-49	-8.615850e-47
Msa0756060	Msa1364910	0.820891	5.396348e-53	-8.615850e-47
Msa0797120	Msa1364910	0.800816	1.206938e-48	-8.615850e-47
Msa0797750	Msa1364910	0.819554	1.092853e-52	-8.615850e-47
Msa0806920	Msa1364910	0.822090	2.852333e-53	-8.615850e-47
Msa0831870	Msa1364910	0.809862	1.533836e-50	-8.615850e-47
Msa0837660	Msa1364910	0.861319	1.115590e-63	-8.615850e-47
Msa0121820	Msa1364910	0.841588	4.338363e-58	-8.615850e-47
Msa0140110	Msa1364910	0.823827	1.123023e-53	-8.615850e-47
Msa0155430	Msa1364910	0.851695	7.505179e-61	-8.615850e-47
Msa0174770	Msa1364910	0.840393	8.935086e-58	-8.615850e-47
Msa0191050	Msa1364910	0.819680	1.022853e-52	-8.615850e-47
Msa0194480	Msa1364910	0.849481	3.145484e-60	-8.615850e-47
Msa0199690	Msa1364910	0.871407	6.996240e-67	-8.615850e-47
Msa0233350	Msa1364910	0.821440	4.032201e-53	-8.615850e-47
Msa0236270	Msa1364910	0.824220	9.082026e-54	-8.615850e-47
Msa1227690	Msa1364910	0.814287	1.663878e-51	-8.615850e-47
Msa1234980	Msa1364910	0.829903	3.967473e-55	-8.615850e-47
Msa1236960	Msa1364910	0.807115	5.916214e-50	-8.615850e-47
Msa1249870	Msa1364910	0.802885	4.536303e-49	-8.615850e-47
Msa1269300	Msa1364910	0.837593	4.743336e-57	-8.615850e-47
Msa1283170	Msa1364910	0.807720	4.403708e-50	-8.615850e-47
Msa1296830	Msa1364910	0.805992	1.021197e-49	-8.615850e-47
Msa1304820	Msa1364910	0.862961	3.496667e-64	-8.615850e-47
Msa1307950	Msa1364910	0.825335	4.958864e-54	-8.615850e-47
Msa1310690	Msa1364910	0.837073	6.445509e-57	-8.615850e-47
Msa1316830	Msa1364910	0.819790	9.650455e-53	-8.615850e-47
Msa1320390	Msa1364910	0.833407	5.430044e-56	-8.615850e-47
Msa1335940	Msa1364910	0.812267	4.620912e-51	-8.615850e-47
Msa1336950	Msa1364910	0.806915	6.524496e-50	-8.615850e-47
Msa0369050	Msa1364910	0.815668	8.214661e-52	-8.615850e-47
Msa0376690	Msa1364910	0.825112	5.598754e-54	-8.615850e-47
Msa0378490	Msa1364910	0.803725	3.040159e-49	-8.615850e-47
Msa0380040	Msa1364910	0.818935	1.511447e-52	-8.615850e-47
Msa0394400	Msa1364910	0.810595	1.065855e-50	-8.615850e-47
Msa0402330	Msa1364910	0.823767	1.160257e-53	-8.615850e-47
Msa0415430	Msa1364910	0.831213	1.896524e-55	-8.615850e-47
Msa0425220	Msa1364910	0.810477	1.130563e-50	-8.615850e-47
Msa0429290	Msa1364910	0.833744	4.472380e-56	-8.615850e-47
Msa0430620	Msa1364910	0.807763	4.312506e-50	-8.615850e-47
Msa0471590	Msa1364910	0.846514	2.071011e-59	-8.615850e-47
Msa0475580	Msa1364910	0.825764	3.923048e-54	-8.615850e-47
Msa0481480	Msa1364910	0.844973	5.423209e-59	-8.615850e-47
Msa0481810	Msa1364910	0.815945	7.125337e-52	-8.615850e-47
Msa1082700	Msa1364910	0.802729	4.886663e-49	-8.615850e-47
Msa1089840	Msa1364910	0.833113	6.425545e-56	-8.615850e-47
Msa0241780	Msa1364910	0.804734	1.874037e-49	-8.615850e-47
Msa0242230	Msa1364910	0.801224	9.958225e-49	-8.615850e-47
Msa0267970	Msa1364910	0.811544	6.640419e-51	-8.615850e-47
Msa0280430	Msa1364910	0.831567	1.551934e-55	-8.615850e-47
Msa0304590	Msa1364910	0.821913	3.135760e-53	-8.615850e-47
Msa0304660	Msa1364910	0.812083	5.068246e-51	-8.615850e-47
Msa0331700	Msa1364910	0.810332	1.214951e-50	-8.615850e-47
Msa0355270	Msa1364910	0.817576	3.068990e-52	-8.615850e-47
Msa1126510	Msa1364910	0.813772	2.161441e-51	-8.615850e-47
Msa1126770	Msa1364910	0.837499	5.012725e-57	-8.615850e-47
Msa1166010	Msa1364910	0.813576	2.386294e-51	-8.615850e-47
Msa1166860	Msa1364910	0.818259	2.151742e-52	-8.615850e-47
Msa1184370	Msa1364910	0.819994	8.668190e-53	-8.615850e-47
Msa1210810	Msa1364910	0.803278	3.762673e-49	-8.615850e-47
Msa0485850	Msa1364910	0.848052	7.837549e-60	-8.615850e-47
Msa0508590	Msa1364910	0.851014	1.169361e-60	-8.615850e-47
Msa0508630	Msa1364910	0.850986	1.190584e-60	-8.615850e-47
Msa0519220	Msa1364910	0.819094	1.390927e-52	-8.615850e-47
Msa0524180	Msa1364910	0.803637	3.170301e-49	-8.615850e-47
Msa0552810	Msa1364910	0.841366	4.963751e-58	-8.615850e-47
Msa0581070	Msa1364910	0.816662	4.927285e-52	-8.615850e-47
Msa0966270	Msa1364910	0.816110	6.545851e-52	-8.615850e-47
Msa0974810	Msa1364910	0.826498	2.624734e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364910	MtrunA17_Chr3g0138901	100.000	142	0	0	1	142	1	142	2.28e-106	299
Msa1364910	MtrunA17_Chr1g0168831	99.296	142	1	0	1	142	1	142	6.62e-106	298
Msa1364910	MtrunA17_Chr1g0190691	37.956	137	79	3	1	133	1	135	2.04e-27	99.4
Msa1364910	MtrunA17_Chr7g0245801	37.226	137	80	3	1	133	1	135	2.99e-26	96.7
Msa1364910	MtrunA17_Chr4g0038341	60.526	76	21	1	1	76	1	67	7.72e-25	90.5
Msa1364910	MtrunA17_Chr1g0175531	70.732	41	11	1	102	141	2	42	8.22e-15	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364910	AT5G08290.1	97.183	142	4	0	1	142	1	142	1.93e-104	294
Msa1364910	AT5G08290.2	98.039	102	2	0	41	142	1	102	1.78e-71	209
Msa1364910	AT3G24730.1	36.496	137	81	3	1	133	9	143	1.96e-24	92.4

Find 61 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCACAGTTATGTTCTTCTTT+AGG	0.229575	tig0018186:-267372	Msa1364910:CDS
GTACCAAATGAGGTAGATTT+TGG	0.235671	tig0018186:+267114	None:intergenic
CGTCTCGTTGTCATCCGTTT+TGG	0.320244	tig0018186:-268266	Msa1364910:CDS
CATAAAACATAAATCTTTGT+TGG	0.327339	tig0018186:+266973	None:intergenic
GTACTTGGTGGAGTAATCTT+TGG	0.329915	tig0018186:+267210	None:intergenic
GACAGTTACACACTTGATAA+AGG	0.331693	tig0018186:+267089	None:intergenic
GAAACAACAACAAGATCAAT+TGG	0.342414	tig0018186:-267318	Msa1364910:CDS
TGTCCAAAATCTACCTCATT+TGG	0.347328	tig0018186:-267117	Msa1364910:three_prime_UTR
GCCTCACTTGCATTCGGGAT+GGG	0.362710	tig0018186:-268321	Msa1364910:CDS
CATGCTGCCTCACTTGCATT+CGG	0.374586	tig0018186:-268327	Msa1364910:CDS
TTCGGGATGGGCTGTTGATC+AGG	0.384531	tig0018186:-268309	Msa1364910:CDS
GTGTGGAGACAAAGTGAAAA+AGG	0.390098	tig0018186:+268447	None:intergenic
TACTTGGTGGAGTAATCTTT+GGG	0.403435	tig0018186:+267211	None:intergenic
ACCCTAATTAAGAAAAGAAA+AGG	0.408185	tig0018186:-268380	Msa1364910:five_prime_UTR
AAGTGTTTGATTAAAAGAAA+TGG	0.421926	tig0018186:-266946	Msa1364910:three_prime_UTR
TGTTATTGTTGTTGAATTGA+AGG	0.430898	tig0018186:-268408	Msa1364910:five_prime_UTR
TTGGGCTATGAAGGACAAAC+AGG	0.451623	tig0018186:-267299	Msa1364910:CDS
CAAGATCAATTGGGCTATGA+AGG	0.451707	tig0018186:-267308	Msa1364910:CDS
TACATTCTAGTAACGGTACT+TGG	0.457670	tig0018186:+267195	None:intergenic
TGCCTCACTTGCATTCGGGA+TGG	0.468994	tig0018186:-268322	Msa1364910:CDS
TGTTGTTGTTTCCAGTTCCA+AGG	0.469561	tig0018186:+267329	None:intergenic
ACAGTTACACACTTGATAAA+GGG	0.481529	tig0018186:+267090	None:intergenic
GTGTATGCCCAACATGTACT+TGG	0.485312	tig0018186:-267005	Msa1364910:three_prime_UTR
ATCATGATAGACCTTGGAAC+TGG	0.486256	tig0018186:-267340	Msa1364910:CDS
ATGCTGCCTCACTTGCATTC+GGG	0.490375	tig0018186:-268326	Msa1364910:CDS
CCCTAATTAAGAAAAGAAAA+GGG	0.493267	tig0018186:-268379	Msa1364910:five_prime_UTR
CACATAATCCAAGTACATGT+TGG	0.495823	tig0018186:+266997	None:intergenic
ACTAGAATGTATCAATCTAC+AGG	0.497165	tig0018186:-267183	Msa1364910:exon
ACATAATCCAAGTACATGTT+GGG	0.503365	tig0018186:+266998	None:intergenic
AAACAACAACAAGATCAATT+GGG	0.514098	tig0018186:-267317	Msa1364910:CDS
TCATACATAGTGTTAAAGTC+AGG	0.525607	tig0018186:+267409	None:intergenic
AAGAAGAACATAACTGTGGA+AGG	0.528366	tig0018186:+267376	None:intergenic
TCTACAGAGGTGCAAGGAAG+GGG	0.542753	tig0018186:-267252	Msa1364910:CDS
CATCCCAATCGTGACCAAAA+CGG	0.547656	tig0018186:+268252	None:intergenic
TGTCTACAGAGGTGCAAGGA+AGG	0.552161	tig0018186:-267254	Msa1364910:CDS
GTCTACAGAGGTGCAAGGAA+GGG	0.554185	tig0018186:-267253	Msa1364910:CDS
GATAAAGGGTGTACCAAATG+AGG	0.558599	tig0018186:+267104	None:intergenic
TATTGTTGTTGAATTGAAGG+TGG	0.561696	tig0018186:-268405	Msa1364910:five_prime_UTR
AAGCACATCATGATAGACCT+TGG	0.567283	tig0018186:-267346	Msa1364910:CDS
ATTCTAGTAACGGTACTTGG+TGG	0.586412	tig0018186:+267198	None:intergenic
GTTTGATTAAAAGAAATGGT+AGG	0.587843	tig0018186:-266942	Msa1364910:three_prime_UTR
TTGGGATGAGACTTGTATGC+AGG	0.595858	tig0018186:-268237	Msa1364910:intron
TCAGGCAATCCTCGCTGAGG+AGG	0.599877	tig0018186:-268291	Msa1364910:CDS
AGAGGTGCAAGGAAGGGGCG+TGG	0.611606	tig0018186:-267247	Msa1364910:CDS
GTTTAAGATGACATACAAGT+AGG	0.612858	tig0018186:+267045	None:intergenic
GCCCATCCCGAATGCAAGTG+AGG	0.615016	tig0018186:+268320	None:intergenic
CCTAATTAAGAAAAGAAAAG+GGG	0.617397	tig0018186:-268378	Msa1364910:five_prime_UTR
GATGGATGAGGTGCTGTCAT+CGG	0.623483	tig0018186:-267488	Msa1364910:CDS
GGTGTGTGTCAAGATGGATG+AGG	0.631234	tig0018186:-267500	Msa1364910:intron
AGAAGAACATAACTGTGGAA+GGG	0.633856	tig0018186:+267377	None:intergenic
GCACCTCTGTGATGTCCACA+AGG	0.642857	tig0018186:+267431	None:intergenic
TCACTTTGTCTCCACACTCG+CGG	0.651115	tig0018186:-268441	Msa1364910:five_prime_UTR
GAATGTATCAATCTACAGGA+AGG	0.651779	tig0018186:-267179	Msa1364910:three_prime_UTR
CTTTGCTGTGATATACCTTG+TGG	0.662344	tig0018186:-267446	Msa1364910:CDS
AGATTGATACATTCTAGTAA+CGG	0.666479	tig0018186:+267188	None:intergenic
CCTAAAGAAGAACATAACTG+TGG	0.685302	tig0018186:+267372	None:intergenic
TGATCAGGCAATCCTCGCTG+AGG	0.692917	tig0018186:-268294	Msa1364910:CDS
AGACTGTCTACAGAGGTGCA+AGG	0.715363	tig0018186:-267258	Msa1364910:CDS
ATCATTGAGACTGTCTACAG+AGG	0.717834	tig0018186:-267265	Msa1364910:CDS
CGAGACGTTCCTCCTCAGCG+AGG	0.755149	tig0018186:+268282	None:intergenic
ATACCTTGTGGACATCACAG+AGG	0.789529	tig0018186:-267434	Msa1364910:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTGCTTTTTTTTTTTTTTTT+TGG	-	tig0018186:267889-267908	Msa1364910:intron	10.0%
!!!	TTGCTTTTTTTTTTTTTTTT+TGG	-	tig0018186:267889-267908	Msa1364910:intron	10.0%
!!	TTATGTCCTATATATATTAT+TGG	+	tig0018186:267438-267457	None:intergenic	15.0%
!!	TTATGTCCTATATATATTAT+TGG	+	tig0018186:267438-267457	None:intergenic	15.0%
!!	AAACAGCCAATAATATATAT+AGG	-	tig0018186:267429-267448	Msa1364910:CDS	20.0%
!!	AGAGATAAAGTAATGAATTT+AGG	-	tig0018186:267459-267478	Msa1364910:CDS	20.0%
!!	GAGATAAAGTAATGAATTTA+GGG	-	tig0018186:267460-267479	Msa1364910:CDS	20.0%
!!	ATCAACCTAAAATTAAGAAT+TGG	+	tig0018186:267817-267836	None:intergenic	20.0%
!!!	TTCTTAATTTTAGGTTGATA+AGG	-	tig0018186:267818-267837	Msa1364910:intron	20.0%
!!!	TCTTAATTTTAGGTTGATAA+GGG	-	tig0018186:267819-267838	Msa1364910:intron	20.0%
!!	CATAAAACATAAATCTTTGT+TGG	+	tig0018186:268440-268459	None:intergenic	20.0%
!!	AAGTGTTTGATTAAAAGAAA+TGG	-	tig0018186:268464-268483	Msa1364910:five_prime_UTR	20.0%
!!	AAACAGCCAATAATATATAT+AGG	-	tig0018186:267429-267448	Msa1364910:CDS	20.0%
!!	AGAGATAAAGTAATGAATTT+AGG	-	tig0018186:267459-267478	Msa1364910:CDS	20.0%
!!	GAGATAAAGTAATGAATTTA+GGG	-	tig0018186:267460-267479	Msa1364910:CDS	20.0%
!!	ATCAACCTAAAATTAAGAAT+TGG	+	tig0018186:267817-267836	None:intergenic	20.0%
!!!	TTCTTAATTTTAGGTTGATA+AGG	-	tig0018186:267818-267837	Msa1364910:intron	20.0%
!!!	TCTTAATTTTAGGTTGATAA+GGG	-	tig0018186:267819-267838	Msa1364910:intron	20.0%
!!	CATAAAACATAAATCTTTGT+TGG	+	tig0018186:268440-268459	None:intergenic	20.0%
!!	AAGTGTTTGATTAAAAGAAA+TGG	-	tig0018186:268464-268483	Msa1364910:five_prime_UTR	20.0%
!!	TGTTATTGTTGTTGAATTGA+AGG	-	tig0018186:267002-267021	Msa1364910:three_prime_UTR	25.0%
!	ACCCTAATTAAGAAAAGAAA+AGG	-	tig0018186:267030-267049	Msa1364910:three_prime_UTR	25.0%
!!	CCCTTTTCTTTTCTTAATTA+GGG	+	tig0018186:267034-267053	None:intergenic	25.0%
!	CCCTAATTAAGAAAAGAAAA+GGG	-	tig0018186:267031-267050	Msa1364910:three_prime_UTR	25.0%
!	CCTAATTAAGAAAAGAAAAG+GGG	-	tig0018186:267032-267051	Msa1364910:three_prime_UTR	25.0%
!	AAATATCAAGAACTGCTTAA+TGG	-	tig0018186:267263-267282	Msa1364910:CDS	25.0%
!	ATAAAGTAATGAATTTAGGG+AGG	-	tig0018186:267463-267482	Msa1364910:CDS	25.0%
!	GCATGAAACAAATTTGAATT+TGG	+	tig0018186:267508-267527	None:intergenic	25.0%
!!	ATGCACCAATTCTTAATTTT+AGG	-	tig0018186:267809-267828	Msa1364910:intron	25.0%
!	AAACAACAACAAGATCAATT+GGG	-	tig0018186:268093-268112	Msa1364910:intron	25.0%
!	AGATTGATACATTCTAGTAA+CGG	+	tig0018186:268225-268244	None:intergenic	25.0%
!	GTTTGATTAAAAGAAATGGT+AGG	-	tig0018186:268468-268487	Msa1364910:five_prime_UTR	25.0%
!!	TGTTATTGTTGTTGAATTGA+AGG	-	tig0018186:267002-267021	Msa1364910:three_prime_UTR	25.0%
!	ACCCTAATTAAGAAAAGAAA+AGG	-	tig0018186:267030-267049	Msa1364910:three_prime_UTR	25.0%
!!	CCCTTTTCTTTTCTTAATTA+GGG	+	tig0018186:267034-267053	None:intergenic	25.0%
!	CCCTAATTAAGAAAAGAAAA+GGG	-	tig0018186:267031-267050	Msa1364910:three_prime_UTR	25.0%
!	CCTAATTAAGAAAAGAAAAG+GGG	-	tig0018186:267032-267051	Msa1364910:three_prime_UTR	25.0%
!	AAATATCAAGAACTGCTTAA+TGG	-	tig0018186:267263-267282	Msa1364910:CDS	25.0%
!	ATAAAGTAATGAATTTAGGG+AGG	-	tig0018186:267463-267482	Msa1364910:CDS	25.0%
!	GCATGAAACAAATTTGAATT+TGG	+	tig0018186:267508-267527	None:intergenic	25.0%
!!	ATGCACCAATTCTTAATTTT+AGG	-	tig0018186:267809-267828	Msa1364910:intron	25.0%
!	AAACAACAACAAGATCAATT+GGG	-	tig0018186:268093-268112	Msa1364910:intron	25.0%
!	AGATTGATACATTCTAGTAA+CGG	+	tig0018186:268225-268244	None:intergenic	25.0%
!	GTTTGATTAAAAGAAATGGT+AGG	-	tig0018186:268468-268487	Msa1364910:five_prime_UTR	25.0%
!	TATTGTTGTTGAATTGAAGG+TGG	-	tig0018186:267005-267024	Msa1364910:three_prime_UTR	30.0%
!	CCCCTTTTCTTTTCTTAATT+AGG	+	tig0018186:267035-267054	None:intergenic	30.0%
	GATGACAAAACTGCTTAATT+TGG	-	tig0018186:267292-267311	Msa1364910:CDS	30.0%
	TGATGTATTTACAGAGAAAC+AGG	+	tig0018186:267602-267621	None:intergenic	30.0%
!	CCATGAAATTGTTATTGTGA+TGG	+	tig0018186:267712-267731	None:intergenic	30.0%
	CCATCACAATAACAATTTCA+TGG	-	tig0018186:267709-267728	Msa1364910:intron	30.0%
	TGAGCGAAACTTGATTAATT+AGG	-	tig0018186:267848-267867	Msa1364910:intron	30.0%
	TCATACATAGTGTTAAAGTC+AGG	+	tig0018186:268004-268023	None:intergenic	30.0%
	GAAACAACAACAAGATCAAT+TGG	-	tig0018186:268092-268111	Msa1364910:intron	30.0%
	ACTAGAATGTATCAATCTAC+AGG	-	tig0018186:268227-268246	Msa1364910:intron	30.0%
	ACAGTTACACACTTGATAAA+GGG	+	tig0018186:268323-268342	None:intergenic	30.0%
!	GTTTAAGATGACATACAAGT+AGG	+	tig0018186:268368-268387	None:intergenic	30.0%
	ACATAATCCAAGTACATGTT+GGG	+	tig0018186:268415-268434	None:intergenic	30.0%
!	TATTGTTGTTGAATTGAAGG+TGG	-	tig0018186:267005-267024	Msa1364910:three_prime_UTR	30.0%
!	CCCCTTTTCTTTTCTTAATT+AGG	+	tig0018186:267035-267054	None:intergenic	30.0%
	GATGACAAAACTGCTTAATT+TGG	-	tig0018186:267292-267311	Msa1364910:CDS	30.0%
	TGATGTATTTACAGAGAAAC+AGG	+	tig0018186:267602-267621	None:intergenic	30.0%
!	CCATGAAATTGTTATTGTGA+TGG	+	tig0018186:267712-267731	None:intergenic	30.0%
	CCATCACAATAACAATTTCA+TGG	-	tig0018186:267709-267728	Msa1364910:intron	30.0%
	TGAGCGAAACTTGATTAATT+AGG	-	tig0018186:267848-267867	Msa1364910:intron	30.0%
	TCATACATAGTGTTAAAGTC+AGG	+	tig0018186:268004-268023	None:intergenic	30.0%
	GAAACAACAACAAGATCAAT+TGG	-	tig0018186:268092-268111	Msa1364910:intron	30.0%
	ACTAGAATGTATCAATCTAC+AGG	-	tig0018186:268227-268246	Msa1364910:intron	30.0%
	ACAGTTACACACTTGATAAA+GGG	+	tig0018186:268323-268342	None:intergenic	30.0%
!	GTTTAAGATGACATACAAGT+AGG	+	tig0018186:268368-268387	None:intergenic	30.0%
	ACATAATCCAAGTACATGTT+GGG	+	tig0018186:268415-268434	None:intergenic	30.0%
	TATCAAGAACTGCTTAATGG+AGG	-	tig0018186:267266-267285	Msa1364910:CDS	35.0%
	AAGTAATGAATTTAGGGAGG+TGG	-	tig0018186:267466-267485	Msa1364910:CDS	35.0%
	GAACTATATTGGGGAAATAC+TGG	+	tig0018186:267556-267575	None:intergenic	35.0%
	TGAGAAGCAGGAACTATATT+GGG	+	tig0018186:267566-267585	None:intergenic	35.0%
	TTGAGAAGCAGGAACTATAT+TGG	+	tig0018186:267567-267586	None:intergenic	35.0%
	TTCAGAAAAAGTTGAGAAGC+AGG	+	tig0018186:267578-267597	None:intergenic	35.0%
	TATCATAATACCAATCGCAG+TGG	+	tig0018186:267760-267779	None:intergenic	35.0%
!!!	TTTTTTGGTGTGTGTCAAGA+TGG	-	tig0018186:267904-267923	Msa1364910:intron	35.0%
	AGAAGAACATAACTGTGGAA+GGG	+	tig0018186:268036-268055	None:intergenic	35.0%
	AAGAAGAACATAACTGTGGA+AGG	+	tig0018186:268037-268056	None:intergenic	35.0%
	CCTAAAGAAGAACATAACTG+TGG	+	tig0018186:268041-268060	None:intergenic	35.0%
	CCACAGTTATGTTCTTCTTT+AGG	-	tig0018186:268038-268057	Msa1364910:intron	35.0%
!	TACTTGGTGGAGTAATCTTT+GGG	+	tig0018186:268202-268221	None:intergenic	35.0%
	TACATTCTAGTAACGGTACT+TGG	+	tig0018186:268218-268237	None:intergenic	35.0%
	GAATGTATCAATCTACAGGA+AGG	-	tig0018186:268231-268250	Msa1364910:intron	35.0%
	TGTCCAAAATCTACCTCATT+TGG	-	tig0018186:268293-268312	Msa1364910:CDS	35.0%
!	GTACCAAATGAGGTAGATTT+TGG	+	tig0018186:268299-268318	None:intergenic	35.0%
	GACAGTTACACACTTGATAA+AGG	+	tig0018186:268324-268343	None:intergenic	35.0%
	CACATAATCCAAGTACATGT+TGG	+	tig0018186:268416-268435	None:intergenic	35.0%
	TATCAAGAACTGCTTAATGG+AGG	-	tig0018186:267266-267285	Msa1364910:CDS	35.0%
	AAGTAATGAATTTAGGGAGG+TGG	-	tig0018186:267466-267485	Msa1364910:CDS	35.0%
	GAACTATATTGGGGAAATAC+TGG	+	tig0018186:267556-267575	None:intergenic	35.0%
	TGAGAAGCAGGAACTATATT+GGG	+	tig0018186:267566-267585	None:intergenic	35.0%
	TTGAGAAGCAGGAACTATAT+TGG	+	tig0018186:267567-267586	None:intergenic	35.0%
	TTCAGAAAAAGTTGAGAAGC+AGG	+	tig0018186:267578-267597	None:intergenic	35.0%
	TATCATAATACCAATCGCAG+TGG	+	tig0018186:267760-267779	None:intergenic	35.0%
!!!	TTTTTTGGTGTGTGTCAAGA+TGG	-	tig0018186:267904-267923	Msa1364910:intron	35.0%
	AGAAGAACATAACTGTGGAA+GGG	+	tig0018186:268036-268055	None:intergenic	35.0%
	AAGAAGAACATAACTGTGGA+AGG	+	tig0018186:268037-268056	None:intergenic	35.0%
	CCTAAAGAAGAACATAACTG+TGG	+	tig0018186:268041-268060	None:intergenic	35.0%
	CCACAGTTATGTTCTTCTTT+AGG	-	tig0018186:268038-268057	Msa1364910:intron	35.0%
!	TACTTGGTGGAGTAATCTTT+GGG	+	tig0018186:268202-268221	None:intergenic	35.0%
	TACATTCTAGTAACGGTACT+TGG	+	tig0018186:268218-268237	None:intergenic	35.0%
	GAATGTATCAATCTACAGGA+AGG	-	tig0018186:268231-268250	Msa1364910:intron	35.0%
	TGTCCAAAATCTACCTCATT+TGG	-	tig0018186:268293-268312	Msa1364910:CDS	35.0%
!	GTACCAAATGAGGTAGATTT+TGG	+	tig0018186:268299-268318	None:intergenic	35.0%
	GACAGTTACACACTTGATAA+AGG	+	tig0018186:268324-268343	None:intergenic	35.0%
	CACATAATCCAAGTACATGT+TGG	+	tig0018186:268416-268435	None:intergenic	35.0%
	GTGTGGAGACAAAGTGAAAA+AGG	+	tig0018186:266966-266985	None:intergenic	40.0%
	GAGAAGCAGGAACTATATTG+GGG	+	tig0018186:267565-267584	None:intergenic	40.0%
!	CTTTGCTGTGATATACCTTG+TGG	-	tig0018186:267964-267983	Msa1364910:intron	40.0%
	AAGCACATCATGATAGACCT+TGG	-	tig0018186:268064-268083	Msa1364910:intron	40.0%
	ATCATGATAGACCTTGGAAC+TGG	-	tig0018186:268070-268089	Msa1364910:intron	40.0%
!!	TGTTGTTGTTTCCAGTTCCA+AGG	+	tig0018186:268084-268103	None:intergenic	40.0%
	CAAGATCAATTGGGCTATGA+AGG	-	tig0018186:268102-268121	Msa1364910:intron	40.0%
	ATCATTGAGACTGTCTACAG+AGG	-	tig0018186:268145-268164	Msa1364910:intron	40.0%
!	GTACTTGGTGGAGTAATCTT+TGG	+	tig0018186:268203-268222	None:intergenic	40.0%
	ATTCTAGTAACGGTACTTGG+TGG	+	tig0018186:268215-268234	None:intergenic	40.0%
!	GATAAAGGGTGTACCAAATG+AGG	+	tig0018186:268309-268328	None:intergenic	40.0%
	GTGTGGAGACAAAGTGAAAA+AGG	+	tig0018186:266966-266985	None:intergenic	40.0%
	GAGAAGCAGGAACTATATTG+GGG	+	tig0018186:267565-267584	None:intergenic	40.0%
!	CTTTGCTGTGATATACCTTG+TGG	-	tig0018186:267964-267983	Msa1364910:intron	40.0%
	AAGCACATCATGATAGACCT+TGG	-	tig0018186:268064-268083	Msa1364910:intron	40.0%
	ATCATGATAGACCTTGGAAC+TGG	-	tig0018186:268070-268089	Msa1364910:intron	40.0%
!!	TGTTGTTGTTTCCAGTTCCA+AGG	+	tig0018186:268084-268103	None:intergenic	40.0%
	CAAGATCAATTGGGCTATGA+AGG	-	tig0018186:268102-268121	Msa1364910:intron	40.0%
	ATCATTGAGACTGTCTACAG+AGG	-	tig0018186:268145-268164	Msa1364910:intron	40.0%
!	GTACTTGGTGGAGTAATCTT+TGG	+	tig0018186:268203-268222	None:intergenic	40.0%
	ATTCTAGTAACGGTACTTGG+TGG	+	tig0018186:268215-268234	None:intergenic	40.0%
!	GATAAAGGGTGTACCAAATG+AGG	+	tig0018186:268309-268328	None:intergenic	40.0%
!!	TCATCCGTTTTGGTCACGAT+TGG	-	tig0018186:267154-267173	Msa1364910:three_prime_UTR	45.0%
!!	CATCCGTTTTGGTCACGATT+GGG	-	tig0018186:267155-267174	Msa1364910:three_prime_UTR	45.0%
	CATCCCAATCGTGACCAAAA+CGG	+	tig0018186:267161-267180	None:intergenic	45.0%
	TTGGGATGAGACTTGTATGC+AGG	-	tig0018186:267173-267192	Msa1364910:three_prime_UTR	45.0%
	ATACCTTGTGGACATCACAG+AGG	-	tig0018186:267976-267995	Msa1364910:intron	45.0%
	TTGGGCTATGAAGGACAAAC+AGG	-	tig0018186:268111-268130	Msa1364910:intron	45.0%
	GTGTATGCCCAACATGTACT+TGG	-	tig0018186:268405-268424	Msa1364910:five_prime_UTR	45.0%
!!	TCATCCGTTTTGGTCACGAT+TGG	-	tig0018186:267154-267173	Msa1364910:three_prime_UTR	45.0%
!!	CATCCGTTTTGGTCACGATT+GGG	-	tig0018186:267155-267174	Msa1364910:three_prime_UTR	45.0%
	CATCCCAATCGTGACCAAAA+CGG	+	tig0018186:267161-267180	None:intergenic	45.0%
	TTGGGATGAGACTTGTATGC+AGG	-	tig0018186:267173-267192	Msa1364910:three_prime_UTR	45.0%
	ATACCTTGTGGACATCACAG+AGG	-	tig0018186:267976-267995	Msa1364910:intron	45.0%
	TTGGGCTATGAAGGACAAAC+AGG	-	tig0018186:268111-268130	Msa1364910:intron	45.0%
	GTGTATGCCCAACATGTACT+TGG	-	tig0018186:268405-268424	Msa1364910:five_prime_UTR	45.0%
	TCACTTTGTCTCCACACTCG+CGG	-	tig0018186:266969-266988	Msa1364910:three_prime_UTR	50.0%
	ATAACATAACGCCGCGAGTG+TGG	+	tig0018186:266983-267002	None:intergenic	50.0%
	CATGCTGCCTCACTTGCATT+CGG	-	tig0018186:267083-267102	Msa1364910:three_prime_UTR	50.0%
	ATGCTGCCTCACTTGCATTC+GGG	-	tig0018186:267084-267103	Msa1364910:three_prime_UTR	50.0%
!	CGTCTCGTTGTCATCCGTTT+TGG	-	tig0018186:267144-267163	Msa1364910:three_prime_UTR	50.0%
	GGTGTGTGTCAAGATGGATG+AGG	-	tig0018186:267910-267929	Msa1364910:intron	50.0%
!!	GATGGATGAGGTGCTGTCAT+CGG	-	tig0018186:267922-267941	Msa1364910:intron	50.0%
!	AGACTGTCTACAGAGGTGCA+AGG	-	tig0018186:268152-268171	Msa1364910:intron	50.0%
!	TGTCTACAGAGGTGCAAGGA+AGG	-	tig0018186:268156-268175	Msa1364910:intron	50.0%
!	GTCTACAGAGGTGCAAGGAA+GGG	-	tig0018186:268157-268176	Msa1364910:intron	50.0%
!	TCTACAGAGGTGCAAGGAAG+GGG	-	tig0018186:268158-268177	Msa1364910:intron	50.0%
	TCACTTTGTCTCCACACTCG+CGG	-	tig0018186:266969-266988	Msa1364910:three_prime_UTR	50.0%
	ATAACATAACGCCGCGAGTG+TGG	+	tig0018186:266983-267002	None:intergenic	50.0%
	CATGCTGCCTCACTTGCATT+CGG	-	tig0018186:267083-267102	Msa1364910:three_prime_UTR	50.0%
	ATGCTGCCTCACTTGCATTC+GGG	-	tig0018186:267084-267103	Msa1364910:three_prime_UTR	50.0%
!	CGTCTCGTTGTCATCCGTTT+TGG	-	tig0018186:267144-267163	Msa1364910:three_prime_UTR	50.0%
	GGTGTGTGTCAAGATGGATG+AGG	-	tig0018186:267910-267929	Msa1364910:intron	50.0%
!!	GATGGATGAGGTGCTGTCAT+CGG	-	tig0018186:267922-267941	Msa1364910:intron	50.0%
!	AGACTGTCTACAGAGGTGCA+AGG	-	tig0018186:268152-268171	Msa1364910:intron	50.0%
!	TGTCTACAGAGGTGCAAGGA+AGG	-	tig0018186:268156-268175	Msa1364910:intron	50.0%
!	GTCTACAGAGGTGCAAGGAA+GGG	-	tig0018186:268157-268176	Msa1364910:intron	50.0%
!	TCTACAGAGGTGCAAGGAAG+GGG	-	tig0018186:268158-268177	Msa1364910:intron	50.0%
	TGCCTCACTTGCATTCGGGA+TGG	-	tig0018186:267088-267107	Msa1364910:three_prime_UTR	55.0%
	GCCTCACTTGCATTCGGGAT+GGG	-	tig0018186:267089-267108	Msa1364910:three_prime_UTR	55.0%
!!	TTCGGGATGGGCTGTTGATC+AGG	-	tig0018186:267101-267120	Msa1364910:three_prime_UTR	55.0%
	TGATCAGGCAATCCTCGCTG+AGG	-	tig0018186:267116-267135	Msa1364910:three_prime_UTR	55.0%
	ACCACGAACACCACTGCGAT+TGG	-	tig0018186:267747-267766	Msa1364910:intron	55.0%
	ACCAATCGCAGTGGTGTTCG+TGG	+	tig0018186:267751-267770	None:intergenic	55.0%
	GCACCTCTGTGATGTCCACA+AGG	+	tig0018186:267982-268001	None:intergenic	55.0%
	TGCCTCACTTGCATTCGGGA+TGG	-	tig0018186:267088-267107	Msa1364910:three_prime_UTR	55.0%
	GCCTCACTTGCATTCGGGAT+GGG	-	tig0018186:267089-267108	Msa1364910:three_prime_UTR	55.0%
!!	TTCGGGATGGGCTGTTGATC+AGG	-	tig0018186:267101-267120	Msa1364910:three_prime_UTR	55.0%
	TGATCAGGCAATCCTCGCTG+AGG	-	tig0018186:267116-267135	Msa1364910:three_prime_UTR	55.0%
	ACCACGAACACCACTGCGAT+TGG	-	tig0018186:267747-267766	Msa1364910:intron	55.0%
	ACCAATCGCAGTGGTGTTCG+TGG	+	tig0018186:267751-267770	None:intergenic	55.0%
	GCACCTCTGTGATGTCCACA+AGG	+	tig0018186:267982-268001	None:intergenic	55.0%
	GCCCATCCCGAATGCAAGTG+AGG	+	tig0018186:267093-267112	None:intergenic	60.0%
	TCAGGCAATCCTCGCTGAGG+AGG	-	tig0018186:267119-267138	Msa1364910:three_prime_UTR	60.0%
	GCCCATCCCGAATGCAAGTG+AGG	+	tig0018186:267093-267112	None:intergenic	60.0%
	TCAGGCAATCCTCGCTGAGG+AGG	-	tig0018186:267119-267138	Msa1364910:three_prime_UTR	60.0%
	CGAGACGTTCCTCCTCAGCG+AGG	+	tig0018186:267131-267150	None:intergenic	65.0%
!	AGAGGTGCAAGGAAGGGGCG+TGG	-	tig0018186:268163-268182	Msa1364910:intron	65.0%
	CGAGACGTTCCTCCTCAGCG+AGG	+	tig0018186:267131-267150	None:intergenic	65.0%
!	AGAGGTGCAAGGAAGGGGCG+TGG	-	tig0018186:268163-268182	Msa1364910:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0018186	gene	266931	268501	266931	ID=Msa1364910;Name=Msa1364910
tig0018186	mRNA	266931	268501	266931	ID=Msa1364910-mRNA-1;Parent=Msa1364910;Name=Msa1364910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=144\|1\|1\|1\|1\|1\|2\|270\|142
tig0018186	exon	266931	267509	266931	ID=Msa1364910-mRNA-1:exon:14257;Parent=Msa1364910-mRNA-1
tig0018186	exon	268238	268501	268238	ID=Msa1364910-mRNA-1:exon:14256;Parent=Msa1364910-mRNA-1
tig0018186	five_prime_UTR	268358	268501	268358	ID=Msa1364910-mRNA-1:five_prime_utr;Parent=Msa1364910-mRNA-1
tig0018186	CDS	268238	268357	268238	ID=Msa1364910-mRNA-1:cds;Parent=Msa1364910-mRNA-1
tig0018186	CDS	267201	267509	267201	ID=Msa1364910-mRNA-1:cds;Parent=Msa1364910-mRNA-1
tig0018186	three_prime_UTR	266931	267200	266931	ID=Msa1364910-mRNA-1:three_prime_utr;Parent=Msa1364910-mRNA-1

Gene Sequence

>Msa1364910

ATGTCGTACATGCTGCCTCACTTGCATTCGGGATGGGCTGTTGATCAGGCAATCCTCGCTGAGGAGGAACGTCTCGTTGTCATCCGTTTTGGTCACGATTGGGATGAGACTTGTATGCAGATGGATGAGGTGCTGTCATCGGTTGCAGAGACAATAAAGAACTTTGCTGTGATATACCTTGTGGACATCACAGAGGTGCCTGACTTTAACACTATGTATGAGCTGTATGACCCTTCCACAGTTATGTTCTTCTTTAGGAACAAGCACATCATGATAGACCTTGGAACTGGAAACAACAACAAGATCAATTGGGCTATGAAGGACAAACAGGAGTTCATTGACATCATTGAGACTGTCTACAGAGGTGCAAGGAAGGGGCGTGGTCTTGTCATTGCTCCCAAAGATTACTCCACCAAGTACCGTTACTAG

Protein sequence

>Msa1364910

MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY*