Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220300 | XP_013465033.1 | 95.219 | 502 | 23 | 1 | 1 | 502 | 1 | 501 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220300 | sp|Q8S8I1|QWRF3_ARATH | 37.568 | 370 | 192 | 9 | 150 | 482 | 101 | 468 | 3.72e-71 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220300 | A0A072VC90 | 95.219 | 502 | 23 | 1 | 1 | 502 | 1 | 501 | 0.0 | 951 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0220300 | 0.809245 | 2.081685e-50 | -8.615850e-47 |
| Msa0017510 | Msa0220300 | 0.802782 | 4.765568e-49 | -8.615850e-47 |
| Msa0022640 | Msa0220300 | 0.803789 | 2.948156e-49 | -8.615850e-47 |
| Msa0036430 | Msa0220300 | 0.804200 | 2.421266e-49 | -8.615850e-47 |
| Msa0036960 | Msa0220300 | 0.819890 | 9.158961e-53 | -8.615850e-47 |
| Msa0044100 | Msa0220300 | 0.811130 | 8.166854e-51 | -8.615850e-47 |
| Msa0057240 | Msa0220300 | 0.803562 | 3.285556e-49 | -8.615850e-47 |
| Msa0078430 | Msa0220300 | 0.847011 | 1.514851e-59 | -8.615850e-47 |
| Msa0130570 | Msa0220300 | 0.816752 | 4.703316e-52 | -8.615850e-47 |
| Msa0141100 | Msa0220300 | 0.869926 | 2.146444e-66 | -8.615850e-47 |
| Msa0149560 | Msa0220300 | 0.802822 | 4.673653e-49 | -8.615850e-47 |
| Msa0153420 | Msa0220300 | 0.803494 | 3.394102e-49 | -8.615850e-47 |
| Msa0157290 | Msa0220300 | 0.802842 | 4.629917e-49 | -8.615850e-47 |
| Msa0161680 | Msa0220300 | 0.801416 | 9.099686e-49 | -8.615850e-47 |
| Msa0183750 | Msa0220300 | 0.830979 | 2.164355e-55 | -8.615850e-47 |
| Msa0191040 | Msa0220300 | 0.882802 | 7.675485e-71 | -8.615850e-47 |
| Msa0203030 | Msa0220300 | 0.800896 | 1.162493e-48 | -8.615850e-47 |
| Msa0206800 | Msa0220300 | 0.829312 | 5.524190e-55 | -8.615850e-47 |
| Msa0220300 | Msa0225600 | 0.816784 | 4.626590e-52 | -8.615850e-47 |
| Msa0220300 | Msa0233340 | 0.882918 | 6.960225e-71 | -8.615850e-47 |
| Msa0220300 | Msa0236110 | 0.806232 | 9.092317e-50 | -8.615850e-47 |
| Msa0220300 | Msa0251240 | 0.874109 | 8.728496e-68 | -8.615850e-47 |
| Msa0220300 | Msa0266450 | 0.811764 | 5.947736e-51 | -8.615850e-47 |
| Msa0220300 | Msa0288190 | 0.842370 | 2.696029e-58 | -8.615850e-47 |
| Msa0220300 | Msa0288200 | 0.835982 | 1.221677e-56 | -8.615850e-47 |
| Msa0220300 | Msa0290010 | 0.802255 | 6.119696e-49 | -8.615850e-47 |
| Msa0220300 | Msa0301200 | 0.800827 | 1.200796e-48 | -8.615850e-47 |
| Msa0220300 | Msa0311690 | 0.870175 | 1.780214e-66 | -8.615850e-47 |
| Msa0220300 | Msa0314630 | 0.802849 | 4.614333e-49 | -8.615850e-47 |
| Msa0220300 | Msa0315250 | 0.880290 | 6.201438e-70 | -8.615850e-47 |
| Msa0220300 | Msa0326540 | 0.840610 | 7.840150e-58 | -8.615850e-47 |
| Msa0220300 | Msa0374850 | 0.871308 | 7.544012e-67 | -8.615850e-47 |
| Msa0220300 | Msa0375090 | 0.860588 | 1.859918e-63 | -8.615850e-47 |
| Msa0220300 | Msa0470340 | 0.847045 | 1.481838e-59 | -8.615850e-47 |
| Msa0220300 | Msa0470860 | 0.811139 | 8.130974e-51 | -8.615850e-47 |
| Msa0220300 | Msa0480950 | 0.839781 | 1.290211e-57 | -8.615850e-47 |
| Msa0220300 | Msa0481110 | 0.816428 | 5.559221e-52 | -8.615850e-47 |
| Msa0220300 | Msa0503580 | 0.813364 | 2.656625e-51 | -8.615850e-47 |
| Msa0220300 | Msa0505360 | 0.800975 | 1.119751e-48 | -8.615850e-47 |
| Msa0220300 | Msa0520510 | 0.818169 | 2.254688e-52 | -8.615850e-47 |
| Msa0220300 | Msa0531430 | 0.889898 | 1.603336e-73 | -8.615850e-47 |
| Msa0220300 | Msa0534570 | 0.845041 | 5.201736e-59 | -8.615850e-47 |
| Msa0220300 | Msa0534590 | 0.881478 | 2.321754e-70 | -8.615850e-47 |
| Msa0220300 | Msa0565600 | 0.814698 | 1.349313e-51 | -8.615850e-47 |
| Msa0220300 | Msa0590800 | 0.866411 | 2.908115e-65 | -8.615850e-47 |
| Msa0220300 | Msa0611380 | 0.862266 | 5.722336e-64 | -8.615850e-47 |
| Msa0220300 | Msa0618180 | 0.814611 | 1.410804e-51 | -8.615850e-47 |
| Msa0220300 | Msa0618290 | 0.819480 | 1.136036e-52 | -8.615850e-47 |
| Msa0220300 | Msa0628640 | 0.843459 | 1.383335e-58 | -8.615850e-47 |
| Msa0220300 | Msa0631120 | 0.891048 | 5.668864e-74 | -8.615850e-47 |
| Msa0220300 | Msa0666030 | 0.875635 | 2.637655e-68 | -8.615850e-47 |
| Msa0220300 | Msa0669340 | 0.849617 | 2.882343e-60 | -8.615850e-47 |
| Msa0220300 | Msa0701970 | 0.807043 | 6.128308e-50 | -8.615850e-47 |
| Msa0220300 | Msa0706420 | 0.801362 | 9.333824e-49 | -8.615850e-47 |
| Msa0220300 | Msa0716450 | 0.867373 | 1.435402e-65 | -8.615850e-47 |
| Msa0220300 | Msa0717260 | 0.860676 | 1.749316e-63 | -8.615850e-47 |
| Msa0220300 | Msa0717670 | 0.811863 | 5.659951e-51 | -8.615850e-47 |
| Msa0220300 | Msa0758320 | 0.866114 | 3.613307e-65 | -8.615850e-47 |
| Msa0220300 | Msa0775440 | 0.810753 | 9.856082e-51 | -8.615850e-47 |
| Msa0220300 | Msa0799030 | 0.848012 | 8.037458e-60 | -8.615850e-47 |
| Msa0220300 | Msa0799700 | 0.816900 | 4.356372e-52 | -8.615850e-47 |
| Msa0220300 | Msa0810020 | 0.801357 | 9.353255e-49 | -8.615850e-47 |
| Msa0220300 | Msa0812820 | 0.820038 | 8.472698e-53 | -8.615850e-47 |
| Msa0220300 | Msa0837440 | 0.841184 | 5.543744e-58 | -8.615850e-47 |
| Msa0220300 | Msa0837980 | 0.860002 | 2.797730e-63 | -8.615850e-47 |
| Msa0220300 | Msa0853320 | 0.852924 | 3.353161e-61 | -8.615850e-47 |
| Msa0220300 | Msa0858840 | 0.803545 | 3.311942e-49 | -8.615850e-47 |
| Msa0220300 | Msa0870620 | 0.812743 | 3.635618e-51 | -8.615850e-47 |
| Msa0220300 | Msa0880140 | 0.805751 | 1.147657e-49 | -8.615850e-47 |
| Msa0220300 | Msa0880710 | 0.826128 | 3.214844e-54 | -8.615850e-47 |
| Msa0220300 | Msa0885060 | 0.821336 | 4.262279e-53 | -8.615850e-47 |
| Msa0220300 | Msa0979510 | 0.802164 | 6.387556e-49 | -8.615850e-47 |
| Msa0220300 | Msa1002620 | 0.859688 | 3.477940e-63 | -8.615850e-47 |
| Msa0220300 | Msa1010110 | 0.803144 | 4.010117e-49 | -8.615850e-47 |
| Msa0220300 | Msa1020720 | 0.818097 | 2.340959e-52 | -8.615850e-47 |
| Msa0220300 | Msa1033560 | 0.844587 | 6.894346e-59 | -8.615850e-47 |
| Msa0220300 | Msa1034680 | 0.820287 | 7.429473e-53 | -8.615850e-47 |
| Msa0220300 | Msa1073340 | 0.821282 | 4.387100e-53 | -8.615850e-47 |
| Msa0220300 | Msa1113850 | 0.849756 | 2.635235e-60 | -8.615850e-47 |
| Msa0220300 | Msa1160400 | 0.819581 | 1.077577e-52 | -8.615850e-47 |
| Msa0220300 | Msa1172670 | 0.801268 | 9.755759e-49 | -8.615850e-47 |
| Msa0220300 | Msa1179460 | 0.804197 | 2.424597e-49 | -8.615850e-47 |
| Msa0220300 | Msa1190120 | 0.806778 | 6.974416e-50 | -8.615850e-47 |
| Msa0220300 | Msa1201890 | 0.807459 | 5.003747e-50 | -8.615850e-47 |
| Msa0220300 | Msa1203000 | 0.857354 | 1.728138e-62 | -8.615850e-47 |
| Msa0220300 | Msa1211550 | 0.838535 | 2.714889e-57 | -8.615850e-47 |
| Msa0220300 | Msa1217940 | 0.833575 | 4.928687e-56 | -8.615850e-47 |
| Msa0220300 | Msa1218480 | 0.828289 | 9.763419e-55 | -8.615850e-47 |
| Msa0220300 | Msa1219260 | 0.851488 | 8.590360e-61 | -8.615850e-47 |
| Msa0220300 | Msa1227950 | 0.804521 | 2.075482e-49 | -8.615850e-47 |
| Msa0220300 | Msa1227970 | 0.813967 | 1.957527e-51 | -8.615850e-47 |
| Msa0220300 | Msa1254700 | 0.825658 | 4.156474e-54 | -8.615850e-47 |
| Msa0220300 | Msa1255280 | 0.840233 | 9.836342e-58 | -8.615850e-47 |
| Msa0220300 | Msa1258050 | 0.842770 | 2.110574e-58 | -8.615850e-47 |
| Msa0220300 | Msa1266960 | 0.855837 | 4.824850e-62 | -8.615850e-47 |
| Msa0220300 | Msa1289280 | 0.807860 | 4.112907e-50 | -8.615850e-47 |
| Msa0220300 | Msa1329920 | 0.809629 | 1.721754e-50 | -8.615850e-47 |
| Msa0220300 | Msa1339940 | 0.833395 | 5.466406e-56 | -8.615850e-47 |
| Msa0220300 | Msa1345420 | 0.806894 | 6.588619e-50 | -8.615850e-47 |
| Msa0220300 | Msa1369700 | 0.826529 | 2.581218e-54 | -8.615850e-47 |
| Msa0220300 | Msa1395870 | 0.831053 | 2.075927e-55 | -8.615850e-47 |
| Msa0220300 | Msa1397250 | 0.823097 | 1.663992e-53 | -8.615850e-47 |
| Msa0220300 | Msa1399560 | 0.849472 | 3.164790e-60 | -8.615850e-47 |
| Msa0220300 | Msa1401150 | 0.806878 | 6.642166e-50 | -8.615850e-47 |
| Msa0220300 | Msa1429420 | 0.805185 | 1.507888e-49 | -8.615850e-47 |
| Msa0220300 | Msa1437190 | 0.831683 | 1.452583e-55 | -8.615850e-47 |
| Msa0220300 | Msa1440340 | 0.829758 | 4.302486e-55 | -8.615850e-47 |
| Msa0220300 | Msa1443840 | 0.850163 | 2.027859e-60 | -8.615850e-47 |
| Msa0220300 | Msa1452060 | 0.833221 | 6.038810e-56 | -8.615850e-47 |
| Msa0220300 | Msa1460380 | 0.833576 | 4.925087e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220300 | MtrunA17_Chr2g0323821 | 95.219 | 502 | 23 | 1 | 1 | 502 | 1 | 501 | 0.0 | 951 |
| Msa0220300 | MtrunA17_Chr3g0079101 | 28.405 | 257 | 161 | 2 | 242 | 483 | 119 | 367 | 6.22e-28 | 115 |
| Msa0220300 | MtrunA17_Chr1g0207481 | 28.807 | 243 | 169 | 3 | 245 | 484 | 369 | 610 | 1.40e-27 | 116 |
| Msa0220300 | MtrunA17_Chr4g0073681 | 32.889 | 225 | 134 | 3 | 265 | 485 | 399 | 610 | 8.55e-27 | 114 |
| Msa0220300 | MtrunA17_Chr1g0152681 | 28.490 | 351 | 215 | 8 | 150 | 492 | 299 | 621 | 1.11e-26 | 114 |
| Msa0220300 | MtrunA17_Chr2g0291221 | 27.273 | 198 | 144 | 0 | 287 | 484 | 283 | 480 | 1.22e-19 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220300 | AT2G20815.1 | 37.568 | 370 | 192 | 9 | 150 | 482 | 101 | 468 | 3.78e-72 | 237 |
| Msa0220300 | AT2G20815.2 | 37.466 | 371 | 192 | 10 | 150 | 482 | 72 | 440 | 1.29e-70 | 232 |
| Msa0220300 | AT2G20815.3 | 37.466 | 371 | 192 | 10 | 150 | 482 | 101 | 469 | 2.17e-70 | 233 |
| Msa0220300 | AT2G20815.4 | 32.682 | 358 | 178 | 9 | 150 | 482 | 72 | 391 | 1.83e-52 | 183 |
| Msa0220300 | AT2G24070.1 | 33.333 | 219 | 136 | 1 | 265 | 483 | 376 | 584 | 8.22e-30 | 123 |
| Msa0220300 | AT2G24070.3 | 33.333 | 219 | 136 | 1 | 265 | 483 | 376 | 584 | 8.22e-30 | 123 |
| Msa0220300 | AT2G24070.2 | 33.333 | 219 | 136 | 1 | 265 | 483 | 376 | 584 | 8.22e-30 | 123 |
| Msa0220300 | AT4G30710.3 | 32.727 | 220 | 136 | 3 | 265 | 483 | 412 | 620 | 7.49e-29 | 120 |
| Msa0220300 | AT4G30710.1 | 32.727 | 220 | 136 | 3 | 265 | 483 | 412 | 620 | 7.49e-29 | 120 |
| Msa0220300 | AT4G30710.2 | 32.727 | 220 | 136 | 3 | 265 | 483 | 412 | 620 | 2.98e-28 | 119 |
| Msa0220300 | AT4G30710.4 | 32.701 | 211 | 130 | 3 | 265 | 474 | 412 | 611 | 2.23e-26 | 113 |
| Msa0220300 | AT4G25190.1 | 28.467 | 274 | 166 | 5 | 239 | 489 | 128 | 394 | 1.31e-25 | 108 |
| Msa0220300 | AT1G49890.1 | 29.183 | 257 | 156 | 5 | 244 | 484 | 400 | 646 | 1.11e-24 | 108 |
| Msa0220300 | AT4G25190.2 | 28.364 | 275 | 166 | 6 | 239 | 489 | 128 | 395 | 4.04e-24 | 104 |
| Msa0220300 | AT3G19570.2 | 29.167 | 192 | 136 | 0 | 293 | 484 | 450 | 641 | 1.50e-23 | 104 |
| Msa0220300 | AT5G43160.1 | 28.333 | 180 | 129 | 0 | 306 | 485 | 82 | 261 | 1.17e-20 | 92.0 |
| Msa0220300 | AT5G43160.2 | 28.333 | 180 | 129 | 0 | 306 | 485 | 82 | 261 | 1.17e-20 | 92.0 |
| Msa0220300 | AT3G19570.1 | 30.814 | 172 | 119 | 0 | 293 | 464 | 450 | 621 | 1.88e-20 | 95.1 |
| Msa0220300 | AT3G60000.2 | 27.835 | 194 | 136 | 2 | 292 | 483 | 250 | 441 | 4.99e-18 | 87.0 |
| Msa0220300 | AT3G19570.4 | 32.414 | 145 | 98 | 0 | 293 | 437 | 450 | 594 | 6.03e-16 | 81.3 |
| Msa0220300 | AT3G19570.3 | 32.414 | 145 | 98 | 0 | 293 | 437 | 450 | 594 | 6.03e-16 | 81.3 |
| Msa0220300 | AT3G60000.1 | 28.994 | 169 | 116 | 2 | 292 | 458 | 250 | 416 | 8.38e-16 | 80.1 |
| Msa0220300 | AT2G44190.1 | 26.866 | 201 | 143 | 2 | 287 | 485 | 264 | 462 | 1.45e-15 | 79.3 |
Find 103 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGTTAACATTGACTTAA+TGG | 0.231221 | 2_1:-68501876 | None:intergenic |
| AAACTAATCCTACATGTTAT+AGG | 0.238957 | 2_1:-68502845 | None:intergenic |
| AATTCACCATCGAATGGTTT+TGG | 0.272527 | 2_1:+68500837 | Msa0220300:CDS |
| TCATCCAAGGAAAACCTTCC+TGG | 0.274888 | 2_1:-68500447 | None:intergenic |
| TGTGTCTCCTATCGTCTTCC+TGG | 0.281185 | 2_1:-68500125 | None:intergenic |
| ATTGGAAGCTTGGGGAAGTA+TGG | 0.297553 | 2_1:+68501479 | Msa0220300:CDS |
| TTCAACTCCTTTCGCCTTTG+TGG | 0.332527 | 2_1:-68500760 | None:intergenic |
| AAGAAGCTTAATTCTAATAA+TGG | 0.333548 | 2_1:+68500411 | Msa0220300:CDS |
| TTGTTCTATGATTCTTTCTT+CGG | 0.337853 | 2_1:-68500235 | None:intergenic |
| AACCATTCGATGGTGAATTA+AGG | 0.340592 | 2_1:-68500833 | None:intergenic |
| ACAAGAGCAATTGGTGGTTC+TGG | 0.341427 | 2_1:+68500351 | Msa0220300:CDS |
| TCAACTCCTTTCGCCTTTGT+GGG | 0.346043 | 2_1:-68500759 | None:intergenic |
| CTTAATTCTAATAATGGTTC+AGG | 0.357073 | 2_1:+68500417 | Msa0220300:CDS |
| GTTAAAGTTATTGGAAGCTT+GGG | 0.357089 | 2_1:+68501470 | Msa0220300:intron |
| CGTAACAGTATTTCTGAACT+TGG | 0.358154 | 2_1:-68501289 | None:intergenic |
| CAATGAAGCTTTGGCTTCTC+CGG | 0.358325 | 2_1:+68500530 | Msa0220300:CDS |
| AGGAAATTCAGTGGATTCTA+TGG | 0.360707 | 2_1:-68500064 | None:intergenic |
| TGCTGCAATACTATCAGAAT+TGG | 0.365699 | 2_1:+68502401 | Msa0220300:CDS |
| AGCAGAATGCAAACACTCTT+TGG | 0.368717 | 2_1:-68501532 | None:intergenic |
| AATGGTTCAGGCATTGTTCC+AGG | 0.369988 | 2_1:+68500429 | Msa0220300:CDS |
| GCCTGGTTCAATTTGAAGAT+TGG | 0.377854 | 2_1:+68502623 | Msa0220300:CDS |
| CAAGTCATCGATTCGGAGCC+AGG | 0.381540 | 2_1:+68500107 | Msa0220300:CDS |
| AGAGCAATTTGATATGTGTC+TGG | 0.382143 | 2_1:+68501256 | Msa0220300:intron |
| CAAAGCTTCATTGTTGGATT+CGG | 0.388717 | 2_1:-68500520 | None:intergenic |
| ACTGCTAGGGATTACTTCAT+AGG | 0.393630 | 2_1:+68502672 | Msa0220300:CDS |
| TACATCCATTGCTATTCGTC+AGG | 0.402804 | 2_1:+68501835 | Msa0220300:CDS |
| AATGATCAAACAAGAGCAAT+TGG | 0.411484 | 2_1:+68500342 | Msa0220300:CDS |
| CGAATCCAACAATGAAGCTT+TGG | 0.417224 | 2_1:+68500521 | Msa0220300:CDS |
| GCATCACTCATCAACCTTGT+AGG | 0.424035 | 2_1:-68500576 | None:intergenic |
| AGTTAAAGTTATTGGAAGCT+TGG | 0.426135 | 2_1:+68501469 | Msa0220300:intron |
| GAAGAGGACTAATTCGATTA+CGG | 0.428004 | 2_1:+68500677 | Msa0220300:CDS |
| AAGAGGACTAATTCGATTAC+GGG | 0.433019 | 2_1:+68500678 | Msa0220300:CDS |
| TGTGTGCAGAGTTCCTCTTT+TGG | 0.450064 | 2_1:+68501554 | Msa0220300:CDS |
| AGAAGCCAAAGCTTCATTGT+TGG | 0.458888 | 2_1:-68500526 | None:intergenic |
| TCACAGTGGGCTTTGTCACC+AGG | 0.459279 | 2_1:+68500717 | Msa0220300:CDS |
| GGAGCTTCTGATTCTAACAT+TGG | 0.470930 | 2_1:+68500621 | Msa0220300:CDS |
| TCTCTATGTAGATATAGATC+AGG | 0.476902 | 2_1:+68502695 | Msa0220300:three_prime_UTR |
| CTTTGTTGACGAGGGTTCAC+CGG | 0.482670 | 2_1:-68500015 | None:intergenic |
| CTGTTCTACGTCGTCAACTC+TGG | 0.489175 | 2_1:+68500166 | Msa0220300:CDS |
| CAACTGCAGGATTTACTGCT+AGG | 0.490974 | 2_1:+68502658 | Msa0220300:CDS |
| TTCTATGGAGGTGGAAGGCG+AGG | 0.496580 | 2_1:-68500049 | None:intergenic |
| TTGATAATCGTTTGATTCAG+TGG | 0.496593 | 2_1:+68500892 | Msa0220300:CDS |
| TTCAGTGGATTCTATGGAGG+TGG | 0.499093 | 2_1:-68500058 | None:intergenic |
| TTCAATTTGAAGATTGGCAA+AGG | 0.500856 | 2_1:+68502629 | Msa0220300:CDS |
| ACCTTAGCACCTTCCAAAAG+AGG | 0.508872 | 2_1:-68501567 | None:intergenic |
| CTTGTAGGAACTTCCACCAC+TGG | 0.509361 | 2_1:-68500561 | None:intergenic |
| GGTGGTTCTGGAAGATTCAC+AGG | 0.510011 | 2_1:+68500363 | Msa0220300:CDS |
| GACTTGCGTATGACGGAGGA+AGG | 0.513844 | 2_1:-68500090 | None:intergenic |
| GCCAATCTTCAAATTGAACC+AGG | 0.515880 | 2_1:-68502624 | None:intergenic |
| GAGCTTCTGATTCTAACATT+GGG | 0.516533 | 2_1:+68500622 | Msa0220300:CDS |
| ACATAACATATCTGTTGTTG+AGG | 0.527727 | 2_1:+68502476 | Msa0220300:CDS |
| GAATTAGTCCTCTTCATCAT+CGG | 0.532045 | 2_1:-68500669 | None:intergenic |
| CTTGAAAACTCTGACCTCCC+TGG | 0.540193 | 2_1:-68500735 | None:intergenic |
| CTTGCGTATGACGGAGGAAG+GGG | 0.541168 | 2_1:-68500088 | None:intergenic |
| GGCCTTAATTCACCATCGAA+TGG | 0.542030 | 2_1:+68500831 | Msa0220300:CDS |
| GAAGTGTTTCGCGCCTTCAT+CGG | 0.542889 | 2_1:-68499991 | None:intergenic |
| CGTTGAAACCGATGATGAAG+AGG | 0.543848 | 2_1:+68500661 | Msa0220300:CDS |
| CAACTCCTTTCGCCTTTGTG+GGG | 0.545829 | 2_1:-68500758 | None:intergenic |
| TGAACCCTCGTCAACAAAGA+AGG | 0.550286 | 2_1:+68500019 | Msa0220300:CDS |
| GCAAAGGAAATATCAACTGC+AGG | 0.551022 | 2_1:+68502645 | Msa0220300:CDS |
| TCTAACATTGGGAATTTGAA+CGG | 0.552992 | 2_1:+68500633 | Msa0220300:CDS |
| AACTGCAGGATTTACTGCTA+GGG | 0.555292 | 2_1:+68502659 | Msa0220300:CDS |
| TTGTTTCCAAAACCATTCGA+TGG | 0.559989 | 2_1:-68500843 | None:intergenic |
| TCATACGCAAGTCATCGATT+CGG | 0.566805 | 2_1:+68500100 | Msa0220300:CDS |
| TCAAGCCCCACAAAGGCGAA+AGG | 0.573131 | 2_1:+68500753 | Msa0220300:CDS |
| AATCGATGACTTGCGTATGA+CGG | 0.575103 | 2_1:-68500097 | None:intergenic |
| TTCGGAGCCAGGAAGACGAT+AGG | 0.577435 | 2_1:+68500118 | Msa0220300:CDS |
| GAGCAATTTGATATGTGTCT+GGG | 0.582338 | 2_1:+68501257 | Msa0220300:intron |
| TCCGGCAAGAAAACCAGTGG+TGG | 0.587118 | 2_1:+68500548 | Msa0220300:CDS |
| GAAACCTTCTTTGTTGACGA+GGG | 0.587157 | 2_1:-68500023 | None:intergenic |
| CACAGTGGGCTTTGTCACCA+GGG | 0.588640 | 2_1:+68500718 | Msa0220300:CDS |
| AAATTCAAGCATAACTAGCT+CGG | 0.589143 | 2_1:+68500491 | Msa0220300:CDS |
| AGAATGCAAACACTCTTTGG+TGG | 0.589899 | 2_1:-68501529 | None:intergenic |
| AAGCAGTGTAAAGTGCAGCC+TGG | 0.591075 | 2_1:+68502606 | Msa0220300:CDS |
| CAGTGGTGGAAGTTCCTACA+AGG | 0.591497 | 2_1:+68500562 | Msa0220300:CDS |
| GAAGGCGCGAAACACTTCTC+CGG | 0.599113 | 2_1:+68499996 | Msa0220300:CDS |
| GTTCAGGCATTGTTCCAGGA+AGG | 0.601143 | 2_1:+68500433 | Msa0220300:CDS |
| ACTTGCGTATGACGGAGGAA+GGG | 0.602214 | 2_1:-68500089 | None:intergenic |
| AGAAACCTTCTTTGTTGACG+AGG | 0.602654 | 2_1:-68500024 | None:intergenic |
| GATCAAACAAGAGCAATTGG+TGG | 0.611838 | 2_1:+68500345 | Msa0220300:CDS |
| AGATCAAACCTATAACATGT+AGG | 0.614732 | 2_1:+68502837 | Msa0220300:three_prime_UTR |
| CATGTTATAGGTTTGATCTG+AGG | 0.615978 | 2_1:-68502833 | None:intergenic |
| AGAGGCCTGACGAATAGCAA+TGG | 0.620659 | 2_1:-68501840 | None:intergenic |
| GTGGATTCTATGGAGGTGGA+AGG | 0.624761 | 2_1:-68500054 | None:intergenic |
| CGATGACTTGCGTATGACGG+AGG | 0.625049 | 2_1:-68500094 | None:intergenic |
| TTAAAGTTATTGGAAGCTTG+GGG | 0.630426 | 2_1:+68501471 | Msa0220300:CDS |
| AATGGAAGCTGCGAGATCAG+AGG | 0.638515 | 2_1:-68501858 | None:intergenic |
| TGAGTGATGCAACATTGAGA+AGG | 0.641073 | 2_1:+68500589 | Msa0220300:CDS |
| CAAGAGTTCGAAATCACAGT+GGG | 0.647303 | 2_1:+68500704 | Msa0220300:CDS |
| ACATTGAGAAGGGCTAGAAG+AGG | 0.654076 | 2_1:+68500600 | Msa0220300:CDS |
| TTCTCCGGCAAGAAAACCAG+TGG | 0.654553 | 2_1:+68500545 | Msa0220300:CDS |
| TCTATGGAGGTGGAAGGCGA+GGG | 0.655607 | 2_1:-68500048 | None:intergenic |
| AAATTCAGTGGATTCTATGG+AGG | 0.656704 | 2_1:-68500061 | None:intergenic |
| GAGTGATGCAACATTGAGAA+GGG | 0.656920 | 2_1:+68500590 | Msa0220300:CDS |
| AAGCTTGGGGAAGTATGGAA+AGG | 0.660593 | 2_1:+68501484 | Msa0220300:CDS |
| CGTATGACGGAGGAAGGGGA+AGG | 0.662645 | 2_1:-68500084 | None:intergenic |
| GGAAGGGGAAGGAAATTCAG+TGG | 0.670014 | 2_1:-68500073 | None:intergenic |
| AATTTGATATGTGTCTGGGA+TGG | 0.675214 | 2_1:+68501261 | Msa0220300:CDS |
| CAAACAAGTGTACCTCGGTG+TGG | 0.734371 | 2_1:-68500962 | None:intergenic |
| AGTGGGCTTTGTCACCAGGG+AGG | 0.741250 | 2_1:+68500721 | Msa0220300:CDS |
| ACAAGAGTTCGAAATCACAG+TGG | 0.753232 | 2_1:+68500703 | Msa0220300:CDS |
| AGAGGACTAATTCGATTACG+GGG | 0.771281 | 2_1:+68500679 | Msa0220300:CDS |
| AAACATTTCTCGCCACACCG+AGG | 0.776407 | 2_1:+68500950 | Msa0220300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTACAAAAACAAATT+TGG | - | chr2_1:68501414-68501433 | None:intergenic | 10.0% |
| !!! | TTAATATTTGAAATTGTTAA+CGG | - | chr2_1:68501686-68501705 | None:intergenic | 10.0% |
| !! | AAACATATAAAAAAATTCAA+CGG | - | chr2_1:68501733-68501752 | None:intergenic | 10.0% |
| !! | ATGATTAATTGAATATAAAA+AGG | + | chr2_1:68502037-68502056 | Msa0220300:intron | 10.0% |
| !!! | AAATCCTTTTAATTTATTTA+TGG | + | chr2_1:68502547-68502566 | Msa0220300:intron | 10.0% |
| !! | AAATTGAATTAACATTATCT+TGG | + | chr2_1:68501218-68501237 | Msa0220300:intron | 15.0% |
| !! | TCATAAATTTGACAATAATT+TGG | + | chr2_1:68501971-68501990 | Msa0220300:intron | 15.0% |
| !!! | CGTTTAAAAATTTAAAATCA+TGG | - | chr2_1:68502100-68502119 | None:intergenic | 15.0% |
| !! | TCAACCATAAATAAATTAAA+AGG | - | chr2_1:68502554-68502573 | None:intergenic | 15.0% |
| !! | AAGAAGCTTAATTCTAATAA+TGG | + | chr2_1:68500411-68500430 | Msa0220300:CDS | 20.0% |
| !!! | AACTGATTTATTGTTGTTTT+TGG | + | chr2_1:68501445-68501464 | Msa0220300:intron | 20.0% |
| !!! | AAGTGATATTTTTCGATTTA+AGG | + | chr2_1:68501616-68501635 | Msa0220300:intron | 20.0% |
| !!! | AGTGATATTTTTCGATTTAA+GGG | + | chr2_1:68501617-68501636 | Msa0220300:intron | 20.0% |
| !! | GTTAATGCAATTCAAATAAA+TGG | + | chr2_1:68501997-68502016 | Msa0220300:intron | 20.0% |
| !! | AATAAATGGTTAACTACATT+CGG | + | chr2_1:68502011-68502030 | Msa0220300:intron | 20.0% |
| !! | AAATCATGGTTAATTATGTT+CGG | - | chr2_1:68502086-68502105 | None:intergenic | 20.0% |
| !!! | GATTGATTTTATCACTATAT+TGG | + | chr2_1:68502572-68502591 | Msa0220300:intron | 20.0% |
| ! | TTGTTCTATGATTCTTTCTT+CGG | - | chr2_1:68500238-68500257 | None:intergenic | 25.0% |
| ! | CTTAATTCTAATAATGGTTC+AGG | + | chr2_1:68500417-68500436 | Msa0220300:CDS | 25.0% |
| !! | GTTGAAAAACTACTCAATTT+TGG | + | chr2_1:68500777-68500796 | Msa0220300:CDS | 25.0% |
| ! | TTCAAGAGTAAAAAATCTGT+TGG | + | chr2_1:68500810-68500829 | Msa0220300:CDS | 25.0% |
| ! | CAACTTATGAAAACAACTTA+CGG | - | chr2_1:68501026-68501045 | None:intergenic | 25.0% |
| ! | TGTTGAAATAAACTGAAACT+AGG | + | chr2_1:68501057-68501076 | Msa0220300:intron | 25.0% |
| ! | GGCAGATATTAATCAAAATT+TGG | - | chr2_1:68501393-68501412 | None:intergenic | 25.0% |
| !!! | TTTTTGGCAGTTAAAGTTAT+TGG | + | chr2_1:68501461-68501480 | Msa0220300:intron | 25.0% |
| !! | TATTTGAAATTGTTAACGGT+CGG | - | chr2_1:68501682-68501701 | None:intergenic | 25.0% |
| ! | ATAATCTAAGTGATCATGAT+AGG | + | chr2_1:68501757-68501776 | Msa0220300:intron | 25.0% |
| ! | TAATCTAAGTGATCATGATA+GGG | + | chr2_1:68501758-68501777 | Msa0220300:intron | 25.0% |
| !!! | AGAAGTTAACATTGACTTAA+TGG | - | chr2_1:68501879-68501898 | None:intergenic | 25.0% |
| ! | ATTGTGCTAGTCATTTATTA+TGG | + | chr2_1:68501927-68501946 | Msa0220300:intron | 25.0% |
| ! | TTGTGCTAGTCATTTATTAT+GGG | + | chr2_1:68501928-68501947 | Msa0220300:intron | 25.0% |
| ! | AAACTAATCCTACATGTTAT+AGG | - | chr2_1:68502848-68502867 | None:intergenic | 25.0% |
| AATGATCAAACAAGAGCAAT+TGG | + | chr2_1:68500342-68500361 | Msa0220300:CDS | 30.0% | |
| AAATTCAAGCATAACTAGCT+CGG | + | chr2_1:68500491-68500510 | Msa0220300:CDS | 30.0% | |
| TCTAACATTGGGAATTTGAA+CGG | + | chr2_1:68500633-68500652 | Msa0220300:CDS | 30.0% | |
| ! | TTGATAATCGTTTGATTCAG+TGG | + | chr2_1:68500892-68500911 | Msa0220300:CDS | 30.0% |
| !! | AGTTGTTTTCATAAGTTGTC+CGG | + | chr2_1:68501028-68501047 | Msa0220300:intron | 30.0% |
| GTTTATTTCAACAAGTGTTC+CGG | - | chr2_1:68501050-68501069 | None:intergenic | 30.0% | |
| AGTTAAAGTTATTGGAAGCT+TGG | + | chr2_1:68501469-68501488 | Msa0220300:intron | 30.0% | |
| GTTAAAGTTATTGGAAGCTT+GGG | + | chr2_1:68501470-68501489 | Msa0220300:intron | 30.0% | |
| TTAAAGTTATTGGAAGCTTG+GGG | + | chr2_1:68501471-68501490 | Msa0220300:CDS | 30.0% | |
| !! | ATTGCTATTTCACAAACTTG+AGG | + | chr2_1:68501645-68501664 | Msa0220300:intron | 30.0% |
| !! | TTGCTATTTCACAAACTTGA+GGG | + | chr2_1:68501646-68501665 | Msa0220300:intron | 30.0% |
| CCTGTAAGTTAAGCATAAAA+AGG | - | chr2_1:68501802-68501821 | None:intergenic | 30.0% | |
| ! | CCTTTTTATGCTTAACTTAC+AGG | + | chr2_1:68501799-68501818 | Msa0220300:intron | 30.0% |
| CTGTATATTTGAACGCAATT+TGG | + | chr2_1:68502127-68502146 | Msa0220300:intron | 30.0% | |
| ATTTGAAAACATGCAAATCG+TGG | + | chr2_1:68502172-68502191 | Msa0220300:intron | 30.0% | |
| CGCAAAATTTGACAACAATT+TGG | - | chr2_1:68502301-68502320 | None:intergenic | 30.0% | |
| !! | TTCTCTTTTGCTATCTATGA+AGG | + | chr2_1:68502333-68502352 | Msa0220300:intron | 30.0% |
| ACATAACATATCTGTTGTTG+AGG | + | chr2_1:68502476-68502495 | Msa0220300:CDS | 30.0% | |
| TTCAATTTGAAGATTGGCAA+AGG | + | chr2_1:68502629-68502648 | Msa0220300:CDS | 30.0% | |
| TCTCTATGTAGATATAGATC+AGG | + | chr2_1:68502695-68502714 | Msa0220300:three_prime_UTR | 30.0% | |
| ! | CAAGTTTTCTACTGTATACA+TGG | + | chr2_1:68502809-68502828 | Msa0220300:three_prime_UTR | 30.0% |
| AGATCAAACCTATAACATGT+AGG | + | chr2_1:68502837-68502856 | Msa0220300:three_prime_UTR | 30.0% | |
| ! | AAATTCAGTGGATTCTATGG+AGG | - | chr2_1:68500064-68500083 | None:intergenic | 35.0% |
| ! | AGGAAATTCAGTGGATTCTA+TGG | - | chr2_1:68500067-68500086 | None:intergenic | 35.0% |
| !! | GACTTATTTTTCGCAGAAGA+AGG | - | chr2_1:68500192-68500211 | None:intergenic | 35.0% |
| TCTTCTGCGAAAAATAAGTC+TGG | + | chr2_1:68500192-68500211 | Msa0220300:CDS | 35.0% | |
| ! | CAGTTTAGCATTTTCATCCA+AGG | - | chr2_1:68500463-68500482 | None:intergenic | 35.0% |
| CAAAGCTTCATTGTTGGATT+CGG | - | chr2_1:68500523-68500542 | None:intergenic | 35.0% | |
| GAGCTTCTGATTCTAACATT+GGG | + | chr2_1:68500622-68500641 | Msa0220300:CDS | 35.0% | |
| GAATTAGTCCTCTTCATCAT+CGG | - | chr2_1:68500672-68500691 | None:intergenic | 35.0% | |
| GAAGAGGACTAATTCGATTA+CGG | + | chr2_1:68500677-68500696 | Msa0220300:CDS | 35.0% | |
| AAGAGGACTAATTCGATTAC+GGG | + | chr2_1:68500678-68500697 | Msa0220300:CDS | 35.0% | |
| AACCATTCGATGGTGAATTA+AGG | - | chr2_1:68500836-68500855 | None:intergenic | 35.0% | |
| ! | AATTCACCATCGAATGGTTT+TGG | + | chr2_1:68500837-68500856 | Msa0220300:CDS | 35.0% |
| TTGTTTCCAAAACCATTCGA+TGG | - | chr2_1:68500846-68500865 | None:intergenic | 35.0% | |
| TTAGACAAACAAGTGTACCT+CGG | - | chr2_1:68500970-68500989 | None:intergenic | 35.0% | |
| !! | ATGCTCTAAGACAAGATAAG+TGG | + | chr2_1:68501132-68501151 | Msa0220300:intron | 35.0% |
| AGAGCAATTTGATATGTGTC+TGG | + | chr2_1:68501256-68501275 | Msa0220300:intron | 35.0% | |
| GAGCAATTTGATATGTGTCT+GGG | + | chr2_1:68501257-68501276 | Msa0220300:intron | 35.0% | |
| AATTTGATATGTGTCTGGGA+TGG | + | chr2_1:68501261-68501280 | Msa0220300:CDS | 35.0% | |
| ! | CGTAACAGTATTTCTGAACT+TGG | - | chr2_1:68501292-68501311 | None:intergenic | 35.0% |
| ! | TTTTTCACCTGCAGTAAGTT+TGG | + | chr2_1:68501898-68501917 | Msa0220300:intron | 35.0% |
| ! | TGGGTAACGTTGTGTAATTT+TGG | + | chr2_1:68501947-68501966 | Msa0220300:intron | 35.0% |
| TCATGGTTAATTATGTTCGG+TGG | - | chr2_1:68502083-68502102 | None:intergenic | 35.0% | |
| GCTAAACATCGTGGTTAATT+TGG | + | chr2_1:68502203-68502222 | Msa0220300:intron | 35.0% | |
| CTATGAAGGCTTCATTCATA+TGG | + | chr2_1:68502347-68502366 | Msa0220300:intron | 35.0% | |
| GGAAAAATTTCTCTGTCAAC+AGG | + | chr2_1:68502368-68502387 | Msa0220300:intron | 35.0% | |
| TGCTGCAATACTATCAGAAT+TGG | + | chr2_1:68502401-68502420 | Msa0220300:CDS | 35.0% | |
| CATGTTATAGGTTTGATCTG+AGG | - | chr2_1:68502836-68502855 | None:intergenic | 35.0% | |
| GAAACCTTCTTTGTTGACGA+GGG | - | chr2_1:68500026-68500045 | None:intergenic | 40.0% | |
| AGAAACCTTCTTTGTTGACG+AGG | - | chr2_1:68500027-68500046 | None:intergenic | 40.0% | |
| ! | AATCGATGACTTGCGTATGA+CGG | - | chr2_1:68500100-68500119 | None:intergenic | 40.0% |
| ! | TCATACGCAAGTCATCGATT+CGG | + | chr2_1:68500100-68500119 | Msa0220300:CDS | 40.0% |
| GATCAAACAAGAGCAATTGG+TGG | + | chr2_1:68500345-68500364 | Msa0220300:CDS | 40.0% | |
| CGAATCCAACAATGAAGCTT+TGG | + | chr2_1:68500521-68500540 | Msa0220300:CDS | 40.0% | |
| AGAAGCCAAAGCTTCATTGT+TGG | - | chr2_1:68500529-68500548 | None:intergenic | 40.0% | |
| TGAGTGATGCAACATTGAGA+AGG | + | chr2_1:68500589-68500608 | Msa0220300:CDS | 40.0% | |
| GAGTGATGCAACATTGAGAA+GGG | + | chr2_1:68500590-68500609 | Msa0220300:CDS | 40.0% | |
| GGAGCTTCTGATTCTAACAT+TGG | + | chr2_1:68500621-68500640 | Msa0220300:CDS | 40.0% | |
| AGAGGACTAATTCGATTACG+GGG | + | chr2_1:68500679-68500698 | Msa0220300:CDS | 40.0% | |
| ACAAGAGTTCGAAATCACAG+TGG | + | chr2_1:68500703-68500722 | Msa0220300:CDS | 40.0% | |
| CAAGAGTTCGAAATCACAGT+GGG | + | chr2_1:68500704-68500723 | Msa0220300:CDS | 40.0% | |
| AGAATGCAAACACTCTTTGG+TGG | - | chr2_1:68501532-68501551 | None:intergenic | 40.0% | |
| AGCAGAATGCAAACACTCTT+TGG | - | chr2_1:68501535-68501554 | None:intergenic | 40.0% | |
| CTAAGTGATCATGATAGGGA+TGG | + | chr2_1:68501762-68501781 | Msa0220300:intron | 40.0% | |
| ! | TACATCCATTGCTATTCGTC+AGG | + | chr2_1:68501835-68501854 | Msa0220300:CDS | 40.0% |
| TGTGTAACCAAACTTACTGC+AGG | - | chr2_1:68501908-68501927 | None:intergenic | 40.0% | |
| ! | TTATGTTCGGTGGATGGTTA+TGG | - | chr2_1:68502073-68502092 | None:intergenic | 40.0% |
| ! | GGTTAATTATGTTCGGTGGA+TGG | - | chr2_1:68502079-68502098 | None:intergenic | 40.0% |
| AACGCAATTTGGATAGTCAG+TGG | + | chr2_1:68502138-68502157 | Msa0220300:intron | 40.0% | |
| GCTAATGAAGCTAAACATCG+TGG | + | chr2_1:68502194-68502213 | Msa0220300:intron | 40.0% | |
| GCCTGGTTCAATTTGAAGAT+TGG | + | chr2_1:68502623-68502642 | Msa0220300:CDS | 40.0% | |
| GCCAATCTTCAAATTGAACC+AGG | - | chr2_1:68502627-68502646 | None:intergenic | 40.0% | |
| GCAAAGGAAATATCAACTGC+AGG | + | chr2_1:68502645-68502664 | Msa0220300:CDS | 40.0% | |
| AACTGCAGGATTTACTGCTA+GGG | + | chr2_1:68502659-68502678 | Msa0220300:CDS | 40.0% | |
| ACTGCTAGGGATTACTTCAT+AGG | + | chr2_1:68502672-68502691 | Msa0220300:CDS | 40.0% | |
| TGAACCCTCGTCAACAAAGA+AGG | + | chr2_1:68500019-68500038 | Msa0220300:CDS | 45.0% | |
| ! | TTCAGTGGATTCTATGGAGG+TGG | - | chr2_1:68500061-68500080 | None:intergenic | 45.0% |
| ! | ACAAGAGCAATTGGTGGTTC+TGG | + | chr2_1:68500351-68500370 | Msa0220300:CDS | 45.0% |
| ! | AATGGTTCAGGCATTGTTCC+AGG | + | chr2_1:68500429-68500448 | Msa0220300:CDS | 45.0% |
| ! | TGTTCCAGGAAGGTTTTCCT+TGG | + | chr2_1:68500443-68500462 | Msa0220300:CDS | 45.0% |
| TCATCCAAGGAAAACCTTCC+TGG | - | chr2_1:68500450-68500469 | None:intergenic | 45.0% | |
| ! | CAATGAAGCTTTGGCTTCTC+CGG | + | chr2_1:68500530-68500549 | Msa0220300:CDS | 45.0% |
| GCATCACTCATCAACCTTGT+AGG | - | chr2_1:68500579-68500598 | None:intergenic | 45.0% | |
| ACATTGAGAAGGGCTAGAAG+AGG | + | chr2_1:68500600-68500619 | Msa0220300:CDS | 45.0% | |
| CGTTGAAACCGATGATGAAG+AGG | + | chr2_1:68500661-68500680 | Msa0220300:CDS | 45.0% | |
| !! | AGAGTTTTCAAGCCCCACAA+AGG | + | chr2_1:68500746-68500765 | Msa0220300:CDS | 45.0% |
| TCAACTCCTTTCGCCTTTGT+GGG | - | chr2_1:68500762-68500781 | None:intergenic | 45.0% | |
| TTCAACTCCTTTCGCCTTTG+TGG | - | chr2_1:68500763-68500782 | None:intergenic | 45.0% | |
| GGCCTTAATTCACCATCGAA+TGG | + | chr2_1:68500831-68500850 | Msa0220300:CDS | 45.0% | |
| ATTGGAAGCTTGGGGAAGTA+TGG | + | chr2_1:68501479-68501498 | Msa0220300:CDS | 45.0% | |
| ! | AAGCTTGGGGAAGTATGGAA+AGG | + | chr2_1:68501484-68501503 | Msa0220300:CDS | 45.0% |
| ! | TGTGTGCAGAGTTCCTCTTT+TGG | + | chr2_1:68501554-68501573 | Msa0220300:CDS | 45.0% |
| ! | TGCAGAGTTCCTCTTTTGGA+AGG | + | chr2_1:68501558-68501577 | Msa0220300:CDS | 45.0% |
| !!! | TCCTCTTTTGGAAGGTGCTA+AGG | + | chr2_1:68501566-68501585 | Msa0220300:CDS | 45.0% |
| ACCTTAGCACCTTCCAAAAG+AGG | - | chr2_1:68501570-68501589 | None:intergenic | 45.0% | |
| CAACTGCAGGATTTACTGCT+AGG | + | chr2_1:68502658-68502677 | Msa0220300:CDS | 45.0% | |
| CTTTGTTGACGAGGGTTCAC+CGG | - | chr2_1:68500018-68500037 | None:intergenic | 50.0% | |
| GTGGATTCTATGGAGGTGGA+AGG | - | chr2_1:68500057-68500076 | None:intergenic | 50.0% | |
| GGAAGGGGAAGGAAATTCAG+TGG | - | chr2_1:68500076-68500095 | None:intergenic | 50.0% | |
| ! | ACTTGCGTATGACGGAGGAA+GGG | - | chr2_1:68500092-68500111 | None:intergenic | 50.0% |
| TGTGTCTCCTATCGTCTTCC+TGG | - | chr2_1:68500128-68500147 | None:intergenic | 50.0% | |
| CTGTTCTACGTCGTCAACTC+TGG | + | chr2_1:68500166-68500185 | Msa0220300:CDS | 50.0% | |
| !! | GGTGGTTCTGGAAGATTCAC+AGG | + | chr2_1:68500363-68500382 | Msa0220300:CDS | 50.0% |
| ! | GTTCAGGCATTGTTCCAGGA+AGG | + | chr2_1:68500433-68500452 | Msa0220300:CDS | 50.0% |
| TTCTCCGGCAAGAAAACCAG+TGG | + | chr2_1:68500545-68500564 | Msa0220300:CDS | 50.0% | |
| !!! | TCCACCACTGGTTTTCTTGC+CGG | - | chr2_1:68500552-68500571 | None:intergenic | 50.0% |
| CTTGTAGGAACTTCCACCAC+TGG | - | chr2_1:68500564-68500583 | None:intergenic | 50.0% | |
| ! | CAGTGGTGGAAGTTCCTACA+AGG | + | chr2_1:68500562-68500581 | Msa0220300:CDS | 50.0% |
| CTTGAAAACTCTGACCTCCC+TGG | - | chr2_1:68500738-68500757 | None:intergenic | 50.0% | |
| CAACTCCTTTCGCCTTTGTG+GGG | - | chr2_1:68500761-68500780 | None:intergenic | 50.0% | |
| AAACATTTCTCGCCACACCG+AGG | + | chr2_1:68500950-68500969 | Msa0220300:CDS | 50.0% | |
| CAAACAAGTGTACCTCGGTG+TGG | - | chr2_1:68500965-68500984 | None:intergenic | 50.0% | |
| AGAGGCCTGACGAATAGCAA+TGG | - | chr2_1:68501843-68501862 | None:intergenic | 50.0% | |
| AATGGAAGCTGCGAGATCAG+AGG | - | chr2_1:68501861-68501880 | None:intergenic | 50.0% | |
| AAGCAGTGTAAAGTGCAGCC+TGG | + | chr2_1:68502606-68502625 | Msa0220300:CDS | 50.0% | |
| ! | GAAGGCGCGAAACACTTCTC+CGG | + | chr2_1:68499996-68500015 | Msa0220300:CDS | 55.0% |
| TCTATGGAGGTGGAAGGCGA+GGG | - | chr2_1:68500051-68500070 | None:intergenic | 55.0% | |
| TTCTATGGAGGTGGAAGGCG+AGG | - | chr2_1:68500052-68500071 | None:intergenic | 55.0% | |
| ! | CTTGCGTATGACGGAGGAAG+GGG | - | chr2_1:68500091-68500110 | None:intergenic | 55.0% |
| ! | GACTTGCGTATGACGGAGGA+AGG | - | chr2_1:68500093-68500112 | None:intergenic | 55.0% |
| ! | CGATGACTTGCGTATGACGG+AGG | - | chr2_1:68500097-68500116 | None:intergenic | 55.0% |
| !! | CAAGTCATCGATTCGGAGCC+AGG | + | chr2_1:68500107-68500126 | Msa0220300:CDS | 55.0% |
| TTCGGAGCCAGGAAGACGAT+AGG | + | chr2_1:68500118-68500137 | Msa0220300:CDS | 55.0% | |
| TCCGGCAAGAAAACCAGTGG+TGG | + | chr2_1:68500548-68500567 | Msa0220300:CDS | 55.0% | |
| ! | TCACAGTGGGCTTTGTCACC+AGG | + | chr2_1:68500717-68500736 | Msa0220300:CDS | 55.0% |
| ! | CACAGTGGGCTTTGTCACCA+GGG | + | chr2_1:68500718-68500737 | Msa0220300:CDS | 55.0% |
| TCAAGCCCCACAAAGGCGAA+AGG | + | chr2_1:68500753-68500772 | Msa0220300:CDS | 55.0% | |
| ! | CGTATGACGGAGGAAGGGGA+AGG | - | chr2_1:68500087-68500106 | None:intergenic | 60.0% |
| ! | AGTGGGCTTTGTCACCAGGG+AGG | + | chr2_1:68500721-68500740 | Msa0220300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 68499994 | 68502878 | 68499994 | ID=Msa0220300;Name=Msa0220300 |
| chr2_1 | mRNA | 68499994 | 68502878 | 68499994 | ID=Msa0220300-mRNA-1;Parent=Msa0220300;Name=Msa0220300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.6|0.5|1|1|1|6|185|502 |
| chr2_1 | exon | 68499994 | 68500971 | 68499994 | ID=Msa0220300-mRNA-1:exon:19381;Parent=Msa0220300-mRNA-1 |
| chr2_1 | exon | 68501258 | 68501377 | 68501258 | ID=Msa0220300-mRNA-1:exon:19382;Parent=Msa0220300-mRNA-1 |
| chr2_1 | exon | 68501471 | 68501587 | 68501471 | ID=Msa0220300-mRNA-1:exon:19383;Parent=Msa0220300-mRNA-1 |
| chr2_1 | exon | 68501821 | 68501910 | 68501821 | ID=Msa0220300-mRNA-1:exon:19384;Parent=Msa0220300-mRNA-1 |
| chr2_1 | exon | 68502390 | 68502497 | 68502390 | ID=Msa0220300-mRNA-1:exon:19385;Parent=Msa0220300-mRNA-1 |
| chr2_1 | exon | 68502598 | 68502878 | 68502598 | ID=Msa0220300-mRNA-1:exon:19386;Parent=Msa0220300-mRNA-1 |
| chr2_1 | CDS | 68499994 | 68500971 | 68499994 | ID=Msa0220300-mRNA-1:cds;Parent=Msa0220300-mRNA-1 |
| chr2_1 | CDS | 68501258 | 68501377 | 68501258 | ID=Msa0220300-mRNA-1:cds;Parent=Msa0220300-mRNA-1 |
| chr2_1 | CDS | 68501471 | 68501587 | 68501471 | ID=Msa0220300-mRNA-1:cds;Parent=Msa0220300-mRNA-1 |
| chr2_1 | CDS | 68501821 | 68501910 | 68501821 | ID=Msa0220300-mRNA-1:cds;Parent=Msa0220300-mRNA-1 |
| chr2_1 | CDS | 68502390 | 68502497 | 68502390 | ID=Msa0220300-mRNA-1:cds;Parent=Msa0220300-mRNA-1 |
| chr2_1 | CDS | 68502598 | 68502693 | 68502598 | ID=Msa0220300-mRNA-1:cds;Parent=Msa0220300-mRNA-1 |
| chr2_1 | three_prime_UTR | 68502694 | 68502878 | 68502694 | ID=Msa0220300-mRNA-1:three_prime_utr;Parent=Msa0220300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
