AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0988480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0988480 MtrunA17_Chr6g0468511 75.891 477 28 2 1 390 1 477 0.0 670
Msa0988480 MtrunA17_Chr6g0468521 69.602 477 58 2 1 390 1 477 0.0 636
Msa0988480 MtrunA17_Chr6g0468531 66.109 478 74 3 1 390 1 478 0.0 593
Msa0988480 MtrunA17_Chr1g0202761 40.994 483 187 5 2 386 4 486 3.81e-118 352
Msa0988480 MtrunA17_Chr7g0248051 39.565 460 186 5 11 380 50 507 1.24e-103 315
Msa0988480 MtrunA17_Chr7g0254521 33.333 447 209 5 29 386 29 475 1.15e-76 245
Msa0988480 MtrunA17_Chr3g0132531 32.981 473 226 6 5 386 19 491 3.19e-75 242
Msa0988480 MtrunA17_Chr8g0368001 30.128 468 235 6 10 386 28 494 7.67e-75 241
Msa0988480 MtrunA17_Chr5g0412541 31.718 454 220 5 23 386 28 481 1.47e-74 239
Msa0988480 MtrunA17_Chr5g0412771 32.976 467 223 5 10 386 34 500 5.94e-74 239
Msa0988480 MtrunA17_Chr7g0254511 30.973 452 224 4 23 386 22 473 3.33e-72 233
Msa0988480 MtrunA17_Chr1g0154441 34.456 386 165 3 89 386 1 386 1.39e-67 219
Msa0988480 MtrunA17_Chr2g0322671 30.649 447 220 5 30 386 51 497 3.79e-65 216
Msa0988480 MtrunA17_Chr4g0024501 30.061 489 238 7 2 386 21 509 2.05e-64 214
Msa0988480 MtrunA17_Chr5g0412571 32.921 404 182 5 76 390 27 430 4.89e-63 208
Msa0988480 MtrunA17_Chr7g0254531 32.383 386 173 4 89 386 1 386 5.82e-62 204
Msa0988480 MtrunA17_Chr6g0460541 33.420 386 170 4 88 386 4 389 8.37e-59 196
Msa0988480 MtrunA17_Chr2g0288281 29.716 387 183 4 89 386 1 387 2.10e-56 189
Msa0988480 MtrunA17_Chr5g0442331 28.444 450 231 5 25 384 41 489 1.13e-53 185
Msa0988480 MtrunA17_Chr3g0132541 30.516 426 231 9 2 378 13 422 5.37e-53 182
Msa0988480 MtrunA17_Chr6g0483381 28.092 477 241 10 1 383 3 471 6.52e-52 180
Msa0988480 MtrunA17_Chr6g0483361 28.025 471 238 10 6 383 7 469 2.64e-49 173
Msa0988480 MtrunA17_Chr6g0477961 29.032 434 216 8 42 383 38 471 2.26e-46 165
Msa0988480 MtrunA17_Chr1g0208791 27.406 478 252 8 1 384 10 486 2.30e-44 160
Msa0988480 MtrunA17_Chr2g0317131 28.785 469 235 7 2 374 11 476 2.79e-44 160
Msa0988480 MtrunA17_Chr8g0392601 25.607 453 239 6 22 384 11 455 5.22e-44 159
Msa0988480 MtrunA17_Chr1g0208891 26.882 465 246 6 13 383 2 466 2.34e-42 154
Msa0988480 MtrunA17_Chr1g0208821 28.151 476 249 8 1 383 8 483 2.84e-42 154
Msa0988480 MtrunA17_Chr2g0317161 30.357 448 212 9 18 374 26 464 4.76e-42 154
Msa0988480 MtrunA17_Chr6g0483351 30.026 383 171 7 89 377 1 380 4.51e-41 150
Msa0988480 MtrunA17_Chr6g0483341 26.991 452 231 8 23 383 41 484 5.40e-41 151
Msa0988480 MtrunA17_Chr2g0317171 28.390 472 238 7 1 374 1 470 2.87e-40 149
Msa0988480 MtrunA17_Chr6g0483331 26.991 452 231 7 23 383 12 455 6.69e-40 147
Msa0988480 MtrunA17_Chr7g0254501 30.741 270 142 1 162 386 32 301 2.94e-38 140
Msa0988480 MtrunA17_Chr2g0317221 31.117 376 170 5 88 374 9 384 6.67e-38 141
Msa0988480 MtrunA17_Chr6g0483161 29.167 360 185 4 88 377 2 361 1.74e-37 139
Msa0988480 MtrunA17_Chr7g0251331 25.778 450 244 6 24 383 19 468 3.44e-37 140
Msa0988480 MtrunA17_Chr8g0364751 43.949 157 88 0 228 384 20 176 8.93e-37 132
Msa0988480 MtrunA17_Chr6g0460531 32.558 258 127 5 14 224 4 261 3.83e-36 132
Msa0988480 MtrunA17_Chr2g0317151 29.095 464 230 8 2 374 11 466 3.59e-35 135
Msa0988480 MtrunA17_Chr7g0251321 27.763 371 186 6 89 383 1 365 8.75e-35 132
Msa0988480 MtrunA17_Chr5g0397991 24.359 468 258 8 1 378 41 502 3.14e-32 127
Msa0988480 MtrunA17_Chr1g0203791 23.160 462 263 5 4 375 39 498 3.77e-30 121
Msa0988480 MtrunA17_Chr5g0440661 26.100 341 152 5 89 366 1 304 4.48e-30 117
Msa0988480 MtrunA17_Chr6g0460521 39.634 164 99 0 227 390 51 214 7.11e-29 112
Msa0988480 MtrunA17_Chr1g0208881 35.484 155 100 0 229 383 313 467 2.81e-27 112
Msa0988480 MtrunA17_Chr1g0208881 35.294 153 94 2 13 162 7 157 1.84e-15 77.8
Msa0988480 MtrunA17_Chr6g0473701 24.027 437 242 5 30 376 127 563 4.86e-27 112
Msa0988480 MtrunA17_Chr6g0449061 30.968 155 107 0 229 383 319 473 3.49e-21 95.1
Msa0988480 MtrunA17_Chr6g0449061 29.655 145 100 2 20 162 19 163 7.31e-12 66.6
Msa0988480 MtrunA17_Chr6g0483221 27.097 155 113 0 222 376 1 155 1.31e-17 80.1
Msa0988480 MtrunA17_Chr3g0140931 28.758 153 109 0 229 381 339 491 2.52e-17 83.6
Msa0988480 MtrunA17_Chr3g0140931 32.836 134 89 1 32 164 52 185 1.92e-12 68.6
Msa0988480 MtrunA17_Chr5g0428251 27.439 164 112 1 215 378 336 492 1.10e-16 81.6
Msa0988480 MtrunA17_Chr5g0428251 32.727 165 101 4 6 160 21 185 6.41e-14 73.2
Msa0988480 MtrunA17_Chr8g0364761 25.794 252 131 6 25 226 48 293 1.44e-16 80.1
Msa0988480 MtrunA17_Chr6g0483264 27.326 172 117 1 220 383 33 204 2.15e-16 77.8
Msa0988480 MtrunA17_Chr6g0483261 27.160 162 118 0 222 383 1 162 6.73e-16 75.5
Msa0988480 MtrunA17_Chr7g0254491 34.513 113 67 2 5 116 10 116 3.30e-15 71.6
Msa0988480 MtrunA17_Chr6g0483241 32.044 181 79 3 88 224 2 182 1.70e-13 68.6
Msa0988480 MtrunA17_Chr6g0487091 26.974 152 107 2 229 378 238 387 1.68e-12 68.6
Msa0988480 MtrunA17_Chr6g0467321 27.703 148 106 1 229 375 338 485 1.93e-11 65.5
Msa0988480 MtrunA17_Chr6g0467321 25.466 161 107 3 13 160 12 172 9.09e-11 63.5
Msa0988480 MtrunA17_Chr2g0295631 25.170 147 110 0 229 375 324 470 6.62e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0988480 AT4G00350.1 40.299 469 192 3 6 386 62 530 1.84e-117 352
Msa0988480 AT4G25640.1 42.251 471 184 3 4 386 6 476 4.25e-111 334
Msa0988480 AT4G25640.2 42.161 472 185 3 3 386 5 476 1.21e-110 334
Msa0988480 AT4G25640.3 41.299 431 165 3 3 345 5 435 9.95e-98 299
Msa0988480 AT1G47530.1 34.831 445 201 4 31 386 34 478 1.54e-85 268
Msa0988480 AT1G12950.1 32.051 468 228 5 9 386 43 510 1.99e-79 253
Msa0988480 AT1G23300.1 31.897 464 227 4 12 386 24 487 3.89e-78 250
Msa0988480 AT3G26590.1 32.189 466 227 4 10 386 23 488 4.80e-78 249
Msa0988480 AT5G38030.1 31.224 474 235 5 2 386 17 488 1.03e-77 248
Msa0988480 AT5G65380.1 32.842 475 223 8 2 386 13 481 6.42e-76 243
Msa0988480 AT1G47530.2 36.010 386 159 3 89 386 1 386 5.76e-74 236
Msa0988480 AT1G61890.1 30.208 480 235 8 6 386 13 491 4.98e-71 231
Msa0988480 AT1G33110.1 31.646 474 233 7 3 387 9 480 2.23e-70 229
Msa0988480 AT1G33100.1 31.992 472 226 6 5 387 12 477 2.38e-70 229
Msa0988480 AT5G44050.1 32.211 475 226 6 2 386 16 484 4.42e-70 228
Msa0988480 AT1G11670.1 30.722 485 235 8 1 386 12 494 6.97e-70 228
Msa0988480 AT1G33080.1 31.315 479 230 8 3 388 9 481 2.44e-68 224
Msa0988480 AT3G26590.2 33.679 386 168 3 89 386 1 386 3.45e-67 218
Msa0988480 AT1G61890.2 30.149 471 229 8 6 377 13 482 3.46e-67 221
Msa0988480 AT1G33090.1 31.013 474 236 6 3 387 9 480 5.51e-67 220
Msa0988480 AT1G33080.2 31.692 467 220 8 3 376 9 469 1.35e-65 216
Msa0988480 AT3G21690.1 30.337 445 220 5 32 386 52 496 8.22e-65 215
Msa0988480 AT4G21910.3 28.953 487 244 6 1 386 13 498 1.62e-64 214
Msa0988480 AT4G21910.1 28.953 487 244 6 1 386 13 498 1.62e-64 214
Msa0988480 AT4G21910.2 29.437 462 234 4 17 386 39 500 4.52e-64 213
Msa0988480 AT4G21910.4 29.437 462 234 4 17 386 39 500 4.52e-64 213
Msa0988480 AT3G03620.2 30.983 468 226 6 8 386 21 480 1.05e-63 212
Msa0988480 AT3G03620.1 30.983 468 226 6 8 386 21 480 1.05e-63 212
Msa0988480 AT4G21903.1 30.000 420 205 4 56 386 77 496 2.31e-61 206
Msa0988480 AT5G10420.1 32.456 456 218 6 25 390 31 486 2.24e-60 203
Msa0988480 AT3G59030.1 29.605 456 230 5 25 390 45 499 1.56e-58 198
Msa0988480 AT5G17700.2 30.335 478 239 7 1 389 8 480 5.28e-58 197
Msa0988480 AT5G17700.1 30.335 478 239 7 1 389 8 480 5.28e-58 197
Msa0988480 AT4G21903.2 30.000 410 198 4 56 376 77 486 3.24e-57 195
Msa0988480 AT1G61890.3 29.318 440 211 8 6 346 13 451 8.19e-56 191
Msa0988480 AT4G21903.3 29.199 387 185 4 89 386 1 387 2.22e-52 179
Msa0988480 AT2G34360.2 29.744 390 222 6 42 384 37 421 8.31e-49 171
Msa0988480 AT5G52450.1 27.233 459 233 9 18 384 19 468 2.47e-45 163
Msa0988480 AT2G34360.1 28.438 429 219 10 42 384 37 463 6.30e-45 162
Msa0988480 AT1G33110.2 29.471 397 189 7 3 310 9 403 1.87e-43 156
Msa0988480 AT2G04040.1 25.370 473 258 6 1 383 1 468 9.80e-43 155
Msa0988480 AT1G73700.1 26.964 471 240 7 4 383 8 465 1.18e-40 150
Msa0988480 AT3G23560.1 27.097 465 247 8 2 374 7 471 1.75e-38 144
Msa0988480 AT1G71140.1 25.376 465 255 7 11 383 3 467 1.75e-38 144
Msa0988480 AT1G15150.1 24.788 472 258 9 8 385 6 474 3.72e-36 138
Msa0988480 AT1G15170.1 27.061 473 245 8 12 385 6 477 4.46e-36 137
Msa0988480 AT1G15160.1 25.591 465 249 8 15 385 13 474 4.88e-36 137
Msa0988480 AT3G23550.1 26.724 464 245 8 11 379 5 468 4.88e-36 137
Msa0988480 AT5G17700.3 27.778 396 192 7 1 307 8 398 1.35e-32 127
Msa0988480 AT1G15180.1 26.623 462 248 6 15 385 17 478 4.39e-32 126
Msa0988480 AT3G59030.2 24.933 373 189 5 25 307 45 416 2.11e-27 112
Msa0988480 AT5G19700.1 22.622 473 264 6 1 375 1 469 5.13e-25 107
Msa0988480 AT1G15170.2 26.036 338 161 5 137 385 21 358 2.21e-24 103
Msa0988480 AT4G29140.1 24.270 445 233 12 31 378 55 492 3.61e-24 104
Msa0988480 AT2G04080.1 29.268 164 116 0 220 383 305 468 1.94e-23 102
Msa0988480 AT2G04080.1 33.129 163 103 3 1 162 1 158 1.04e-18 88.2
Msa0988480 AT1G66760.3 33.553 152 101 0 229 380 187 338 3.36e-23 99.8
Msa0988480 AT2G04050.1 30.968 155 107 0 229 383 314 468 1.02e-22 100
Msa0988480 AT2G04050.1 37.879 132 81 1 32 162 27 158 4.27e-19 89.4
Msa0988480 AT1G66760.1 33.553 152 101 0 229 380 315 466 1.10e-22 99.8
Msa0988480 AT1G66760.1 32.530 166 97 4 1 162 5 159 8.30e-20 91.3
Msa0988480 AT1G66760.2 31.613 155 106 0 229 383 315 469 1.51e-22 99.4
Msa0988480 AT1G66760.2 32.530 166 97 4 1 162 5 159 7.81e-20 91.3
Msa0988480 AT1G15150.2 31.210 157 108 0 229 385 202 358 2.55e-22 97.8
Msa0988480 AT2G04080.2 29.747 158 111 0 220 377 305 462 6.75e-22 97.4
Msa0988480 AT2G04080.2 33.129 163 103 3 1 162 1 158 1.26e-18 87.8
Msa0988480 AT2G04070.1 30.968 155 107 0 229 383 314 468 1.11e-21 97.1
Msa0988480 AT2G04070.1 36.154 130 82 1 32 160 27 156 7.16e-18 85.5
Msa0988480 AT2G04100.1 29.012 162 115 0 228 389 316 477 4.06e-20 92.4
Msa0988480 AT2G04100.1 31.737 167 105 3 1 163 1 162 1.88e-17 84.3
Msa0988480 AT2G04066.1 27.820 133 96 0 251 383 31 163 4.15e-20 87.0
Msa0988480 AT1G66760.4 32.530 166 97 4 1 162 5 159 7.33e-20 90.9
Msa0988480 AT2G04100.2 30.667 150 104 0 228 377 316 465 2.13e-19 90.1
Msa0988480 AT2G04100.2 31.737 167 105 3 1 163 1 162 1.78e-17 84.3
Msa0988480 AT2G04090.1 29.677 155 109 0 229 383 317 471 2.20e-19 90.1
Msa0988480 AT2G04090.1 30.539 167 107 3 1 163 1 162 1.46e-16 81.6
Msa0988480 AT1G66780.1 31.447 159 101 2 229 383 322 476 3.35e-19 89.7
Msa0988480 AT1G66780.1 32.099 162 104 3 5 162 7 166 1.57e-14 75.5
Msa0988480 AT3G23560.2 23.869 398 211 8 2 307 7 404 2.76e-18 86.3
Msa0988480 AT1G64820.1 29.560 159 104 2 229 383 316 470 3.47e-18 86.7
Msa0988480 AT1G64820.1 33.333 129 85 1 35 162 32 160 1.05e-14 75.9
Msa0988480 AT1G58340.1 26.946 167 109 3 215 378 338 494 6.47e-14 73.6
Msa0988480 AT1G58340.1 30.872 149 101 2 13 160 40 187 1.42e-12 69.3
Msa0988480 AT4G23030.1 27.097 155 113 0 229 383 320 474 1.17e-12 69.7
Msa0988480 AT5G49130.1 30.534 131 90 1 31 160 25 155 3.07e-12 68.6
Msa0988480 AT1G71870.1 25.466 161 111 2 1 160 1 153 4.96e-12 67.8
Msa0988480 AT5G52050.1 26.220 164 114 1 215 378 321 477 1.83e-11 65.9
Msa0988480 AT5G52050.1 29.932 147 102 1 18 163 21 167 4.34e-11 64.7
Msa0988480 AT2G38510.1 23.333 150 115 0 229 378 294 443 2.33e-11 65.5

Find 92 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTTCAACCAGCATTT+AGG 0.132024 6_4:-42258446 Msa0988480:CDS
CTTTGTGGCTTAGGGGCTTT+GGG 0.145121 6_4:-42257658 Msa0988480:intron
GATTGTCTTGGATGGCATTT+AGG 0.156838 6_4:-42260461 Msa0988480:CDS
TTGGCATGTTATTACATTAT+TGG 0.167145 6_4:-42258488 Msa0988480:CDS
ATATATGATATTAATTTATA+AGG 0.187662 6_4:-42255984 Msa0988480:three_prime_UTR
GGATGGCATTTAGGGAATTA+TGG 0.195593 6_4:-42260452 Msa0988480:CDS
GATCAGCTATTTCTTGTTCT+TGG 0.197547 6_4:+42260760 None:intergenic
TCTTTGTGGCTTAGGGGCTT+TGG 0.198975 6_4:-42257659 Msa0988480:intron
ACCCCAATCTTAAAATTTCT+TGG 0.223798 6_4:-42260783 Msa0988480:CDS
TGCCACCAAGAATGAGTATT+TGG 0.240486 6_4:+42258842 None:intergenic
AGAACCAACTAGCCAAATTA+AGG 0.242129 6_4:+42255952 None:intergenic
CTTCTTTGTTTATTGATAAT+AGG 0.246417 6_4:-42255931 Msa0988480:three_prime_UTR
CAATCCATTCCATCCTTCTT+TGG 0.248321 6_4:+42260479 None:intergenic
AGTGAATTAGCATACTTTCT+TGG 0.258952 6_4:-42258711 Msa0988480:CDS
AGGGTATACATCCCTTAATT+TGG 0.295407 6_4:-42255964 Msa0988480:three_prime_UTR
GTAGAATCTCTAAACTGATA+TGG 0.321321 6_4:-42264968 Msa0988480:exon
ACACTTTGTGGCCAAGCTTA+TGG 0.321571 6_4:-42260903 Msa0988480:CDS
CTTCATCAGTGTATTTGATT+GGG 0.322121 6_4:-42260583 Msa0988480:intron
CAGCAAATCGAATGCAAATC+TGG 0.325933 6_4:-42256216 Msa0988480:CDS
AAACCAAGGTAAATTGCAAT+TGG 0.330518 6_4:+42258461 None:intergenic
GATGGCATTTAGGGAATTAT+GGG 0.335429 6_4:-42260451 Msa0988480:CDS
CAATTGCATCTATTCCTTGC+TGG 0.336100 6_4:-42264713 Msa0988480:intron
TCTTCATCAGTGTATTTGAT+TGG 0.340775 6_4:-42260584 Msa0988480:intron
CATCCCTTAATTTGGCTAGT+TGG 0.349026 6_4:-42255956 Msa0988480:three_prime_UTR
ATTGTCTTGGATGGCATTTA+GGG 0.356470 6_4:-42260460 Msa0988480:CDS
TTGGTTTCAACCAGCATTTA+GGG 0.362095 6_4:-42258445 Msa0988480:CDS
TCCATCTATGCTGGTCATCT+TGG 0.367435 6_4:-42264778 Msa0988480:CDS
ATGTATCATATCTACACTTT+TGG 0.370229 6_4:+42258740 None:intergenic
ATGCTAAGTCTTGGTTCATC+TGG 0.381879 6_4:-42260420 Msa0988480:CDS
GTATTTGATTGGGGAATGAT+AGG 0.382555 6_4:-42260573 Msa0988480:CDS
TCATTATTTGTAAGACCAAC+TGG 0.383090 6_4:-42257590 Msa0988480:CDS
AGCATCCAAATACTCATTCT+TGG 0.385529 6_4:-42258847 Msa0988480:CDS
TCCAAGATGACCAGCATAGA+TGG 0.405561 6_4:+42264777 None:intergenic
TATATGATATTAATTTATAA+GGG 0.408017 6_4:-42255983 Msa0988480:three_prime_UTR
CTTGGAAGTGAAAAGTTTGA+AGG 0.411941 6_4:-42264902 Msa0988480:CDS
GCATTGGTAATTTATGTCAT+TGG 0.414069 6_4:-42260507 Msa0988480:CDS
GGGGTTGCATATATATGAAT+AGG 0.423646 6_4:+42260801 None:intergenic
GATGAGACCTATTAATCTAA+TGG 0.431599 6_4:-42255803 Msa0988480:three_prime_UTR
ATCAAACATAATTACCTCCT+TGG 0.433492 6_4:+42257566 None:intergenic
ATAGGTGTGGTCATTGGATG+TGG 0.436144 6_4:-42258539 Msa0988480:intron
GTATTTATCTTCAAAGGTCA+TGG 0.442369 6_4:-42260857 Msa0988480:CDS
AGTGTTTCACAAACTATATC+AGG 0.454438 6_4:-42258669 Msa0988480:intron
TACTTCAGAAAATGATTACT+TGG 0.454904 6_4:-42264920 Msa0988480:CDS
ACTGCACTAGCAACACTTTG+TGG 0.456052 6_4:-42260915 Msa0988480:CDS
AATGAGTATTTGGATGCTCT+TGG 0.457837 6_4:+42258852 None:intergenic
TTGGTTCATCTGGAATGATC+TGG 0.462048 6_4:-42260410 Msa0988480:CDS
TGGAAGTTGAAGTGTTTGTA+AGG 0.463421 6_4:+42264797 None:intergenic
GTCATTGGTTGGTCCAAAGA+AGG 0.471708 6_4:-42260492 Msa0988480:CDS
GAATTTACAATGCTAAGTCT+TGG 0.474926 6_4:-42260429 Msa0988480:CDS
ATGTCTCAGTCTCTTCTCAT+TGG 0.479393 6_4:-42258819 Msa0988480:CDS
AACCAAGGTAAATTGCAATT+GGG 0.485625 6_4:+42258462 None:intergenic
TGGTAATTTATGTCATTGGT+TGG 0.487806 6_4:-42260503 Msa0988480:CDS
GTGGCTTAGGGGCTTTGGGG+AGG 0.492427 6_4:-42257654 Msa0988480:intron
GAACCAACTAGCCAAATTAA+GGG 0.493806 6_4:+42255953 None:intergenic
TATGGTTGGTTACATAAACT+TGG 0.494914 6_4:-42258507 Msa0988480:CDS
CTCCCAATTGCAATTTACCT+TGG 0.495308 6_4:-42258464 Msa0988480:CDS
TTTGTGGCTTAGGGGCTTTG+GGG 0.496275 6_4:-42257657 Msa0988480:intron
GTGCTGGTATTTATCTTCAA+AGG 0.497541 6_4:-42260863 Msa0988480:CDS
ATTGTCTTGCACCATAAGCT+TGG 0.501943 6_4:+42260892 None:intergenic
TTGTTTATTGATAATAGGCT+AGG 0.504442 6_4:-42255926 Msa0988480:three_prime_UTR
CAACCAGCATTTAGGGGTCA+AGG 0.506365 6_4:-42258438 Msa0988480:intron
GCAAGACAATTTCAAAGTGC+TGG 0.508370 6_4:-42260879 Msa0988480:CDS
CAAGAAATAGCTGATCTAGC+TGG 0.510621 6_4:-42260753 Msa0988480:CDS
TGGATGTGGATGGCAAGTTA+TGG 0.516739 6_4:-42258525 Msa0988480:CDS
AAGGATGGAATGGATTGTCT+TGG 0.523770 6_4:-42260473 Msa0988480:CDS
GCAATGGCAAGTAATATCTC+AGG 0.528753 6_4:-42260546 Msa0988480:CDS
GGAGTGAGGCAATCAAGATA+TGG 0.532624 6_4:-42264861 Msa0988480:CDS
TTCATCAGTGTATTTGATTG+GGG 0.536727 6_4:-42260582 Msa0988480:intron
ATACTTTCTTGGTATAAGCA+TGG 0.546309 6_4:-42258700 Msa0988480:CDS
AACAGTGAACACAAAGCCAC+TGG 0.557238 6_4:+42264826 None:intergenic
TGGTCCAAAGAAGGATGGAA+TGG 0.564378 6_4:-42260483 Msa0988480:CDS
ACTTCAACTTCCATCTATGC+TGG 0.567257 6_4:-42264787 Msa0988480:CDS
AATTACCTCCTTGGTCCAGT+TGG 0.569194 6_4:+42257575 None:intergenic
ATCCAAATACTCATTCTTGG+TGG 0.578330 6_4:-42258844 Msa0988480:CDS
CTAAATGCTGGTTGAAACCA+AGG 0.580017 6_4:+42258447 None:intergenic
ATACCTTGACCCCTAAATGC+TGG 0.585343 6_4:+42258435 None:intergenic
TGTGGATGGCAAGTTATGGT+TGG 0.586186 6_4:-42258521 Msa0988480:CDS
TTGGTTGGTCCAAAGAAGGA+TGG 0.593790 6_4:-42260488 Msa0988480:CDS
GTTCGTGTCTCTCATACACT+TGG 0.615372 6_4:-42258885 Msa0988480:CDS
GGGAATGATAGGTTTAGCAA+TGG 0.621656 6_4:-42260562 Msa0988480:CDS
ATGGAATGGATTGTCTTGGA+TGG 0.624219 6_4:-42260469 Msa0988480:CDS
TCTTACAAATAATGATTGTG+AGG 0.624984 6_4:+42257598 None:intergenic
GTGGTCATACATGTACACAT+TGG 0.641211 6_4:+42255724 None:intergenic
TGGTTTCAACCAGCATTTAG+GGG 0.642005 6_4:-42258444 Msa0988480:CDS
GTGTGGTCATTGGATGTGGA+TGG 0.652242 6_4:-42258535 Msa0988480:CDS
ATAGCAAAGGAAAACATGCA+GGG 0.653449 6_4:+42260708 None:intergenic
AAGATGCAAACTAACCAGCA+AGG 0.654580 6_4:+42264699 None:intergenic
TTGTAAGACCAACTGGACCA+AGG 0.662066 6_4:-42257583 Msa0988480:CDS
AGGCAAGAGTAGTATGCATG+TGG 0.668326 6_4:+42260821 None:intergenic
TGGCAAGTAATATCTCAGGA+TGG 0.670260 6_4:-42260542 Msa0988480:CDS
ATGGAAGATAGCACTTCCAG+TGG 0.698090 6_4:-42264842 Msa0988480:CDS
TAAGACCAACTGGACCAAGG+AGG 0.768425 6_4:-42257580 Msa0988480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTTTTTA+AGG + chr6_4:42259602-42259621 None:intergenic 0.0%
!! TATAAAAAATAAAAAATATT+AGG - chr6_4:42262681-42262700 Msa0988480:intron 0.0%
!!! TTTTATATAATTTTAATTTT+AGG - chr6_4:42263998-42264017 Msa0988480:intron 0.0%
!! TTAAAAAAAAAAAAAAATAA+AGG + chr6_4:42264329-42264348 None:intergenic 0.0%
!!! TTTTAAAAATATTAAGGTAT+GGG + chr6_4:42256479-42256498 None:intergenic 10.0%
!! TAAATAGAAAAATGATAAAA+AGG + chr6_4:42258286-42258305 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGGAA+AGG + chr6_4:42259597-42259616 None:intergenic 10.0%
!!! TATATATGTCATTTATATAT+TGG + chr6_4:42261363-42261382 None:intergenic 10.0%
!!! TTATTTACATTTTAATTTTG+AGG - chr6_4:42262211-42262230 Msa0988480:intron 10.0%
!!! TAAACTATTTTTTAAGTTTT+AGG - chr6_4:42262514-42262533 Msa0988480:intron 10.0%
!! ATGAAAATAAAAATAATACA+AGG + chr6_4:42263483-42263502 None:intergenic 10.0%
!! AAATTCCATTATAATTTAAT+AGG - chr6_4:42264195-42264214 Msa0988480:intron 10.0%
!! AATTCCATTATAATTTAATA+GGG - chr6_4:42264196-42264215 Msa0988480:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258669-42258688 Msa0988480:intron 100.0%
!! ATAAACATAATACAAAACTT+TGG + chr6_4:42256127-42256146 None:intergenic 15.0%
!! AATAGAATAATGAACATAAA+TGG + chr6_4:42256243-42256262 None:intergenic 15.0%
!! ATCACAAAAAAAAAAATAGT+TGG + chr6_4:42256381-42256400 None:intergenic 15.0%
!!! GTTTTAAAAATATTAAGGTA+TGG + chr6_4:42256480-42256499 None:intergenic 15.0%
!!! CAGTTGTTTTAAAAATATTA+AGG + chr6_4:42256485-42256504 None:intergenic 15.0%
!!! AAAATTCTTGAATCAATTTT+AGG - chr6_4:42256624-42256643 Msa0988480:intron 15.0%
!! TTAGAAAAATATCTAAAAGT+TGG + chr6_4:42256658-42256677 None:intergenic 15.0%
!! AATGATTAAAAGAAAGATAA+TGG - chr6_4:42257236-42257255 Msa0988480:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr6_4:42257270-42257289 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr6_4:42257269-42257288 Msa0988480:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr6_4:42257293-42257312 Msa0988480:intron 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG - chr6_4:42257395-42257414 Msa0988480:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+GGG - chr6_4:42257396-42257415 Msa0988480:intron 15.0%
!!! ATTTTTGGGTAATAATAATA+TGG + chr6_4:42257833-42257852 None:intergenic 15.0%
!! AAATATTATAAAGTTGTCTT+GGG + chr6_4:42257882-42257901 None:intergenic 15.0%
!! TAAATATTATAAAGTTGTCT+TGG + chr6_4:42257883-42257902 None:intergenic 15.0%
!! ATTAATTTACTGGTAATATA+AGG - chr6_4:42257929-42257948 Msa0988480:intron 15.0%
!!! GTAATATAAGGATATATTTT+TGG - chr6_4:42257941-42257960 Msa0988480:intron 15.0%
!!! TATATTTTTGGAAAATTCTA+TGG - chr6_4:42257953-42257972 Msa0988480:intron 15.0%
!!! TGTTTAATTTTGATTTAATC+AGG + chr6_4:42258130-42258149 None:intergenic 15.0%
!!! TTTAGGTTTTATTATGATTT+GGG + chr6_4:42258510-42258529 None:intergenic 15.0%
!!! ATTTAGGTTTTATTATGATT+TGG + chr6_4:42258511-42258530 None:intergenic 15.0%
!! AGTTTATGTTAAAATTCATA+TGG + chr6_4:42258615-42258634 None:intergenic 15.0%
!!! AAGTAATTAATATTTTGTAC+AGG - chr6_4:42258886-42258905 Msa0988480:CDS 15.0%
!!! AGTAATTAATATTTTGTACA+GGG - chr6_4:42258887-42258906 Msa0988480:CDS 15.0%
!! TTCATAACCTAATTTAATTA+AGG - chr6_4:42259106-42259125 Msa0988480:intron 15.0%
!! TCATAACCTAATTTAATTAA+GGG - chr6_4:42259107-42259126 Msa0988480:intron 15.0%
!! ATATATCCCTTAATTAAATT+AGG + chr6_4:42259116-42259135 None:intergenic 15.0%
!!! TCATATTTTTAAATACAAAC+TGG + chr6_4:42259647-42259666 None:intergenic 15.0%
!!! AGATTTTTTTTTTTAAGGAA+AGG + chr6_4:42259754-42259773 None:intergenic 15.0%
!!! ACAAGAGATTTTTTTTTTTA+AGG + chr6_4:42259759-42259778 None:intergenic 15.0%
!!! ATTCTAATTTTAAAGTTTCT+TGG - chr6_4:42260724-42260743 Msa0988480:CDS 15.0%
!! AAATACTAACAATTACATTT+AGG - chr6_4:42260874-42260893 Msa0988480:CDS 15.0%
!! AATACTAACAATTACATTTA+GGG - chr6_4:42260875-42260894 Msa0988480:CDS 15.0%
!! TTTCTTAAACAATAATCTTA+GGG - chr6_4:42260994-42261013 Msa0988480:intron 15.0%
!!! TTTAATGTTATTTCAATATG+AGG + chr6_4:42261339-42261358 None:intergenic 15.0%
!! TCAGTTATAAAATAAGAAAA+TGG - chr6_4:42261425-42261444 Msa0988480:intron 15.0%
!! CAGTTATAAAATAAGAAAAT+GGG - chr6_4:42261426-42261445 Msa0988480:intron 15.0%
!!! ATCCTTTTACATTATTTTTA+AGG - chr6_4:42261662-42261681 Msa0988480:intron 15.0%
!! TTCCTTAAAAATAATGTAAA+AGG + chr6_4:42261667-42261686 None:intergenic 15.0%
!! TGAACATTGAAAAAATTATA+TGG + chr6_4:42261841-42261860 None:intergenic 15.0%
!! TTAACATAAACACTTAATAT+AGG + chr6_4:42262442-42262461 None:intergenic 15.0%
!! CATAATTCATCTTTATAAAA+TGG - chr6_4:42262462-42262481 Msa0988480:intron 15.0%
!!! TATTTTACTTTTTTAAGAAG+AGG + chr6_4:42262707-42262726 None:intergenic 15.0%
!! ATATTGTATAATATATGTAG+AGG - chr6_4:42263318-42263337 Msa0988480:intron 15.0%
!! TATTGTATAATATATGTAGA+GGG - chr6_4:42263319-42263338 Msa0988480:intron 15.0%
!!! ACTTAAAAAACACAATTTTT+TGG - chr6_4:42263778-42263797 Msa0988480:intron 15.0%
!! AAAAAAAATAAAGGACAAAA+AGG + chr6_4:42264320-42264339 None:intergenic 15.0%
!! TTTAAATTAAAACAAGTTGT+AGG + chr6_4:42264367-42264386 None:intergenic 15.0%
!!! ATTTTAAATTAGTTCTCTTA+TGG + chr6_4:42264436-42264455 None:intergenic 15.0%
!!! AGTTTTGTATTATGTTTATG+TGG - chr6_4:42256128-42256147 Msa0988480:intron 20.0%
!!! GTTTTGTATTATGTTTATGT+GGG - chr6_4:42256129-42256148 Msa0988480:intron 20.0%
!!! TTTTAGTTATGTGTTATTCT+TGG - chr6_4:42256814-42256833 Msa0988480:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr6_4:42257279-42257298 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr6_4:42257356-42257375 Msa0988480:intron 20.0%
!! TATTATTACCCAAAAATTCT+TGG - chr6_4:42257836-42257855 Msa0988480:intron 20.0%
!! ATTATTACCCAAAAATTCTT+GGG - chr6_4:42257837-42257856 Msa0988480:intron 20.0%
!! TTGCTCAAAAATTAATTTAC+TGG - chr6_4:42257919-42257938 Msa0988480:intron 20.0%
!!! TATTTAGGTGAATATTTTTG+TGG + chr6_4:42258431-42258450 None:intergenic 20.0%
!!! TTAGGTTTTATTATGATTTG+GGG + chr6_4:42258509-42258528 None:intergenic 20.0%
!! TGAATATAGTGTTTGAATTT+GGG + chr6_4:42258554-42258573 None:intergenic 20.0%
!! ATGAATATAGTGTTTGAATT+TGG + chr6_4:42258555-42258574 None:intergenic 20.0%
!!! AGTAAAATTTAGTCTTACAA+TGG - chr6_4:42258925-42258944 Msa0988480:intron 20.0%
!!! CAAAATGACTTTTTCAAAAA+AGG - chr6_4:42259002-42259021 Msa0988480:intron 20.0%
!! AACATACATTAAAATATAGG+TGG + chr6_4:42259053-42259072 None:intergenic 20.0%
!! AGGAACATACATTAAAATAT+AGG + chr6_4:42259056-42259075 None:intergenic 20.0%
!!! GTCTATGTTTTTAAAATTGA+AGG - chr6_4:42259140-42259159 Msa0988480:intron 20.0%
!!! TTGAAGGTTAAATATGTTTT+TGG - chr6_4:42259156-42259175 Msa0988480:intron 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr6_4:42259248-42259267 Msa0988480:intron 20.0%
!!! TTGTTATTAACAAATGTTAC+TGG + chr6_4:42259797-42259816 None:intergenic 20.0%
!! TCATATGTAAAATTTCAGTT+TGG - chr6_4:42259836-42259855 Msa0988480:intron 20.0%
!!! TTGTTTTTACTCATACAAAA+TGG - chr6_4:42260163-42260182 Msa0988480:intron 20.0%
!! TTATACTTACCAAATTGAAT+AGG + chr6_4:42260470-42260489 None:intergenic 20.0%
!! ATTCAATACAAAAGTAACAT+TGG + chr6_4:42260537-42260556 None:intergenic 20.0%
!! AATGATTTGACAATTATGAT+TGG - chr6_4:42260654-42260673 Msa0988480:intron 20.0%
!! GACTATAAGTTAAACTAATT+AGG - chr6_4:42260850-42260869 Msa0988480:CDS 20.0%
!! GTTTCTTAAACAATAATCTT+AGG - chr6_4:42260993-42261012 Msa0988480:intron 20.0%
!! TAGATTGACAATAAATTCTA+AGG + chr6_4:42261162-42261181 None:intergenic 20.0%
!!! TTCTTATTTTATAACTGAGT+TGG + chr6_4:42261423-42261442 None:intergenic 20.0%
!!! ATTTATTGAGAAAAAAGTGT+AGG + chr6_4:42261762-42261781 None:intergenic 20.0%
!!! TTTACATTTTAATTTTGAGG+AGG - chr6_4:42262214-42262233 Msa0988480:intron 20.0%
!! TTTGAACTATTCATCTTAAA+AGG - chr6_4:42263348-42263367 Msa0988480:intron 20.0%
!!! AACTCATTTTTTGTTGAAAT+CGG - chr6_4:42263727-42263746 Msa0988480:intron 20.0%
!!! AAAACACAATTTTTTGGTAT+TGG - chr6_4:42263784-42263803 Msa0988480:intron 20.0%
!!! AAACACAATTTTTTGGTATT+GGG - chr6_4:42263785-42263804 Msa0988480:intron 20.0%
!! TAGTCCCTATTAAATTATAA+TGG + chr6_4:42264203-42264222 None:intergenic 20.0%
!! GTATTTCATAGTGTAATTTA+TGG - chr6_4:42264519-42264538 Msa0988480:intron 20.0%
!!! CTTCTTTGTTTATTGATAAT+AGG - chr6_4:42264850-42264869 Msa0988480:CDS 20.0%
!!! TTTTACACCATTAGATTAAT+AGG + chr6_4:42264988-42265007 None:intergenic 20.0%
!! ATATTAGTCTGAAAAACTTG+TGG - chr6_4:42255789-42255808 Msa0988480:three_prime_UTR 25.0%
! TACTTCAGAAAATGATTACT+TGG - chr6_4:42255861-42255880 Msa0988480:three_prime_UTR 25.0%
! ATTGAACTAACTAGACTTAT+GGG + chr6_4:42256759-42256778 None:intergenic 25.0%
!!! AACATTGAAGAGATTTTTTG+AGG + chr6_4:42256953-42256972 None:intergenic 25.0%
! CATAATGTGTATGAAGAAAA+GGG - chr6_4:42257790-42257809 Msa0988480:intron 25.0%
! ATACACAAATGCATTATGAT+TGG + chr6_4:42258021-42258040 None:intergenic 25.0%
! TGGGAAGAAAAAAAAGATAA+AGG + chr6_4:42258225-42258244 None:intergenic 25.0%
! GGAAGATAAATGACTAAAAT+GGG + chr6_4:42258244-42258263 None:intergenic 25.0%
! AGGAAGATAAATGACTAAAA+TGG + chr6_4:42258245-42258264 None:intergenic 25.0%
!! TTTGAGTTTAAGGAAAAAGA+TGG + chr6_4:42258484-42258503 None:intergenic 25.0%
!!! TTTCTGGGATTGTTAAATTT+AGG + chr6_4:42258527-42258546 None:intergenic 25.0%
! GAATATAGTGTTTGAATTTG+GGG + chr6_4:42258553-42258572 None:intergenic 25.0%
! TTATGAGTGTGGTAAATTTA+GGG - chr6_4:42258703-42258722 Msa0988480:CDS 25.0%
!! ATTTAGGGTTTATTGAGATT+TGG - chr6_4:42258718-42258737 Msa0988480:CDS 25.0%
!! TTTAGGGTTTATTGAGATTT+GGG - chr6_4:42258719-42258738 Msa0988480:CDS 25.0%
! TAAAATATAGGTGGTTTCTA+TGG + chr6_4:42259044-42259063 None:intergenic 25.0%
!!! AGTACACAATTTTTTTTGAG+AGG + chr6_4:42259076-42259095 None:intergenic 25.0%
! TACAAACTGGTTAATTGTTT+AGG + chr6_4:42259634-42259653 None:intergenic 25.0%
!! ATGTTACTGGTTAATTGTTT+AGG + chr6_4:42259784-42259803 None:intergenic 25.0%
!! ATGGATATTTTCTATTGCAT+TGG - chr6_4:42260258-42260277 Msa0988480:intron 25.0%
!! TTTAAAGTTTCTTGGTTTCT+TGG - chr6_4:42260732-42260751 Msa0988480:CDS 25.0%
! GCATTGTTTAAGCAATTTAA+AGG - chr6_4:42260897-42260916 Msa0988480:CDS 25.0%
! TTATTGTCAATCTAAGTACT+TGG - chr6_4:42261168-42261187 Msa0988480:intron 25.0%
! CTCAGCTAAAAAATTATAGA+AGG + chr6_4:42261533-42261552 None:intergenic 25.0%
!! ATGTATCATATCTACACTTT+TGG + chr6_4:42262044-42262063 None:intergenic 25.0%
!!! AATTTTGAGGAGGTTTTTAT+AGG - chr6_4:42262224-42262243 Msa0988480:intron 25.0%
! TTGGCATGTTATTACATTAT+TGG - chr6_4:42262293-42262312 Msa0988480:intron 25.0%
!! GAAACTTCATTCATGATTTT+GGG + chr6_4:42262408-42262427 None:intergenic 25.0%
!! AGAAACTTCATTCATGATTT+TGG + chr6_4:42262409-42262428 None:intergenic 25.0%
!! TCTTATCTCTTTTCAATATG+TGG - chr6_4:42262735-42262754 Msa0988480:intron 25.0%
!! ATTTTCCATTATCCTACATA+AGG - chr6_4:42262765-42262784 Msa0988480:intron 25.0%
! GATCTCTTTCAACATTATAT+GGG - chr6_4:42262809-42262828 Msa0988480:intron 25.0%
! ATCTCTTTCAACATTATATG+GGG - chr6_4:42262810-42262829 Msa0988480:intron 25.0%
!!! TATTTTTACTTCACTCAAAG+TGG - chr6_4:42262885-42262904 Msa0988480:intron 25.0%
! CACAAAGATGTAAATTTGTA+AGG + chr6_4:42263110-42263129 None:intergenic 25.0%
! CTTACAAATTTACATCTTTG+TGG - chr6_4:42263108-42263127 Msa0988480:intron 25.0%
! TCTTACAAATAATGATTGTG+AGG + chr6_4:42263186-42263205 None:intergenic 25.0%
! TAGACAAACTTAGACTTAAT+TGG + chr6_4:42263273-42263292 None:intergenic 25.0%
! AAGATGAATAGTTCAAATCT+CGG + chr6_4:42263345-42263364 None:intergenic 25.0%
!!! AAATCCAATTCCTTTTTTCA+AGG - chr6_4:42263836-42263855 Msa0988480:intron 25.0%
!! TTAAAAGCTCGTGATTTTAT+AGG - chr6_4:42264226-42264245 Msa0988480:intron 25.0%
!! TAAAAGCTCGTGATTTTATA+GGG - chr6_4:42264227-42264246 Msa0988480:intron 25.0%
! AATTTATGGAATATGATTGC+AGG - chr6_4:42264533-42264552 Msa0988480:intron 25.0%
! AAAAATCTGCAGATTGAAAT+TGG - chr6_4:42264762-42264781 Msa0988480:CDS 25.0%
!! TTGTTTATTGATAATAGGCT+AGG - chr6_4:42264855-42264874 Msa0988480:CDS 25.0%
GTAGAATCTCTAAACTGATA+TGG - chr6_4:42255813-42255832 Msa0988480:three_prime_UTR 30.0%
! AGGATGTTAAACATGTTTTG+TGG - chr6_4:42255899-42255918 Msa0988480:three_prime_UTR 30.0%
GTACAATATCCAATACGATA+CGG + chr6_4:42256525-42256544 None:intergenic 30.0%
CATTGAACTAACTAGACTTA+TGG + chr6_4:42256760-42256779 None:intergenic 30.0%
TATTCTTGGTCTAAAAAGCA+AGG - chr6_4:42256828-42256847 Msa0988480:intron 30.0%
ATTCTTGGTCTAAAAAGCAA+GGG - chr6_4:42256829-42256848 Msa0988480:intron 30.0%
GAGTTGTTTATTCTACTTCT+TGG - chr6_4:42256991-42257010 Msa0988480:intron 30.0%
TTGAATTACTTTGTCATGCA+GGG + chr6_4:42257061-42257080 None:intergenic 30.0%
TTTGAATTACTTTGTCATGC+AGG + chr6_4:42257062-42257081 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr6_4:42257187-42257206 None:intergenic 30.0%
AATAGAGAAGAGAGAGAAAA+TGG + chr6_4:42257668-42257687 None:intergenic 30.0%
! CCTTTTCTTCATACACATTA+TGG + chr6_4:42257792-42257811 None:intergenic 30.0%
CCATAATGTGTATGAAGAAA+AGG - chr6_4:42257789-42257808 Msa0988480:intron 30.0%
GTATTGTACATTTGCTCATA+CGG - chr6_4:42258070-42258089 Msa0988480:intron 30.0%
TTATCTTCCTTAAAATGCAC+AGG - chr6_4:42258255-42258274 Msa0988480:intron 30.0%
! AGCAATTTGAAGGTGTATTT+AGG + chr6_4:42258446-42258465 None:intergenic 30.0%
AGGATATTCTAGCAATTTGA+AGG + chr6_4:42258456-42258475 None:intergenic 30.0%
TAAGGAAAAAGATGGAAGTA+AGG + chr6_4:42258476-42258495 None:intergenic 30.0%
!!! ATTTGGGGATTTTGAGTTTA+AGG + chr6_4:42258494-42258513 None:intergenic 30.0%
! TTGAATTTGGGGATTTTTCT+GGG + chr6_4:42258542-42258561 None:intergenic 30.0%
! TTTGAATTTGGGGATTTTTC+TGG + chr6_4:42258543-42258562 None:intergenic 30.0%
ATTCATATGGTACAGATAGA+AGG + chr6_4:42258602-42258621 None:intergenic 30.0%
GTTATGAGTGTGGTAAATTT+AGG - chr6_4:42258702-42258721 Msa0988480:CDS 30.0%
TTAGGGTTTATTGAGATTTG+GGG - chr6_4:42258720-42258739 Msa0988480:CDS 30.0%
! AATGAACATGTTTCCGATTT+TGG - chr6_4:42258756-42258775 Msa0988480:CDS 30.0%
! ATGAACATGTTTCCGATTTT+GGG - chr6_4:42258757-42258776 Msa0988480:CDS 30.0%
GTATTTATCTTCAAAGGTCA+TGG - chr6_4:42259924-42259943 Msa0988480:intron 30.0%
ACCCCAATCTTAAAATTTCT+TGG - chr6_4:42259998-42260017 Msa0988480:intron 30.0%
!!! GCCAAGAAATTTTAAGATTG+GGG + chr6_4:42260002-42260021 None:intergenic 30.0%
!!! GGCCAAGAAATTTTAAGATT+GGG + chr6_4:42260003-42260022 None:intergenic 30.0%
!!! TGGCCAAGAAATTTTAAGAT+TGG + chr6_4:42260004-42260023 None:intergenic 30.0%
GCTTGAAGAAATTTCTTGAT+GGG + chr6_4:42260106-42260125 None:intergenic 30.0%
TGCTTGAAGAAATTTCTTGA+TGG + chr6_4:42260107-42260126 None:intergenic 30.0%
TCTTCATCAGTGTATTTGAT+TGG - chr6_4:42260197-42260216 Msa0988480:intron 30.0%
CTTCATCAGTGTATTTGATT+GGG - chr6_4:42260198-42260217 Msa0988480:intron 30.0%
TTCATCAGTGTATTTGATTG+GGG - chr6_4:42260199-42260218 Msa0988480:intron 30.0%
! GCATTGGTAATTTATGTCAT+TGG - chr6_4:42260274-42260293 Msa0988480:intron 30.0%
TGGTAATTTATGTCATTGGT+TGG - chr6_4:42260278-42260297 Msa0988480:intron 30.0%
GAATTTACAATGCTAAGTCT+TGG - chr6_4:42260352-42260371 Msa0988480:intron 30.0%
!!! TGCTTTTAGTCTTAATGTTC+AGG - chr6_4:42260778-42260797 Msa0988480:CDS 30.0%
!!! GCTTTTAGTCTTAATGTTCA+GGG - chr6_4:42260779-42260798 Msa0988480:CDS 30.0%
!!! TAGGGCACTTTTTAAAGTAA+TGG - chr6_4:42261012-42261031 Msa0988480:intron 30.0%
TTTAAGCAATTTCAAAGTGC+TGG - chr6_4:42261087-42261106 Msa0988480:intron 30.0%
! TCGTTTTGCTGATATGAAAT+TGG - chr6_4:42261291-42261310 Msa0988480:intron 30.0%
GTTAAAATCACGAGTTAACA+TGG + chr6_4:42261585-42261604 None:intergenic 30.0%
! TTGCAAGAGTTTTTGTCTTA+TGG + chr6_4:42261711-42261730 None:intergenic 30.0%
! TACACTTTTGGTAAAGATGA+TGG + chr6_4:42262032-42262051 None:intergenic 30.0%
AGTGAATTAGCATACTTTCT+TGG - chr6_4:42262070-42262089 Msa0988480:intron 30.0%
ATACTTTCTTGGTATAAGCA+TGG - chr6_4:42262081-42262100 Msa0988480:intron 30.0%
AGTGTTTCACAAACTATATC+AGG - chr6_4:42262112-42262131 Msa0988480:intron 30.0%
! TATGGTTGGTTACATAAACT+TGG - chr6_4:42262274-42262293 Msa0988480:intron 30.0%
AACCAAGGTAAATTGCAATT+GGG + chr6_4:42262322-42262341 None:intergenic 30.0%
AAACCAAGGTAAATTGCAAT+TGG + chr6_4:42262323-42262342 None:intergenic 30.0%
GCAAGTTTCATATTGAATAG+AGG + chr6_4:42262545-42262564 None:intergenic 30.0%
AATGTCCTTATGTAGGATAA+TGG + chr6_4:42262773-42262792 None:intergenic 30.0%
TTATGCAAATGTCCTTATGT+AGG + chr6_4:42262780-42262799 None:intergenic 30.0%
GACATTTGCATAAAATGAGA+TGG - chr6_4:42262787-42262806 Msa0988480:intron 30.0%
GGATCTCTTTCAACATTATA+TGG - chr6_4:42262808-42262827 Msa0988480:intron 30.0%
AATTTACATCTTTGTGGCTT+AGG - chr6_4:42263114-42263133 Msa0988480:intron 30.0%
ATTTACATCTTTGTGGCTTA+GGG - chr6_4:42263115-42263134 Msa0988480:intron 30.0%
TCATTATTTGTAAGACCAAC+TGG - chr6_4:42263191-42263210 Msa0988480:intron 30.0%
ATCAAACATAATTACCTCCT+TGG + chr6_4:42263218-42263237 None:intergenic 30.0%
AAAAAATTGCGATATATGCC+TGG - chr6_4:42263400-42263419 Msa0988480:intron 30.0%
CATTGCTAGAATAATTAACC+AGG + chr6_4:42263421-42263440 None:intergenic 30.0%
CGATTGTTAACTCGTAAATT+CGG - chr6_4:42263658-42263677 Msa0988480:intron 30.0%
TCAAAATTGTGTTAACTCGA+AGG - chr6_4:42263702-42263721 Msa0988480:intron 30.0%
TACCTAAGTAAAACGAGTTA+AGG - chr6_4:42264037-42264056 Msa0988480:intron 30.0%
! TACCTTAACTCGTTTTACTT+AGG + chr6_4:42264042-42264061 None:intergenic 30.0%
ATATGAACATTGTGATATGC+AGG - chr6_4:42264085-42264104 Msa0988480:intron 30.0%
TATGAACATTGTGATATGCA+GGG - chr6_4:42264086-42264105 Msa0988480:intron 30.0%
CAACGCTCAAAGTAAATAAT+TGG + chr6_4:42264136-42264155 None:intergenic 30.0%
TTTCTAACCATTATGCTACT+TGG - chr6_4:42264158-42264177 Msa0988480:intron 30.0%
AACAACTAACAACCTTCAAA+AGG - chr6_4:42264594-42264613 Msa0988480:intron 30.0%
GATGAGACCTATTAATCTAA+TGG - chr6_4:42264978-42264997 Msa0988480:five_prime_UTR 30.0%
! GTAAAGCTTTTGATCAGCAA+TGG + chr6_4:42255844-42255863 None:intergenic 35.0%
CTTGGAAGTGAAAAGTTTGA+AGG - chr6_4:42255879-42255898 Msa0988480:three_prime_UTR 35.0%
! TAAACATGTTTTGTGGAGTG+AGG - chr6_4:42255906-42255925 Msa0988480:three_prime_UTR 35.0%
! TGGAAGTTGAAGTGTTTGTA+AGG + chr6_4:42255987-42256006 None:intergenic 35.0%
! AAGCATGGGTACTTCTAAAA+CGG - chr6_4:42256159-42256178 Msa0988480:intron 35.0%
GAAACTATACAAGTCTCGAA+TGG + chr6_4:42256707-42256726 None:intergenic 35.0%
GTCTAGTTAGTTCAATGTAG+AGG - chr6_4:42256763-42256782 Msa0988480:intron 35.0%
AACAAGAGTAGAACTGTAGA+AGG - chr6_4:42256790-42256809 Msa0988480:intron 35.0%
ACAAGAGTAGAACTGTAGAA+GGG - chr6_4:42256791-42256810 Msa0988480:intron 35.0%
CTAAAAAGCAAGGGAATTAG+TGG - chr6_4:42256838-42256857 Msa0988480:intron 35.0%
GTAAACTAATAGTGACACCA+AGG - chr6_4:42256900-42256919 Msa0988480:intron 35.0%
! AGTTAGGATGTCTTTTTCCT+TGG + chr6_4:42256920-42256939 None:intergenic 35.0%
TTGGTCAGATAAGAAGTGAA+AGG - chr6_4:42257010-42257029 Msa0988480:intron 35.0%
TGAATTACTTTGTCATGCAG+GGG + chr6_4:42257060-42257079 None:intergenic 35.0%
CATTAGGCAATTGTGTTTCA+CGG - chr6_4:42257132-42257151 Msa0988480:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr6_4:42257318-42257337 Msa0988480:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr6_4:42257322-42257341 Msa0988480:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr6_4:42257386-42257405 Msa0988480:intron 35.0%
!!! GAGTTTTTTTGTGTGTGTGA+GGG + chr6_4:42257538-42257557 None:intergenic 35.0%
!!! TGAGTTTTTTTGTGTGTGTG+AGG + chr6_4:42257539-42257558 None:intergenic 35.0%
AAAACCAAAATTCTTGGTCC+TGG + chr6_4:42257597-42257616 None:intergenic 35.0%
!!! AGGACCAAGAATTTTGGTTT+TGG - chr6_4:42257596-42257615 Msa0988480:CDS 35.0%
GTGACCAAAACCAAAATTCT+TGG + chr6_4:42257603-42257622 None:intergenic 35.0%
ACATTATGGACCACTTTCAT+AGG + chr6_4:42257778-42257797 None:intergenic 35.0%
! CAGATTGCCCAAGAATTTTT+GGG + chr6_4:42257847-42257866 None:intergenic 35.0%
TATCACAATGCTTAGACCAT+TGG - chr6_4:42258639-42258658 Msa0988480:intron 35.0%
CTTAGACCATTGGTCAATTT+GGG - chr6_4:42258649-42258668 Msa0988480:intron 35.0%
TTAGACCATTGGTCAATTTG+GGG - chr6_4:42258650-42258669 Msa0988480:intron 35.0%
CTTCATCTTCTTCCCAAAAT+CGG + chr6_4:42258772-42258791 None:intergenic 35.0%
GTCAACTAATGTCTTTGTGA+AGG + chr6_4:42258952-42258971 None:intergenic 35.0%
GACATCAAGAACTATGCTAT+TGG - chr6_4:42258974-42258993 Msa0988480:intron 35.0%
GACTAAAAGTGAACTGATCT+TGG - chr6_4:42259538-42259557 Msa0988480:intron 35.0%
GACTAAAAGTGAACTGATCT+TGG - chr6_4:42259538-42259557 Msa0988480:intron 35.0%
! GTGCTGGTATTTATCTTCAA+AGG - chr6_4:42259918-42259937 Msa0988480:intron 35.0%
GGGGTTGCATATATATGAAT+AGG + chr6_4:42259983-42260002 None:intergenic 35.0%
!! GATCAGCTATTTCTTGTTCT+TGG + chr6_4:42260024-42260043 None:intergenic 35.0%
ATAGCAAAGGAAAACATGCA+GGG + chr6_4:42260076-42260095 None:intergenic 35.0%
GATGGGTAAAATGATAGCAA+AGG + chr6_4:42260089-42260108 None:intergenic 35.0%
GTATTTGATTGGGGAATGAT+AGG - chr6_4:42260208-42260227 Msa0988480:intron 35.0%
ATTGTCTTGGATGGCATTTA+GGG - chr6_4:42260321-42260340 Msa0988480:intron 35.0%
GATGGCATTTAGGGAATTAT+GGG - chr6_4:42260330-42260349 Msa0988480:intron 35.0%
CTCTTGGTTCCTATTCAATT+TGG - chr6_4:42260458-42260477 Msa0988480:CDS 35.0%
TTAATTCACATGTACACCGT+CGG + chr6_4:42260704-42260723 None:intergenic 35.0%
!! TTAGTCTTAATGTTCAGGGT+TGG - chr6_4:42260783-42260802 Msa0988480:CDS 35.0%
TTGGAGTAAGTACAGCATTA+AGG - chr6_4:42260822-42260841 Msa0988480:CDS 35.0%
TGTCAATCTAAGTACTTGGT+TGG - chr6_4:42261172-42261191 Msa0988480:intron 35.0%
ATGGGCATGAACAAAATCAA+AGG - chr6_4:42261444-42261463 Msa0988480:intron 35.0%
! TTTTTGTCTTATGGCATGAG+GGG + chr6_4:42261702-42261721 None:intergenic 35.0%
! GTTTTTGTCTTATGGCATGA+GGG + chr6_4:42261703-42261722 None:intergenic 35.0%
! AGTTTTTGTCTTATGGCATG+AGG + chr6_4:42261704-42261723 None:intergenic 35.0%
AATGAGTATTTGGATGCTCT+TGG + chr6_4:42261932-42261951 None:intergenic 35.0%
AGCATCCAAATACTCATTCT+TGG - chr6_4:42261934-42261953 Msa0988480:intron 35.0%
ATCCAAATACTCATTCTTGG+TGG - chr6_4:42261937-42261956 Msa0988480:intron 35.0%
!! ATATCAGGTAATGACTTGCT+TGG - chr6_4:42262127-42262146 Msa0988480:intron 35.0%
! GTTTTTATAGGTGTGGTCAT+TGG - chr6_4:42262236-42262255 Msa0988480:intron 35.0%
TTGGTTTCAACCAGCATTTA+GGG - chr6_4:42262336-42262355 Msa0988480:intron 35.0%
! ACTTCATTCATGATTTTGGG+AGG + chr6_4:42262405-42262424 None:intergenic 35.0%
ATTGTTGAGCGTGTAAGTAT+TGG + chr6_4:42262574-42262593 None:intergenic 35.0%
! TAAGTTGAACATCAATGCCA+TGG + chr6_4:42263076-42263095 None:intergenic 35.0%
TTTACATCTTTGTGGCTTAG+GGG - chr6_4:42263116-42263135 Msa0988480:intron 35.0%
! TGAGTTTAGCTCAGTTGTTA+GGG - chr6_4:42263295-42263314 Msa0988480:intron 35.0%
GTCTAAAAGATGATCTTGGT+AGG + chr6_4:42263461-42263480 None:intergenic 35.0%
CAAGGTCTAAAAGATGATCT+TGG + chr6_4:42263465-42263484 None:intergenic 35.0%
GTGATTATAGCTCAGTTGAT+CGG - chr6_4:42263617-42263636 Msa0988480:intron 35.0%
!! ACGAGTTAACAATCGATTTG+TGG + chr6_4:42263653-42263672 None:intergenic 35.0%
ACGACCTTGAAAAAAGGAAT+TGG + chr6_4:42263843-42263862 None:intergenic 35.0%
AAACAGAGACAAAGACTAAG+GGG + chr6_4:42263922-42263941 None:intergenic 35.0%
CAAACAGAGACAAAGACTAA+GGG + chr6_4:42263923-42263942 None:intergenic 35.0%
ACAAACAGAGACAAAGACTA+AGG + chr6_4:42263924-42263943 None:intergenic 35.0%
AAACGAGTTAAGGTAAACTC+TGG - chr6_4:42264047-42264066 Msa0988480:intron 35.0%
ATGAACATTGTGATATGCAG+GGG - chr6_4:42264087-42264106 Msa0988480:intron 35.0%
! TGTTTTGCCAAGTAGCATAA+TGG + chr6_4:42264168-42264187 None:intergenic 35.0%
AGGGTATACATCCCTTAATT+TGG - chr6_4:42264817-42264836 Msa0988480:CDS 35.0%
GAACCAACTAGCCAAATTAA+GGG + chr6_4:42264831-42264850 None:intergenic 35.0%
AGAACCAACTAGCCAAATTA+AGG + chr6_4:42264832-42264851 None:intergenic 35.0%
ACTTCAACTTCCATCTATGC+TGG - chr6_4:42255994-42256013 Msa0988480:three_prime_UTR 40.0%
CAATTGCATCTATTCCTTGC+TGG - chr6_4:42256068-42256087 Msa0988480:intron 40.0%
AAGATGCAAACTAACCAGCA+AGG + chr6_4:42256085-42256104 None:intergenic 40.0%
! AAACGGTGAAGTACCTGTAA+AGG - chr6_4:42256176-42256195 Msa0988480:intron 40.0%
GTACAGGTAAGTACCTTTAC+AGG + chr6_4:42256192-42256211 None:intergenic 40.0%
ACAAGTATTCTACGCGTACT+CGG + chr6_4:42256214-42256233 None:intergenic 40.0%
ATCCAATACGATACGGCTAT+CGG + chr6_4:42256518-42256537 None:intergenic 40.0%
AAAGCAAGGGAATTAGTGGA+AGG - chr6_4:42256842-42256861 Msa0988480:intron 40.0%
ATTGCCTAATGTGATGACAC+TGG + chr6_4:42257123-42257142 None:intergenic 40.0%
GAGGGAGTAATATCTATTGG+TGG + chr6_4:42257165-42257184 None:intergenic 40.0%
ACGGAGGGAGTAATATCTAT+TGG + chr6_4:42257168-42257187 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr6_4:42257426-42257445 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr6_4:42257321-42257340 Msa0988480:intron 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr6_4:42257426-42257445 Msa0988480:intron 40.0%
AGTGATACATAGACCACCTT+AGG - chr6_4:42257460-42257479 Msa0988480:intron 40.0%
CACATGTCATAGTTGTGTGT+GGG + chr6_4:42257506-42257525 None:intergenic 40.0%
ACACATGTCATAGTTGTGTG+TGG + chr6_4:42257507-42257526 None:intergenic 40.0%
AACTATGACATGTGTCCATG+TGG - chr6_4:42257512-42257531 Msa0988480:intron 40.0%
TGAGTGGAGAAAATCTTGTG+TGG + chr6_4:42257747-42257766 None:intergenic 40.0%
! GCAGATTGCCCAAGAATTTT+TGG + chr6_4:42257848-42257867 None:intergenic 40.0%
! GGATTGACCTGTGCATTTTA+AGG + chr6_4:42258265-42258284 None:intergenic 40.0%
TTCATCACGTTGTTCCTGAT+TGG - chr6_4:42258570-42258589 Msa0988480:intron 40.0%
TCATCACGTTGTTCCTGATT+GGG - chr6_4:42258571-42258590 Msa0988480:intron 40.0%
ATAGAAGGTTCAACCCAATC+AGG + chr6_4:42258587-42258606 None:intergenic 40.0%
GCTTAGACCATTGGTCAATT+TGG - chr6_4:42258648-42258667 Msa0988480:intron 40.0%
TAGACCATTGGTCAATTTGG+GGG - chr6_4:42258651-42258670 Msa0988480:intron 40.0%
ATTGTCTTGCACCATAAGCT+TGG + chr6_4:42259892-42259911 None:intergenic 40.0%
GCAAGACAATTTCAAAGTGC+TGG - chr6_4:42259902-42259921 Msa0988480:intron 40.0%
CAAGAAATAGCTGATCTAGC+TGG - chr6_4:42260028-42260047 Msa0988480:intron 40.0%
GATAGCAAAGGAAAACATGC+AGG + chr6_4:42260077-42260096 None:intergenic 40.0%
GGGAATGATAGGTTTAGCAA+TGG - chr6_4:42260219-42260238 Msa0988480:intron 40.0%
GCAATGGCAAGTAATATCTC+AGG - chr6_4:42260235-42260254 Msa0988480:intron 40.0%
TGGCAAGTAATATCTCAGGA+TGG - chr6_4:42260239-42260258 Msa0988480:intron 40.0%
CAATCCATTCCATCCTTCTT+TGG + chr6_4:42260305-42260324 None:intergenic 40.0%
!! AAGGATGGAATGGATTGTCT+TGG - chr6_4:42260308-42260327 Msa0988480:intron 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG - chr6_4:42260312-42260331 Msa0988480:intron 40.0%
GATTGTCTTGGATGGCATTT+AGG - chr6_4:42260320-42260339 Msa0988480:intron 40.0%
GGATGGCATTTAGGGAATTA+TGG - chr6_4:42260329-42260348 Msa0988480:intron 40.0%
ATGCTAAGTCTTGGTTCATC+TGG - chr6_4:42260361-42260380 Msa0988480:intron 40.0%
! TTGGTTCATCTGGAATGATC+TGG - chr6_4:42260371-42260390 Msa0988480:intron 40.0%
GAATGATCTGGTTAGAACAG+TGG - chr6_4:42260383-42260402 Msa0988480:intron 40.0%
ATCTGGTTAGAACAGTGGTA+TGG - chr6_4:42260388-42260407 Msa0988480:intron 40.0%
GAGCAATCACAGGATTATCA+AGG + chr6_4:42260441-42260460 None:intergenic 40.0%
GATAATCCTGTGATTGCTCT+TGG - chr6_4:42260442-42260461 Msa0988480:CDS 40.0%
TGCCACCAAGAATGAGTATT+TGG + chr6_4:42261942-42261961 None:intergenic 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG - chr6_4:42261962-42261981 Msa0988480:intron 40.0%
! TGAGGAGGTTTTTATAGGTG+TGG - chr6_4:42262229-42262248 Msa0988480:intron 40.0%
CTCCCAATTGCAATTTACCT+TGG - chr6_4:42262317-42262336 Msa0988480:intron 40.0%
! CTAAATGCTGGTTGAAACCA+AGG + chr6_4:42262337-42262356 None:intergenic 40.0%
CTTGGTTTCAACCAGCATTT+AGG - chr6_4:42262335-42262354 Msa0988480:intron 40.0%
TGGTTTCAACCAGCATTTAG+GGG - chr6_4:42262337-42262356 Msa0988480:intron 40.0%
CGCTCAACAATATTTGAGCA+TGG - chr6_4:42262583-42262602 Msa0988480:intron 40.0%
TGTCATTGTACCACTTTGCT+AGG - chr6_4:42263043-42263062 Msa0988480:intron 40.0%
! GTGAGTTTAGCTCAGTTGTT+AGG - chr6_4:42263294-42263313 Msa0988480:intron 40.0%
TCAACTGAGCTATAATCACG+TGG + chr6_4:42263616-42263635 None:intergenic 40.0%
!! ACAATCGATTTGTGGAACAC+TGG + chr6_4:42263645-42263664 None:intergenic 40.0%
ACTCGTACGACCTTGAAAAA+AGG + chr6_4:42263849-42263868 None:intergenic 40.0%
ACAAGTCAAGTATTCCCATC+AGG - chr6_4:42263871-42263890 Msa0988480:intron 40.0%
CAAGTCAAGTATTCCCATCA+GGG - chr6_4:42263872-42263891 Msa0988480:intron 40.0%
CAGCAAATCGAATGCAAATC+TGG - chr6_4:42264565-42264584 Msa0988480:intron 40.0%
! CATCCCTTAATTTGGCTAGT+TGG - chr6_4:42264825-42264844 Msa0988480:CDS 40.0%
GGAGTGAGGCAATCAAGATA+TGG - chr6_4:42255920-42255939 Msa0988480:three_prime_UTR 45.0%
ATGGAAGATAGCACTTCCAG+TGG - chr6_4:42255939-42255958 Msa0988480:three_prime_UTR 45.0%
AACAGTGAACACAAAGCCAC+TGG + chr6_4:42255958-42255977 None:intergenic 45.0%
TCCATCTATGCTGGTCATCT+TGG - chr6_4:42256003-42256022 Msa0988480:three_prime_UTR 45.0%
TCCAAGATGACCAGCATAGA+TGG + chr6_4:42256007-42256026 None:intergenic 45.0%
!! TATGTGGGAGCTTTGAAGCA+TGG - chr6_4:42256144-42256163 Msa0988480:intron 45.0%
!! ATGTGGGAGCTTTGAAGCAT+GGG - chr6_4:42256145-42256164 Msa0988480:intron 45.0%
GAGTACGCGTAGAATACTTG+TGG - chr6_4:42256213-42256232 Msa0988480:CDS 45.0%
TACCGATAGCCGTATCGTAT+TGG - chr6_4:42256513-42256532 Msa0988480:intron 45.0%
! TTGAGGATGTCGACTGAGTT+AGG + chr6_4:42256936-42256955 None:intergenic 45.0%
TGCATTACACGACAACAGTG+AGG - chr6_4:42257089-42257108 Msa0988480:intron 45.0%
ATTACACGACAACAGTGAGG+TGG - chr6_4:42257092-42257111 Msa0988480:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr6_4:42257425-42257444 None:intergenic 45.0%
GATACATAGACCACCTTAGG+TGG - chr6_4:42257463-42257482 Msa0988480:intron 45.0%
TCACACGAGAAACACTTGTG+TGG - chr6_4:42257570-42257589 Msa0988480:intron 45.0%
! TGGACCAGGACCAAGAATTT+TGG - chr6_4:42257590-42257609 Msa0988480:CDS 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG + chr6_4:42257641-42257660 None:intergenic 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + chr6_4:42257741-42257760 None:intergenic 45.0%
! TTCATAGGAGAGTGTGTGAG+TGG + chr6_4:42257763-42257782 None:intergenic 45.0%
CACACACTCTCCTATGAAAG+TGG - chr6_4:42257765-42257784 Msa0988480:intron 45.0%
AGACCATTGGTCAATTTGGG+GGG - chr6_4:42258652-42258671 Msa0988480:intron 45.0%
ACTGCACTAGCAACACTTTG+TGG - chr6_4:42259866-42259885 Msa0988480:intron 45.0%
ACACTTTGTGGCCAAGCTTA+TGG - chr6_4:42259878-42259897 Msa0988480:intron 45.0%
AGGCAAGAGTAGTATGCATG+TGG + chr6_4:42259963-42259982 None:intergenic 45.0%
! GTCATTGGTTGGTCCAAAGA+AGG - chr6_4:42260289-42260308 Msa0988480:intron 45.0%
! TTGGTTGGTCCAAAGAAGGA+TGG - chr6_4:42260293-42260312 Msa0988480:intron 45.0%
TGGTCCAAAGAAGGATGGAA+TGG - chr6_4:42260298-42260317 Msa0988480:intron 45.0%
TAGGAACCAAGAGCAATCAC+AGG + chr6_4:42260451-42260470 None:intergenic 45.0%
GTCAATAATCCCTACACCGA+CGG - chr6_4:42260685-42260704 Msa0988480:intron 45.0%
ACTTACTCCAAGAAGCAGCA+TGG + chr6_4:42260813-42260832 None:intergenic 45.0%
TCGAGTTCATGCAAGACACA+TGG + chr6_4:42261236-42261255 None:intergenic 45.0%
CTTGCATGAACTCGAGACAA+AGG - chr6_4:42261241-42261260 Msa0988480:intron 45.0%
GTTCGTGTCTCTCATACACT+TGG - chr6_4:42261896-42261915 Msa0988480:intron 45.0%
ATAGGTGTGGTCATTGGATG+TGG - chr6_4:42262242-42262261 Msa0988480:intron 45.0%
TGGATGTGGATGGCAAGTTA+TGG - chr6_4:42262256-42262275 Msa0988480:intron 45.0%
TGTGGATGGCAAGTTATGGT+TGG - chr6_4:42262260-42262279 Msa0988480:intron 45.0%
ATACCTTGACCCCTAAATGC+TGG + chr6_4:42262349-42262368 None:intergenic 45.0%
ATGGGGTCTTGAGTTAGAAC+AGG - chr6_4:42262827-42262846 Msa0988480:intron 45.0%
TTGTAAGACCAACTGGACCA+AGG - chr6_4:42263198-42263217 Msa0988480:intron 45.0%
AATTACCTCCTTGGTCCAGT+TGG + chr6_4:42263209-42263228 None:intergenic 45.0%
GAAAACATGCCCAGACGAAA+TGG + chr6_4:42263811-42263830 None:intergenic 45.0%
ATTCCCATCAGGGTTATTCC+TGG - chr6_4:42263882-42263901 Msa0988480:intron 45.0%
TTCCCATCAGGGTTATTCCT+GGG - chr6_4:42263883-42263902 Msa0988480:intron 45.0%
GACAAAGACTAAGGGGACAT+TGG + chr6_4:42263915-42263934 None:intergenic 45.0%
!!! TTTTGTTATTATTATTTTTT+AGG - chr6_4:42258151-42258170 Msa0988480:intron 5.0%
!!! ATTAATTTTTATATTTTTGA+TGG + chr6_4:42259394-42259413 None:intergenic 5.0%
!! AAAAATTAATATTTAATTCA+TGG - chr6_4:42259404-42259423 Msa0988480:intron 5.0%
!!! AAAAAATTCTAATATTTTTT+TGG - chr6_4:42259433-42259452 Msa0988480:intron 5.0%
!! TAAAAAAGTAAAATAAAATT+AGG - chr6_4:42262712-42262731 Msa0988480:intron 5.0%
!! TATATATATATATATTGAAA+GGG + chr6_4:42263553-42263572 None:intergenic 5.0%
!! ATATATATATATATATTGAA+AGG + chr6_4:42263554-42263573 None:intergenic 5.0%
!!! TTTATTTATAATCTTTTATT+TGG - chr6_4:42263945-42263964 Msa0988480:intron 5.0%
!! ATATATGATATTAATTTATA+AGG - chr6_4:42264797-42264816 Msa0988480:CDS 5.0%
!! TATATGATATTAATTTATAA+GGG - chr6_4:42264798-42264817 Msa0988480:CDS 5.0%
ATTCTACGCGTACTCGGTAC+AGG + chr6_4:42256208-42256227 None:intergenic 50.0%
ACCTACGCAACACAGTGTTG+AGG - chr6_4:42256549-42256568 Msa0988480:intron 50.0%
TCCTCAACACTGTGTTGCGT+AGG + chr6_4:42256553-42256572 None:intergenic 50.0%
! ACGCAACACAGTGTTGAGGA+AGG - chr6_4:42256553-42256572 Msa0988480:intron 50.0%
! TTGAGGAAGGCACAGTGTTG+AGG - chr6_4:42256566-42256585 Msa0988480:intron 50.0%
ACTTTGTCATGCAGGGGCTT+TGG + chr6_4:42257054-42257073 None:intergenic 50.0%
GGGACCAGTGTCATCACATT+AGG - chr6_4:42257116-42257135 Msa0988480:intron 50.0%
CAAGTGGTACATGCCACCTA+AGG + chr6_4:42257479-42257498 None:intergenic 50.0%
GTTGTGTGTGGGTGTACAAG+TGG + chr6_4:42257495-42257514 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr6_4:42257576-42257595 Msa0988480:intron 50.0%
GTGACCAAAGACCACTTGTG+TGG - chr6_4:42257714-42257733 Msa0988480:intron 50.0%
TGGTCCACACAAGTGGTCTT+TGG + chr6_4:42257721-42257740 None:intergenic 50.0%
AAAGACCACTTGTGTGGACC+AGG - chr6_4:42257720-42257739 Msa0988480:intron 50.0%
TTCTTGGGCAATCTGCTGCT+CGG - chr6_4:42257852-42257871 Msa0988480:intron 50.0%
GACCATTGGTCAATTTGGGG+GGG - chr6_4:42258653-42258672 Msa0988480:intron 50.0%
ACCATTGGTCAATTTGGGGG+GGG - chr6_4:42258654-42258673 Msa0988480:intron 50.0%
ACATGTACACCGTCGGTGTA+GGG + chr6_4:42260697-42260716 None:intergenic 50.0%
! TGGAACTCCATGCTGCTTCT+TGG - chr6_4:42260803-42260822 Msa0988480:CDS 50.0%
GCTGAGTATACCTAGACTCG+TGG - chr6_4:42261547-42261566 Msa0988480:intron 50.0%
TCGTACGATTCCACGAGTCT+AGG + chr6_4:42261560-42261579 None:intergenic 50.0%
GTGTGGTCATTGGATGTGGA+TGG - chr6_4:42262246-42262265 Msa0988480:intron 50.0%
CAACCAGCATTTAGGGGTCA+AGG - chr6_4:42262343-42262362 Msa0988480:intron 50.0%
TGGTCGTTTGCCTAGCAAAG+TGG + chr6_4:42263056-42263075 None:intergenic 50.0%
CTTTGCTAGGCAAACGACCA+TGG - chr6_4:42263056-42263075 Msa0988480:intron 50.0%
TCTTTGTGGCTTAGGGGCTT+TGG - chr6_4:42263122-42263141 Msa0988480:intron 50.0%
CTTTGTGGCTTAGGGGCTTT+GGG - chr6_4:42263123-42263142 Msa0988480:intron 50.0%
TTTGTGGCTTAGGGGCTTTG+GGG - chr6_4:42263124-42263143 Msa0988480:intron 50.0%
TAAGACCAACTGGACCAAGG+AGG - chr6_4:42263201-42263220 Msa0988480:intron 50.0%
! TGGTATTGGGCCATTTCGTC+TGG - chr6_4:42263798-42263817 Msa0988480:intron 50.0%
! GGTATTGGGCCATTTCGTCT+GGG - chr6_4:42263799-42263818 Msa0988480:intron 50.0%
GACCCAGGAATAACCCTGAT+GGG + chr6_4:42263888-42263907 None:intergenic 50.0%
TGACCCAGGAATAACCCTGA+TGG + chr6_4:42263889-42263908 None:intergenic 50.0%
ATCAGGGTTATTCCTGGGTC+AGG - chr6_4:42263888-42263907 Msa0988480:intron 50.0%
ATTGTGATATGCAGGGGCTG+AGG - chr6_4:42264093-42264112 Msa0988480:intron 50.0%
! GGAAGGCACAGTGTTGAGGA+AGG - chr6_4:42256570-42256589 Msa0988480:intron 55.0%
ACACGACAACAGTGAGGTGG+AGG - chr6_4:42257095-42257114 Msa0988480:intron 55.0%
CACGACAACAGTGAGGTGGA+GGG - chr6_4:42257096-42257115 Msa0988480:intron 55.0%
GTGGTACATGCCACCTAAGG+TGG + chr6_4:42257476-42257495 None:intergenic 55.0%
TTGTGTGTGTGAGGGCCACA+TGG + chr6_4:42257530-42257549 None:intergenic 55.0%
CCATTGGTCAATTTGGGGGG+GGG - chr6_4:42258655-42258674 Msa0988480:intron 55.0%
CATTGGTCAATTTGGGGGGG+GGG - chr6_4:42258656-42258675 Msa0988480:intron 55.0%
ATTGGTCAATTTGGGGGGGG+GGG - chr6_4:42258657-42258676 Msa0988480:intron 55.0%
CACATGTACACCGTCGGTGT+AGG + chr6_4:42260698-42260717 None:intergenic 55.0%
GTGGTCCTGGTCCACACAAG+TGG + chr6_4:42257728-42257747 None:intergenic 60.0%
CCCCCCCCCAAATTGACCAA+TGG + chr6_4:42258658-42258677 None:intergenic 60.0%
TTGGTCAATTTGGGGGGGGG+GGG - chr6_4:42258658-42258677 Msa0988480:intron 60.0%
TGGTCAATTTGGGGGGGGGG+GGG - chr6_4:42258659-42258678 Msa0988480:intron 65.0%
!! GTGGCTTAGGGGCTTTGGGG+AGG - chr6_4:42263127-42263146 Msa0988480:intron 65.0%
GGGGACATTGGACCTGACCC+AGG + chr6_4:42263903-42263922 None:intergenic 65.0%
GGTCAATTTGGGGGGGGGGG+GGG - chr6_4:42258660-42258679 Msa0988480:intron 70.0%
GTCAATTTGGGGGGGGGGGG+GGG - chr6_4:42258661-42258680 Msa0988480:intron 70.0%
TCAATTTGGGGGGGGGGGGG+GGG - chr6_4:42258662-42258681 Msa0988480:intron 70.0%
GGGGGGGGGGGTTATGAGTG+TGG - chr6_4:42258692-42258711 Msa0988480:CDS 70.0%
CAATTTGGGGGGGGGGGGGG+GGG - chr6_4:42258663-42258682 Msa0988480:intron 75.0%
AATTTGGGGGGGGGGGGGGG+GGG - chr6_4:42258664-42258683 Msa0988480:intron 75.0%
! ATTTGGGGGGGGGGGGGGGG+GGG - chr6_4:42258665-42258684 Msa0988480:intron 80.0%
! TTTGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258666-42258685 Msa0988480:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258667-42258686 Msa0988480:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr6_4:42258668-42258687 Msa0988480:intron 95.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 42255734 42265069 42255734 ID=Msa0988480;Name=Msa0988480
chr6_4 mRNA 42255734 42265069 42255734 ID=Msa0988480-mRNA-1;Parent=Msa0988480;Name=Msa0988480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=98|0.71|0.75|1|0.42|0.5|8|367|390
chr6_4 exon 42255734 42256085 42255734 ID=Msa0988480-mRNA-1:exon:9921;Parent=Msa0988480-mRNA-1
chr6_4 exon 42256186 42256248 42256186 ID=Msa0988480-mRNA-1:exon:9920;Parent=Msa0988480-mRNA-1
chr6_4 exon 42257581 42257667 42257581 ID=Msa0988480-mRNA-1:exon:9919;Parent=Msa0988480-mRNA-1
chr6_4 exon 42258439 42258557 42258439 ID=Msa0988480-mRNA-1:exon:9918;Parent=Msa0988480-mRNA-1
chr6_4 exon 42258670 42258908 42258670 ID=Msa0988480-mRNA-1:exon:9917;Parent=Msa0988480-mRNA-1
chr6_4 exon 42260402 42260596 42260402 ID=Msa0988480-mRNA-1:exon:9916;Parent=Msa0988480-mRNA-1
chr6_4 exon 42260723 42260949 42260723 ID=Msa0988480-mRNA-1:exon:9915;Parent=Msa0988480-mRNA-1
chr6_4 exon 42264714 42265069 42264714 ID=Msa0988480-mRNA-1:exon:9914;Parent=Msa0988480-mRNA-1
chr6_4 five_prime_UTR 42264972 42265069 42264972 ID=Msa0988480-mRNA-1:five_prime_utr;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42264714 42264971 42264714 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42260723 42260949 42260723 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42260402 42260596 42260402 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42258670 42258908 42258670 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42258439 42258557 42258439 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42257581 42257667 42257581 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 CDS 42256201 42256248 42256201 ID=Msa0988480-mRNA-1:cds;Parent=Msa0988480-mRNA-1
chr6_4 three_prime_UTR 42256186 42256200 42256186 ID=Msa0988480-mRNA-1:three_prime_utr;Parent=Msa0988480-mRNA-1
chr6_4 three_prime_UTR 42255734 42256085 42255734 ID=Msa0988480-mRNA-1:three_prime_utr;Parent=Msa0988480-mRNA-1
Gene Sequence

>Msa0988480

ATGGAAACACCATTGCTGATCAAAAGCTTTACTTCAGAAAATGATTACTTGGAAGTGAAAAGTTTGAAGGATGTTAAACATGTTTTGTGGAGTGAGGCAATCAAGATATGGAAGATAGCACTTCCAGTGGCTTTGTGTTCACTGTTTCAGTACCTTACAAACACTTCAACTTCCATCTATGCTGGTCATCTTGGAGACATTGAGCTTTCTTCTTTCTCTCTTTTTCAAAGTATCATCAATTGCATCTATTCCTTGCTGTTTGGTATGTCAACTGCACTAGCAACACTTTGTGGCCAAGCTTATGGTGCAAGACAATTTCAAAGTGCTGGTATTTATCTTCAAAGGTCATGGATTATACTCTTCACCACATGCATACTACTCTTGCCTATTCATATATATGCAACCCCAATCTTAAAATTTCTTGGCCAAGAACAAGAAATAGCTGATCTAGCTGGCAAATATGCAATTCAAATAATTCCCTGCATTGTATTTGATTGGGGAATGATAGGTTTAGCAATGGCAAGTAATATCTCAGGATGGATATTTTCTATTGCATTGGTAATTTATGTCATTGGTTGGTCCAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACAATGCTAAGTCTTGGTTCATCTGGAATGATCTGGTTAGAACATGTTCGTGTCTCTCATACACTTGGCATGTCGCATCCAAGAGCATCCAAATACTCATTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAATCATTTTCATGACTGTTATTTTCTTGAGCAAACAAGAATTTGCCATCATCTTTACCAAAAGTGTAGATATGATACATGCTGCTAGTGAATTAGCATACTTTCTTGGTATAAGCATGGTTCTCAACAGTGTTTCACAAACTATATCAGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTATTACATTATTGGACTCCCAATTGCAATTTACCTTGGTTTCAACCAGCATTTAGGGGTCAAGGGGCTTTGGGGAGGCACGATATGCGCAAGTATTCTTCAGATTATAGTCCTCACAATCATTATTTGTAAGACCAACTGGACCAAGGAGGTAGAGCAAACAGCAAATCGAATGCAAATCTGGATCTCTAACAACTAA
Protein sequence

>Msa0988480

METPLLIKSFTSENDYLEVKSLKDVKHVLWSEAIKIWKIALPVALCSLFQYLTNTSTSIYAGHLGDIELSSFSLFQSIINCIYSLLFGMSTALATLCGQAYGARQFQSAGIYLQRSWIILFTTCILLLPIHIYATPILKFLGQEQEIADLAGKYAIQIIPCIVFDWGMIGLAMASNISGWIFSIALVIYVIGWSKEGWNGLSWMAFRELWEFTMLSLGSSGMIWLEHVRVSHTLGMSHPRASKYSFLVAMSQSLLIGIIFMTVIFLSKQEFAIIFTKSVDMIHAASELAYFLGISMVLNSVSQTISGVVIGCGWQVMVGYINLACYYIIGLPIAIYLGFNQHLGVKGLWGGTICASILQIIVLTIIICKTNWTKEVEQTANRMQIWISNN*