Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727040 | AET02655.1 | 89.691 | 97 | 3 | 1 | 15 | 104 | 1 | 97 | 3.82e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727040 | sp|B5LMP5|RK33_CICAR | 96.667 | 60 | 2 | 0 | 46 | 105 | 7 | 66 | 3.41e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727040 | G7L7R4 | 89.691 | 97 | 3 | 1 | 15 | 104 | 1 | 97 | 1.83e-54 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087880 | Msa0727040 | 0.800662 | 1.297424e-48 | -8.615850e-47 |
| Msa0095140 | Msa0727040 | 0.829097 | 6.226748e-55 | -8.615850e-47 |
| Msa0095240 | Msa0727040 | 0.862280 | 5.666556e-64 | -8.615850e-47 |
| Msa0095270 | Msa0727040 | 0.833611 | 4.828645e-56 | -8.615850e-47 |
| Msa0668630 | Msa0727040 | 0.935326 | 1.010467e-96 | -8.615850e-47 |
| Msa0727040 | Msa0924820 | 0.914996 | 9.942856e-85 | -8.615850e-47 |
| Msa0727040 | Msa0924970 | 0.927231 | 1.567091e-91 | -8.615850e-47 |
| Msa0727040 | Msa0925020 | 0.861531 | 9.610655e-64 | -8.615850e-47 |
| Msa0727040 | Msa0930990 | 0.917915 | 2.964992e-86 | -8.615850e-47 |
| Msa0727040 | Msa0983670 | 0.834763 | 2.482657e-56 | -8.615850e-47 |
| Msa0727040 | Msa1086020 | 0.849842 | 2.494044e-60 | -8.615850e-47 |
| Msa0727040 | Msa1086330 | 0.867732 | 1.101383e-65 | -8.615850e-47 |
| Msa0727040 | Msa1086340 | 0.824032 | 1.005243e-53 | -8.615850e-47 |
| Msa0727040 | Msa1086410 | 0.814524 | 1.474466e-51 | -8.615850e-47 |
| Msa0727040 | Msa1086520 | 0.867547 | 1.262996e-65 | -8.615850e-47 |
| Msa0727040 | Msa1086630 | 0.850420 | 1.717747e-60 | -8.615850e-47 |
| Msa0727040 | Msa1086690 | 0.855175 | 7.525850e-62 | -8.615850e-47 |
| Msa0727040 | Msa1086830 | 0.853115 | 2.956676e-61 | -8.615850e-47 |
| Msa0727040 | Msa1087000 | 0.827380 | 1.615132e-54 | -8.615850e-47 |
| Msa0727040 | Msa1204110 | 0.812341 | 4.450517e-51 | -8.615850e-47 |
| Msa0727040 | Msa1211880 | 0.801963 | 7.025653e-49 | -8.615850e-47 |
| Msa0727040 | Msa1354850 | 0.843654 | 1.226740e-58 | -8.615850e-47 |
| Msa0727040 | Msa1355020 | 0.865307 | 6.495379e-65 | -8.615850e-47 |
| Msa0727040 | Msa1380540 | 0.842951 | 1.889786e-58 | -8.615850e-47 |
| Msa0727040 | Msa1394090 | 0.855085 | 7.994464e-62 | -8.615850e-47 |
| Msa0727040 | Msa1394100 | 0.862529 | 4.750494e-64 | -8.615850e-47 |
| Msa0727040 | Msa1394280 | 0.864507 | 1.156991e-64 | -8.615850e-47 |
| Msa0727040 | Msa1405190 | 0.806654 | 7.406406e-50 | -8.615850e-47 |
| Msa0221860 | Msa0727040 | 0.884731 | 1.492459e-71 | -8.615850e-47 |
| Msa0398610 | Msa0727040 | 0.929531 | 6.081616e-93 | -8.615850e-47 |
| Msa0398620 | Msa0727040 | 0.829900 | 3.973049e-55 | -8.615850e-47 |
| Msa0405520 | Msa0727040 | 0.805299 | 1.427731e-49 | -8.615850e-47 |
| Msa0449900 | Msa0727040 | 0.928522 | 2.563601e-92 | -8.615850e-47 |
| Msa0449930 | Msa0727040 | 0.817403 | 3.357722e-52 | -8.615850e-47 |
| Msa0475830 | Msa0727040 | 0.821704 | 3.503946e-53 | -8.615850e-47 |
| Msa0268220 | Msa0727040 | 0.845828 | 3.183872e-59 | -8.615850e-47 |
| Msa0268340 | Msa0727040 | 0.827540 | 1.478449e-54 | -8.615850e-47 |
| Msa0268460 | Msa0727040 | 0.853865 | 1.800875e-61 | -8.615850e-47 |
| Msa0268500 | Msa0727040 | 0.850201 | 1.979325e-60 | -8.615850e-47 |
| Msa0268680 | Msa0727040 | 0.815496 | 8.973206e-52 | -8.615850e-47 |
| Msa0268900 | Msa0727040 | 0.825374 | 4.855065e-54 | -8.615850e-47 |
| Msa0269100 | Msa0727040 | 0.859244 | 4.729322e-63 | -8.615850e-47 |
| Msa0344240 | Msa0727040 | 0.814306 | 1.647554e-51 | -8.615850e-47 |
| Msa0344250 | Msa0727040 | 0.840340 | 9.224464e-58 | -8.615850e-47 |
| Msa0582570 | Msa0727040 | 0.847501 | 1.110898e-59 | -8.615850e-47 |
| Msa0582580 | Msa0727040 | 0.844914 | 5.628159e-59 | -8.615850e-47 |
| Msa0591290 | Msa0727040 | 0.808915 | 2.449342e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727040 | MtrunA17_CPg0492781 | 98.333 | 60 | 1 | 0 | 46 | 105 | 7 | 66 | 1.19e-38 | 124 |
| Msa0727040 | MtrunA17_Chr4g0015791 | 98.333 | 60 | 1 | 0 | 46 | 105 | 7 | 66 | 1.19e-38 | 124 |
| Msa0727040 | MtrunA17_Chr8g0355601 | 96.610 | 59 | 2 | 0 | 46 | 104 | 7 | 65 | 1.85e-37 | 120 |
| Msa0727040 | MtrunA17_Chr7g0224991 | 95.455 | 44 | 2 | 0 | 62 | 105 | 6 | 49 | 8.03e-26 | 90.9 |
| Msa0727040 | MtrunA17_CPg0492791 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0727040 | MtrunA17_Chr4g0015781 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0727040 | MtrunA17_Chr4g0028951 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0727040 | MtrunA17_Chr8g0355611 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0727040 | MtrunA17_Chr4g0016881 | 96.774 | 31 | 1 | 0 | 15 | 45 | 1 | 31 | 6.36e-15 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727040 | ATCG00640.1 | 75.000 | 60 | 15 | 0 | 46 | 105 | 7 | 66 | 2.54e-29 | 100 |
| Msa0727040 | ATCG00630.1 | 84.375 | 32 | 5 | 0 | 15 | 46 | 1 | 32 | 9.35e-13 | 58.2 |
Find 13 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACGAATAACTGTTATTT+TGG | 0.125276 | 5_1:-28922939 | Msa0727040:CDS |
| AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | 5_1:-28922895 | Msa0727040:CDS |
| AATCGTATGTTTGCAACAAA+AGG | 0.396841 | 5_1:+28922799 | None:intergenic |
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 5_1:-28923579 | Msa0727040:CDS |
| GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | 5_1:-28922894 | Msa0727040:CDS |
| CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | 5_1:-28923562 | Msa0727040:CDS |
| ACACAATACACCTAGTCGAT+TGG | 0.524208 | 5_1:-28922840 | Msa0727040:CDS |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 5_1:-28923572 | Msa0727040:CDS |
| ATCGTATGTTTGCAACAAAA+GGG | 0.538893 | 5_1:+28922800 | None:intergenic |
| TTTCTCAATTCCAATCGACT+AGG | 0.574270 | 5_1:+28922830 | None:intergenic |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 5_1:-28923593 | Msa0727040:CDS |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 5_1:+28923577 | None:intergenic |
| AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | 5_1:-28922893 | Msa0727040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATAAAATTAAT+TGG | - | chr5_1:28923327-28923346 | Msa0727040:intron | 0.0% |
| !! | AAAATTAATATAAAATTAAT+TGG | - | chr5_1:28923327-28923346 | Msa0727040:intron | 0.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr5_1:28922940-28922959 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr5_1:28923066-28923085 | Msa0727040:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr5_1:28923160-28923179 | None:intergenic | 15.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr5_1:28922940-28922959 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr5_1:28923066-28923085 | Msa0727040:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr5_1:28923160-28923179 | None:intergenic | 15.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr5_1:28922787-28922806 | Msa0727040:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr5_1:28922939-28922958 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr5_1:28922941-28922960 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr5_1:28922939-28922958 | Msa0727040:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr5_1:28922994-28923013 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr5_1:28923069-28923088 | Msa0727040:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr5_1:28923075-28923094 | Msa0727040:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr5_1:28923191-28923210 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr5_1:28923491-28923510 | Msa0727040:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr5_1:28923527-28923546 | Msa0727040:intron | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr5_1:28922787-28922806 | Msa0727040:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr5_1:28922939-28922958 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr5_1:28922941-28922960 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr5_1:28922939-28922958 | Msa0727040:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr5_1:28922994-28923013 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr5_1:28923069-28923088 | Msa0727040:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr5_1:28923075-28923094 | Msa0727040:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr5_1:28923191-28923210 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr5_1:28923491-28923510 | Msa0727040:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr5_1:28923527-28923546 | Msa0727040:intron | 20.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr5_1:28923011-28923030 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr5_1:28923195-28923214 | Msa0727040:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr5_1:28923196-28923215 | Msa0727040:intron | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | chr5_1:28923445-28923464 | Msa0727040:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr5_1:28923011-28923030 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr5_1:28923195-28923214 | Msa0727040:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr5_1:28923196-28923215 | Msa0727040:intron | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | chr5_1:28923445-28923464 | Msa0727040:intron | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr5_1:28922790-28922809 | Msa0727040:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr5_1:28922828-28922847 | Msa0727040:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | - | chr5_1:28922900-28922919 | Msa0727040:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr5_1:28922944-28922963 | Msa0727040:intron | 30.0% |
| GAAAAAAAAAACGAACGAAG+AGG | + | chr5_1:28923012-28923031 | None:intergenic | 30.0% | |
| AAAAACTCCTAATTTCACTG+AGG | + | chr5_1:28923101-28923120 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr5_1:28923175-28923194 | Msa0727040:intron | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | chr5_1:28923448-28923467 | Msa0727040:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr5_1:28923481-28923500 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr5_1:28923535-28923554 | Msa0727040:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr5_1:28923536-28923555 | Msa0727040:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr5_1:28923537-28923556 | Msa0727040:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr5_1:28923633-28923652 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr5_1:28923634-28923653 | None:intergenic | 30.0% | |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr5_1:28922790-28922809 | Msa0727040:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr5_1:28922828-28922847 | Msa0727040:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | - | chr5_1:28922900-28922919 | Msa0727040:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr5_1:28922944-28922963 | Msa0727040:intron | 30.0% |
| GAAAAAAAAAACGAACGAAG+AGG | + | chr5_1:28923012-28923031 | None:intergenic | 30.0% | |
| AAAAACTCCTAATTTCACTG+AGG | + | chr5_1:28923101-28923120 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr5_1:28923175-28923194 | Msa0727040:intron | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | chr5_1:28923448-28923467 | Msa0727040:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr5_1:28923481-28923500 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr5_1:28923535-28923554 | Msa0727040:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr5_1:28923536-28923555 | Msa0727040:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr5_1:28923537-28923556 | Msa0727040:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr5_1:28923633-28923652 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr5_1:28923634-28923653 | None:intergenic | 30.0% | |
| ! | TTGATTCTAGTTATTGGCAC+GGG | - | chr5_1:28922945-28922964 | Msa0727040:intron | 35.0% |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr5_1:28923104-28923123 | Msa0727040:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr5_1:28923124-28923143 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr5_1:28923125-28923144 | None:intergenic | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr5_1:28923406-28923425 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | chr5_1:28923455-28923474 | Msa0727040:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr5_1:28923603-28923622 | None:intergenic | 35.0% | |
| ! | TTGATTCTAGTTATTGGCAC+GGG | - | chr5_1:28922945-28922964 | Msa0727040:intron | 35.0% |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr5_1:28923104-28923123 | Msa0727040:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr5_1:28923124-28923143 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr5_1:28923125-28923144 | None:intergenic | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr5_1:28923406-28923425 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | chr5_1:28923455-28923474 | Msa0727040:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr5_1:28923603-28923622 | None:intergenic | 35.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr5_1:28923091-28923110 | Msa0727040:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr5_1:28923113-28923132 | Msa0727040:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr5_1:28923590-28923609 | Msa0727040:CDS | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr5_1:28923091-28923110 | Msa0727040:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr5_1:28923113-28923132 | Msa0727040:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr5_1:28923590-28923609 | Msa0727040:CDS | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr5_1:28922856-28922875 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | chr5_1:28922922-28922941 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGGA+AGG | - | chr5_1:28922949-28922968 | Msa0727040:intron | 45.0% |
| TCTAGTTATTGGCACGGGAA+GGG | - | chr5_1:28922950-28922969 | Msa0727040:intron | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr5_1:28922856-28922875 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | chr5_1:28922922-28922941 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGGA+AGG | - | chr5_1:28922949-28922968 | Msa0727040:intron | 45.0% |
| TCTAGTTATTGGCACGGGAA+GGG | - | chr5_1:28922950-28922969 | Msa0727040:intron | 45.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr5_1:28922837-28922856 | Msa0727040:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr5_1:28922851-28922870 | Msa0727040:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr5_1:28922858-28922877 | Msa0727040:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | chr5_1:28922921-28922940 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGGAAG+GGG | - | chr5_1:28922951-28922970 | Msa0727040:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr5_1:28923462-28923481 | Msa0727040:intron | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr5_1:28922837-28922856 | Msa0727040:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr5_1:28922851-28922870 | Msa0727040:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr5_1:28922858-28922877 | Msa0727040:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | chr5_1:28922921-28922940 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGGAAG+GGG | - | chr5_1:28922951-28922970 | Msa0727040:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr5_1:28923462-28923481 | Msa0727040:intron | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr5_1:28922868-28922887 | Msa0727040:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | chr5_1:28923464-28923483 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | chr5_1:28923461-28923480 | Msa0727040:intron | 55.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr5_1:28922868-28922887 | Msa0727040:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | chr5_1:28923464-28923483 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | chr5_1:28923461-28923480 | Msa0727040:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 28922778 | 28923674 | 28922778 | ID=Msa0727040;Name=Msa0727040 |
| chr5_1 | mRNA | 28922778 | 28923674 | 28922778 | ID=Msa0727040-mRNA-1;Parent=Msa0727040;Name=Msa0727040-mRNA-1;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|105 |
| chr5_1 | exon | 28923542 | 28923674 | 28923542 | ID=Msa0727040-mRNA-1:exon:9970;Parent=Msa0727040-mRNA-1 |
| chr5_1 | exon | 28922778 | 28922962 | 28922778 | ID=Msa0727040-mRNA-1:exon:9969;Parent=Msa0727040-mRNA-1 |
| chr5_1 | CDS | 28923542 | 28923674 | 28923542 | ID=Msa0727040-mRNA-1:cds;Parent=Msa0727040-mRNA-1 |
| chr5_1 | CDS | 28922778 | 28922962 | 28922778 | ID=Msa0727040-mRNA-1:cds;Parent=Msa0727040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
