Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717670 | AES95242.1 | 97.087 | 309 | 9 | 0 | 1 | 309 | 1 | 309 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717670 | A0A396HPH4 | 97.087 | 309 | 9 | 0 | 1 | 309 | 7 | 315 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0717670 | 0.825934 | 3.575496e-54 | -8.615850e-47 |
| Msa0022640 | Msa0717670 | 0.808054 | 3.739372e-50 | -8.615850e-47 |
| Msa0057240 | Msa0717670 | 0.816464 | 5.457562e-52 | -8.615850e-47 |
| Msa0118400 | Msa0717670 | 0.806495 | 7.999587e-50 | -8.615850e-47 |
| Msa0619980 | Msa0717670 | 0.802095 | 6.601360e-49 | -8.615850e-47 |
| Msa0621890 | Msa0717670 | 0.810075 | 1.380618e-50 | -8.615850e-47 |
| Msa0648540 | Msa0717670 | 0.800083 | 1.702071e-48 | -8.615850e-47 |
| Msa0649970 | Msa0717670 | 0.805727 | 1.161168e-49 | -8.615850e-47 |
| Msa0682530 | Msa0717670 | 0.824547 | 7.608684e-54 | -8.615850e-47 |
| Msa0706370 | Msa0717670 | 0.816448 | 5.501769e-52 | -8.615850e-47 |
| Msa0717670 | Msa0773610 | 0.801811 | 7.550657e-49 | -8.615850e-47 |
| Msa0717670 | Msa0815320 | 0.827149 | 1.835123e-54 | -8.615850e-47 |
| Msa0717670 | Msa0870620 | 0.822893 | 1.856358e-53 | -8.615850e-47 |
| Msa0717670 | Msa0870690 | 0.802108 | 6.560993e-49 | -8.615850e-47 |
| Msa0717670 | Msa0880710 | 0.824829 | 6.528788e-54 | -8.615850e-47 |
| Msa0717670 | Msa0885060 | 0.838364 | 3.004418e-57 | -8.615850e-47 |
| Msa0717670 | Msa0988480 | 0.804916 | 1.716817e-49 | -8.615850e-47 |
| Msa0717670 | Msa1020720 | 0.810808 | 9.588416e-51 | -8.615850e-47 |
| Msa0717670 | Msa1069300 | 0.808307 | 3.303617e-50 | -8.615850e-47 |
| Msa0717670 | Msa1172590 | 0.804514 | 2.082776e-49 | -8.615850e-47 |
| Msa0717670 | Msa1218480 | 0.817325 | 3.496106e-52 | -8.615850e-47 |
| Msa0717670 | Msa1420060 | 0.807184 | 5.720545e-50 | -8.615850e-47 |
| Msa0717670 | Msa1423990 | 0.804748 | 1.861193e-49 | -8.615850e-47 |
| Msa0717670 | Msa1424690 | 0.820435 | 6.868156e-53 | -8.615850e-47 |
| Msa0717670 | Msa1429420 | 0.822316 | 2.528273e-53 | -8.615850e-47 |
| Msa0717670 | Msa1440340 | 0.826225 | 3.048284e-54 | -8.615850e-47 |
| Msa0717670 | Msa1453710 | 0.805020 | 1.633294e-49 | -8.615850e-47 |
| Msa0149560 | Msa0717670 | 0.820630 | 6.195853e-53 | -8.615850e-47 |
| Msa0153420 | Msa0717670 | 0.804161 | 2.466577e-49 | -8.615850e-47 |
| Msa0161680 | Msa0717670 | 0.809017 | 2.328671e-50 | -8.615850e-47 |
| Msa0173990 | Msa0717670 | 0.800375 | 1.484575e-48 | -8.615850e-47 |
| Msa0191040 | Msa0717670 | 0.833003 | 6.844841e-56 | -8.615850e-47 |
| Msa0220300 | Msa0717670 | 0.811863 | 5.659951e-51 | -8.615850e-47 |
| Msa0221090 | Msa0717670 | 0.819481 | 1.135327e-52 | -8.615850e-47 |
| Msa0233340 | Msa0717670 | 0.833328 | 5.680581e-56 | -8.615850e-47 |
| Msa0235890 | Msa0717670 | 0.807559 | 4.765334e-50 | -8.615850e-47 |
| Msa0436500 | Msa0717670 | 0.821574 | 3.756290e-53 | -8.615850e-47 |
| Msa0251240 | Msa0717670 | 0.810849 | 9.394834e-51 | -8.615850e-47 |
| Msa0288200 | Msa0717670 | 0.840581 | 7.978868e-58 | -8.615850e-47 |
| Msa0311690 | Msa0717670 | 0.840647 | 7.666183e-58 | -8.615850e-47 |
| Msa0315250 | Msa0717670 | 0.804511 | 2.086234e-49 | -8.615850e-47 |
| Msa0322830 | Msa0717670 | 0.803132 | 4.034044e-49 | -8.615850e-47 |
| Msa0352000 | Msa0717670 | 0.811957 | 5.397502e-51 | -8.615850e-47 |
| Msa0352010 | Msa0717670 | 0.828194 | 1.029313e-54 | -8.615850e-47 |
| Msa0503540 | Msa0717670 | 0.800491 | 1.406130e-48 | -8.615850e-47 |
| Msa0534590 | Msa0717670 | 0.802394 | 5.727922e-49 | -8.615850e-47 |
| Msa0590800 | Msa0717670 | 0.812442 | 4.230175e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717670 | MtrunA17_Chr5g0406361 | 97.087 | 309 | 9 | 0 | 1 | 309 | 7 | 315 | 0.0 | 612 |
| Msa0717670 | MtrunA17_Chr8g0370921 | 63.782 | 312 | 97 | 6 | 1 | 309 | 7 | 305 | 1.79e-134 | 383 |
| Msa0717670 | MtrunA17_Chr8g0370901 | 42.617 | 298 | 157 | 4 | 11 | 308 | 4 | 287 | 3.07e-73 | 227 |
| Msa0717670 | MtrunA17_Chr8g0370891 | 43.144 | 299 | 158 | 4 | 10 | 308 | 3 | 289 | 4.28e-73 | 227 |
| Msa0717670 | MtrunA17_Chr8g0370881 | 42.667 | 300 | 160 | 4 | 9 | 308 | 2 | 289 | 1.66e-68 | 215 |
| Msa0717670 | MtrunA17_Chr5g0406401 | 39.667 | 300 | 163 | 5 | 9 | 308 | 3 | 284 | 7.73e-59 | 190 |
| Msa0717670 | MtrunA17_Chr5g0406501 | 38.667 | 300 | 167 | 5 | 9 | 308 | 2 | 284 | 6.00e-58 | 187 |
| Msa0717670 | MtrunA17_Chr5g0406531 | 39.000 | 300 | 165 | 6 | 9 | 308 | 2 | 283 | 2.44e-57 | 186 |
| Msa0717670 | MtrunA17_Chr5g0406411 | 39.667 | 300 | 163 | 6 | 9 | 308 | 3 | 284 | 1.00e-56 | 184 |
| Msa0717670 | MtrunA17_Chr5g0406561 | 38.667 | 300 | 170 | 5 | 9 | 308 | 3 | 288 | 1.05e-56 | 184 |
| Msa0717670 | MtrunA17_Chr5g0406391 | 39.000 | 300 | 165 | 6 | 9 | 308 | 3 | 284 | 2.11e-56 | 184 |
| Msa0717670 | MtrunA17_Chr5g0406421 | 38.333 | 300 | 167 | 5 | 9 | 308 | 3 | 284 | 2.91e-56 | 183 |
| Msa0717670 | MtrunA17_Chr5g0406371 | 39.535 | 301 | 160 | 6 | 9 | 308 | 3 | 282 | 1.14e-55 | 182 |
| Msa0717670 | MtrunA17_Chr5g0406601 | 37.667 | 300 | 169 | 4 | 9 | 308 | 3 | 284 | 1.40e-55 | 182 |
| Msa0717670 | MtrunA17_Chr5g0406511 | 37.542 | 301 | 169 | 7 | 9 | 308 | 3 | 285 | 2.59e-54 | 178 |
| Msa0717670 | MtrunA17_Chr5g0406481 | 37.209 | 301 | 170 | 7 | 9 | 308 | 3 | 285 | 3.57e-54 | 178 |
| Msa0717670 | MtrunA17_Chr5g0406631 | 33.762 | 311 | 196 | 7 | 1 | 308 | 1 | 304 | 8.29e-45 | 154 |
| Msa0717670 | MtrunA17_Chr4g0035251 | 32.459 | 305 | 187 | 8 | 9 | 308 | 12 | 302 | 1.69e-41 | 145 |
| Msa0717670 | MtrunA17_Chr8g0370861 | 31.329 | 316 | 175 | 6 | 1 | 308 | 1 | 282 | 1.74e-38 | 137 |
| Msa0717670 | MtrunA17_Chr4g0035261 | 31.894 | 301 | 196 | 4 | 8 | 308 | 9 | 300 | 2.84e-37 | 134 |
| Msa0717670 | MtrunA17_Chr4g0035221 | 30.519 | 308 | 201 | 4 | 1 | 308 | 1 | 295 | 7.85e-35 | 128 |
| Msa0717670 | MtrunA17_Chr3g0144781 | 27.974 | 311 | 205 | 7 | 1 | 308 | 1 | 295 | 1.13e-31 | 119 |
| Msa0717670 | MtrunA17_Chr5g0406471 | 35.500 | 200 | 111 | 3 | 110 | 309 | 4 | 185 | 2.17e-31 | 115 |
| Msa0717670 | MtrunA17_Chr4g0035231 | 30.293 | 307 | 199 | 6 | 1 | 306 | 1 | 293 | 2.11e-30 | 116 |
| Msa0717670 | MtrunA17_Chr3g0144751 | 29.487 | 312 | 201 | 8 | 1 | 308 | 1 | 297 | 2.42e-30 | 116 |
| Msa0717670 | MtrunA17_Chr1g0164671 | 30.126 | 239 | 135 | 2 | 71 | 308 | 18 | 225 | 2.74e-28 | 108 |
| Msa0717670 | MtrunA17_Chr3g0143741 | 28.889 | 315 | 194 | 8 | 5 | 308 | 20 | 315 | 2.29e-21 | 92.4 |
| Msa0717670 | MtrunA17_Chr5g0406441 | 43.810 | 105 | 55 | 1 | 9 | 113 | 2 | 102 | 2.67e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717670 | AT4G35690.1 | 32.333 | 300 | 172 | 7 | 14 | 308 | 10 | 283 | 2.14e-41 | 145 |
| Msa0717670 | AT4G35720.1 | 34.441 | 331 | 185 | 13 | 1 | 308 | 3 | 324 | 3.84e-38 | 138 |
| Msa0717670 | AT2G17680.1 | 32.468 | 308 | 171 | 9 | 14 | 309 | 10 | 292 | 3.70e-35 | 129 |
| Msa0717670 | AT4G35710.1 | 31.410 | 312 | 180 | 10 | 1 | 308 | 1 | 282 | 1.84e-29 | 114 |
| Msa0717670 | AT2G17080.1 | 31.757 | 296 | 163 | 10 | 12 | 307 | 5 | 261 | 2.30e-27 | 107 |
| Msa0717670 | AT4G35210.1 | 28.136 | 295 | 163 | 10 | 12 | 306 | 5 | 250 | 2.16e-23 | 97.1 |
| Msa0717670 | AT2G17070.1 | 29.932 | 294 | 167 | 11 | 12 | 305 | 5 | 259 | 1.33e-22 | 95.1 |
| Msa0717670 | AT4G35680.1 | 30.380 | 316 | 187 | 11 | 8 | 308 | 12 | 309 | 2.59e-22 | 95.1 |
| Msa0717670 | AT4G35200.1 | 28.475 | 295 | 165 | 12 | 12 | 306 | 5 | 253 | 2.34e-19 | 85.9 |
| Msa0717670 | AT4G35660.1 | 28.165 | 316 | 160 | 8 | 15 | 308 | 17 | 287 | 1.09e-18 | 84.7 |
| Msa0717670 | AT1G76240.1 | 24.138 | 319 | 196 | 8 | 5 | 308 | 20 | 307 | 1.65e-14 | 73.2 |
| Msa0717670 | AT1G76210.1 | 24.242 | 231 | 144 | 5 | 78 | 308 | 26 | 225 | 2.43e-13 | 68.6 |
| Msa0717670 | AT3G51400.1 | 25.000 | 304 | 193 | 9 | 9 | 308 | 2 | 274 | 1.24e-12 | 67.4 |
Find 42 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATTGAAGGGTTTGAAAA+TGG | 0.213707 | 5_1:-11568269 | Msa0717670:CDS |
| GCACTTAGAAGGAGAAAATT+TGG | 0.218698 | 5_1:-11568737 | Msa0717670:CDS |
| TTAACCTTAGACTTGAAAAT+TGG | 0.243682 | 5_1:+11568488 | None:intergenic |
| TTTGGCACTTTGTAGATTAA+TGG | 0.257442 | 5_1:-11568372 | Msa0717670:CDS |
| GTTAGATTCTTAGACATATT+AGG | 0.283644 | 5_1:-11568815 | Msa0717670:CDS |
| AAGCAAATAGATGAATCATT+TGG | 0.307037 | 5_1:-11568626 | Msa0717670:CDS |
| AGCAAATAGATGAATCATTT+GGG | 0.309425 | 5_1:-11568625 | Msa0717670:CDS |
| TCTCTCACAAATATGAGAAA+TGG | 0.316729 | 5_1:-11568862 | Msa0717670:CDS |
| AAAGTTATGTATCTTCATAT+TGG | 0.328884 | 5_1:-11568700 | Msa0717670:CDS |
| CCATAACGAGAAGATTTCTT+TGG | 0.331776 | 5_1:+11569094 | None:intergenic |
| AAAGTTGAAACAATTTGCTT+TGG | 0.349774 | 5_1:-11568959 | Msa0717670:CDS |
| AAGACACACGAGTATTAATA+AGG | 0.373273 | 5_1:+11568225 | None:intergenic |
| CTTAATATTCTTTCTCCCTA+AGG | 0.376039 | 5_1:-11568200 | None:intergenic |
| CCAAAGAAATCTTCTCGTTA+TGG | 0.384482 | 5_1:-11569094 | Msa0717670:CDS |
| TCTTGAATTCTAATTGTGCT+TGG | 0.396338 | 5_1:+11569037 | None:intergenic |
| AATATGTCTAAGAATCTAAC+CGG | 0.411676 | 5_1:+11568818 | None:intergenic |
| AACTTCAATCAGCACTTAGA+AGG | 0.424738 | 5_1:-11568748 | Msa0717670:CDS |
| CTCTCACAAATATGAGAAAT+GGG | 0.430583 | 5_1:-11568861 | Msa0717670:CDS |
| TGAAGGGTTTGAAAATGGAT+TGG | 0.432328 | 5_1:-11568264 | Msa0717670:CDS |
| GTGAGAGAATAATGCTTGTT+GGG | 0.459172 | 5_1:+11568877 | None:intergenic |
| ATGTGTTGATTAACATCTAA+AGG | 0.478681 | 5_1:+11568593 | None:intergenic |
| TGTGAGAGAATAATGCTTGT+TGG | 0.483790 | 5_1:+11568876 | None:intergenic |
| GTGCTTGGATGTGATCTTGT+TGG | 0.485813 | 5_1:+11569052 | None:intergenic |
| GAGAAGATTTCTTTGGTGAG+AGG | 0.491266 | 5_1:+11569101 | None:intergenic |
| GCTATTGTGGTTGTCATTGA+AGG | 0.492708 | 5_1:-11568281 | Msa0717670:CDS |
| AAACAAGTTTAAATCATATG+AGG | 0.499043 | 5_1:-11569008 | Msa0717670:CDS |
| GACGTTATTATGTTGATGAA+AGG | 0.504212 | 5_1:-11568782 | Msa0717670:CDS |
| TAAAGAGATTGAAGCTATTG+TGG | 0.525276 | 5_1:-11568294 | Msa0717670:CDS |
| TGTAAACGTTTACAAGTGCA+TGG | 0.534509 | 5_1:-11568924 | Msa0717670:CDS |
| CTATTGTGGTTGTCATTGAA+GGG | 0.535692 | 5_1:-11568280 | Msa0717670:CDS |
| TGATGAGTTAGTAGAATGCC+CGG | 0.553220 | 5_1:-11568837 | Msa0717670:CDS |
| AGAAGATTTCTTTGGTGAGA+GGG | 0.557411 | 5_1:+11569102 | None:intergenic |
| GGTTATTGATAACACAAGCA+TGG | 0.560612 | 5_1:-11568351 | Msa0717670:CDS |
| AAGCACAATTAGAATTCAAG+AGG | 0.576419 | 5_1:-11569035 | Msa0717670:CDS |
| GTTTGATTGCAATTATCAAG+AGG | 0.581778 | 5_1:-11568423 | Msa0717670:CDS |
| TTGTTTCAAGAGTACTCATG+AGG | 0.606260 | 5_1:-11568454 | Msa0717670:CDS |
| TCAAGTCTAAGGTTAACAAG+TGG | 0.614302 | 5_1:-11568481 | Msa0717670:CDS |
| GCAAATAGATGAATCATTTG+GGG | 0.624947 | 5_1:-11568624 | Msa0717670:CDS |
| TCAAGAGTACTCATGAGGAA+AGG | 0.630518 | 5_1:-11568449 | Msa0717670:CDS |
| CAAATAGATGAATCATTTGG+GGG | 0.649700 | 5_1:-11568623 | Msa0717670:CDS |
| ATATGTCTAAGAATCTAACC+GGG | 0.682425 | 5_1:+11568819 | None:intergenic |
| AAATAGATGAATCATTTGGG+GGG | 0.703228 | 5_1:-11568622 | Msa0717670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATGAATTAGAAAAAG+TGG | - | chr5_1:11568915-11568934 | Msa0717670:CDS | 15.0% |
| !! | TATTAATGAATTAGAAAAAG+TGG | - | chr5_1:11568915-11568934 | Msa0717670:CDS | 15.0% |
| !! | AAACAAGTTTAAATCATATG+AGG | - | chr5_1:11568303-11568322 | Msa0717670:CDS | 20.0% |
| !! | AAAGTTATGTATCTTCATAT+TGG | - | chr5_1:11568611-11568630 | Msa0717670:CDS | 20.0% |
| !! | AAACAAGTTTAAATCATATG+AGG | - | chr5_1:11568303-11568322 | Msa0717670:CDS | 20.0% |
| !! | AAAGTTATGTATCTTCATAT+TGG | - | chr5_1:11568611-11568630 | Msa0717670:CDS | 20.0% |
| !! | AAAGTTGAAACAATTTGCTT+TGG | - | chr5_1:11568352-11568371 | Msa0717670:CDS | 25.0% |
| ! | AATATGTCTAAGAATCTAAC+CGG | + | chr5_1:11568496-11568515 | None:intergenic | 25.0% |
| ! | GTTAGATTCTTAGACATATT+AGG | - | chr5_1:11568496-11568515 | Msa0717670:CDS | 25.0% |
| ! | AAGCAAATAGATGAATCATT+TGG | - | chr5_1:11568685-11568704 | Msa0717670:CDS | 25.0% |
| ! | AGCAAATAGATGAATCATTT+GGG | - | chr5_1:11568686-11568705 | Msa0717670:CDS | 25.0% |
| !!! | ATGTGTTGATTAACATCTAA+AGG | + | chr5_1:11568721-11568740 | None:intergenic | 25.0% |
| ! | TTAACCTTAGACTTGAAAAT+TGG | + | chr5_1:11568826-11568845 | None:intergenic | 25.0% |
| !! | TGAATTAGAAAAAGTGGATT+TGG | - | chr5_1:11568921-11568940 | Msa0717670:CDS | 25.0% |
| !! | AAAGTTGAAACAATTTGCTT+TGG | - | chr5_1:11568352-11568371 | Msa0717670:CDS | 25.0% |
| ! | AATATGTCTAAGAATCTAAC+CGG | + | chr5_1:11568496-11568515 | None:intergenic | 25.0% |
| ! | GTTAGATTCTTAGACATATT+AGG | - | chr5_1:11568496-11568515 | Msa0717670:CDS | 25.0% |
| ! | AAGCAAATAGATGAATCATT+TGG | - | chr5_1:11568685-11568704 | Msa0717670:CDS | 25.0% |
| ! | AGCAAATAGATGAATCATTT+GGG | - | chr5_1:11568686-11568705 | Msa0717670:CDS | 25.0% |
| !!! | ATGTGTTGATTAACATCTAA+AGG | + | chr5_1:11568721-11568740 | None:intergenic | 25.0% |
| ! | TTAACCTTAGACTTGAAAAT+TGG | + | chr5_1:11568826-11568845 | None:intergenic | 25.0% |
| !! | TGAATTAGAAAAAGTGGATT+TGG | - | chr5_1:11568921-11568940 | Msa0717670:CDS | 25.0% |
| TCTTGAATTCTAATTGTGCT+TGG | + | chr5_1:11568277-11568296 | None:intergenic | 30.0% | |
| AAGCACAATTAGAATTCAAG+AGG | - | chr5_1:11568276-11568295 | Msa0717670:CDS | 30.0% | |
| ! | GCAAATTGTTTCAACTTTTG+AGG | + | chr5_1:11568350-11568369 | None:intergenic | 30.0% |
| !!! | CATGGAAGATGTTTTGAAAT+TGG | - | chr5_1:11568405-11568424 | Msa0717670:CDS | 30.0% |
| TCTCTCACAAATATGAGAAA+TGG | - | chr5_1:11568449-11568468 | Msa0717670:CDS | 30.0% | |
| CTCTCACAAATATGAGAAAT+GGG | - | chr5_1:11568450-11568469 | Msa0717670:CDS | 30.0% | |
| ATATGTCTAAGAATCTAACC+GGG | + | chr5_1:11568495-11568514 | None:intergenic | 30.0% | |
| ! | GACGTTATTATGTTGATGAA+AGG | - | chr5_1:11568529-11568548 | Msa0717670:CDS | 30.0% |
| GCAAATAGATGAATCATTTG+GGG | - | chr5_1:11568687-11568706 | Msa0717670:CDS | 30.0% | |
| CAAATAGATGAATCATTTGG+GGG | - | chr5_1:11568688-11568707 | Msa0717670:CDS | 30.0% | |
| AAATAGATGAATCATTTGGG+GGG | - | chr5_1:11568689-11568708 | Msa0717670:CDS | 30.0% | |
| !! | AATTGTGAGAGTTTTTAGAG+AGG | - | chr5_1:11568747-11568766 | Msa0717670:CDS | 30.0% |
| !! | CTCTATTTTTCAATCACTAG+TGG | - | chr5_1:11568786-11568805 | Msa0717670:CDS | 30.0% |
| !!! | TTCACCAATTTTCAAGTCTA+AGG | - | chr5_1:11568819-11568838 | Msa0717670:CDS | 30.0% |
| GTTTGATTGCAATTATCAAG+AGG | - | chr5_1:11568888-11568907 | Msa0717670:CDS | 30.0% | |
| TTTGGCACTTTGTAGATTAA+TGG | - | chr5_1:11568939-11568958 | Msa0717670:CDS | 30.0% | |
| TAAAGAGATTGAAGCTATTG+TGG | - | chr5_1:11569017-11569036 | Msa0717670:CDS | 30.0% | |
| AAGACACACGAGTATTAATA+AGG | + | chr5_1:11569089-11569108 | None:intergenic | 30.0% | |
| TCTTGAATTCTAATTGTGCT+TGG | + | chr5_1:11568277-11568296 | None:intergenic | 30.0% | |
| AAGCACAATTAGAATTCAAG+AGG | - | chr5_1:11568276-11568295 | Msa0717670:CDS | 30.0% | |
| ! | GCAAATTGTTTCAACTTTTG+AGG | + | chr5_1:11568350-11568369 | None:intergenic | 30.0% |
| !!! | CATGGAAGATGTTTTGAAAT+TGG | - | chr5_1:11568405-11568424 | Msa0717670:CDS | 30.0% |
| TCTCTCACAAATATGAGAAA+TGG | - | chr5_1:11568449-11568468 | Msa0717670:CDS | 30.0% | |
| CTCTCACAAATATGAGAAAT+GGG | - | chr5_1:11568450-11568469 | Msa0717670:CDS | 30.0% | |
| ATATGTCTAAGAATCTAACC+GGG | + | chr5_1:11568495-11568514 | None:intergenic | 30.0% | |
| ! | GACGTTATTATGTTGATGAA+AGG | - | chr5_1:11568529-11568548 | Msa0717670:CDS | 30.0% |
| GCAAATAGATGAATCATTTG+GGG | - | chr5_1:11568687-11568706 | Msa0717670:CDS | 30.0% | |
| CAAATAGATGAATCATTTGG+GGG | - | chr5_1:11568688-11568707 | Msa0717670:CDS | 30.0% | |
| AAATAGATGAATCATTTGGG+GGG | - | chr5_1:11568689-11568708 | Msa0717670:CDS | 30.0% | |
| !! | AATTGTGAGAGTTTTTAGAG+AGG | - | chr5_1:11568747-11568766 | Msa0717670:CDS | 30.0% |
| !! | CTCTATTTTTCAATCACTAG+TGG | - | chr5_1:11568786-11568805 | Msa0717670:CDS | 30.0% |
| !!! | TTCACCAATTTTCAAGTCTA+AGG | - | chr5_1:11568819-11568838 | Msa0717670:CDS | 30.0% |
| GTTTGATTGCAATTATCAAG+AGG | - | chr5_1:11568888-11568907 | Msa0717670:CDS | 30.0% | |
| TTTGGCACTTTGTAGATTAA+TGG | - | chr5_1:11568939-11568958 | Msa0717670:CDS | 30.0% | |
| TAAAGAGATTGAAGCTATTG+TGG | - | chr5_1:11569017-11569036 | Msa0717670:CDS | 30.0% | |
| AAGACACACGAGTATTAATA+AGG | + | chr5_1:11569089-11569108 | None:intergenic | 30.0% | |
| AGAAGATTTCTTTGGTGAGA+GGG | + | chr5_1:11568212-11568231 | None:intergenic | 35.0% | |
| CCATAACGAGAAGATTTCTT+TGG | + | chr5_1:11568220-11568239 | None:intergenic | 35.0% | |
| CCAAAGAAATCTTCTCGTTA+TGG | - | chr5_1:11568217-11568236 | Msa0717670:CDS | 35.0% | |
| TGTAAACGTTTACAAGTGCA+TGG | - | chr5_1:11568387-11568406 | Msa0717670:CDS | 35.0% | |
| GTGAGAGAATAATGCTTGTT+GGG | + | chr5_1:11568437-11568456 | None:intergenic | 35.0% | |
| TGTGAGAGAATAATGCTTGT+TGG | + | chr5_1:11568438-11568457 | None:intergenic | 35.0% | |
| AACTTCAATCAGCACTTAGA+AGG | - | chr5_1:11568563-11568582 | Msa0717670:CDS | 35.0% | |
| GCACTTAGAAGGAGAAAATT+TGG | - | chr5_1:11568574-11568593 | Msa0717670:CDS | 35.0% | |
| ! | TCAAGTCTAAGGTTAACAAG+TGG | - | chr5_1:11568830-11568849 | Msa0717670:CDS | 35.0% |
| !! | TTGTTTCAAGAGTACTCATG+AGG | - | chr5_1:11568857-11568876 | Msa0717670:CDS | 35.0% |
| ! | GGTTATTGATAACACAAGCA+TGG | - | chr5_1:11568960-11568979 | Msa0717670:CDS | 35.0% |
| CTATTGTGGTTGTCATTGAA+GGG | - | chr5_1:11569031-11569050 | Msa0717670:CDS | 35.0% | |
| GTCATTGAAGGGTTTGAAAA+TGG | - | chr5_1:11569042-11569061 | Msa0717670:CDS | 35.0% | |
| TGAAGGGTTTGAAAATGGAT+TGG | - | chr5_1:11569047-11569066 | Msa0717670:CDS | 35.0% | |
| AGAAGATTTCTTTGGTGAGA+GGG | + | chr5_1:11568212-11568231 | None:intergenic | 35.0% | |
| CCATAACGAGAAGATTTCTT+TGG | + | chr5_1:11568220-11568239 | None:intergenic | 35.0% | |
| CCAAAGAAATCTTCTCGTTA+TGG | - | chr5_1:11568217-11568236 | Msa0717670:CDS | 35.0% | |
| TGTAAACGTTTACAAGTGCA+TGG | - | chr5_1:11568387-11568406 | Msa0717670:CDS | 35.0% | |
| GTGAGAGAATAATGCTTGTT+GGG | + | chr5_1:11568437-11568456 | None:intergenic | 35.0% | |
| TGTGAGAGAATAATGCTTGT+TGG | + | chr5_1:11568438-11568457 | None:intergenic | 35.0% | |
| AACTTCAATCAGCACTTAGA+AGG | - | chr5_1:11568563-11568582 | Msa0717670:CDS | 35.0% | |
| GCACTTAGAAGGAGAAAATT+TGG | - | chr5_1:11568574-11568593 | Msa0717670:CDS | 35.0% | |
| ! | TCAAGTCTAAGGTTAACAAG+TGG | - | chr5_1:11568830-11568849 | Msa0717670:CDS | 35.0% |
| !! | TTGTTTCAAGAGTACTCATG+AGG | - | chr5_1:11568857-11568876 | Msa0717670:CDS | 35.0% |
| ! | GGTTATTGATAACACAAGCA+TGG | - | chr5_1:11568960-11568979 | Msa0717670:CDS | 35.0% |
| CTATTGTGGTTGTCATTGAA+GGG | - | chr5_1:11569031-11569050 | Msa0717670:CDS | 35.0% | |
| GTCATTGAAGGGTTTGAAAA+TGG | - | chr5_1:11569042-11569061 | Msa0717670:CDS | 35.0% | |
| TGAAGGGTTTGAAAATGGAT+TGG | - | chr5_1:11569047-11569066 | Msa0717670:CDS | 35.0% | |
| GAGAAGATTTCTTTGGTGAG+AGG | + | chr5_1:11568213-11568232 | None:intergenic | 40.0% | |
| TGATGAGTTAGTAGAATGCC+CGG | - | chr5_1:11568474-11568493 | Msa0717670:CDS | 40.0% | |
| !! | TCAAGAGTACTCATGAGGAA+AGG | - | chr5_1:11568862-11568881 | Msa0717670:CDS | 40.0% |
| !! | CACAAGCATGGATTTTGATG+AGG | - | chr5_1:11568972-11568991 | Msa0717670:CDS | 40.0% |
| GCTATTGTGGTTGTCATTGA+AGG | - | chr5_1:11569030-11569049 | Msa0717670:CDS | 40.0% | |
| GAGAAGATTTCTTTGGTGAG+AGG | + | chr5_1:11568213-11568232 | None:intergenic | 40.0% | |
| TGATGAGTTAGTAGAATGCC+CGG | - | chr5_1:11568474-11568493 | Msa0717670:CDS | 40.0% | |
| !! | TCAAGAGTACTCATGAGGAA+AGG | - | chr5_1:11568862-11568881 | Msa0717670:CDS | 40.0% |
| !! | CACAAGCATGGATTTTGATG+AGG | - | chr5_1:11568972-11568991 | Msa0717670:CDS | 40.0% |
| GCTATTGTGGTTGTCATTGA+AGG | - | chr5_1:11569030-11569049 | Msa0717670:CDS | 40.0% | |
| GTGCTTGGATGTGATCTTGT+TGG | + | chr5_1:11568262-11568281 | None:intergenic | 45.0% | |
| GTGCTTGGATGTGATCTTGT+TGG | + | chr5_1:11568262-11568281 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 11568202 | 11569131 | 11568202 | ID=Msa0717670;Name=Msa0717670 |
| chr5_1 | mRNA | 11568202 | 11569131 | 11568202 | ID=Msa0717670-mRNA-1;Parent=Msa0717670;Name=Msa0717670-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|309 |
| chr5_1 | exon | 11568202 | 11569131 | 11568202 | ID=Msa0717670-mRNA-1:exon:4735;Parent=Msa0717670-mRNA-1 |
| chr5_1 | CDS | 11568202 | 11569131 | 11568202 | ID=Msa0717670-mRNA-1:cds;Parent=Msa0717670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
