AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0765810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765810 MtrunA17_Chr7g0231551 98.606 287 4 0 1 287 1 287 0.0 577
Msa0765810 MtrunA17_Chr5g0416941 98.258 287 5 0 1 287 1 287 0.0 574
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765810 AT1G26840.1 65.614 285 94 3 1 285 1 281 2.08e-133 379

Find 67 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGTTGTCTTGTTTAT+TGG 0.082347 5_2:+26954034 None:intergenic
CTTACATCGCCTCCAACTTC+TGG 0.194165 5_2:+26953865 None:intergenic
CTATTGGTCTTCACTTCTTT+AGG 0.253592 5_2:+26955458 None:intergenic
TCTTGTTGTTTGTAGTTATA+AGG 0.256528 5_2:-26955902 Msa0765810:intron
CGATTCAATTCGGGTGTGTT+CGG 0.334549 5_2:-26956047 Msa0765810:CDS
ACGGTTTCTTTCGTCGTTAC+CGG 0.335864 5_2:-26955878 Msa0765810:CDS
GACGGAGTTCGGCGGCTTTA+CGG 0.346724 5_2:+26956471 None:intergenic
CTTGCTATAGATTAATGCTT+TGG 0.354568 5_2:+26953663 None:intergenic
GGCTTTACGGATGAGAAGTT+TGG 0.355912 5_2:+26956484 None:intergenic
GGTGGCTATTTGTCTGATGA+TGG 0.360466 5_2:-26955269 Msa0765810:CDS
AGGGAATTGGCGATTCAATT+CGG 0.375252 5_2:-26956057 Msa0765810:CDS
AAAGGGATATATACCTCTAT+TGG 0.375362 5_2:+26955442 None:intergenic
AAGTTGAGGCGAGTCTGTTT+TGG 0.386907 5_2:+26953909 None:intergenic
ATCGCAGAGGCGACGGAGTT+CGG 0.401087 5_2:+26956460 None:intergenic
GGGAATTGGCGATTCAATTC+GGG 0.405730 5_2:-26956056 Msa0765810:CDS
GCCTCCAACTTCTGGGTCTC+AGG 0.409294 5_2:+26953873 None:intergenic
TGTCTTGTTTATTGGATGTA+AGG 0.411006 5_2:+26954042 None:intergenic
TGCAAAAGCTATTATCTGTA+TGG 0.415448 5_2:-26956307 Msa0765810:CDS
AAAGCAACAGCCATGAAAAC+CGG 0.421447 5_2:+26955823 None:intergenic
CTTCTCTTATGTTGCGACAT+AGG 0.422518 5_2:+26953746 None:intergenic
TTACATCGCCTCCAACTTCT+GGG 0.428496 5_2:+26953866 None:intergenic
TATAAAACAAAGCATGAAGA+TGG 0.434193 5_2:-26953776 Msa0765810:three_prime_UTR
ATTAAGCTGATTGAACTTTG+TGG 0.438612 5_2:-26955678 Msa0765810:CDS
TCTTCTGCGGTGAAGCTTAG+TGG 0.452173 5_2:-26956246 Msa0765810:CDS
GAAGCTTGATGTGAGGGAAT+TGG 0.468324 5_2:-26956070 Msa0765810:CDS
ACGGATGAGAAGTTTGGAAT+CGG 0.483447 5_2:+26956490 None:intergenic
AGCTTAGTGGAATGTCTGAT+AGG 0.487219 5_2:-26956233 Msa0765810:CDS
TTTATGTTCAAAGAAACATA+AGG 0.489147 5_2:-26955797 Msa0765810:intron
AGCTCCTGAGACCCAGAAGT+TGG 0.494754 5_2:-26953877 Msa0765810:CDS
AAAGAAGTGAAGACCAATAG+AGG 0.499335 5_2:-26955455 Msa0765810:intron
GCTTAGTGGAATGTCTGATA+GGG 0.500694 5_2:-26956232 Msa0765810:CDS
GGTATTGTGAAGTGAATTGT+AGG 0.501595 5_2:+26956197 None:intergenic
GCGGCTTACAACGCCGATGA+TGG 0.502301 5_2:+26956421 None:intergenic
GTGGCTATTTGTCTGATGAT+GGG 0.505484 5_2:-26955268 Msa0765810:CDS
GAAATCGCTGCAACGAAGCT+TGG 0.509168 5_2:-26956285 Msa0765810:CDS
ATTATACCGTTTGTTCGTGA+TGG 0.510956 5_2:-26956024 Msa0765810:CDS
GCACTTGCACGACGAGCAGC+CGG 0.534668 5_2:+26955859 None:intergenic
AATTCACTTCACAATACCAT+TGG 0.534895 5_2:-26956192 Msa0765810:CDS
AAGTTGGAGGCGATGTAAGA+TGG 0.537833 5_2:-26953861 Msa0765810:exon
TGTCTTACCAAGCAAAAGAA+AGG 0.541434 5_2:-26955300 Msa0765810:CDS
AAGCAACAGCCATGAAAACC+GGG 0.557768 5_2:+26955824 None:intergenic
AGTGGACATCGCAGAGGCGA+CGG 0.558431 5_2:+26956453 None:intergenic
TCCTGAGACCCAGAAGTTGG+AGG 0.558960 5_2:-26953874 Msa0765810:CDS
TAGGTTGAAGCTTGATGTGA+GGG 0.559039 5_2:-26956076 Msa0765810:CDS
AATAAACAAGACAACAAAGA+AGG 0.560557 5_2:-26954032 Msa0765810:intron
TTGAGACCATCACGAACAAA+CGG 0.561823 5_2:+26956018 None:intergenic
ATTAATTTACTTGACACCAA+TGG 0.566547 5_2:+26956176 None:intergenic
CACTTCGATTCCTCCATCAT+CGG 0.569694 5_2:-26956434 Msa0765810:CDS
ACCAAGCAAAAGAAAGGCTG+AGG 0.575748 5_2:-26955294 Msa0765810:CDS
TTTGTCTGATGATGGGGCAG+AGG 0.577375 5_2:-26955261 Msa0765810:intron
ATAAAACAAAGCATGAAGAT+GGG 0.579321 5_2:-26953775 Msa0765810:three_prime_UTR
GAGCTTCCTTGACGAAGTTG+AGG 0.590042 5_2:+26953895 None:intergenic
AGCAAAAGAAAGGCTGAGGA+TGG 0.596269 5_2:-26955290 Msa0765810:CDS
TTGTTTGTAGTTATAAGGAA+CGG 0.597779 5_2:-26955897 Msa0765810:intron
ATGTCGCAACATAAGAGAAG+TGG 0.607704 5_2:-26953743 Msa0765810:three_prime_UTR
AAACGCGTGATTATGAGCAA+TGG 0.612302 5_2:-26954076 Msa0765810:CDS
AAAAGAAAGGCTGAGGATGG+TGG 0.614741 5_2:-26955287 Msa0765810:CDS
TGGCTATTTGTCTGATGATG+GGG 0.620723 5_2:-26955267 Msa0765810:CDS
TTGGAGGCGATGTAAGATGG+TGG 0.627242 5_2:-26953858 Msa0765810:exon
CTTAGTGGAATGTCTGATAG+GGG 0.629181 5_2:-26956231 Msa0765810:CDS
GCTTACAACGCCGATGATGG+AGG 0.635395 5_2:+26956424 None:intergenic
GACTCGCCTCAACTTCGTCA+AGG 0.645066 5_2:-26953901 Msa0765810:CDS
GCAGAGGCGACGGAGTTCGG+CGG 0.647879 5_2:+26956463 None:intergenic
CGATGATGGAGGAATCGAAG+TGG 0.667995 5_2:+26956435 None:intergenic
GTGATGAAAGTCGATTCAAG+TGG 0.670817 5_2:-26953812 Msa0765810:three_prime_UTR
TTAGGTTGAAGCTTGATGTG+AGG 0.671603 5_2:-26956077 Msa0765810:intron
AATCGAAGTGGACATCGCAG+AGG 0.711889 5_2:+26956447 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCAATTTTGTTTT+AGG - chr5_2:26953764-26953783 Msa0765810:three_prime_UTR 10.0%
!!! TTTTTTTCAATTTTGTTTTA+GGG - chr5_2:26953765-26953784 Msa0765810:three_prime_UTR 10.0%
!!! TGATTAATTATTATTTGTTT+TGG - chr5_2:26954895-26954914 Msa0765810:intron 10.0%
!! TAAATTATTTGTAAAAAACA+AGG - chr5_2:26954929-26954948 Msa0765810:intron 10.0%
!!! TAAAATTTTCTAAACTTATA+TGG - chr5_2:26955105-26955124 Msa0765810:intron 10.0%
!!! AAAATTTTCTAAACTTATAT+GGG - chr5_2:26955106-26955125 Msa0765810:intron 10.0%
!! ATTAGCAAAAAAAAATTAAA+TGG + chr5_2:26955466-26955485 None:intergenic 10.0%
!! ACTTTATTATTAATATGAAT+TGG + chr5_2:26955950-26955969 None:intergenic 10.0%
!! AGATAATACAAAAAAAATGT+GGG + chr5_2:26955220-26955239 None:intergenic 15.0%
!!! ATTTTTTTTGTATTATCTGT+TGG - chr5_2:26955222-26955241 Msa0765810:intron 15.0%
!! AGAAAAAAGATAACTGAAAA+CGG + chr5_2:26953731-26953750 None:intergenic 20.0%
!! TTTATGTTCAAAGAAACATA+AGG - chr5_2:26954304-26954323 Msa0765810:intron 20.0%
!! AGTTTAAATGAATTGTGAAT+TGG - chr5_2:26954549-26954568 Msa0765810:intron 20.0%
!! ATTTGTAAAAAACAAGGAAT+TGG - chr5_2:26954935-26954954 Msa0765810:intron 20.0%
!! CAGATAATACAAAAAAAATG+TGG + chr5_2:26955221-26955240 None:intergenic 20.0%
!! TTGAAATTATCATAATTACG+TGG + chr5_2:26955679-26955698 None:intergenic 20.0%
!! ATGATAATTTCAATTTAGAC+CGG - chr5_2:26955686-26955705 Msa0765810:CDS 20.0%
!!! TTTAGTTTATAAAGTGATGA+TGG - chr5_2:26955798-26955817 Msa0765810:CDS 20.0%
!! TTAGTTTATAAAGTGATGAT+GGG - chr5_2:26955799-26955818 Msa0765810:CDS 20.0%
!!! TTTTTTTATAACTTGAAACC+TGG + chr5_2:26955993-26956012 None:intergenic 20.0%
!!! AGGTTTCAAGTTATAAAAAA+AGG - chr5_2:26955992-26956011 Msa0765810:intron 20.0%
!! TTATAAAAAAAGGAAACAGA+TGG - chr5_2:26956002-26956021 Msa0765810:intron 20.0%
!!! AATTTTGTTTGTTGTCTTTT+GGG - chr5_2:26956409-26956428 Msa0765810:intron 20.0%
!!! TACTTTTTATCATTGGAATT+TGG - chr5_2:26956478-26956497 Msa0765810:CDS 20.0%
! AATTGTAAGTAACGAAAAAG+CGG + chr5_2:26953702-26953721 None:intergenic 25.0%
! ATTAATTTACTTGACACCAA+TGG + chr5_2:26953928-26953947 None:intergenic 25.0%
! TTAACGATGAATTTGTGTTT+AGG - chr5_2:26954006-26954025 Msa0765810:intron 25.0%
!!! TCTTGTTGTTTGTAGTTATA+AGG - chr5_2:26954199-26954218 Msa0765810:intron 25.0%
! TTGTTTGTAGTTATAAGGAA+CGG - chr5_2:26954204-26954223 Msa0765810:intron 25.0%
! TAATGTGTGATGTGTTTATT+AGG - chr5_2:26954507-26954526 Msa0765810:intron 25.0%
! CAATACATAAAACTGGAAAA+GGG + chr5_2:26954679-26954698 None:intergenic 25.0%
! TGTTAAGCAATACATAAAAC+TGG + chr5_2:26954686-26954705 None:intergenic 25.0%
!!! TCATCAGTGTTGTTTTTTAA+TGG - chr5_2:26954964-26954983 Msa0765810:intron 25.0%
!!! CATCAGTGTTGTTTTTTAAT+GGG - chr5_2:26954965-26954984 Msa0765810:intron 25.0%
! ATTAAGGAAACTACAAATGA+AGG - chr5_2:26955262-26955281 Msa0765810:CDS 25.0%
!! ATGTTTTACTCTTCATATTC+TGG + chr5_2:26955350-26955369 None:intergenic 25.0%
!!! TAAAACATCGACTTTACATA+AGG - chr5_2:26955362-26955381 Msa0765810:intron 25.0%
! GTCATCAAACAATTTCTAAA+AGG + chr5_2:26955417-26955436 None:intergenic 25.0%
! TTATCATAATTACGTGGAAT+TGG + chr5_2:26955673-26955692 None:intergenic 25.0%
! TGATAATTTCAATTTAGACC+GGG - chr5_2:26955687-26955706 Msa0765810:CDS 25.0%
!! TAGTTTATAAAGTGATGATG+GGG - chr5_2:26955800-26955819 Msa0765810:CDS 25.0%
!!! TTCTTTGTTGTCTTGTTTAT+TGG + chr5_2:26956070-26956089 None:intergenic 25.0%
! AATAAACAAGACAACAAAGA+AGG - chr5_2:26956069-26956088 Msa0765810:CDS 25.0%
!! ATGTTAACTGTCTAGATTTT+TGG + chr5_2:26956136-26956155 None:intergenic 25.0%
! TATAAAACAAAGCATGAAGA+TGG - chr5_2:26956325-26956344 Msa0765810:intron 25.0%
! ATAAAACAAAGCATGAAGAT+GGG - chr5_2:26956326-26956345 Msa0765810:intron 25.0%
!!! CAATTTTGTTTGTTGTCTTT+TGG - chr5_2:26956408-26956427 Msa0765810:intron 25.0%
!!! ATTTTGTTTGTTGTCTTTTG+GGG - chr5_2:26956410-26956429 Msa0765810:intron 25.0%
!!! AGACTGTTACTTTTTATCAT+TGG - chr5_2:26956471-26956490 Msa0765810:CDS 25.0%
TGCAAAAGCTATTATCTGTA+TGG - chr5_2:26953794-26953813 Msa0765810:three_prime_UTR 30.0%
AATTCACTTCACAATACCAT+TGG - chr5_2:26953909-26953928 Msa0765810:CDS 30.0%
ATTAAGCTGATTGAACTTTG+TGG - chr5_2:26954423-26954442 Msa0765810:intron 30.0%
AAAGGGATATATACCTCTAT+TGG + chr5_2:26954662-26954681 None:intergenic 30.0%
GCAATACATAAAACTGGAAA+AGG + chr5_2:26954680-26954699 None:intergenic 30.0%
! AATATGAAAGCTGGTCTATA+AGG + chr5_2:26955004-26955023 None:intergenic 30.0%
TTATAGACCAGCTTTCATAT+TGG - chr5_2:26955003-26955022 Msa0765810:intron 30.0%
! AAAATGTGGGATTTAAGACA+GGG + chr5_2:26955207-26955226 None:intergenic 30.0%
! AAAAATGTGGGATTTAAGAC+AGG + chr5_2:26955208-26955227 None:intergenic 30.0%
GGTTAATGTGTAGTGATTAT+AGG - chr5_2:26955283-26955302 Msa0765810:CDS 30.0%
! ATGTTGAAATCTGAAACACA+AGG - chr5_2:26955308-26955327 Msa0765810:CDS 30.0%
AAAAAGCCTATTGCATACTT+TGG - chr5_2:26955710-26955729 Msa0765810:intron 30.0%
! AAAGCATCAGAACAACATAA+TGG + chr5_2:26955884-26955903 None:intergenic 30.0%
! TCTTTTGTCTGTATATATCC+AGG - chr5_2:26955972-26955991 Msa0765810:intron 30.0%
!! TGTCTTGTTTATTGGATGTA+AGG + chr5_2:26956062-26956081 None:intergenic 30.0%
! CTTGCTATAGATTAATGCTT+TGG + chr5_2:26956441-26956460 None:intergenic 30.0%
GGTATTGTGAAGTGAATTGT+AGG + chr5_2:26953907-26953926 None:intergenic 35.0%
ATTATACCGTTTGTTCGTGA+TGG - chr5_2:26954077-26954096 Msa0765810:CDS 35.0%
! GTGTTGATGTCTTGATGAAA+TGG - chr5_2:26954174-26954193 Msa0765810:intron 35.0%
CAATGCAAACACAATGTATG+TGG - chr5_2:26954344-26954363 Msa0765810:intron 35.0%
!! GAATTGTGAATTGGTGTTGT+AGG - chr5_2:26954558-26954577 Msa0765810:intron 35.0%
! ACTTGTGCCATGATGTTTTT+GGG - chr5_2:26954599-26954618 Msa0765810:intron 35.0%
!! CTATTGGTCTTCACTTCTTT+AGG + chr5_2:26954646-26954665 None:intergenic 35.0%
AAAGAAGTGAAGACCAATAG+AGG - chr5_2:26954646-26954665 Msa0765810:intron 35.0%
TTTCTGATTCTCTGCTTCTT+TGG - chr5_2:26954764-26954783 Msa0765810:intron 35.0%
TTCTGATTCTCTGCTTCTTT+GGG - chr5_2:26954765-26954784 Msa0765810:intron 35.0%
TGTCTTACCAAGCAAAAGAA+AGG - chr5_2:26954801-26954820 Msa0765810:intron 35.0%
GGTAAAACCAATATGAAAGC+TGG + chr5_2:26955013-26955032 None:intergenic 35.0%
TATCTCAGCGAATTCAACTT+GGG + chr5_2:26955034-26955053 None:intergenic 35.0%
! GCTGAGATAGACTAATTTTG+TGG - chr5_2:26955045-26955064 Msa0765810:intron 35.0%
TGTCTACTGTACTGTATTGT+TGG - chr5_2:26955071-26955090 Msa0765810:intron 35.0%
CCAACAGATAATACAAGACA+AGG + chr5_2:26955139-26955158 None:intergenic 35.0%
CCTTGTCTTGTATTATCTGT+TGG - chr5_2:26955136-26955155 Msa0765810:intron 35.0%
TATCTGTTGGATCCATACAT+TGG - chr5_2:26955235-26955254 Msa0765810:intron 35.0%
!! TCCATACATTGGCTTGATTA+AGG - chr5_2:26955246-26955265 Msa0765810:intron 35.0%
TCCTTAATCAAGCCAATGTA+TGG + chr5_2:26955250-26955269 None:intergenic 35.0%
! AATCTGAAACACAAGGTTTG+TGG - chr5_2:26955315-26955334 Msa0765810:intron 35.0%
ATTGTCATCAATGCCAAAGT+TGG - chr5_2:26955491-26955510 Msa0765810:CDS 35.0%
TCATAAGGCAGAGTTGTAAA+GGG + chr5_2:26955538-26955557 None:intergenic 35.0%
TTCATAAGGCAGAGTTGTAA+AGG + chr5_2:26955539-26955558 None:intergenic 35.0%
ATAGACACTGGTGTTTCATA+AGG + chr5_2:26955553-26955572 None:intergenic 35.0%
CTCATCAATCTAATAGACAC+TGG + chr5_2:26955565-26955584 None:intergenic 35.0%
GCAATGAACAAAACAATGCA+AGG + chr5_2:26955620-26955639 None:intergenic 35.0%
ACTGATCCAAAGTATGCAAT+AGG + chr5_2:26955719-26955738 None:intergenic 35.0%
TATTGCATACTTTGGATCAG+TGG - chr5_2:26955718-26955737 Msa0765810:intron 35.0%
ATGAATTCAACTGCACTTTC+TGG + chr5_2:26955759-26955778 None:intergenic 35.0%
! ACGGATGAGAAGTTTGGAAT+CGG + chr5_2:26953614-26953633 None:intergenic 40.0%
! TCTTTTCGATCGATCTTCTG+CGG - chr5_2:26953842-26953861 Msa0765810:three_prime_UTR 40.0%
AGCTTAGTGGAATGTCTGAT+AGG - chr5_2:26953868-26953887 Msa0765810:CDS 40.0%
GCTTAGTGGAATGTCTGATA+GGG - chr5_2:26953869-26953888 Msa0765810:CDS 40.0%
CTTAGTGGAATGTCTGATAG+GGG - chr5_2:26953870-26953889 Msa0765810:CDS 40.0%
!! TTAGGTTGAAGCTTGATGTG+AGG - chr5_2:26954024-26954043 Msa0765810:intron 40.0%
! TAGGTTGAAGCTTGATGTGA+GGG - chr5_2:26954025-26954044 Msa0765810:intron 40.0%
AGGGAATTGGCGATTCAATT+CGG - chr5_2:26954044-26954063 Msa0765810:CDS 40.0%
TTGAGACCATCACGAACAAA+CGG + chr5_2:26954086-26954105 None:intergenic 40.0%
AAAGCAACAGCCATGAAAAC+CGG + chr5_2:26954281-26954300 None:intergenic 40.0%
! GACTTGTGCCATGATGTTTT+TGG - chr5_2:26954598-26954617 Msa0765810:intron 40.0%
!! CTTGTGCCATGATGTTTTTG+GGG - chr5_2:26954600-26954619 Msa0765810:intron 40.0%
TAGCTACCCCAAAAACATCA+TGG + chr5_2:26954609-26954628 None:intergenic 40.0%
GTGGCTATTTGTCTGATGAT+GGG - chr5_2:26954833-26954852 Msa0765810:intron 40.0%
! TGGCTATTTGTCTGATGATG+GGG - chr5_2:26954834-26954853 Msa0765810:intron 40.0%
CTATCTCAGCGAATTCAACT+TGG + chr5_2:26955035-26955054 None:intergenic 40.0%
CTACTGTACTGTATTGTTGG+AGG - chr5_2:26955074-26955093 Msa0765810:intron 40.0%
! GATTTAAGACAGGGCAACAA+GGG + chr5_2:26955198-26955217 None:intergenic 40.0%
! GAGCTTTGTCAAAGTTGTGA+AGG - chr5_2:26955384-26955403 Msa0765810:intron 40.0%
CATTATGCATCCACCAACTT+TGG + chr5_2:26955507-26955526 None:intergenic 40.0%
TCATTGCAGTGACCTCTATT+TGG - chr5_2:26955633-26955652 Msa0765810:intron 40.0%
!! GTATGCAATAGGCTTTTTCC+CGG + chr5_2:26955708-26955727 None:intergenic 40.0%
AAACGCGTGATTATGAGCAA+TGG - chr5_2:26956025-26956044 Msa0765810:CDS 40.0%
!!! GTCTGTTTTGGTTTCTTGCT+GGG + chr5_2:26956183-26956202 None:intergenic 40.0%
!!! AGTCTGTTTTGGTTTCTTGC+TGG + chr5_2:26956184-26956203 None:intergenic 40.0%
! GTGATGAAAGTCGATTCAAG+TGG - chr5_2:26956289-26956308 Msa0765810:CDS 40.0%
CTTCTCTTATGTTGCGACAT+AGG + chr5_2:26956358-26956377 None:intergenic 40.0%
ATGTCGCAACATAAGAGAAG+TGG - chr5_2:26956358-26956377 Msa0765810:intron 40.0%
GGCTTTACGGATGAGAAGTT+TGG + chr5_2:26953620-26953639 None:intergenic 45.0%
CACTTCGATTCCTCCATCAT+CGG - chr5_2:26953667-26953686 Msa0765810:three_prime_UTR 45.0%
GAAGCTTGATGTGAGGGAAT+TGG - chr5_2:26954031-26954050 Msa0765810:intron 45.0%
GGGAATTGGCGATTCAATTC+GGG - chr5_2:26954045-26954064 Msa0765810:CDS 45.0%
CGATTCAATTCGGGTGTGTT+CGG - chr5_2:26954054-26954073 Msa0765810:CDS 45.0%
ACGGTTTCTTTCGTCGTTAC+CGG - chr5_2:26954223-26954242 Msa0765810:intron 45.0%
!!! AAGTGCTGATTTTACTCGCC+CGG - chr5_2:26954259-26954278 Msa0765810:intron 45.0%
! TTTTACTCGCCCGGTTTTCA+TGG - chr5_2:26954268-26954287 Msa0765810:intron 45.0%
AAGCAACAGCCATGAAAACC+GGG + chr5_2:26954280-26954299 None:intergenic 45.0%
ACCAAGCAAAAGAAAGGCTG+AGG - chr5_2:26954807-26954826 Msa0765810:intron 45.0%
! TCCTCAGCCTTTCTTTTGCT+TGG + chr5_2:26954811-26954830 None:intergenic 45.0%
AGCAAAAGAAAGGCTGAGGA+TGG - chr5_2:26954811-26954830 Msa0765810:intron 45.0%
AAAAGAAAGGCTGAGGATGG+TGG - chr5_2:26954814-26954833 Msa0765810:intron 45.0%
GGTGGCTATTTGTCTGATGA+TGG - chr5_2:26954832-26954851 Msa0765810:intron 45.0%
! GGATTTAAGACAGGGCAACA+AGG + chr5_2:26955199-26955218 None:intergenic 45.0%
! TCGTGAGTATTCTTGCTGTC+TGG + chr5_2:26955439-26955458 None:intergenic 45.0%
GACAGCAAGAATACTCACGA+TGG - chr5_2:26955439-26955458 Msa0765810:intron 45.0%
GTCATCAATGCCAAAGTTGG+TGG - chr5_2:26955494-26955513 Msa0765810:CDS 45.0%
TAATGATGTTCCGTGCACTG+AGG - chr5_2:26955586-26955605 Msa0765810:intron 45.0%
TCTATGACCCTGCCAAATAG+AGG + chr5_2:26955648-26955667 None:intergenic 45.0%
!!! CTAGATTTTTGGCTGAGACG+TGG + chr5_2:26956125-26956144 None:intergenic 45.0%
! AAGTTGAGGCGAGTCTGTTT+TGG + chr5_2:26956195-26956214 None:intergenic 45.0%
TTACATCGCCTCCAACTTCT+GGG + chr5_2:26956238-26956257 None:intergenic 45.0%
AAGTTGGAGGCGATGTAAGA+TGG - chr5_2:26956240-26956259 Msa0765810:CDS 45.0%
!! AAATTGAAAAAAAAAAAAAA+CGG + chr5_2:26953758-26953777 None:intergenic 5.0%
!!! ATTTTTAATTATCATTTTTT+TGG - chr5_2:26953972-26953991 Msa0765810:intron 5.0%
AATCGAAGTGGACATCGCAG+AGG + chr5_2:26953657-26953676 None:intergenic 50.0%
!! CGATGATGGAGGAATCGAAG+TGG + chr5_2:26953669-26953688 None:intergenic 50.0%
GAAATCGCTGCAACGAAGCT+TGG - chr5_2:26953816-26953835 Msa0765810:three_prime_UTR 50.0%
TCTTCTGCGGTGAAGCTTAG+TGG - chr5_2:26953855-26953874 Msa0765810:exon 50.0%
!! TTTGTCTGATGATGGGGCAG+AGG - chr5_2:26954840-26954859 Msa0765810:intron 50.0%
!! TGATGGGGCAGAGGTATCAA+TGG - chr5_2:26954849-26954868 Msa0765810:intron 50.0%
TAAGACAGGGCAACAAGGGA+TGG + chr5_2:26955194-26955213 None:intergenic 50.0%
TGCAGTGACCTCTATTTGGC+AGG - chr5_2:26955637-26955656 Msa0765810:intron 50.0%
GCAGTGACCTCTATTTGGCA+GGG - chr5_2:26955638-26955657 Msa0765810:intron 50.0%
GAGCTTCCTTGACGAAGTTG+AGG + chr5_2:26956209-26956228 None:intergenic 50.0%
CTTACATCGCCTCCAACTTC+TGG + chr5_2:26956239-26956258 None:intergenic 50.0%
TTGGAGGCGATGTAAGATGG+TGG - chr5_2:26956243-26956262 Msa0765810:CDS 50.0%
! GCTTACAACGCCGATGATGG+AGG + chr5_2:26953680-26953699 None:intergenic 55.0%
TGATGTTCCGTGCACTGAGG+TGG - chr5_2:26955589-26955608 Msa0765810:intron 55.0%
GACTCGCCTCAACTTCGTCA+AGG - chr5_2:26956200-26956219 Msa0765810:CDS 55.0%
AGCTCCTGAGACCCAGAAGT+TGG - chr5_2:26956224-26956243 Msa0765810:CDS 55.0%
TCCTGAGACCCAGAAGTTGG+AGG - chr5_2:26956227-26956246 Msa0765810:CDS 55.0%
GACGGAGTTCGGCGGCTTTA+CGG + chr5_2:26953633-26953652 None:intergenic 60.0%
ATCGCAGAGGCGACGGAGTT+CGG + chr5_2:26953644-26953663 None:intergenic 60.0%
AGTGGACATCGCAGAGGCGA+CGG + chr5_2:26953651-26953670 None:intergenic 60.0%
GCGGCTTACAACGCCGATGA+TGG + chr5_2:26953683-26953702 None:intergenic 60.0%
GGATGTGCCACCTCAGTGCA+CGG + chr5_2:26955599-26955618 None:intergenic 60.0%
GCCTCCAACTTCTGGGTCTC+AGG + chr5_2:26956231-26956250 None:intergenic 60.0%
GCACTTGCACGACGAGCAGC+CGG + chr5_2:26954245-26954264 None:intergenic 65.0%
GCAGAGGCGACGGAGTTCGG+CGG + chr5_2:26953641-26953660 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 26953558 26956565 26953558 ID=Msa0765810;Name=Msa0765810
chr5_2 mRNA 26953558 26956565 26953558 ID=Msa0765810-mRNA-1;Parent=Msa0765810;Name=Msa0765810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=16|1|1|1|1|1|9|308|287
chr5_2 exon 26953558 26953945 26953558 ID=Msa0765810-mRNA-1:exon:10628;Parent=Msa0765810-mRNA-1
chr5_2 exon 26954033 26954129 26954033 ID=Msa0765810-mRNA-1:exon:10627;Parent=Msa0765810-mRNA-1
chr5_2 exon 26955262 26955332 26955262 ID=Msa0765810-mRNA-1:exon:10626;Parent=Msa0765810-mRNA-1
chr5_2 exon 26955456 26955543 26955456 ID=Msa0765810-mRNA-1:exon:10625;Parent=Msa0765810-mRNA-1
chr5_2 exon 26955653 26955715 26955653 ID=Msa0765810-mRNA-1:exon:10624;Parent=Msa0765810-mRNA-1
chr5_2 exon 26955798 26955909 26955798 ID=Msa0765810-mRNA-1:exon:10623;Parent=Msa0765810-mRNA-1
chr5_2 exon 26956015 26956095 26956015 ID=Msa0765810-mRNA-1:exon:10622;Parent=Msa0765810-mRNA-1
chr5_2 exon 26956186 26956337 26956186 ID=Msa0765810-mRNA-1:exon:10621;Parent=Msa0765810-mRNA-1
chr5_2 exon 26956430 26956565 26956430 ID=Msa0765810-mRNA-1:exon:10620;Parent=Msa0765810-mRNA-1
chr5_2 five_prime_UTR 26956550 26956565 26956550 ID=Msa0765810-mRNA-1:five_prime_utr;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26956430 26956549 26956430 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26956186 26956337 26956186 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26956015 26956095 26956015 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26955798 26955909 26955798 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26955653 26955715 26955653 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26955456 26955543 26955456 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26955262 26955332 26955262 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26954033 26954129 26954033 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 CDS 26953866 26953945 26953866 ID=Msa0765810-mRNA-1:cds;Parent=Msa0765810-mRNA-1
chr5_2 three_prime_UTR 26953558 26953865 26953558 ID=Msa0765810-mRNA-1:three_prime_utr;Parent=Msa0765810-mRNA-1
Gene Sequence

>Msa0765810

ATGGATATCTCAGAGATCGCAAAGAAACTCAAACTCTCCGATTCCAAACTTCTCATCCGTAAAGCCGCCGAACTCCGTCGCCTCTGCGATGTCCACTTCGATTCCTCCATCATCGGCGTTGGTGAAGTTGCAAAAGCTATTATCTGTATGGAAATCGCTGCAACGAAGCTTGGTGTTCTTTTCGATCGATCTTCTGCGGTGAAGCTTAGTGGAATGTCTGATAGGGGTTATATTAGATCCTACAATTCACTTCACAATACCATTGGTGTCAAGTTGAAGCTTGATGTGAGGGAATTGGCGATTCAATTCGGGTGTGTTCGGATTATACCGTTTGTTCGTGATGGTCTCAAGCTTTATAAGGAACGGTTTCTTTCGTCGTTACCGGCTGCTCGTCGTGCAAGTGCTGATTTTACTCGCCCGGTTTTCATGGCTGTTGCTTTTTATTTATGTTCAAAGAAACATAAGTTGAAAGTTGATAAGATTAAGCTGATTGAACTTTGTGGTACATCTGAATCTGAATTTTCTAGTGTTTCTACTACTATGAAAGACTTGTGCCATGATGTTTTTGGGGTAGCTAAAGAAAAGAAAGATCCTAAAGAAGTGAAGACCAATAGAGATTTGCTTGATGTCTTACCAAGCAAAAGAAAGGCTGAGGATGGTGGCTATTTGTCTGATGATGGGGCAGAGGTTTCAAGTTATAAAAAAAGGAAACAGATGGAAACGCGTGATTATGAGCAATGGAAATCTTCAGTCCTTACATCCAATAAACAAGACAACAAAGAAGTGCCCAGCAAGAAACCAAAACAGACTCGCCTCAACTTCGTCAAGGAAGCTCCTGAGACCCAGAAGTTGGAGGCGATGTAA

Protein sequence

>Msa0765810

MDISEIAKKLKLSDSKLLIRKAAELRRLCDVHFDSSIIGVGEVAKAIICMEIAATKLGVLFDRSSAVKLSGMSDRGYIRSYNSLHNTIGVKLKLDVRELAIQFGCVRIIPFVRDGLKLYKERFLSSLPAARRASADFTRPVFMAVAFYLCSKKHKLKVDKIKLIELCGTSESEFSSVSTTMKDLCHDVFGVAKEKKDPKEVKTNRDLLDVLPSKRKAEDGGYLSDDGAEVSSYKKRKQMETRDYEQWKSSVLTSNKQDNKEVPSKKPKQTRLNFVKEAPETQKLEAM*