Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725270 | XP_013448285.1 | 98.258 | 287 | 5 | 0 | 1 | 287 | 1 | 287 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725270 | sp|Q9ZVH3|ORC6_ARATH | 65.614 | 285 | 94 | 3 | 1 | 285 | 1 | 281 | 3.23e-131 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725270 | A0A072TY04 | 98.258 | 287 | 5 | 0 | 1 | 287 | 1 | 287 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056180 | Msa0725270 | 0.828212 | 1.019050e-54 | -8.615850e-47 |
| Msa0115550 | Msa0725270 | 0.806474 | 8.085180e-50 | -8.615850e-47 |
| Msa0606100 | Msa0725270 | 0.812572 | 3.963433e-51 | -8.615850e-47 |
| Msa0607800 | Msa0725270 | 0.800561 | 1.360538e-48 | -8.615850e-47 |
| Msa0621710 | Msa0725270 | 0.811956 | 5.400023e-51 | -8.615850e-47 |
| Msa0647050 | Msa0725270 | 0.822736 | 2.019359e-53 | -8.615850e-47 |
| Msa0657700 | Msa0725270 | 0.829257 | 5.694344e-55 | -8.615850e-47 |
| Msa0658640 | Msa0725270 | 0.810474 | 1.132459e-50 | -8.615850e-47 |
| Msa0698730 | Msa0725270 | 0.800569 | 1.355547e-48 | -8.615850e-47 |
| Msa0702810 | Msa0725270 | 0.802199 | 6.284097e-49 | -8.615850e-47 |
| Msa0703600 | Msa0725270 | 0.814839 | 1.255564e-51 | -8.615850e-47 |
| Msa0709200 | Msa0725270 | 0.816738 | 4.738183e-52 | -8.615850e-47 |
| Msa0709440 | Msa0725270 | 0.816714 | 4.796488e-52 | -8.615850e-47 |
| Msa0714520 | Msa0725270 | 0.813723 | 2.215891e-51 | -8.615850e-47 |
| Msa0714790 | Msa0725270 | 0.813307 | 2.735411e-51 | -8.615850e-47 |
| Msa0716480 | Msa0725270 | 0.804140 | 2.492531e-49 | -8.615850e-47 |
| Msa0725270 | Msa0735780 | 0.826536 | 2.571252e-54 | -8.615850e-47 |
| Msa0725270 | Msa0743440 | 0.800083 | 1.701915e-48 | -8.615850e-47 |
| Msa0725270 | Msa0756820 | 0.806669 | 7.352591e-50 | -8.615850e-47 |
| Msa0725270 | Msa0765810 | 0.824934 | 6.168237e-54 | -8.615850e-47 |
| Msa0725270 | Msa0773630 | 0.801153 | 1.029873e-48 | -8.615850e-47 |
| Msa0725270 | Msa0780910 | 0.802571 | 5.267197e-49 | -8.615850e-47 |
| Msa0725270 | Msa0821160 | 0.804055 | 2.595482e-49 | -8.615850e-47 |
| Msa0725270 | Msa0828970 | 0.809637 | 1.714993e-50 | -8.615850e-47 |
| Msa0725270 | Msa0837460 | 0.811103 | 8.277951e-51 | -8.615850e-47 |
| Msa0725270 | Msa0931590 | 0.809700 | 1.661963e-50 | -8.615850e-47 |
| Msa0725270 | Msa0966320 | 0.811177 | 7.975389e-51 | -8.615850e-47 |
| Msa0725270 | Msa0966480 | 0.812203 | 4.770091e-51 | -8.615850e-47 |
| Msa0725270 | Msa1033920 | 0.809553 | 1.787765e-50 | -8.615850e-47 |
| Msa0725270 | Msa1035650 | 0.806570 | 7.714375e-50 | -8.615850e-47 |
| Msa0725270 | Msa1081390 | 0.826744 | 2.292896e-54 | -8.615850e-47 |
| Msa0725270 | Msa1084530 | 0.821438 | 4.036732e-53 | -8.615850e-47 |
| Msa0725270 | Msa1116190 | 0.827585 | 1.442672e-54 | -8.615850e-47 |
| Msa0725270 | Msa1116220 | 0.828383 | 9.271559e-55 | -8.615850e-47 |
| Msa0725270 | Msa1116660 | 0.813896 | 2.029833e-51 | -8.615850e-47 |
| Msa0725270 | Msa1125820 | 0.827344 | 1.647887e-54 | -8.615850e-47 |
| Msa0725270 | Msa1125990 | 0.823699 | 1.203711e-53 | -8.615850e-47 |
| Msa0725270 | Msa1132530 | 0.809454 | 1.877049e-50 | -8.615850e-47 |
| Msa0725270 | Msa1162880 | 0.809031 | 2.313251e-50 | -8.615850e-47 |
| Msa0725270 | Msa1171290 | 0.813034 | 3.138932e-51 | -8.615850e-47 |
| Msa0725270 | Msa1214350 | 0.818408 | 1.991358e-52 | -8.615850e-47 |
| Msa0725270 | Msa1226520 | 0.815154 | 1.068980e-51 | -8.615850e-47 |
| Msa0725270 | Msa1254540 | 0.812156 | 4.884176e-51 | -8.615850e-47 |
| Msa0725270 | Msa1263780 | 0.816683 | 4.873696e-52 | -8.615850e-47 |
| Msa0725270 | Msa1339170 | 0.800188 | 1.620749e-48 | -8.615850e-47 |
| Msa0725270 | Msa1343170 | 0.807497 | 4.909951e-50 | -8.615850e-47 |
| Msa0725270 | Msa1343180 | 0.806333 | 8.657871e-50 | -8.615850e-47 |
| Msa0725270 | Msa1450190 | 0.809969 | 1.455154e-50 | -8.615850e-47 |
| Msa0190570 | Msa0725270 | 0.805819 | 1.110130e-49 | -8.615850e-47 |
| Msa0367520 | Msa0725270 | 0.829940 | 3.885798e-55 | -8.615850e-47 |
| Msa0368860 | Msa0725270 | 0.821362 | 4.203526e-53 | -8.615850e-47 |
| Msa0462780 | Msa0725270 | 0.816445 | 5.509475e-52 | -8.615850e-47 |
| Msa0481890 | Msa0725270 | 0.814616 | 1.406903e-51 | -8.615850e-47 |
| Msa0343010 | Msa0725270 | 0.805472 | 1.313074e-49 | -8.615850e-47 |
| Msa0567170 | Msa0725270 | 0.815079 | 1.110606e-51 | -8.615850e-47 |
| Msa0593400 | Msa0725270 | 0.833618 | 4.808033e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725270 | MtrunA17_Chr7g0231551 | 98.258 | 287 | 5 | 0 | 1 | 287 | 1 | 287 | 0.0 | 573 |
| Msa0725270 | MtrunA17_Chr5g0416941 | 97.909 | 287 | 6 | 0 | 1 | 287 | 1 | 287 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725270 | AT1G26840.1 | 65.614 | 285 | 94 | 3 | 1 | 285 | 1 | 281 | 3.28e-132 | 376 |
Find 66 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTTGTCTTGTTTAT+TGG | 0.082347 | 5_1:-24885980 | None:intergenic |
| CTTACATCGCCTCCAACTTC+TGG | 0.194165 | 5_1:-24886149 | None:intergenic |
| CTATTGGTCTTCACTTCTTT+AGG | 0.253592 | 5_1:-24884556 | None:intergenic |
| TCTTGTTGTTTGTAGTTATA+AGG | 0.256528 | 5_1:+24884112 | Msa0725270:intron |
| GCTATTGTGAAGTGAATTAT+AGG | 0.274482 | 5_1:-24883823 | None:intergenic |
| CGATTCAATTCGGGTGTGTT+CGG | 0.334549 | 5_1:+24883967 | Msa0725270:CDS |
| ACGGTTTCTTTCGTCGTTAC+CGG | 0.335864 | 5_1:+24884136 | Msa0725270:CDS |
| GACGGAGTTCGGCGGCTTTA+CGG | 0.346724 | 5_1:-24883549 | None:intergenic |
| CTTGCTATAGATTAATGCTT+TGG | 0.354568 | 5_1:-24886351 | None:intergenic |
| GGCTTTACGGATGAGAAGTT+TGG | 0.355912 | 5_1:-24883536 | None:intergenic |
| GGTGGCTATTTGTCTGATGA+TGG | 0.360466 | 5_1:+24884745 | Msa0725270:CDS |
| AGGGAATTGGCGATTCAATT+CGG | 0.375252 | 5_1:+24883957 | Msa0725270:CDS |
| AAAGGGATATATACCTCTAT+TGG | 0.375362 | 5_1:-24884572 | None:intergenic |
| AAGTTGAGGCGAGTCTGTTT+TGG | 0.386907 | 5_1:-24886105 | None:intergenic |
| ATCGCAGAGGCGACGGAGTT+CGG | 0.401087 | 5_1:-24883560 | None:intergenic |
| GGGAATTGGCGATTCAATTC+GGG | 0.405730 | 5_1:+24883958 | Msa0725270:CDS |
| GCCTCCAACTTCTGGGTCTC+AGG | 0.409294 | 5_1:-24886141 | None:intergenic |
| TGTCTTGTTTATTGGATGTA+AGG | 0.411006 | 5_1:-24885972 | None:intergenic |
| TGCAAAAGCTATTATCTGTA+TGG | 0.415448 | 5_1:+24883713 | Msa0725270:CDS |
| AAAGCAACAGCCATGAAAAC+CGG | 0.421447 | 5_1:-24884191 | None:intergenic |
| CTTCTCTTATGTTGCGACAT+AGG | 0.422518 | 5_1:-24886268 | None:intergenic |
| TTACATCGCCTCCAACTTCT+GGG | 0.428496 | 5_1:-24886148 | None:intergenic |
| TATAAAACAAAGCATGAAGA+TGG | 0.434193 | 5_1:+24886238 | Msa0725270:three_prime_UTR |
| ATTAAGCTGATTGAACTTTG+TGG | 0.438612 | 5_1:+24884336 | Msa0725270:CDS |
| TCTTCTGCGGTGAAGCTTAG+TGG | 0.452173 | 5_1:+24883774 | Msa0725270:CDS |
| AAACGCGTGATTATGAGAAA+TGG | 0.453232 | 5_1:+24885938 | Msa0725270:CDS |
| GAAGCTTGATGTGAGGGAAT+TGG | 0.468324 | 5_1:+24883944 | Msa0725270:CDS |
| ACGGATGAGAAGTTTGGAAT+CGG | 0.483447 | 5_1:-24883530 | None:intergenic |
| AGCTTAGTGGAATGTCTGAT+AGG | 0.487219 | 5_1:+24883787 | Msa0725270:CDS |
| TTTATGTTCAAAGAAACATA+AGG | 0.489147 | 5_1:+24884217 | Msa0725270:CDS |
| AGCTCCTGAGACCCAGAAGT+TGG | 0.494754 | 5_1:+24886137 | Msa0725270:CDS |
| AAAGAAGTGAAGACCAATAG+AGG | 0.499335 | 5_1:+24884559 | Msa0725270:CDS |
| GCTTAGTGGAATGTCTGATA+GGG | 0.500694 | 5_1:+24883788 | Msa0725270:CDS |
| GCGGCTTACAACGCCGATGA+TGG | 0.502301 | 5_1:-24883599 | None:intergenic |
| GTGGCTATTTGTCTGATGAT+GGG | 0.505484 | 5_1:+24884746 | Msa0725270:CDS |
| GAAATCGCTGCAACGAAGCT+TGG | 0.509168 | 5_1:+24883735 | Msa0725270:CDS |
| ATTATACCGTTTGTTCGTGA+TGG | 0.510956 | 5_1:+24883990 | Msa0725270:CDS |
| AATTCACTTCACAATAGCAT+TGG | 0.525636 | 5_1:+24883828 | Msa0725270:CDS |
| GCACTTGCACGACGAGCAGC+CGG | 0.534668 | 5_1:-24884155 | None:intergenic |
| TTCAGACCATCACGAACAAA+CGG | 0.535833 | 5_1:-24883996 | None:intergenic |
| AAGTTGGAGGCGATGTAAGA+TGG | 0.537833 | 5_1:+24886153 | Msa0725270:exon |
| TGTCTTACCAAGCAAAAGAA+AGG | 0.541434 | 5_1:+24884714 | Msa0725270:CDS |
| AAGCAACAGCCATGAAAACC+GGG | 0.557768 | 5_1:-24884190 | None:intergenic |
| AGTGGACATCGCAGAGGCGA+CGG | 0.558431 | 5_1:-24883567 | None:intergenic |
| TCCTGAGACCCAGAAGTTGG+AGG | 0.558960 | 5_1:+24886140 | Msa0725270:CDS |
| TAGGTTGAAGCTTGATGTGA+GGG | 0.559039 | 5_1:+24883938 | Msa0725270:intron |
| AATAAACAAGACAACAAAGA+AGG | 0.560557 | 5_1:+24885982 | Msa0725270:CDS |
| CACTTCGATTCCTCCATCAT+CGG | 0.569694 | 5_1:+24883586 | Msa0725270:CDS |
| ACCAAGCAAAAGAAAGGCTG+AGG | 0.575748 | 5_1:+24884720 | Msa0725270:CDS |
| TTTGTCTGATGATGGGGCAG+AGG | 0.577375 | 5_1:+24884753 | Msa0725270:CDS |
| ATAAAACAAAGCATGAAGAT+GGG | 0.579321 | 5_1:+24886239 | Msa0725270:three_prime_UTR |
| GAGCTTCCTTGACGAAGTTG+AGG | 0.590042 | 5_1:-24886119 | None:intergenic |
| AGCAAAAGAAAGGCTGAGGA+TGG | 0.596269 | 5_1:+24884724 | Msa0725270:CDS |
| TTGTTTGTAGTTATAAGGAA+CGG | 0.597779 | 5_1:+24884117 | Msa0725270:intron |
| ATGTCGCAACATAAGAGAAG+TGG | 0.607704 | 5_1:+24886271 | Msa0725270:three_prime_UTR |
| AAAAGAAAGGCTGAGGATGG+TGG | 0.614741 | 5_1:+24884727 | Msa0725270:CDS |
| TGGCTATTTGTCTGATGATG+GGG | 0.620723 | 5_1:+24884747 | Msa0725270:CDS |
| TTGGAGGCGATGTAAGATGG+TGG | 0.627242 | 5_1:+24886156 | Msa0725270:exon |
| CTTAGTGGAATGTCTGATAG+GGG | 0.629181 | 5_1:+24883789 | Msa0725270:CDS |
| GCTTACAACGCCGATGATGG+AGG | 0.635395 | 5_1:-24883596 | None:intergenic |
| GACTCGCCTCAACTTCGTCA+AGG | 0.645066 | 5_1:+24886113 | Msa0725270:CDS |
| GCAGAGGCGACGGAGTTCGG+CGG | 0.647879 | 5_1:-24883557 | None:intergenic |
| CGATGATGGAGGAATCGAAG+TGG | 0.667995 | 5_1:-24883585 | None:intergenic |
| GTGATGAAAGTCGATTCAAG+TGG | 0.670817 | 5_1:+24886202 | Msa0725270:three_prime_UTR |
| TTAGGTTGAAGCTTGATGTG+AGG | 0.671603 | 5_1:+24883937 | Msa0725270:intron |
| AATCGAAGTGGACATCGCAG+AGG | 0.711889 | 5_1:-24883573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATTTTTAATTTTT+TGG | + | chr5_1:24883885-24883904 | Msa0725270:intron | 0.0% |
| !! | AATTGAAAAGAAAAAAAAAA+CGG | - | chr5_1:24883676-24883695 | None:intergenic | 10.0% |
| !!! | TGATTAATTATTATTTGTTT+TGG | + | chr5_1:24884808-24884827 | Msa0725270:intron | 10.0% |
| !! | TAAATTATTTGTAAAAAACA+AGG | + | chr5_1:24884842-24884861 | Msa0725270:intron | 10.0% |
| !!! | TAAAATTTTCTAAACTTATA+TGG | + | chr5_1:24885018-24885037 | Msa0725270:intron | 10.0% |
| !! | ATTAGCAAAAAAAAATTAAA+TGG | - | chr5_1:24885379-24885398 | None:intergenic | 10.0% |
| !! | ACTTTATTATTAATATGAAT+TGG | - | chr5_1:24885863-24885882 | None:intergenic | 10.0% |
| !! | TAGAAAAAAAAAACTGAAAA+CGG | - | chr5_1:24883650-24883669 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCAATTTTGTTTT+AGG | + | chr5_1:24883683-24883702 | Msa0725270:intron | 15.0% |
| !!! | TTCTTTTCAATTTTGTTTTA+GGG | + | chr5_1:24883684-24883703 | Msa0725270:intron | 15.0% |
| !! | AGATAATACAAAAAAAATGT+GGG | - | chr5_1:24885133-24885152 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGTATTATCTGT+TGG | + | chr5_1:24885135-24885154 | Msa0725270:intron | 15.0% |
| !! | TTAATGATGAATTTGTGTTT+AGG | + | chr5_1:24883919-24883938 | Msa0725270:intron | 20.0% |
| !! | TTTATGTTCAAAGAAACATA+AGG | + | chr5_1:24884217-24884236 | Msa0725270:CDS | 20.0% |
| !! | AGTTTAAATGAATTGTGAAT+TGG | + | chr5_1:24884462-24884481 | Msa0725270:intron | 20.0% |
| !! | ATTTGTAAAAAACAAGGAAT+TGG | + | chr5_1:24884848-24884867 | Msa0725270:intron | 20.0% |
| !! | CAGATAATACAAAAAAAATG+TGG | - | chr5_1:24885134-24885153 | None:intergenic | 20.0% |
| !! | TTGAAATTATCATAATTACG+TGG | - | chr5_1:24885592-24885611 | None:intergenic | 20.0% |
| !! | ATGATAATTTCAATTTAGAC+CGG | + | chr5_1:24885599-24885618 | Msa0725270:intron | 20.0% |
| !!! | TTTAGTTTATAAAGTGATGA+TGG | + | chr5_1:24885711-24885730 | Msa0725270:intron | 20.0% |
| !! | TTAGTTTATAAAGTGATGAT+GGG | + | chr5_1:24885712-24885731 | Msa0725270:intron | 20.0% |
| !!! | TTTTTTTATAACTTGAAACC+TGG | - | chr5_1:24885906-24885925 | None:intergenic | 20.0% |
| !!! | AGGTTTCAAGTTATAAAAAA+AGG | + | chr5_1:24885905-24885924 | Msa0725270:intron | 20.0% |
| !! | TTATAAAAAAAGGAAACAGA+TGG | + | chr5_1:24885915-24885934 | Msa0725270:CDS | 20.0% |
| !!! | AATTTTGTTTGTTGTCTTTT+GGG | + | chr5_1:24886322-24886341 | Msa0725270:three_prime_UTR | 20.0% |
| !!! | TACTTTTTATCATTGGAATT+TGG | + | chr5_1:24886391-24886410 | Msa0725270:three_prime_UTR | 20.0% |
| ! | AATTGTAAGTAACGAAAAAG+CGG | - | chr5_1:24883621-24883640 | None:intergenic | 25.0% |
| !!! | TCTTGTTGTTTGTAGTTATA+AGG | + | chr5_1:24884112-24884131 | Msa0725270:intron | 25.0% |
| ! | TTGTTTGTAGTTATAAGGAA+CGG | + | chr5_1:24884117-24884136 | Msa0725270:intron | 25.0% |
| ! | TAATGTGTGATGTGTTTATT+AGG | + | chr5_1:24884420-24884439 | Msa0725270:intron | 25.0% |
| ! | CAATACATAAAACTGGAAAA+GGG | - | chr5_1:24884592-24884611 | None:intergenic | 25.0% |
| ! | TGTTAAGCAATACATAAAAC+TGG | - | chr5_1:24884599-24884618 | None:intergenic | 25.0% |
| !!! | TCATCAGTGTTGTTTTTTAA+TGG | + | chr5_1:24884877-24884896 | Msa0725270:intron | 25.0% |
| !!! | CATCAGTGTTGTTTTTTAAT+GGG | + | chr5_1:24884878-24884897 | Msa0725270:intron | 25.0% |
| ! | ATTAAGGAAACTACAAATGA+AGG | + | chr5_1:24885175-24885194 | Msa0725270:intron | 25.0% |
| !! | ATGTTTTACTCTTCATATTC+TGG | - | chr5_1:24885263-24885282 | None:intergenic | 25.0% |
| !!! | TAAAACATCGACTTTACATA+AGG | + | chr5_1:24885275-24885294 | Msa0725270:intron | 25.0% |
| ! | GTCATCAAACAATTTCTAAA+AGG | - | chr5_1:24885330-24885349 | None:intergenic | 25.0% |
| ! | TTATCATAATTACGTGGAAT+TGG | - | chr5_1:24885586-24885605 | None:intergenic | 25.0% |
| ! | TGATAATTTCAATTTAGACC+GGG | + | chr5_1:24885600-24885619 | Msa0725270:intron | 25.0% |
| ! | AAAAAGTCTATTGCATACTT+TGG | + | chr5_1:24885623-24885642 | Msa0725270:intron | 25.0% |
| !! | TAGTTTATAAAGTGATGATG+GGG | + | chr5_1:24885713-24885732 | Msa0725270:intron | 25.0% |
| !!! | TTCTTTGTTGTCTTGTTTAT+TGG | - | chr5_1:24885983-24886002 | None:intergenic | 25.0% |
| ! | AATAAACAAGACAACAAAGA+AGG | + | chr5_1:24885982-24886001 | Msa0725270:CDS | 25.0% |
| ! | TATAAAACAAAGCATGAAGA+TGG | + | chr5_1:24886238-24886257 | Msa0725270:three_prime_UTR | 25.0% |
| ! | ATAAAACAAAGCATGAAGAT+GGG | + | chr5_1:24886239-24886258 | Msa0725270:three_prime_UTR | 25.0% |
| !!! | CAATTTTGTTTGTTGTCTTT+TGG | + | chr5_1:24886321-24886340 | Msa0725270:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTTGTTGTCTTTTG+GGG | + | chr5_1:24886323-24886342 | Msa0725270:three_prime_UTR | 25.0% |
| !!! | AGACTGTTACTTTTTATCAT+TGG | + | chr5_1:24886384-24886403 | Msa0725270:three_prime_UTR | 25.0% |
| TGCAAAAGCTATTATCTGTA+TGG | + | chr5_1:24883713-24883732 | Msa0725270:CDS | 30.0% | |
| GCTATTGTGAAGTGAATTAT+AGG | - | chr5_1:24883826-24883845 | None:intergenic | 30.0% | |
| AATTCACTTCACAATAGCAT+TGG | + | chr5_1:24883828-24883847 | Msa0725270:CDS | 30.0% | |
| ATTAAGCTGATTGAACTTTG+TGG | + | chr5_1:24884336-24884355 | Msa0725270:CDS | 30.0% | |
| AAAGGGATATATACCTCTAT+TGG | - | chr5_1:24884575-24884594 | None:intergenic | 30.0% | |
| GCAATACATAAAACTGGAAA+AGG | - | chr5_1:24884593-24884612 | None:intergenic | 30.0% | |
| ! | AATATGAAAGCTGGTCTATA+AGG | - | chr5_1:24884917-24884936 | None:intergenic | 30.0% |
| TTATAGACCAGCTTTCATAT+TGG | + | chr5_1:24884916-24884935 | Msa0725270:intron | 30.0% | |
| ! | AAAATGTGGGATTTAAGACA+GGG | - | chr5_1:24885120-24885139 | None:intergenic | 30.0% |
| ! | AAAAATGTGGGATTTAAGAC+AGG | - | chr5_1:24885121-24885140 | None:intergenic | 30.0% |
| GGTTAATGTGTAGTGATTAT+AGG | + | chr5_1:24885196-24885215 | Msa0725270:intron | 30.0% | |
| ! | ATGTTGAAATCTGAAACACA+AGG | + | chr5_1:24885221-24885240 | Msa0725270:intron | 30.0% |
| ! | AAAGCATCAGAACAACATAA+TGG | - | chr5_1:24885797-24885816 | None:intergenic | 30.0% |
| ! | TCTTTTGTCTGTATATATCC+AGG | + | chr5_1:24885885-24885904 | Msa0725270:intron | 30.0% |
| !! | TGTCTTGTTTATTGGATGTA+AGG | - | chr5_1:24885975-24885994 | None:intergenic | 30.0% |
| ATGTTAACTGTCTAGATCTT+TGG | - | chr5_1:24886049-24886068 | None:intergenic | 30.0% | |
| ! | CTTGCTATAGATTAATGCTT+TGG | - | chr5_1:24886354-24886373 | None:intergenic | 30.0% |
| ATTATACCGTTTGTTCGTGA+TGG | + | chr5_1:24883990-24884009 | Msa0725270:CDS | 35.0% | |
| AGACATCAACACATTCACAT+CGG | - | chr5_1:24884079-24884098 | None:intergenic | 35.0% | |
| ! | GTGTTGATGTCTTGATGAAA+TGG | + | chr5_1:24884087-24884106 | Msa0725270:intron | 35.0% |
| CAATGTGAACACAATGTATG+TGG | + | chr5_1:24884257-24884276 | Msa0725270:intron | 35.0% | |
| !! | GAATTGTGAATTGGTGTTGT+AGG | + | chr5_1:24884471-24884490 | Msa0725270:intron | 35.0% |
| ! | ACTTGTGCCATGATGTTTTT+GGG | + | chr5_1:24884512-24884531 | Msa0725270:CDS | 35.0% |
| !! | CTATTGGTCTTCACTTCTTT+AGG | - | chr5_1:24884559-24884578 | None:intergenic | 35.0% |
| AAAGAAGTGAAGACCAATAG+AGG | + | chr5_1:24884559-24884578 | Msa0725270:CDS | 35.0% | |
| TTTCTGATTCTCTGCTTCTT+TGG | + | chr5_1:24884677-24884696 | Msa0725270:intron | 35.0% | |
| TTCTGATTCTCTGCTTCTTT+GGG | + | chr5_1:24884678-24884697 | Msa0725270:intron | 35.0% | |
| TGTCTTACCAAGCAAAAGAA+AGG | + | chr5_1:24884714-24884733 | Msa0725270:CDS | 35.0% | |
| GGTAAAACCAATATGAAAGC+TGG | - | chr5_1:24884926-24884945 | None:intergenic | 35.0% | |
| TATCTCAGCGAATTCAACTT+GGG | - | chr5_1:24884947-24884966 | None:intergenic | 35.0% | |
| ! | GCTGAGATAGACTAATTTTG+TGG | + | chr5_1:24884958-24884977 | Msa0725270:intron | 35.0% |
| TGTCTACTGTACTGTATTGT+TGG | + | chr5_1:24884984-24885003 | Msa0725270:intron | 35.0% | |
| CCAACAGATAATACAAGACA+AGG | - | chr5_1:24885052-24885071 | None:intergenic | 35.0% | |
| CCTTGTCTTGTATTATCTGT+TGG | + | chr5_1:24885049-24885068 | Msa0725270:intron | 35.0% | |
| TATCTGTTGGATCCATACAT+TGG | + | chr5_1:24885148-24885167 | Msa0725270:intron | 35.0% | |
| !! | TCCATACATTGGCTTGATTA+AGG | + | chr5_1:24885159-24885178 | Msa0725270:intron | 35.0% |
| TCCTTAATCAAGCCAATGTA+TGG | - | chr5_1:24885163-24885182 | None:intergenic | 35.0% | |
| ! | AATCTGAAACACAAGGTTTG+TGG | + | chr5_1:24885228-24885247 | Msa0725270:intron | 35.0% |
| ATTGTCATCAATGCCAAAGT+TGG | + | chr5_1:24885404-24885423 | Msa0725270:intron | 35.0% | |
| TCATAAGGCAGAGTTGTAAA+GGG | - | chr5_1:24885451-24885470 | None:intergenic | 35.0% | |
| TTCATAAGGCAGAGTTGTAA+AGG | - | chr5_1:24885452-24885471 | None:intergenic | 35.0% | |
| ATAGACACTGGTGTTTCATA+AGG | - | chr5_1:24885466-24885485 | None:intergenic | 35.0% | |
| CTCATCAATCTAATAGACAC+TGG | - | chr5_1:24885478-24885497 | None:intergenic | 35.0% | |
| GCAATGAACAAAACAATGCA+AGG | - | chr5_1:24885533-24885552 | None:intergenic | 35.0% | |
| !! | GTATGCAATAGACTTTTTCC+CGG | - | chr5_1:24885621-24885640 | None:intergenic | 35.0% |
| TATTGCATACTTTGGATCAG+TGG | + | chr5_1:24885631-24885650 | Msa0725270:intron | 35.0% | |
| ATGAATTCAACTGCACTTTC+TGG | - | chr5_1:24885672-24885691 | None:intergenic | 35.0% | |
| AAACGCGTGATTATGAGAAA+TGG | + | chr5_1:24885938-24885957 | Msa0725270:CDS | 35.0% | |
| ! | ACGGATGAGAAGTTTGGAAT+CGG | - | chr5_1:24883533-24883552 | None:intergenic | 40.0% |
| ! | TCTTTTCGATCGATCTTCTG+CGG | + | chr5_1:24883761-24883780 | Msa0725270:CDS | 40.0% |
| AGCTTAGTGGAATGTCTGAT+AGG | + | chr5_1:24883787-24883806 | Msa0725270:CDS | 40.0% | |
| GCTTAGTGGAATGTCTGATA+GGG | + | chr5_1:24883788-24883807 | Msa0725270:CDS | 40.0% | |
| CTTAGTGGAATGTCTGATAG+GGG | + | chr5_1:24883789-24883808 | Msa0725270:CDS | 40.0% | |
| !! | TTAGGTTGAAGCTTGATGTG+AGG | + | chr5_1:24883937-24883956 | Msa0725270:intron | 40.0% |
| ! | TAGGTTGAAGCTTGATGTGA+GGG | + | chr5_1:24883938-24883957 | Msa0725270:intron | 40.0% |
| AGGGAATTGGCGATTCAATT+CGG | + | chr5_1:24883957-24883976 | Msa0725270:CDS | 40.0% | |
| TTCAGACCATCACGAACAAA+CGG | - | chr5_1:24883999-24884018 | None:intergenic | 40.0% | |
| AAAGCAACAGCCATGAAAAC+CGG | - | chr5_1:24884194-24884213 | None:intergenic | 40.0% | |
| ! | GACTTGTGCCATGATGTTTT+TGG | + | chr5_1:24884511-24884530 | Msa0725270:CDS | 40.0% |
| !! | CTTGTGCCATGATGTTTTTG+GGG | + | chr5_1:24884513-24884532 | Msa0725270:CDS | 40.0% |
| TAGCTACCCCAAAAACATCA+TGG | - | chr5_1:24884522-24884541 | None:intergenic | 40.0% | |
| GTGGCTATTTGTCTGATGAT+GGG | + | chr5_1:24884746-24884765 | Msa0725270:CDS | 40.0% | |
| ! | TGGCTATTTGTCTGATGATG+GGG | + | chr5_1:24884747-24884766 | Msa0725270:CDS | 40.0% |
| CTATCTCAGCGAATTCAACT+TGG | - | chr5_1:24884948-24884967 | None:intergenic | 40.0% | |
| CTACTGTACTGTATTGTTGG+AGG | + | chr5_1:24884987-24885006 | Msa0725270:intron | 40.0% | |
| ! | GATTTAAGACAGGGCAACAA+GGG | - | chr5_1:24885111-24885130 | None:intergenic | 40.0% |
| ! | GAGCTTTGTCAAAGTTGTGA+AGG | + | chr5_1:24885297-24885316 | Msa0725270:intron | 40.0% |
| CATTATGCATCCACCAACTT+TGG | - | chr5_1:24885420-24885439 | None:intergenic | 40.0% | |
| TCATTGCAGTGACCTCTATT+TGG | + | chr5_1:24885546-24885565 | Msa0725270:intron | 40.0% | |
| !!! | GTCTGTTTTGGTTTCTTGCT+GGG | - | chr5_1:24886096-24886115 | None:intergenic | 40.0% |
| !!! | AGTCTGTTTTGGTTTCTTGC+TGG | - | chr5_1:24886097-24886116 | None:intergenic | 40.0% |
| ! | GTGATGAAAGTCGATTCAAG+TGG | + | chr5_1:24886202-24886221 | Msa0725270:three_prime_UTR | 40.0% |
| CTTCTCTTATGTTGCGACAT+AGG | - | chr5_1:24886271-24886290 | None:intergenic | 40.0% | |
| ATGTCGCAACATAAGAGAAG+TGG | + | chr5_1:24886271-24886290 | Msa0725270:three_prime_UTR | 40.0% | |
| GGCTTTACGGATGAGAAGTT+TGG | - | chr5_1:24883539-24883558 | None:intergenic | 45.0% | |
| CACTTCGATTCCTCCATCAT+CGG | + | chr5_1:24883586-24883605 | Msa0725270:CDS | 45.0% | |
| GAAGCTTGATGTGAGGGAAT+TGG | + | chr5_1:24883944-24883963 | Msa0725270:CDS | 45.0% | |
| GGGAATTGGCGATTCAATTC+GGG | + | chr5_1:24883958-24883977 | Msa0725270:CDS | 45.0% | |
| CGATTCAATTCGGGTGTGTT+CGG | + | chr5_1:24883967-24883986 | Msa0725270:CDS | 45.0% | |
| ACGGTTTCTTTCGTCGTTAC+CGG | + | chr5_1:24884136-24884155 | Msa0725270:CDS | 45.0% | |
| !!! | AAGTGCTGATTTTACTCGCC+CGG | + | chr5_1:24884172-24884191 | Msa0725270:CDS | 45.0% |
| ! | TTTTACTCGCCCGGTTTTCA+TGG | + | chr5_1:24884181-24884200 | Msa0725270:CDS | 45.0% |
| AAGCAACAGCCATGAAAACC+GGG | - | chr5_1:24884193-24884212 | None:intergenic | 45.0% | |
| ACCAAGCAAAAGAAAGGCTG+AGG | + | chr5_1:24884720-24884739 | Msa0725270:CDS | 45.0% | |
| ! | TCCTCAGCCTTTCTTTTGCT+TGG | - | chr5_1:24884724-24884743 | None:intergenic | 45.0% |
| AGCAAAAGAAAGGCTGAGGA+TGG | + | chr5_1:24884724-24884743 | Msa0725270:CDS | 45.0% | |
| AAAAGAAAGGCTGAGGATGG+TGG | + | chr5_1:24884727-24884746 | Msa0725270:CDS | 45.0% | |
| GGTGGCTATTTGTCTGATGA+TGG | + | chr5_1:24884745-24884764 | Msa0725270:CDS | 45.0% | |
| ! | GGATTTAAGACAGGGCAACA+AGG | - | chr5_1:24885112-24885131 | None:intergenic | 45.0% |
| ! | TCGTGAGTATTCTTGCTGTC+TGG | - | chr5_1:24885352-24885371 | None:intergenic | 45.0% |
| GACAGCAAGAATACTCACGA+TGG | + | chr5_1:24885352-24885371 | Msa0725270:intron | 45.0% | |
| GTCATCAATGCCAAAGTTGG+TGG | + | chr5_1:24885407-24885426 | Msa0725270:intron | 45.0% | |
| TAATGATGTTCCGTGCACTG+AGG | + | chr5_1:24885499-24885518 | Msa0725270:intron | 45.0% | |
| TCTATGACCCTGCCAAATAG+AGG | - | chr5_1:24885561-24885580 | None:intergenic | 45.0% | |
| ! | AAGTTGAGGCGAGTCTGTTT+TGG | - | chr5_1:24886108-24886127 | None:intergenic | 45.0% |
| TTACATCGCCTCCAACTTCT+GGG | - | chr5_1:24886151-24886170 | None:intergenic | 45.0% | |
| AAGTTGGAGGCGATGTAAGA+TGG | + | chr5_1:24886153-24886172 | Msa0725270:exon | 45.0% | |
| AATCGAAGTGGACATCGCAG+AGG | - | chr5_1:24883576-24883595 | None:intergenic | 50.0% | |
| !! | CGATGATGGAGGAATCGAAG+TGG | - | chr5_1:24883588-24883607 | None:intergenic | 50.0% |
| GAAATCGCTGCAACGAAGCT+TGG | + | chr5_1:24883735-24883754 | Msa0725270:CDS | 50.0% | |
| TCTTCTGCGGTGAAGCTTAG+TGG | + | chr5_1:24883774-24883793 | Msa0725270:CDS | 50.0% | |
| !! | TTTGTCTGATGATGGGGCAG+AGG | + | chr5_1:24884753-24884772 | Msa0725270:CDS | 50.0% |
| !! | TGATGGGGCAGAGGTATCAA+TGG | + | chr5_1:24884762-24884781 | Msa0725270:intron | 50.0% |
| TAAGACAGGGCAACAAGGGA+TGG | - | chr5_1:24885107-24885126 | None:intergenic | 50.0% | |
| TGCAGTGACCTCTATTTGGC+AGG | + | chr5_1:24885550-24885569 | Msa0725270:intron | 50.0% | |
| GCAGTGACCTCTATTTGGCA+GGG | + | chr5_1:24885551-24885570 | Msa0725270:intron | 50.0% | |
| CTAGATCTTTGGCTGAGACG+TGG | - | chr5_1:24886038-24886057 | None:intergenic | 50.0% | |
| GAGCTTCCTTGACGAAGTTG+AGG | - | chr5_1:24886122-24886141 | None:intergenic | 50.0% | |
| CTTACATCGCCTCCAACTTC+TGG | - | chr5_1:24886152-24886171 | None:intergenic | 50.0% | |
| TTGGAGGCGATGTAAGATGG+TGG | + | chr5_1:24886156-24886175 | Msa0725270:exon | 50.0% | |
| ! | GCTTACAACGCCGATGATGG+AGG | - | chr5_1:24883599-24883618 | None:intergenic | 55.0% |
| TGATGTTCCGTGCACTGAGG+TGG | + | chr5_1:24885502-24885521 | Msa0725270:intron | 55.0% | |
| GACTCGCCTCAACTTCGTCA+AGG | + | chr5_1:24886113-24886132 | Msa0725270:CDS | 55.0% | |
| AGCTCCTGAGACCCAGAAGT+TGG | + | chr5_1:24886137-24886156 | Msa0725270:CDS | 55.0% | |
| TCCTGAGACCCAGAAGTTGG+AGG | + | chr5_1:24886140-24886159 | Msa0725270:CDS | 55.0% | |
| GACGGAGTTCGGCGGCTTTA+CGG | - | chr5_1:24883552-24883571 | None:intergenic | 60.0% | |
| ATCGCAGAGGCGACGGAGTT+CGG | - | chr5_1:24883563-24883582 | None:intergenic | 60.0% | |
| AGTGGACATCGCAGAGGCGA+CGG | - | chr5_1:24883570-24883589 | None:intergenic | 60.0% | |
| GCGGCTTACAACGCCGATGA+TGG | - | chr5_1:24883602-24883621 | None:intergenic | 60.0% | |
| GGATGTGCCACCTCAGTGCA+CGG | - | chr5_1:24885512-24885531 | None:intergenic | 60.0% | |
| GCCTCCAACTTCTGGGTCTC+AGG | - | chr5_1:24886144-24886163 | None:intergenic | 60.0% | |
| GCACTTGCACGACGAGCAGC+CGG | - | chr5_1:24884158-24884177 | None:intergenic | 65.0% | |
| GCAGAGGCGACGGAGTTCGG+CGG | - | chr5_1:24883560-24883579 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 24883477 | 24886478 | 24883477 | ID=Msa0725270;Name=Msa0725270 |
| chr5_1 | mRNA | 24883477 | 24886478 | 24883477 | ID=Msa0725270-mRNA-1;Parent=Msa0725270;Name=Msa0725270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=16|1|1|1|1|1|9|308|287 |
| chr5_1 | exon | 24883477 | 24883612 | 24883477 | ID=Msa0725270-mRNA-1:exon:9025;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24883705 | 24883856 | 24883705 | ID=Msa0725270-mRNA-1:exon:9026;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24883941 | 24884021 | 24883941 | ID=Msa0725270-mRNA-1:exon:9027;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24884127 | 24884238 | 24884127 | ID=Msa0725270-mRNA-1:exon:9028;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24884321 | 24884383 | 24884321 | ID=Msa0725270-mRNA-1:exon:9029;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24884493 | 24884580 | 24884493 | ID=Msa0725270-mRNA-1:exon:9030;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24884704 | 24884774 | 24884704 | ID=Msa0725270-mRNA-1:exon:9031;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24885907 | 24886003 | 24885907 | ID=Msa0725270-mRNA-1:exon:9032;Parent=Msa0725270-mRNA-1 |
| chr5_1 | exon | 24886091 | 24886478 | 24886091 | ID=Msa0725270-mRNA-1:exon:9033;Parent=Msa0725270-mRNA-1 |
| chr5_1 | five_prime_UTR | 24883477 | 24883492 | 24883477 | ID=Msa0725270-mRNA-1:five_prime_utr;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24883493 | 24883612 | 24883493 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24883705 | 24883856 | 24883705 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24883941 | 24884021 | 24883941 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24884127 | 24884238 | 24884127 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24884321 | 24884383 | 24884321 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24884493 | 24884580 | 24884493 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24884704 | 24884774 | 24884704 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24885907 | 24886003 | 24885907 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | CDS | 24886091 | 24886170 | 24886091 | ID=Msa0725270-mRNA-1:cds;Parent=Msa0725270-mRNA-1 |
| chr5_1 | three_prime_UTR | 24886171 | 24886478 | 24886171 | ID=Msa0725270-mRNA-1:three_prime_utr;Parent=Msa0725270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
