AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0593400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0593400 MtrunA17_Chr4g0052681 96.154 546 21 0 1 546 51 596 0.0 1066
Msa0593400 MtrunA17_Chr8g0383081 76.592 534 118 4 1 534 49 575 0.0 836
Msa0593400 MtrunA17_Chr8g0383041 73.827 554 137 3 1 550 52 601 0.0 812
Msa0593400 MtrunA17_Chr8g0383071 77.817 284 63 0 36 319 27 310 4.46e-162 463
Msa0593400 MtrunA17_Chr8g0383051 70.722 263 74 3 1 261 64 325 3.71e-127 375
Msa0593400 MtrunA17_Chr8g0383061 77.729 229 44 2 305 533 1 222 7.87e-114 337
Msa0593400 MtrunA17_Chr8g0383211 37.037 540 312 11 2 527 127 652 1.09e-98 313
Msa0593400 MtrunA17_Chr2g0308821 30.255 509 350 4 2 508 153 658 1.71e-82 270
Msa0593400 MtrunA17_Chr8g0359341 32.283 508 325 6 8 510 215 708 1.17e-80 267
Msa0593400 MtrunA17_Chr8g0383091 79.592 147 25 2 305 451 1 142 4.41e-76 237
Msa0593400 MtrunA17_Chr7g0263231 29.762 504 345 6 8 508 571 1068 1.50e-74 256
Msa0593400 MtrunA17_Chr8g0354631 28.977 528 346 11 2 508 183 702 2.90e-72 245
Msa0593400 MtrunA17_Chr7g0263261 29.365 504 347 6 8 508 512 1009 3.49e-69 241
Msa0593400 MtrunA17_Chr2g0333261 28.295 516 352 8 4 509 172 679 1.19e-68 234
Msa0593400 MtrunA17_Chr4g0003151 27.969 522 346 9 1 508 154 659 2.18e-68 233
Msa0593400 MtrunA17_Chr5g0402891 28.016 514 348 9 8 508 74 578 9.56e-67 228
Msa0593400 MtrunA17_Chr4g0053391 40.604 298 153 5 255 552 1 274 4.72e-65 213
Msa0593400 MtrunA17_Chr4g0052601 35.517 290 172 8 6 284 137 422 3.43e-45 165
Msa0593400 MtrunA17_Chr1g0192041 40.854 164 97 0 214 377 68 231 1.22e-38 142
Msa0593400 MtrunA17_Chr5g0408131 32.530 249 155 5 282 528 1 238 2.13e-35 133
Msa0593400 MtrunA17_Chr4g0062411 23.810 546 362 13 6 540 170 672 9.98e-31 127
Msa0593400 MtrunA17_Chr4g0052611 30.415 217 125 7 299 508 6 203 1.23e-21 94.4
Msa0593400 MtrunA17_Chr8g0383171 31.122 196 123 4 327 520 58 243 2.52e-21 94.0
Msa0593400 MtrunA17_Chr8g0383181 35.227 176 99 5 1 163 117 290 8.70e-21 93.2
Msa0593400 MtrunA17_Chr3g0108001 40.179 112 53 2 441 552 6 103 3.81e-20 85.9
Msa0593400 MtrunA17_Chr8g0390371 39.024 82 46 1 441 522 10 87 7.03e-16 73.2
Msa0593400 MtrunA17_Chr1g0162951 50.980 51 25 0 461 511 1 51 1.32e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0593400 AT3G42170.2 32.245 490 293 7 28 508 193 652 3.72e-83 273
Msa0593400 AT3G42170.1 32.245 490 293 7 28 508 215 674 3.83e-83 273
Msa0593400 AT1G18560.1 23.574 526 338 16 6 508 165 649 1.51e-25 111

Find 95 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGTATTTATTTAATTT+TGG 0.170612 4_2:-19608763 Msa0593400:three_prime_UTR
CTAGGAGGTATAGCAATATT+TGG 0.187929 4_2:+19610619 None:intergenic
TAAAACTATATTTGGTTGTT+AGG 0.235396 4_2:-19608703 Msa0593400:three_prime_UTR
TGAGCAAGTTTGAGAAATAT+TGG 0.282910 4_2:-19609718 Msa0593400:CDS
GGCTTATTGTTATTCAAAAC+TGG 0.302168 4_2:-19609630 Msa0593400:CDS
AGTGGCGGCAACGAGGGTTT+TGG 0.307468 4_2:+19610957 None:intergenic
AAAGATAAAGATATTCTATT+AGG 0.313785 4_2:+19610520 None:intergenic
CAGCAGCTTGTTACCAAAAC+TGG 0.316408 4_2:-19609308 Msa0593400:CDS
TTACTTAGATGAGTCAGTTT+TGG 0.319382 4_2:-19609267 Msa0593400:CDS
ATGTTGGCAGTTTCACAAAA+AGG 0.324708 4_2:+19609866 None:intergenic
ATTTCCGGATCTATCAATAT+TGG 0.329671 4_2:-19609186 Msa0593400:CDS
AAGTTGAGACTTTCCAGTTT+TGG 0.333287 4_2:+19609295 None:intergenic
GAGTAATAATGATCGATTTC+CGG 0.338529 4_2:-19609201 Msa0593400:CDS
TCAAATTGATTCACGCTTTG+TGG 0.339742 4_2:-19610730 Msa0593400:five_prime_UTR
TAAGCCTCGATAACATTTCT+AGG 0.352970 4_2:+19610601 None:intergenic
TGAGGCATTCAAAGAGTAGA+AGG 0.355821 4_2:-19610111 Msa0593400:CDS
ATGCTATTTGAGAAGTATTC+TGG 0.356538 4_2:-19609557 Msa0593400:CDS
ATGTGTTCTAGTTGATAGTT+TGG 0.358328 4_2:-19609783 Msa0593400:CDS
AGATGAAGATATAAAGAAAA+TGG 0.366301 4_2:-19609753 Msa0593400:CDS
GGTTGAGTTGTTGAATGATT+GGG 0.368263 4_2:-19610356 Msa0593400:CDS
ATTTAAGGAGTGCGTTGAAC+AGG 0.385664 4_2:-19610083 Msa0593400:CDS
GTTAATTGTTGTTTAAGCTT+AGG 0.414274 4_2:+19610550 None:intergenic
TATAGTGTCGTTCTTGCATT+GGG 0.424715 4_2:-19609689 Msa0593400:CDS
GAGCAAGCTTCTAATGACTT+TGG 0.429442 4_2:-19608822 Msa0593400:CDS
GAGCAAGTTTGAGAAATATT+GGG 0.431072 4_2:-19609717 Msa0593400:CDS
GTAATGGCATGCTAGAAGAT+TGG 0.432053 4_2:+19609486 None:intergenic
GGTTGGTGGTGTTGATAGTT+CGG 0.434477 4_2:-19610062 Msa0593400:CDS
TTTCTAATGTTTAATGTTGG+AGG 0.437128 4_2:-19608595 Msa0593400:three_prime_UTR
TCTGGCAACAACACTTCTGC+TGG 0.444439 4_2:-19609539 Msa0593400:CDS
GTCTCCGATGTCTCACGAAC+AGG 0.445076 4_2:-19610904 Msa0593400:intron
TGGTTGAGTTGTTGAATGAT+TGG 0.445907 4_2:-19610357 Msa0593400:CDS
ACGGAGAGGCAGACGGGGAG+TGG 0.450858 4_2:+19610939 None:intergenic
TTGCTGTAGCTTCCTTTCAC+AGG 0.452697 4_2:+19609598 None:intergenic
TAGTTCGGTTCGCTTACATT+TGG 0.454929 4_2:-19610047 Msa0593400:CDS
ATCAGAAGCTACGGTGGCAA+TGG 0.457714 4_2:+19609142 None:intergenic
TGTGTTCTAGTTGATAGTTT+GGG 0.462965 4_2:-19609782 Msa0593400:CDS
TAGTTATGAATTATGTCCTT+CGG 0.485944 4_2:-19609933 Msa0593400:CDS
TCAGAAGCTACGGTGGCAAT+GGG 0.504779 4_2:+19609143 None:intergenic
ACGGGGAGTGGCGGCAACGA+GGG 0.512006 4_2:+19610951 None:intergenic
TGACAAATCTCACCACTAGT+AGG 0.517300 4_2:+19610385 None:intergenic
CAGGCCAATATTGATAGATC+CGG 0.521638 4_2:+19609182 None:intergenic
GAATTGGAAGTTAAATAGTA+AGG 0.521677 4_2:-19610434 Msa0593400:CDS
GAGAGGCAGACGGGGAGTGG+CGG 0.522697 4_2:+19610942 None:intergenic
CAAAATGGGTTGTTATGTGA+TGG 0.523049 4_2:-19610244 Msa0593400:CDS
GTGATGACGGAGAGGCAGAC+GGG 0.525982 4_2:+19610933 None:intergenic
CTGGCAACAACACTTCTGCT+GGG 0.527197 4_2:-19609538 Msa0593400:CDS
CTAGAATTTGTACTCGCAGT+TGG 0.528677 4_2:-19609049 Msa0593400:CDS
AAATTAAAGTCTTTATCTCA+TGG 0.532845 4_2:-19609458 Msa0593400:CDS
TTGAAAGAGCTCTTAAATAC+CGG 0.537247 4_2:-19609988 Msa0593400:CDS
TGGTGAGATTTGTCAGAGAA+TGG 0.537446 4_2:-19610377 Msa0593400:CDS
ATTCTAGCTTCCACATTCAT+CGG 0.540479 4_2:+19609065 None:intergenic
GTATAGTGTCGTTCTTGCAT+TGG 0.543770 4_2:-19609690 Msa0593400:CDS
TAAAGATATTCTATTAGGAA+TGG 0.545385 4_2:+19610525 None:intergenic
CGGAGACGGCGGCGTGATGA+CGG 0.550225 4_2:+19610920 None:intergenic
CAAATCTCACCACTAGTAGG+AGG 0.556810 4_2:+19610388 None:intergenic
TGGGAGCGGTTCTTGACCCA+CGG 0.559614 4_2:-19609670 Msa0593400:CDS
GTTGAGTTGTTGAATGATTG+GGG 0.563887 4_2:-19610355 Msa0593400:CDS
CGTGATGACGGAGAGGCAGA+CGG 0.564373 4_2:+19610932 None:intergenic
CTTGTTTACCCTCCTACTAG+TGG 0.565610 4_2:-19610397 Msa0593400:CDS
TATGTCCTTCGGCAGAAGAG+TGG 0.576340 4_2:-19609922 Msa0593400:CDS
TGTCGTTCTTGCATTGGGAG+CGG 0.576416 4_2:-19609684 Msa0593400:CDS
ATATAAAGAAAATGGCTGAA+AGG 0.580537 4_2:-19609745 Msa0593400:CDS
AAGGAGTGCGTTGAACAGGT+TGG 0.580671 4_2:-19610079 Msa0593400:CDS
TGTTGTGCTATTAATCATGT+TGG 0.585834 4_2:+19609850 None:intergenic
AAATTCAAAATCAGAAGCTA+CGG 0.586576 4_2:+19609133 None:intergenic
TGGATGCATCAACCTGTGAA+AGG 0.589753 4_2:-19609610 Msa0593400:CDS
AACTATCAACTAGAACACAT+TGG 0.591548 4_2:+19609786 None:intergenic
AAGGTTGAAAACTTCATCCG+TGG 0.593618 4_2:+19609653 None:intergenic
TGGCAACAACACTTCTGCTG+GGG 0.603497 4_2:-19609537 Msa0593400:CDS
TCGTATGTTGCCGATGAATG+TGG 0.606336 4_2:-19609075 Msa0593400:CDS
GAAAGGGCAAATCATGTGCA+AGG 0.607899 4_2:+19610688 None:intergenic
AAATGGATGTATTACAATGG+TGG 0.610990 4_2:-19609226 Msa0593400:CDS
TTCAAAATCAGAAGCTACGG+TGG 0.614303 4_2:+19609136 None:intergenic
GGGAACACTTAACAAGTCGC+AGG 0.614339 4_2:+19609163 None:intergenic
AATACCTGTTCGTGAGACAT+CGG 0.616720 4_2:+19610900 None:intergenic
GAGTGCGTTGAACAGGTTGG+TGG 0.617258 4_2:-19610076 Msa0593400:CDS
GACGGGGAGTGGCGGCAACG+AGG 0.617549 4_2:+19610950 None:intergenic
AATATTTGGATTTAAGAACT+CGG 0.621104 4_2:+19610633 None:intergenic
GAAAACTTTCGAACGCACAC+CGG 0.621210 4_2:+19609969 None:intergenic
GATGGAGAAGACGACGACGA+TGG 0.621975 4_2:-19608888 Msa0593400:CDS
GAGAGAGTATCATGTTTGTG+AGG 0.628223 4_2:-19610129 Msa0593400:CDS
AAAGATAGAATTTGATAACG+AGG 0.635017 4_2:-19610757 Msa0593400:five_prime_UTR
AGGTTGAAAACTTCATCCGT+GGG 0.636207 4_2:+19609654 None:intergenic
ACCTCCTAGAAATGTTATCG+AGG 0.637447 4_2:-19610605 Msa0593400:CDS
TGATGACGGAGAGGCAGACG+GGG 0.638677 4_2:+19610934 None:intergenic
GAGGCATTCAAAGAGTAGAA+GGG 0.641403 4_2:-19610110 Msa0593400:CDS
TAGTAGGAGGGTAAACAAGA+CGG 0.651039 4_2:+19610401 None:intergenic
AAATCTCACCACTAGTAGGA+GGG 0.654396 4_2:+19610389 None:intergenic
GCGTTAAAACTAGTTAGCTG+TGG 0.661366 4_2:-19610166 Msa0593400:CDS
TGTTCGTGAGACATCGGAGA+CGG 0.666236 4_2:+19610906 None:intergenic
GCCTCGATAACATTTCTAGG+AGG 0.669214 4_2:+19610604 None:intergenic
ACGGCGGCGTGATGACGGAG+AGG 0.685732 4_2:+19610925 None:intergenic
TCGTGAGACATCGGAGACGG+CGG 0.696783 4_2:+19610909 None:intergenic
CAGAAATGGATGTATTACAA+TGG 0.706453 4_2:-19609229 Msa0593400:CDS
ATTCGCGTCAACAAAATGAG+CGG 0.717347 4_2:+19610453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAGTTTTTATATATTTTT+TGG - chr4_2:19610092-19610111 Msa0593400:CDS 10.0%
!!! GTAAGTTTTTATATATTTTT+TGG - chr4_2:19610092-19610111 Msa0593400:CDS 10.0%
!! AAAGATAAAGATATTCTATT+AGG + chr4_2:19609000-19609019 None:intergenic 15.0%
!! TATAAAAACTTACATCAAAT+AGG + chr4_2:19610085-19610104 None:intergenic 15.0%
!!! TGCTTGTATTTATTTAATTT+TGG - chr4_2:19610754-19610773 Msa0593400:five_prime_UTR 15.0%
!!! TAAAACTTTCAATACATTTT+TGG - chr4_2:19610961-19610980 Msa0593400:five_prime_UTR 15.0%
!! AAAGATAAAGATATTCTATT+AGG + chr4_2:19609000-19609019 None:intergenic 15.0%
!! TATAAAAACTTACATCAAAT+AGG + chr4_2:19610085-19610104 None:intergenic 15.0%
!!! TGCTTGTATTTATTTAATTT+TGG - chr4_2:19610754-19610773 Msa0593400:five_prime_UTR 15.0%
!!! TAAAACTTTCAATACATTTT+TGG - chr4_2:19610961-19610980 Msa0593400:five_prime_UTR 15.0%
!! AATATTTGGATTTAAGAACT+CGG + chr4_2:19608887-19608906 None:intergenic 20.0%
!! TAAAGATATTCTATTAGGAA+TGG + chr4_2:19608995-19609014 None:intergenic 20.0%
!!! TATCTTTATCTTTTGATTTG+TGG - chr4_2:19609007-19609026 Msa0593400:intron 20.0%
!!! ATCTTTATCTTTTGATTTGT+GGG - chr4_2:19609008-19609027 Msa0593400:intron 20.0%
!! AACTTGTAAAAAATACAAGT+TGG + chr4_2:19609703-19609722 None:intergenic 20.0%
!!! ACTTGTATTTTTTACAAGTT+TGG - chr4_2:19609703-19609722 Msa0593400:CDS 20.0%
!! AGATGAAGATATAAAGAAAA+TGG - chr4_2:19609764-19609783 Msa0593400:CDS 20.0%
!!! GACTTTAATTTCTTTTGTAA+TGG + chr4_2:19610050-19610069 None:intergenic 20.0%
!! AAATTAAAGTCTTTATCTCA+TGG - chr4_2:19610059-19610078 Msa0593400:CDS 20.0%
!! TTAATAACTAAATTTACCCA+TGG + chr4_2:19610588-19610607 None:intergenic 20.0%
!!! TCATGTTTGTTTTAGATTTA+TGG - chr4_2:19610781-19610800 Msa0593400:five_prime_UTR 20.0%
!! TAAAACTATATTTGGTTGTT+AGG - chr4_2:19610814-19610833 Msa0593400:intron 20.0%
!! AATATTTGGATTTAAGAACT+CGG + chr4_2:19608887-19608906 None:intergenic 20.0%
!! TAAAGATATTCTATTAGGAA+TGG + chr4_2:19608995-19609014 None:intergenic 20.0%
!!! TATCTTTATCTTTTGATTTG+TGG - chr4_2:19609007-19609026 Msa0593400:intron 20.0%
!!! ATCTTTATCTTTTGATTTGT+GGG - chr4_2:19609008-19609027 Msa0593400:intron 20.0%
!! AACTTGTAAAAAATACAAGT+TGG + chr4_2:19609703-19609722 None:intergenic 20.0%
!!! ACTTGTATTTTTTACAAGTT+TGG - chr4_2:19609703-19609722 Msa0593400:CDS 20.0%
!! AGATGAAGATATAAAGAAAA+TGG - chr4_2:19609764-19609783 Msa0593400:CDS 20.0%
!!! GACTTTAATTTCTTTTGTAA+TGG + chr4_2:19610050-19610069 None:intergenic 20.0%
!! AAATTAAAGTCTTTATCTCA+TGG - chr4_2:19610059-19610078 Msa0593400:CDS 20.0%
!! TTAATAACTAAATTTACCCA+TGG + chr4_2:19610588-19610607 None:intergenic 20.0%
!!! TCATGTTTGTTTTAGATTTA+TGG - chr4_2:19610781-19610800 Msa0593400:five_prime_UTR 20.0%
!! TAAAACTATATTTGGTTGTT+AGG - chr4_2:19610814-19610833 Msa0593400:intron 20.0%
!!! AAAGATAGAATTTGATAACG+AGG - chr4_2:19608760-19608779 Msa0593400:three_prime_UTR 25.0%
!!! GTTAATTGTTGTTTAAGCTT+AGG + chr4_2:19608970-19608989 None:intergenic 25.0%
! GAATTGGAAGTTAAATAGTA+AGG - chr4_2:19609083-19609102 Msa0593400:CDS 25.0%
! TAGTTATGAATTATGTCCTT+CGG - chr4_2:19609584-19609603 Msa0593400:CDS 25.0%
!! AAAAAATACAAGTTGGAAGT+AGG + chr4_2:19609696-19609715 None:intergenic 25.0%
! ATATAAAGAAAATGGCTGAA+AGG - chr4_2:19609772-19609791 Msa0593400:CDS 25.0%
!! TTTTGAATAACAATAAGCCA+AGG + chr4_2:19609886-19609905 None:intergenic 25.0%
! ATTACATTTCACAAGTGAAA+AGG + chr4_2:19610169-19610188 None:intergenic 25.0%
! TTTCACTTGTGAAATGTAAT+AGG - chr4_2:19610169-19610188 Msa0593400:CDS 25.0%
! AAATTCAAAATCAGAAGCTA+CGG + chr4_2:19610387-19610406 None:intergenic 25.0%
!! TTCTGATTTTGAATTTTGCA+TGG - chr4_2:19610391-19610410 Msa0593400:CDS 25.0%
!! TCTGATTTTGAATTTTGCAT+GGG - chr4_2:19610392-19610411 Msa0593400:CDS 25.0%
!! TTGTACAATTTTGTTAGTGA+GGG - chr4_2:19610491-19610510 Msa0593400:CDS 25.0%
!!! TTGTATTGTTTTGATAACCA+TGG - chr4_2:19610568-19610587 Msa0593400:CDS 25.0%
!!! TGTATTGTTTTGATAACCAT+GGG - chr4_2:19610569-19610588 Msa0593400:CDS 25.0%
! CTTCAATTATGATATGTAGA+TGG - chr4_2:19610611-19610630 Msa0593400:CDS 25.0%
! AATCGACAATGATGAAAAAA+TGG - chr4_2:19610673-19610692 Msa0593400:five_prime_UTR 25.0%
!!! TGTTTTTAACTTGTAGTATG+TGG - chr4_2:19610888-19610907 Msa0593400:intron 25.0%
!! GCTTTTCTAATGTTTAATGT+TGG - chr4_2:19610919-19610938 Msa0593400:five_prime_UTR 25.0%
! TTTCTAATGTTTAATGTTGG+AGG - chr4_2:19610922-19610941 Msa0593400:five_prime_UTR 25.0%
!!! AAAGATAGAATTTGATAACG+AGG - chr4_2:19608760-19608779 Msa0593400:three_prime_UTR 25.0%
!!! GTTAATTGTTGTTTAAGCTT+AGG + chr4_2:19608970-19608989 None:intergenic 25.0%
! GAATTGGAAGTTAAATAGTA+AGG - chr4_2:19609083-19609102 Msa0593400:CDS 25.0%
! TAGTTATGAATTATGTCCTT+CGG - chr4_2:19609584-19609603 Msa0593400:CDS 25.0%
!! AAAAAATACAAGTTGGAAGT+AGG + chr4_2:19609696-19609715 None:intergenic 25.0%
! ATATAAAGAAAATGGCTGAA+AGG - chr4_2:19609772-19609791 Msa0593400:CDS 25.0%
!! TTTTGAATAACAATAAGCCA+AGG + chr4_2:19609886-19609905 None:intergenic 25.0%
! ATTACATTTCACAAGTGAAA+AGG + chr4_2:19610169-19610188 None:intergenic 25.0%
! TTTCACTTGTGAAATGTAAT+AGG - chr4_2:19610169-19610188 Msa0593400:CDS 25.0%
! AAATTCAAAATCAGAAGCTA+CGG + chr4_2:19610387-19610406 None:intergenic 25.0%
!! TTCTGATTTTGAATTTTGCA+TGG - chr4_2:19610391-19610410 Msa0593400:CDS 25.0%
!! TCTGATTTTGAATTTTGCAT+GGG - chr4_2:19610392-19610411 Msa0593400:CDS 25.0%
!! TTGTACAATTTTGTTAGTGA+GGG - chr4_2:19610491-19610510 Msa0593400:CDS 25.0%
!!! TTGTATTGTTTTGATAACCA+TGG - chr4_2:19610568-19610587 Msa0593400:CDS 25.0%
!!! TGTATTGTTTTGATAACCAT+GGG - chr4_2:19610569-19610588 Msa0593400:CDS 25.0%
! CTTCAATTATGATATGTAGA+TGG - chr4_2:19610611-19610630 Msa0593400:CDS 25.0%
! AATCGACAATGATGAAAAAA+TGG - chr4_2:19610673-19610692 Msa0593400:five_prime_UTR 25.0%
!!! TGTTTTTAACTTGTAGTATG+TGG - chr4_2:19610888-19610907 Msa0593400:intron 25.0%
!! GCTTTTCTAATGTTTAATGT+TGG - chr4_2:19610919-19610938 Msa0593400:five_prime_UTR 25.0%
! TTTCTAATGTTTAATGTTGG+AGG - chr4_2:19610922-19610941 Msa0593400:five_prime_UTR 25.0%
GAGTAGAAGGGAAAAATTTA+AGG - chr4_2:19609419-19609438 Msa0593400:intron 30.0%
TTGAAAGAGCTCTTAAATAC+CGG - chr4_2:19609529-19609548 Msa0593400:CDS 30.0%
! TGTTGTGCTATTAATCATGT+TGG + chr4_2:19609670-19609689 None:intergenic 30.0%
AACTATCAACTAGAACACAT+TGG + chr4_2:19609734-19609753 None:intergenic 30.0%
!! ATGTGTTCTAGTTGATAGTT+TGG - chr4_2:19609734-19609753 Msa0593400:CDS 30.0%
!! TGTGTTCTAGTTGATAGTTT+GGG - chr4_2:19609735-19609754 Msa0593400:CDS 30.0%
TGAGCAAGTTTGAGAAATAT+TGG - chr4_2:19609799-19609818 Msa0593400:CDS 30.0%
GAGCAAGTTTGAGAAATATT+GGG - chr4_2:19609800-19609819 Msa0593400:CDS 30.0%
! GGCTTATTGTTATTCAAAAC+TGG - chr4_2:19609887-19609906 Msa0593400:CDS 30.0%
!! ATGCTATTTGAGAAGTATTC+TGG - chr4_2:19609960-19609979 Msa0593400:CDS 30.0%
!! AAGAACTTTTAAGGAGAATC+AGG - chr4_2:19610007-19610026 Msa0593400:CDS 30.0%
! TTGAATTTGTTTAACCTCGT+TGG - chr4_2:19610140-19610159 Msa0593400:CDS 30.0%
! TTACTTAGATGAGTCAGTTT+TGG - chr4_2:19610250-19610269 Msa0593400:CDS 30.0%
! TTTTCGTTGTTATGCAGAAA+TGG - chr4_2:19610274-19610293 Msa0593400:CDS 30.0%
CAGAAATGGATGTATTACAA+TGG - chr4_2:19610288-19610307 Msa0593400:CDS 30.0%
AAATGGATGTATTACAATGG+TGG - chr4_2:19610291-19610310 Msa0593400:CDS 30.0%
! GAGTAATAATGATCGATTTC+CGG - chr4_2:19610316-19610335 Msa0593400:CDS 30.0%
ATTTCCGGATCTATCAATAT+TGG - chr4_2:19610331-19610350 Msa0593400:CDS 30.0%
! GTTGTACAATTTTGTTAGTG+AGG - chr4_2:19610490-19610509 Msa0593400:CDS 30.0%
! GTTATGATTTCTGCATTTTC+TGG - chr4_2:19610836-19610855 Msa0593400:intron 30.0%
GAGTAGAAGGGAAAAATTTA+AGG - chr4_2:19609419-19609438 Msa0593400:intron 30.0%
TTGAAAGAGCTCTTAAATAC+CGG - chr4_2:19609529-19609548 Msa0593400:CDS 30.0%
! TGTTGTGCTATTAATCATGT+TGG + chr4_2:19609670-19609689 None:intergenic 30.0%
AACTATCAACTAGAACACAT+TGG + chr4_2:19609734-19609753 None:intergenic 30.0%
!! ATGTGTTCTAGTTGATAGTT+TGG - chr4_2:19609734-19609753 Msa0593400:CDS 30.0%
!! TGTGTTCTAGTTGATAGTTT+GGG - chr4_2:19609735-19609754 Msa0593400:CDS 30.0%
TGAGCAAGTTTGAGAAATAT+TGG - chr4_2:19609799-19609818 Msa0593400:CDS 30.0%
GAGCAAGTTTGAGAAATATT+GGG - chr4_2:19609800-19609819 Msa0593400:CDS 30.0%
! GGCTTATTGTTATTCAAAAC+TGG - chr4_2:19609887-19609906 Msa0593400:CDS 30.0%
!! ATGCTATTTGAGAAGTATTC+TGG - chr4_2:19609960-19609979 Msa0593400:CDS 30.0%
!! AAGAACTTTTAAGGAGAATC+AGG - chr4_2:19610007-19610026 Msa0593400:CDS 30.0%
! TTGAATTTGTTTAACCTCGT+TGG - chr4_2:19610140-19610159 Msa0593400:CDS 30.0%
! TTACTTAGATGAGTCAGTTT+TGG - chr4_2:19610250-19610269 Msa0593400:CDS 30.0%
! TTTTCGTTGTTATGCAGAAA+TGG - chr4_2:19610274-19610293 Msa0593400:CDS 30.0%
CAGAAATGGATGTATTACAA+TGG - chr4_2:19610288-19610307 Msa0593400:CDS 30.0%
AAATGGATGTATTACAATGG+TGG - chr4_2:19610291-19610310 Msa0593400:CDS 30.0%
! GAGTAATAATGATCGATTTC+CGG - chr4_2:19610316-19610335 Msa0593400:CDS 30.0%
ATTTCCGGATCTATCAATAT+TGG - chr4_2:19610331-19610350 Msa0593400:CDS 30.0%
! GTTGTACAATTTTGTTAGTG+AGG - chr4_2:19610490-19610509 Msa0593400:CDS 30.0%
! GTTATGATTTCTGCATTTTC+TGG - chr4_2:19610836-19610855 Msa0593400:intron 30.0%
ACAATGCTGAAATGTAACCT+AGG - chr4_2:19608715-19608734 Msa0593400:three_prime_UTR 35.0%
AGACATTTCTTCGAATACCT+AGG + chr4_2:19608735-19608754 None:intergenic 35.0%
! TCAAATTGATTCACGCTTTG+TGG - chr4_2:19608787-19608806 Msa0593400:exon 35.0%
! CTAGGAGGTATAGCAATATT+TGG + chr4_2:19608901-19608920 None:intergenic 35.0%
TAAGCCTCGATAACATTTCT+AGG + chr4_2:19608919-19608938 None:intergenic 35.0%
! TGGTTGAGTTGTTGAATGAT+TGG - chr4_2:19609160-19609179 Msa0593400:CDS 35.0%
! GGTTGAGTTGTTGAATGATT+GGG - chr4_2:19609161-19609180 Msa0593400:CDS 35.0%
! GTTGAGTTGTTGAATGATTG+GGG - chr4_2:19609162-19609181 Msa0593400:CDS 35.0%
!!! AGCCAACTTGTTTTGCAAAA+TGG - chr4_2:19609258-19609277 Msa0593400:CDS 35.0%
!!! GCCAACTTGTTTTGCAAAAT+GGG - chr4_2:19609259-19609278 Msa0593400:CDS 35.0%
! ACCCATTTTGCAAAACAAGT+TGG + chr4_2:19609263-19609282 None:intergenic 35.0%
!! CAAAATGGGTTGTTATGTGA+TGG - chr4_2:19609273-19609292 Msa0593400:CDS 35.0%
ATGTTGGCAGTTTCACAAAA+AGG + chr4_2:19609654-19609673 None:intergenic 35.0%
! TATAGTGTCGTTCTTGCATT+GGG - chr4_2:19609828-19609847 Msa0593400:CDS 35.0%
! TGGGGTTCAAAGAACTTTTA+AGG - chr4_2:19609998-19610017 Msa0593400:CDS 35.0%
! AAGTTGAGACTTTCCAGTTT+TGG + chr4_2:19610225-19610244 None:intergenic 35.0%
!! ATTCTAGCTTCCACATTCAT+CGG + chr4_2:19610455-19610474 None:intergenic 35.0%
ACAATGCTGAAATGTAACCT+AGG - chr4_2:19608715-19608734 Msa0593400:three_prime_UTR 35.0%
AGACATTTCTTCGAATACCT+AGG + chr4_2:19608735-19608754 None:intergenic 35.0%
! TCAAATTGATTCACGCTTTG+TGG - chr4_2:19608787-19608806 Msa0593400:exon 35.0%
! CTAGGAGGTATAGCAATATT+TGG + chr4_2:19608901-19608920 None:intergenic 35.0%
TAAGCCTCGATAACATTTCT+AGG + chr4_2:19608919-19608938 None:intergenic 35.0%
! TGGTTGAGTTGTTGAATGAT+TGG - chr4_2:19609160-19609179 Msa0593400:CDS 35.0%
! GGTTGAGTTGTTGAATGATT+GGG - chr4_2:19609161-19609180 Msa0593400:CDS 35.0%
! GTTGAGTTGTTGAATGATTG+GGG - chr4_2:19609162-19609181 Msa0593400:CDS 35.0%
!!! AGCCAACTTGTTTTGCAAAA+TGG - chr4_2:19609258-19609277 Msa0593400:CDS 35.0%
!!! GCCAACTTGTTTTGCAAAAT+GGG - chr4_2:19609259-19609278 Msa0593400:CDS 35.0%
! ACCCATTTTGCAAAACAAGT+TGG + chr4_2:19609263-19609282 None:intergenic 35.0%
!! CAAAATGGGTTGTTATGTGA+TGG - chr4_2:19609273-19609292 Msa0593400:CDS 35.0%
ATGTTGGCAGTTTCACAAAA+AGG + chr4_2:19609654-19609673 None:intergenic 35.0%
! TATAGTGTCGTTCTTGCATT+GGG - chr4_2:19609828-19609847 Msa0593400:CDS 35.0%
! TGGGGTTCAAAGAACTTTTA+AGG - chr4_2:19609998-19610017 Msa0593400:CDS 35.0%
! AAGTTGAGACTTTCCAGTTT+TGG + chr4_2:19610225-19610244 None:intergenic 35.0%
!! ATTCTAGCTTCCACATTCAT+CGG + chr4_2:19610455-19610474 None:intergenic 35.0%
AATACCTGTTCGTGAGACAT+CGG + chr4_2:19608620-19608639 None:intergenic 40.0%
CTCGAGCTCGAAAAATGAAA+GGG + chr4_2:19608848-19608867 None:intergenic 40.0%
!!! CTTTCATTTTTCGAGCTCGA+GGG - chr4_2:19608847-19608866 Msa0593400:CDS 40.0%
ACCTCCTAGAAATGTTATCG+AGG - chr4_2:19608912-19608931 Msa0593400:intron 40.0%
ATTCGCGTCAACAAAATGAG+CGG + chr4_2:19609067-19609086 None:intergenic 40.0%
! CTCATTTTGTTGACGCGAAT+TGG - chr4_2:19609067-19609086 Msa0593400:CDS 40.0%
TAGTAGGAGGGTAAACAAGA+CGG + chr4_2:19609119-19609138 None:intergenic 40.0%
AAATCTCACCACTAGTAGGA+GGG + chr4_2:19609131-19609150 None:intergenic 40.0%
TGACAAATCTCACCACTAGT+AGG + chr4_2:19609135-19609154 None:intergenic 40.0%
TGGTGAGATTTGTCAGAGAA+TGG - chr4_2:19609140-19609159 Msa0593400:CDS 40.0%
GCGTTAAAACTAGTTAGCTG+TGG - chr4_2:19609351-19609370 Msa0593400:intron 40.0%
!! GAGAGAGTATCATGTTTGTG+AGG - chr4_2:19609388-19609407 Msa0593400:intron 40.0%
! TGAGGCATTCAAAGAGTAGA+AGG - chr4_2:19609406-19609425 Msa0593400:intron 40.0%
! GAGGCATTCAAAGAGTAGAA+GGG - chr4_2:19609407-19609426 Msa0593400:intron 40.0%
! ATTTAAGGAGTGCGTTGAAC+AGG - chr4_2:19609434-19609453 Msa0593400:intron 40.0%
! TAGTTCGGTTCGCTTACATT+TGG - chr4_2:19609470-19609489 Msa0593400:CDS 40.0%
! GTATAGTGTCGTTCTTGCAT+TGG - chr4_2:19609827-19609846 Msa0593400:CDS 40.0%
AGGTTGAAAACTTCATCCGT+GGG + chr4_2:19609866-19609885 None:intergenic 40.0%
AAGGTTGAAAACTTCATCCG+TGG + chr4_2:19609867-19609886 None:intergenic 40.0%
! ACGGATGAAGTTTTCAACCT+TGG - chr4_2:19609866-19609885 Msa0593400:CDS 40.0%
GTAATGGCATGCTAGAAGAT+TGG + chr4_2:19610034-19610053 None:intergenic 40.0%
AAGTGAAAAGGAAACCAACG+AGG + chr4_2:19610157-19610176 None:intergenic 40.0%
!! TTTTGGTAACAAGCTGCTGA+TGG + chr4_2:19610208-19610227 None:intergenic 40.0%
CAGGCCAATATTGATAGATC+CGG + chr4_2:19610338-19610357 None:intergenic 40.0%
TTCAAAATCAGAAGCTACGG+TGG + chr4_2:19610384-19610403 None:intergenic 40.0%
CTAGAATTTGTACTCGCAGT+TGG - chr4_2:19610468-19610487 Msa0593400:CDS 40.0%
GAGCAAGCTTCTAATGACTT+TGG - chr4_2:19610695-19610714 Msa0593400:five_prime_UTR 40.0%
AATACCTGTTCGTGAGACAT+CGG + chr4_2:19608620-19608639 None:intergenic 40.0%
CTCGAGCTCGAAAAATGAAA+GGG + chr4_2:19608848-19608867 None:intergenic 40.0%
!!! CTTTCATTTTTCGAGCTCGA+GGG - chr4_2:19608847-19608866 Msa0593400:CDS 40.0%
ACCTCCTAGAAATGTTATCG+AGG - chr4_2:19608912-19608931 Msa0593400:intron 40.0%
ATTCGCGTCAACAAAATGAG+CGG + chr4_2:19609067-19609086 None:intergenic 40.0%
! CTCATTTTGTTGACGCGAAT+TGG - chr4_2:19609067-19609086 Msa0593400:CDS 40.0%
TAGTAGGAGGGTAAACAAGA+CGG + chr4_2:19609119-19609138 None:intergenic 40.0%
AAATCTCACCACTAGTAGGA+GGG + chr4_2:19609131-19609150 None:intergenic 40.0%
TGACAAATCTCACCACTAGT+AGG + chr4_2:19609135-19609154 None:intergenic 40.0%
TGGTGAGATTTGTCAGAGAA+TGG - chr4_2:19609140-19609159 Msa0593400:CDS 40.0%
GCGTTAAAACTAGTTAGCTG+TGG - chr4_2:19609351-19609370 Msa0593400:intron 40.0%
!! GAGAGAGTATCATGTTTGTG+AGG - chr4_2:19609388-19609407 Msa0593400:intron 40.0%
! TGAGGCATTCAAAGAGTAGA+AGG - chr4_2:19609406-19609425 Msa0593400:intron 40.0%
! GAGGCATTCAAAGAGTAGAA+GGG - chr4_2:19609407-19609426 Msa0593400:intron 40.0%
! ATTTAAGGAGTGCGTTGAAC+AGG - chr4_2:19609434-19609453 Msa0593400:intron 40.0%
! TAGTTCGGTTCGCTTACATT+TGG - chr4_2:19609470-19609489 Msa0593400:CDS 40.0%
! GTATAGTGTCGTTCTTGCAT+TGG - chr4_2:19609827-19609846 Msa0593400:CDS 40.0%
AGGTTGAAAACTTCATCCGT+GGG + chr4_2:19609866-19609885 None:intergenic 40.0%
AAGGTTGAAAACTTCATCCG+TGG + chr4_2:19609867-19609886 None:intergenic 40.0%
! ACGGATGAAGTTTTCAACCT+TGG - chr4_2:19609866-19609885 Msa0593400:CDS 40.0%
GTAATGGCATGCTAGAAGAT+TGG + chr4_2:19610034-19610053 None:intergenic 40.0%
AAGTGAAAAGGAAACCAACG+AGG + chr4_2:19610157-19610176 None:intergenic 40.0%
!! TTTTGGTAACAAGCTGCTGA+TGG + chr4_2:19610208-19610227 None:intergenic 40.0%
CAGGCCAATATTGATAGATC+CGG + chr4_2:19610338-19610357 None:intergenic 40.0%
TTCAAAATCAGAAGCTACGG+TGG + chr4_2:19610384-19610403 None:intergenic 40.0%
CTAGAATTTGTACTCGCAGT+TGG - chr4_2:19610468-19610487 Msa0593400:CDS 40.0%
GAGCAAGCTTCTAATGACTT+TGG - chr4_2:19610695-19610714 Msa0593400:five_prime_UTR 40.0%
GAAAGGGCAAATCATGTGCA+AGG + chr4_2:19608832-19608851 None:intergenic 45.0%
CCTCGAGCTCGAAAAATGAA+AGG + chr4_2:19608849-19608868 None:intergenic 45.0%
!!! CCTTTCATTTTTCGAGCTCG+AGG - chr4_2:19608846-19608865 Msa0593400:CDS 45.0%
! GCCTCGATAACATTTCTAGG+AGG + chr4_2:19608916-19608935 None:intergenic 45.0%
CTTGTTTACCCTCCTACTAG+TGG - chr4_2:19609120-19609139 Msa0593400:CDS 45.0%
CAAATCTCACCACTAGTAGG+AGG + chr4_2:19609132-19609151 None:intergenic 45.0%
!! GGTTGGTGGTGTTGATAGTT+CGG - chr4_2:19609455-19609474 Msa0593400:CDS 45.0%
GAAAACTTTCGAACGCACAC+CGG + chr4_2:19609551-19609570 None:intergenic 45.0%
TGGATGCATCAACCTGTGAA+AGG - chr4_2:19609907-19609926 Msa0593400:CDS 45.0%
TTGCTGTAGCTTCCTTTCAC+AGG + chr4_2:19609922-19609941 None:intergenic 45.0%
!! CAGCAGCTTGTTACCAAAAC+TGG - chr4_2:19610209-19610228 Msa0593400:CDS 45.0%
TCGTATGTTGCCGATGAATG+TGG - chr4_2:19610442-19610461 Msa0593400:CDS 45.0%
GAAAGGGCAAATCATGTGCA+AGG + chr4_2:19608832-19608851 None:intergenic 45.0%
CCTCGAGCTCGAAAAATGAA+AGG + chr4_2:19608849-19608868 None:intergenic 45.0%
!!! CCTTTCATTTTTCGAGCTCG+AGG - chr4_2:19608846-19608865 Msa0593400:CDS 45.0%
! GCCTCGATAACATTTCTAGG+AGG + chr4_2:19608916-19608935 None:intergenic 45.0%
CTTGTTTACCCTCCTACTAG+TGG - chr4_2:19609120-19609139 Msa0593400:CDS 45.0%
CAAATCTCACCACTAGTAGG+AGG + chr4_2:19609132-19609151 None:intergenic 45.0%
!! GGTTGGTGGTGTTGATAGTT+CGG - chr4_2:19609455-19609474 Msa0593400:CDS 45.0%
GAAAACTTTCGAACGCACAC+CGG + chr4_2:19609551-19609570 None:intergenic 45.0%
TGGATGCATCAACCTGTGAA+AGG - chr4_2:19609907-19609926 Msa0593400:CDS 45.0%
TTGCTGTAGCTTCCTTTCAC+AGG + chr4_2:19609922-19609941 None:intergenic 45.0%
!! CAGCAGCTTGTTACCAAAAC+TGG - chr4_2:19610209-19610228 Msa0593400:CDS 45.0%
TCGTATGTTGCCGATGAATG+TGG - chr4_2:19610442-19610461 Msa0593400:CDS 45.0%
!! TAAAAAATTAAAACTATATT+TGG - chr4_2:19610806-19610825 Msa0593400:intron 5.0%
!! TAAAAAATTAAAACTATATT+TGG - chr4_2:19610806-19610825 Msa0593400:intron 5.0%
TGTTCGTGAGACATCGGAGA+CGG + chr4_2:19608614-19608633 None:intergenic 50.0%
!! TTTTCGAGCTCGAGGGAATG+AGG - chr4_2:19608854-19608873 Msa0593400:CDS 50.0%
! AAGGAGTGCGTTGAACAGGT+TGG - chr4_2:19609438-19609457 Msa0593400:intron 50.0%
TATGTCCTTCGGCAGAAGAG+TGG - chr4_2:19609595-19609614 Msa0593400:CDS 50.0%
! CTTTTCCACTCTTCTGCCGA+AGG + chr4_2:19609603-19609622 None:intergenic 50.0%
TGTCGTTCTTGCATTGGGAG+CGG - chr4_2:19609833-19609852 Msa0593400:CDS 50.0%
TCTGGCAACAACACTTCTGC+TGG - chr4_2:19609978-19609997 Msa0593400:CDS 50.0%
CTGGCAACAACACTTCTGCT+GGG - chr4_2:19609979-19609998 Msa0593400:CDS 50.0%
TGGCAACAACACTTCTGCTG+GGG - chr4_2:19609980-19609999 Msa0593400:CDS 50.0%
GGGAACACTTAACAAGTCGC+AGG + chr4_2:19610357-19610376 None:intergenic 50.0%
TCAGAAGCTACGGTGGCAAT+GGG + chr4_2:19610377-19610396 None:intergenic 50.0%
ATCAGAAGCTACGGTGGCAA+TGG + chr4_2:19610378-19610397 None:intergenic 50.0%
TGTTCGTGAGACATCGGAGA+CGG + chr4_2:19608614-19608633 None:intergenic 50.0%
!! TTTTCGAGCTCGAGGGAATG+AGG - chr4_2:19608854-19608873 Msa0593400:CDS 50.0%
! AAGGAGTGCGTTGAACAGGT+TGG - chr4_2:19609438-19609457 Msa0593400:intron 50.0%
TATGTCCTTCGGCAGAAGAG+TGG - chr4_2:19609595-19609614 Msa0593400:CDS 50.0%
! CTTTTCCACTCTTCTGCCGA+AGG + chr4_2:19609603-19609622 None:intergenic 50.0%
TGTCGTTCTTGCATTGGGAG+CGG - chr4_2:19609833-19609852 Msa0593400:CDS 50.0%
TCTGGCAACAACACTTCTGC+TGG - chr4_2:19609978-19609997 Msa0593400:CDS 50.0%
CTGGCAACAACACTTCTGCT+GGG - chr4_2:19609979-19609998 Msa0593400:CDS 50.0%
TGGCAACAACACTTCTGCTG+GGG - chr4_2:19609980-19609999 Msa0593400:CDS 50.0%
GGGAACACTTAACAAGTCGC+AGG + chr4_2:19610357-19610376 None:intergenic 50.0%
TCAGAAGCTACGGTGGCAAT+GGG + chr4_2:19610377-19610396 None:intergenic 50.0%
ATCAGAAGCTACGGTGGCAA+TGG + chr4_2:19610378-19610397 None:intergenic 50.0%
GTCTCCGATGTCTCACGAAC+AGG - chr4_2:19608613-19608632 Msa0593400:three_prime_UTR 55.0%
! GAGTGCGTTGAACAGGTTGG+TGG - chr4_2:19609441-19609460 Msa0593400:intron 55.0%
GATGGAGAAGACGACGACGA+TGG - chr4_2:19610629-19610648 Msa0593400:CDS 55.0%
GTCTCCGATGTCTCACGAAC+AGG - chr4_2:19608613-19608632 Msa0593400:three_prime_UTR 55.0%
! GAGTGCGTTGAACAGGTTGG+TGG - chr4_2:19609441-19609460 Msa0593400:intron 55.0%
GATGGAGAAGACGACGACGA+TGG - chr4_2:19610629-19610648 Msa0593400:CDS 55.0%
! AGTGGCGGCAACGAGGGTTT+TGG + chr4_2:19608563-19608582 None:intergenic 60.0%
!! TGATGACGGAGAGGCAGACG+GGG + chr4_2:19608586-19608605 None:intergenic 60.0%
!! GTGATGACGGAGAGGCAGAC+GGG + chr4_2:19608587-19608606 None:intergenic 60.0%
!! CGTGATGACGGAGAGGCAGA+CGG + chr4_2:19608588-19608607 None:intergenic 60.0%
TCGTGAGACATCGGAGACGG+CGG + chr4_2:19608611-19608630 None:intergenic 60.0%
TGGGAGCGGTTCTTGACCCA+CGG - chr4_2:19609847-19609866 Msa0593400:CDS 60.0%
!! GAGGGTTTTGGCGGGAATCG+CGG + chr4_2:19608551-19608570 None:intergenic 60.0%
! AGTGGCGGCAACGAGGGTTT+TGG + chr4_2:19608563-19608582 None:intergenic 60.0%
!! TGATGACGGAGAGGCAGACG+GGG + chr4_2:19608586-19608605 None:intergenic 60.0%
!! GTGATGACGGAGAGGCAGAC+GGG + chr4_2:19608587-19608606 None:intergenic 60.0%
!! CGTGATGACGGAGAGGCAGA+CGG + chr4_2:19608588-19608607 None:intergenic 60.0%
TCGTGAGACATCGGAGACGG+CGG + chr4_2:19608611-19608630 None:intergenic 60.0%
TGGGAGCGGTTCTTGACCCA+CGG - chr4_2:19609847-19609866 Msa0593400:CDS 60.0%
!! GCGGCAACGAGGGTTTTGGC+GGG + chr4_2:19608559-19608578 None:intergenic 65.0%
!! GGCGGCAACGAGGGTTTTGG+CGG + chr4_2:19608560-19608579 None:intergenic 65.0%
!! GCGGCAACGAGGGTTTTGGC+GGG + chr4_2:19608559-19608578 None:intergenic 65.0%
!! GGCGGCAACGAGGGTTTTGG+CGG + chr4_2:19608560-19608579 None:intergenic 65.0%
ACGGGGAGTGGCGGCAACGA+GGG + chr4_2:19608569-19608588 None:intergenic 70.0%
GAGAGGCAGACGGGGAGTGG+CGG + chr4_2:19608578-19608597 None:intergenic 70.0%
ACGGAGAGGCAGACGGGGAG+TGG + chr4_2:19608581-19608600 None:intergenic 70.0%
!! ACGGCGGCGTGATGACGGAG+AGG + chr4_2:19608595-19608614 None:intergenic 70.0%
CGGAGACGGCGGCGTGATGA+CGG + chr4_2:19608600-19608619 None:intergenic 70.0%
ACGGGGAGTGGCGGCAACGA+GGG + chr4_2:19608569-19608588 None:intergenic 70.0%
GAGAGGCAGACGGGGAGTGG+CGG + chr4_2:19608578-19608597 None:intergenic 70.0%
ACGGAGAGGCAGACGGGGAG+TGG + chr4_2:19608581-19608600 None:intergenic 70.0%
!! ACGGCGGCGTGATGACGGAG+AGG + chr4_2:19608595-19608614 None:intergenic 70.0%
CGGAGACGGCGGCGTGATGA+CGG + chr4_2:19608600-19608619 None:intergenic 70.0%
GACGGGGAGTGGCGGCAACG+AGG + chr4_2:19608570-19608589 None:intergenic 75.0%
GACGGGGAGTGGCGGCAACG+AGG + chr4_2:19608570-19608589 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 19608549 19610990 19608549 ID=Msa0593400;Name=Msa0593400
chr4_2 mRNA 19608549 19610990 19608549 ID=Msa0593400-mRNA-1;Parent=Msa0593400;Name=Msa0593400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=220|1|1|1|1|0.75|4|239|554
chr4_2 exon 19608549 19608909 19608549 ID=Msa0593400-mRNA-1:exon:5612;Parent=Msa0593400-mRNA-1
chr4_2 exon 19609027 19609348 19609027 ID=Msa0593400-mRNA-1:exon:5611;Parent=Msa0593400-mRNA-1
chr4_2 exon 19609448 19610802 19609448 ID=Msa0593400-mRNA-1:exon:5610;Parent=Msa0593400-mRNA-1
chr4_2 exon 19610905 19610990 19610905 ID=Msa0593400-mRNA-1:exon:5609;Parent=Msa0593400-mRNA-1
chr4_2 five_prime_UTR 19610905 19610990 19610905 ID=Msa0593400-mRNA-1:five_prime_utr;Parent=Msa0593400-mRNA-1
chr4_2 five_prime_UTR 19610669 19610802 19610669 ID=Msa0593400-mRNA-1:five_prime_utr;Parent=Msa0593400-mRNA-1
chr4_2 CDS 19609448 19610668 19609448 ID=Msa0593400-mRNA-1:cds;Parent=Msa0593400-mRNA-1
chr4_2 CDS 19609027 19609348 19609027 ID=Msa0593400-mRNA-1:cds;Parent=Msa0593400-mRNA-1
chr4_2 CDS 19608788 19608909 19608788 ID=Msa0593400-mRNA-1:cds;Parent=Msa0593400-mRNA-1
chr4_2 three_prime_UTR 19608549 19608787 19608549 ID=Msa0593400-mRNA-1:three_prime_utr;Parent=Msa0593400-mRNA-1
Gene Sequence

>Msa0593400

ATGAGGAAGTACTCCGAGTTCTTAAATCCAAATATTGCTATACCTCCTAGAAATGTTATCGAGGCTTACGTTTCGCATTTGTATACGAAAGAGAAACCTAAGCTTAAACAACAATTAACTACCATTCCTAATAGAATATCTTTATCTTTTGATTTGTGGGAATCTAACACTACTGAGACTTATATTTGTTTGACCGCTCATTTTGTTGACGCGAATTGGAAGTTAAATAGTAAGGTTGTCAATTTCCGTCTTGTTTACCCTCCTACTAGTGGTGAGATTTGTCAGAGAATGGTTGAGTTGTTGAATGATTGGGGAATAGAGAAAAAGATTTTCTCTCTCACTATTGATGATTCATCTGAGAATGAGATTTTGCAAGAACAATTGAAAAGCCAACTTGTTTTGCAAAATGGGTTGTTATGTGATGGAGAGTTCTTTCGTGTGAATTGTTTTGCACGCGTTTTAAATCAGATCGTTGAAGAAGCGTTAAAACTAGTTAGCTGTGGTGTGCATAAGATTAGAGAGAGTATCATGTTTGTGAGGCATTCAAAGAGTAGAAGGGAAAAATTTAAGGAGTGCGTTGAACAGGTTGGTGGTGTTGATAGTTCGGTTCGCTTACATTTGGATATATCTATGAGTTTGAGTTCAACTTATATGTTGCTTGAAAGAGCTCTTAAATACCGGTGTGCGTTCGAAAGTTTTCACTTGTATGATGATAGTTATGAATTATGTCCTTCGGCAGAAGAGTGGAAAAGAGTACAAAAGATTTGTGCATTCTTGTTGCCTTTTTGTGAAACTGCCAACATGATTAATAGCACAACACGTCCTACTTCCAACTTGTATTTTTTACAAGTTTGGAAAGTCCAATGTGTTCTAGTTGATAGTTTGGGAGATGAAGATGAAGATATAAAGAAAATGGCTGAAAGGATGATGAGCAAGTTTGAGAAATATTGGGATGAGTATAGTGTCGTTCTTGCATTGGGAGCGGTTCTTGACCCACGGATGAAGTTTTCAACCTTGGCTTATTGTTATTCAAAACTGGATGCATCAACCTGTGAAAGGAAGCTACAGCAAGTAAAGAGAAAGTTGTACATGCTATTTGAGAAGTATTCTGGCAACAACACTTCTGCTGGGGTTCAAAGAACTTTTAAGGAGAATCAGGACCAATCTTCTAGCATGCCATTACAAAAGAAATTAAAGTCTTTATCTCATGGCCTATTTGATGAATTGAAAGTGCACCATCAGCAGCTTGTTACCAAAACTGGAAAGTCTCAACTTGATGTTTACTTAGATGAGTCAGTTTTGGATTTTCGTTGTTATGCAGAAATGGATGTATTACAATGGTGGAAGAGTAATAATGATCGATTTCCGGATCTATCAATATTGGCCTGCGACTTGTTAAGTGTTCCCATTGCCACCGTAGCTTCTGATTTTGAATTTTGCATGGGCTCACGTGTCTTTAACAAGTATAAAGATCGTATGTTGCCGATGAATGTGGAAGCTAGAATTTGTACTCGCAGTTGGTTGTACAATTTTGTTAGTGAGGATGGAGAAGACGACGACGATGGCTTTGAAGAAATAAAGAATGAAATCGACAATGATGAAAAAATGGAGCAAGCTTCTAATGACTTTGGTTTTGAAGATAACGATGATGTCGATGATGATTGA

Protein sequence

>Msa0593400

MRKYSEFLNPNIAIPPRNVIEAYVSHLYTKEKPKLKQQLTTIPNRISLSFDLWESNTTETYICLTAHFVDANWKLNSKVVNFRLVYPPTSGEICQRMVELLNDWGIEKKIFSLTIDDSSENEILQEQLKSQLVLQNGLLCDGEFFRVNCFARVLNQIVEEALKLVSCGVHKIRESIMFVRHSKSRREKFKECVEQVGGVDSSVRLHLDISMSLSSTYMLLERALKYRCAFESFHLYDDSYELCPSAEEWKRVQKICAFLLPFCETANMINSTTRPTSNLYFLQVWKVQCVLVDSLGDEDEDIKKMAERMMSKFEKYWDEYSVVLALGAVLDPRMKFSTLAYCYSKLDASTCERKLQQVKRKLYMLFEKYSGNNTSAGVQRTFKENQDQSSSMPLQKKLKSLSHGLFDELKVHHQQLVTKTGKSQLDVYLDESVLDFRCYAEMDVLQWWKSNNDRFPDLSILACDLLSVPIATVASDFEFCMGSRVFNKYKDRMLPMNVEARICTRSWLYNFVSEDGEDDDDGFEEIKNEIDNDEKMEQASNDFGFEDNDDVDDD*