Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591290 | YP_009141653.1 | 100.000 | 131 | 0 | 0 | 1 | 131 | 25 | 155 | 1.21e-90 | 269 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591290 | sp|P07135|RR7_SOYBN | 96.947 | 131 | 4 | 0 | 1 | 131 | 25 | 155 | 1.13e-90 | 262 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0095190 | Msa0591290 | 0.815359 | 9.628167e-52 | -8.615850e-47 |
Msa0370210 | Msa0591290 | 0.803431 | 3.497073e-49 | -8.615850e-47 |
Msa0398610 | Msa0591290 | 0.825380 | 4.838787e-54 | -8.615850e-47 |
Msa0405420 | Msa0591290 | 0.810789 | 9.677894e-51 | -8.615850e-47 |
Msa0405430 | Msa0591290 | 0.919129 | 6.620065e-87 | -8.615850e-47 |
Msa0405440 | Msa0591290 | 0.822530 | 2.254882e-53 | -8.615850e-47 |
Msa0405510 | Msa0591290 | 0.805089 | 1.579920e-49 | -8.615850e-47 |
Msa0405520 | Msa0591290 | 0.909735 | 4.101186e-82 | -8.615850e-47 |
Msa0405530 | Msa0591290 | 0.806760 | 7.035189e-50 | -8.615850e-47 |
Msa0449900 | Msa0591290 | 0.815532 | 8.808315e-52 | -8.615850e-47 |
Msa0263770 | Msa0591290 | 0.897383 | 1.483274e-76 | -8.615850e-47 |
Msa0268220 | Msa0591290 | 0.819562 | 1.088223e-52 | -8.615850e-47 |
Msa0268260 | Msa0591290 | 0.847005 | 1.519893e-59 | -8.615850e-47 |
Msa0268270 | Msa0591290 | 0.812554 | 3.999421e-51 | -8.615850e-47 |
Msa0268300 | Msa0591290 | 0.811517 | 6.730455e-51 | -8.615850e-47 |
Msa0268310 | Msa0591290 | 0.832070 | 1.165913e-55 | -8.615850e-47 |
Msa0268460 | Msa0591290 | 0.805668 | 1.194623e-49 | -8.615850e-47 |
Msa0268500 | Msa0591290 | 0.800701 | 1.274058e-48 | -8.615850e-47 |
Msa0268560 | Msa0591290 | 0.800443 | 1.438059e-48 | -8.615850e-47 |
Msa0268580 | Msa0591290 | 0.813092 | 3.049122e-51 | -8.615850e-47 |
Msa0268630 | Msa0591290 | 0.807057 | 6.087535e-50 | -8.615850e-47 |
Msa0268760 | Msa0591290 | 0.822728 | 2.028670e-53 | -8.615850e-47 |
Msa0269130 | Msa0591290 | 0.813280 | 2.771914e-51 | -8.615850e-47 |
Msa0269140 | Msa0591290 | 0.841800 | 3.814505e-58 | -8.615850e-47 |
Msa0269150 | Msa0591290 | 0.809273 | 2.053346e-50 | -8.615850e-47 |
Msa0344250 | Msa0591290 | 0.817915 | 2.573655e-52 | -8.615850e-47 |
Msa0344310 | Msa0591290 | 0.805905 | 1.065099e-49 | -8.615850e-47 |
Msa0582570 | Msa0591290 | 0.809709 | 1.655144e-50 | -8.615850e-47 |
Msa0582580 | Msa0591290 | 0.815208 | 1.040215e-51 | -8.615850e-47 |
Msa0582640 | Msa0591290 | 0.815696 | 8.099454e-52 | -8.615850e-47 |
Msa0582760 | Msa0591290 | 0.803666 | 3.125814e-49 | -8.615850e-47 |
Msa0582820 | Msa0591290 | 0.805653 | 1.203377e-49 | -8.615850e-47 |
Msa0582930 | Msa0591290 | 0.814967 | 1.176132e-51 | -8.615850e-47 |
Msa0591290 | Msa0591310 | 0.817349 | 3.452721e-52 | -8.615850e-47 |
Msa0591290 | Msa0591350 | 0.875313 | 3.400646e-68 | -8.615850e-47 |
Msa0591290 | Msa0591360 | 0.802947 | 4.405347e-49 | -8.615850e-47 |
Msa0591290 | Msa0591370 | 0.812804 | 3.526573e-51 | -8.615850e-47 |
Msa0591290 | Msa0591380 | 0.816660 | 4.930526e-52 | -8.615850e-47 |
Msa0591290 | Msa0668630 | 0.828530 | 8.542568e-55 | -8.615850e-47 |
Msa0591290 | Msa0727040 | 0.808915 | 2.449342e-50 | -8.615850e-47 |
Msa0591290 | Msa0867680 | 0.816266 | 6.042358e-52 | -8.615850e-47 |
Msa0591290 | Msa0867690 | 0.833910 | 4.064227e-56 | -8.615850e-47 |
Msa0591290 | Msa0876530 | 0.845220 | 4.651490e-59 | -8.615850e-47 |
Msa0591290 | Msa0908230 | 0.859411 | 4.213463e-63 | -8.615850e-47 |
Msa0591290 | Msa0908240 | 0.811798 | 5.846434e-51 | -8.615850e-47 |
Msa0591290 | Msa0908310 | 0.842551 | 2.413896e-58 | -8.615850e-47 |
Msa0591290 | Msa0908370 | 0.834534 | 2.834726e-56 | -8.615850e-47 |
Msa0591290 | Msa0908430 | 0.807201 | 5.673917e-50 | -8.615850e-47 |
Msa0591290 | Msa0908440 | 0.851074 | 1.124226e-60 | -8.615850e-47 |
Msa0591290 | Msa0908450 | 0.820686 | 6.015606e-53 | -8.615850e-47 |
Msa0591290 | Msa0908530 | 0.841978 | 3.423307e-58 | -8.615850e-47 |
Msa0591290 | Msa0908540 | 0.820818 | 5.609645e-53 | -8.615850e-47 |
Msa0591290 | Msa0908600 | 0.844993 | 5.357342e-59 | -8.615850e-47 |
Msa0591290 | Msa0908660 | 0.841277 | 5.239895e-58 | -8.615850e-47 |
Msa0591290 | Msa0908670 | 0.809018 | 2.327629e-50 | -8.615850e-47 |
Msa0591290 | Msa0908720 | 0.836252 | 1.043492e-56 | -8.615850e-47 |
Msa0591290 | Msa0908730 | 0.826527 | 2.583718e-54 | -8.615850e-47 |
Msa0591290 | Msa0924820 | 0.839837 | 1.247513e-57 | -8.615850e-47 |
Msa0591290 | Msa0924890 | 0.806913 | 6.530805e-50 | -8.615850e-47 |
Msa0591290 | Msa0924930 | 0.816507 | 5.337364e-52 | -8.615850e-47 |
Msa0591290 | Msa0924970 | 0.814357 | 1.605321e-51 | -8.615850e-47 |
Msa0591290 | Msa0925020 | 0.826099 | 3.266973e-54 | -8.615850e-47 |
Msa0591290 | Msa0925100 | 0.850510 | 1.621037e-60 | -8.615850e-47 |
Msa0591290 | Msa0930990 | 0.821084 | 4.872795e-53 | -8.615850e-47 |
Msa0591290 | Msa0983630 | 0.830199 | 3.358900e-55 | -8.615850e-47 |
Msa0591290 | Msa0983640 | 0.810838 | 9.446076e-51 | -8.615850e-47 |
Msa0591290 | Msa0983670 | 0.800128 | 1.666436e-48 | -8.615850e-47 |
Msa0591290 | Msa1022050 | 0.823491 | 1.346320e-53 | -8.615850e-47 |
Msa0591290 | Msa1086080 | 0.809109 | 2.225595e-50 | -8.615850e-47 |
Msa0591290 | Msa1086190 | 0.803501 | 3.382254e-49 | -8.615850e-47 |
Msa0591290 | Msa1086260 | 0.805750 | 1.148241e-49 | -8.615850e-47 |
Msa0591290 | Msa1086330 | 0.817780 | 2.761313e-52 | -8.615850e-47 |
Msa0591290 | Msa1086520 | 0.816175 | 6.331576e-52 | -8.615850e-47 |
Msa0591290 | Msa1086550 | 0.811419 | 7.068277e-51 | -8.615850e-47 |
Msa0591290 | Msa1086560 | 0.800408 | 1.461841e-48 | -8.615850e-47 |
Msa0591290 | Msa1086590 | 0.833629 | 4.778586e-56 | -8.615850e-47 |
Msa0591290 | Msa1086600 | 0.818208 | 2.210104e-52 | -8.615850e-47 |
Msa0591290 | Msa1086630 | 0.813960 | 1.964463e-51 | -8.615850e-47 |
Msa0591290 | Msa1086690 | 0.806164 | 9.396433e-50 | -8.615850e-47 |
Msa0591290 | Msa1086720 | 0.807582 | 4.710099e-50 | -8.615850e-47 |
Msa0591290 | Msa1086730 | 0.828526 | 8.558554e-55 | -8.615850e-47 |
Msa0591290 | Msa1086740 | 0.807136 | 5.856989e-50 | -8.615850e-47 |
Msa0591290 | Msa1086790 | 0.832927 | 7.150012e-56 | -8.615850e-47 |
Msa0591290 | Msa1086800 | 0.805032 | 1.623363e-49 | -8.615850e-47 |
Msa0591290 | Msa1086830 | 0.825751 | 3.951670e-54 | -8.615850e-47 |
Msa0591290 | Msa1086970 | 0.815748 | 7.884098e-52 | -8.615850e-47 |
Msa0591290 | Msa1087040 | 0.828035 | 1.124331e-54 | -8.615850e-47 |
Msa0591290 | Msa1087050 | 0.804646 | 1.954465e-49 | -8.615850e-47 |
Msa0591290 | Msa1087110 | 0.803352 | 3.631758e-49 | -8.615850e-47 |
Msa0591290 | Msa1087120 | 0.817719 | 2.849757e-52 | -8.615850e-47 |
Msa0591290 | Msa1305090 | 0.801989 | 6.939076e-49 | -8.615850e-47 |
Msa0591290 | Msa1354420 | 0.823310 | 1.483643e-53 | -8.615850e-47 |
Msa0591290 | Msa1354430 | 0.807088 | 5.995277e-50 | -8.615850e-47 |
Msa0591290 | Msa1354480 | 0.813491 | 2.491727e-51 | -8.615850e-47 |
Msa0591290 | Msa1354490 | 0.846851 | 1.674615e-59 | -8.615850e-47 |
Msa0591290 | Msa1354500 | 0.808083 | 3.686581e-50 | -8.615850e-47 |
Msa0591290 | Msa1354550 | 0.821615 | 3.674244e-53 | -8.615850e-47 |
Msa0591290 | Msa1354610 | 0.812099 | 5.026335e-51 | -8.615850e-47 |
Msa0591290 | Msa1354620 | 0.852465 | 4.534627e-61 | -8.615850e-47 |
Msa0591290 | Msa1354630 | 0.820042 | 8.451065e-53 | -8.615850e-47 |
Msa0591290 | Msa1354690 | 0.844903 | 5.665314e-59 | -8.615850e-47 |
Msa0591290 | Msa1354740 | 0.813734 | 2.203149e-51 | -8.615850e-47 |
Msa0591290 | Msa1354750 | 0.845766 | 3.308147e-59 | -8.615850e-47 |
Msa0591290 | Msa1354760 | 0.806737 | 7.112931e-50 | -8.615850e-47 |
Msa0591290 | Msa1354810 | 0.835746 | 1.402576e-56 | -8.615850e-47 |
Msa0591290 | Msa1354820 | 0.829617 | 4.657562e-55 | -8.615850e-47 |
Msa0591290 | Msa1354850 | 0.800414 | 1.457455e-48 | -8.615850e-47 |
Msa0591290 | Msa1354930 | 0.811569 | 6.557421e-51 | -8.615850e-47 |
Msa0591290 | Msa1354980 | 0.818917 | 1.526120e-52 | -8.615850e-47 |
Msa0591290 | Msa1354990 | 0.814299 | 1.653246e-51 | -8.615850e-47 |
Msa0591290 | Msa1355020 | 0.820087 | 8.254644e-53 | -8.615850e-47 |
Msa0591290 | Msa1365890 | 0.837164 | 6.107572e-57 | -8.615850e-47 |
Msa0591290 | Msa1365950 | 0.818796 | 1.626089e-52 | -8.615850e-47 |
Msa0591290 | Msa1365960 | 0.815821 | 7.595440e-52 | -8.615850e-47 |
Msa0591290 | Msa1365970 | 0.819656 | 1.035959e-52 | -8.615850e-47 |
Msa0591290 | Msa1366080 | 0.832894 | 7.285390e-56 | -8.615850e-47 |
Msa0591290 | Msa1368230 | 0.837140 | 6.196658e-57 | -8.615850e-47 |
Msa0591290 | Msa1368240 | 0.809603 | 1.743562e-50 | -8.615850e-47 |
Msa0591290 | Msa1380620 | 0.806943 | 6.434582e-50 | -8.615850e-47 |
Msa0591290 | Msa1385410 | 0.834857 | 2.350966e-56 | -8.615850e-47 |
Msa0591290 | Msa1391090 | 0.817796 | 2.737977e-52 | -8.615850e-47 |
Msa0591290 | Msa1391100 | 0.850666 | 1.464827e-60 | -8.615850e-47 |
Msa0591290 | Msa1391110 | 0.802783 | 4.762555e-49 | -8.615850e-47 |
Msa0591290 | Msa1391160 | 0.844101 | 9.313659e-59 | -8.615850e-47 |
Msa0591290 | Msa1391170 | 0.811284 | 7.562674e-51 | -8.615850e-47 |
Msa0591290 | Msa1391220 | 0.820692 | 5.997164e-53 | -8.615850e-47 |
Msa0591290 | Msa1391230 | 0.835566 | 1.557873e-56 | -8.615850e-47 |
Msa0591290 | Msa1391240 | 0.824090 | 9.742858e-54 | -8.615850e-47 |
Msa0591290 | Msa1394040 | 0.802827 | 4.663247e-49 | -8.615850e-47 |
Msa0591290 | Msa1394090 | 0.818264 | 2.146138e-52 | -8.615850e-47 |
Msa0591290 | Msa1394100 | 0.804707 | 1.898349e-49 | -8.615850e-47 |
Msa0591290 | Msa1394170 | 0.804414 | 2.185162e-49 | -8.615850e-47 |
Msa0591290 | Msa1394220 | 0.817952 | 2.524318e-52 | -8.615850e-47 |
Msa0591290 | Msa1394230 | 0.812485 | 4.139773e-51 | -8.615850e-47 |
Msa0591290 | Msa1394280 | 0.803618 | 3.198354e-49 | -8.615850e-47 |
Msa0591290 | Msa1460120 | 0.884325 | 2.112632e-71 | -8.615850e-47 |
Msa0591290 | Msa1460130 | 0.837516 | 4.963771e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591290 | MtrunA17_CPg0492421 | 91.729 | 133 | 9 | 1 | 1 | 131 | 25 | 157 | 1.30e-85 | 246 |
Msa0591290 | MtrunA17_Chr4g0016101 | 91.729 | 133 | 9 | 1 | 1 | 131 | 25 | 157 | 1.30e-85 | 246 |
Msa0591290 | MtrunA17_Chr3g0090841 | 91.729 | 133 | 9 | 1 | 1 | 131 | 25 | 157 | 1.30e-85 | 246 |
Msa0591290 | MtrunA17_Chr4g0002541 | 83.333 | 60 | 10 | 0 | 1 | 60 | 1 | 60 | 3.60e-30 | 103 |
Msa0591290 | MtrunA17_Chr4g0057401 | 87.500 | 40 | 5 | 0 | 92 | 131 | 1 | 40 | 1.06e-17 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591290 | ATCG00900.1 | 95.420 | 131 | 6 | 0 | 1 | 131 | 25 | 155 | 7.02e-91 | 260 |
Msa0591290 | ATCG01240.1 | 95.420 | 131 | 6 | 0 | 1 | 131 | 25 | 155 | 7.02e-91 | 260 |
Msa0591290 | ATMG01270.1 | 33.824 | 136 | 80 | 3 | 2 | 131 | 15 | 146 | 3.86e-18 | 75.5 |
Msa0591290 | AT2G07696.1 | 33.824 | 136 | 80 | 3 | 2 | 131 | 15 | 146 | 3.86e-18 | 75.5 |
Find 24 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCCATTCGTTGGTTATT+AGG | 0.268444 | 4_2:+15589114 | Msa0591290:CDS |
CATCAAGTTCCCGTTGAAAT+AGG | 0.307921 | 4_2:+15589072 | Msa0591290:CDS |
AAAACGTCCAGGTCGAAATA+TGG | 0.317789 | 4_2:+15589146 | Msa0591290:CDS |
CAAATTAAGTTCCGAATTAG+TGG | 0.342047 | 4_2:+15589173 | Msa0591290:CDS |
TGGCGATGCCATACGCAAAA+AGG | 0.366109 | 4_2:+15589212 | Msa0591290:CDS |
TTTGGCAGCATCCACTAATT+CGG | 0.404543 | 4_2:-15589184 | Msa0591280:intron |
GCTTGACGTAAAACAGATAG+TGG | 0.426676 | 4_2:-15588991 | Msa0591280:intron |
GTAAAAGCAAGACGCGTAAA+CGG | 0.427761 | 4_2:+15589042 | Msa0591290:CDS |
TATGGCATCGCCATTCCCTT+TGG | 0.436234 | 4_2:-15589202 | Msa0591280:intron |
TGTGTGGATCCTATTTCAAC+GGG | 0.470768 | 4_2:-15589081 | Msa0591280:intron |
TTATCTATCGAGCTATGAAA+AGG | 0.512086 | 4_2:+15588944 | Msa0591290:CDS |
GAAAAGCACTTGCCATTCGT+TGG | 0.526859 | 4_2:+15589106 | Msa0591290:CDS |
GTGGATGCTGCCAAAGGGAA+TGG | 0.532446 | 4_2:+15589192 | Msa0591290:CDS |
GGCGCATCCCGAAAACGTCC+AGG | 0.540732 | 4_2:+15589135 | Msa0591290:CDS |
AAAGGAAGAGACTCATAGAA+TGG | 0.548096 | 4_2:+15589230 | Msa0591290:CDS |
TTGTGTGGATCCTATTTCAA+CGG | 0.548545 | 4_2:-15589082 | Msa0591280:intron |
AATTAGTGGATGCTGCCAAA+GGG | 0.575951 | 4_2:+15589187 | Msa0591290:CDS |
GAATTAGTGGATGCTGCCAA+AGG | 0.584526 | 4_2:+15589186 | Msa0591290:CDS |
AGAGACTCATAGAATGGCAG+AGG | 0.593635 | 4_2:+15589236 | Msa0591290:CDS |
TTGAAAGCCATATTTCGACC+TGG | 0.605724 | 4_2:-15589153 | Msa0591280:intron |
TGCGCCTAATAACCAACGAA+TGG | 0.620213 | 4_2:-15589118 | Msa0591280:intron |
GTTAACCGTATTATGAAACA+CGG | 0.650772 | 4_2:+15588898 | Msa0591290:CDS |
TTTACGTCAAGCAATACGTG+GGG | 0.729232 | 4_2:+15589002 | Msa0591290:CDS |
GTTGAAATAGGATCCACACA+AGG | 0.731975 | 4_2:+15589084 | Msa0591290:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTTTCCGTGTTTCATAATA+CGG | - | chr4_2:15588906-15588925 | Msa0591280:intron | 25.0% |
GTTAACCGTATTATGAAACA+CGG | + | chr4_2:15588898-15588917 | Msa0591290:CDS | 30.0% | |
GAAACACGGAAAAAAATCAT+TGG | + | chr4_2:15588912-15588931 | Msa0591290:CDS | 30.0% | |
TTATCTATCGAGCTATGAAA+AGG | + | chr4_2:15588944-15588963 | Msa0591290:CDS | 30.0% | |
!! | TCTTGCTTTTACTGCTATAT+CGG | - | chr4_2:15589034-15589053 | Msa0591280:intron | 30.0% |
CAAATTAAGTTCCGAATTAG+TGG | + | chr4_2:15589173-15589192 | Msa0591290:CDS | 30.0% | |
! | TTTTACGTCAAGCAATACGT+GGG | + | chr4_2:15589001-15589020 | Msa0591290:CDS | 35.0% |
!! | CTTGCTTTTACTGCTATATC+GGG | - | chr4_2:15589033-15589052 | Msa0591280:intron | 35.0% |
TTGTGTGGATCCTATTTCAA+CGG | - | chr4_2:15589085-15589104 | Msa0591280:intron | 35.0% | |
AAAGGAAGAGACTCATAGAA+TGG | + | chr4_2:15589230-15589249 | Msa0591290:CDS | 35.0% | |
GCTTGACGTAAAACAGATAG+TGG | - | chr4_2:15588994-15589013 | Msa0591280:intron | 40.0% | |
! | GTTTTACGTCAAGCAATACG+TGG | + | chr4_2:15589000-15589019 | Msa0591290:CDS | 40.0% |
TTTACGTCAAGCAATACGTG+GGG | + | chr4_2:15589002-15589021 | Msa0591290:CDS | 40.0% | |
GTAAAAGCAAGACGCGTAAA+CGG | + | chr4_2:15589042-15589061 | Msa0591290:CDS | 40.0% | |
CATCAAGTTCCCGTTGAAAT+AGG | + | chr4_2:15589072-15589091 | Msa0591290:CDS | 40.0% | |
TGTGTGGATCCTATTTCAAC+GGG | - | chr4_2:15589084-15589103 | Msa0591280:intron | 40.0% | |
GTTGAAATAGGATCCACACA+AGG | + | chr4_2:15589084-15589103 | Msa0591290:CDS | 40.0% | |
! | CTTGCCATTCGTTGGTTATT+AGG | + | chr4_2:15589114-15589133 | Msa0591290:CDS | 40.0% |
! | TATTTCGACCTGGACGTTTT+CGG | - | chr4_2:15589146-15589165 | Msa0591280:intron | 40.0% |
AAAACGTCCAGGTCGAAATA+TGG | + | chr4_2:15589146-15589165 | Msa0591290:CDS | 40.0% | |
TTGAAAGCCATATTTCGACC+TGG | - | chr4_2:15589156-15589175 | Msa0591280:intron | 40.0% | |
TTTGGCAGCATCCACTAATT+CGG | - | chr4_2:15589187-15589206 | Msa0591280:intron | 40.0% | |
! | AATTAGTGGATGCTGCCAAA+GGG | + | chr4_2:15589187-15589206 | Msa0591290:CDS | 40.0% |
! | AGTCTCTTCCTTTTTGCGTA+TGG | - | chr4_2:15589223-15589242 | Msa0591280:intron | 40.0% |
!! | GAAAAGCACTTGCCATTCGT+TGG | + | chr4_2:15589106-15589125 | Msa0591290:CDS | 45.0% |
TGCGCCTAATAACCAACGAA+TGG | - | chr4_2:15589121-15589140 | Msa0591280:intron | 45.0% | |
! | ATTTCGACCTGGACGTTTTC+GGG | - | chr4_2:15589145-15589164 | Msa0591280:intron | 45.0% |
! | GAATTAGTGGATGCTGCCAA+AGG | + | chr4_2:15589186-15589205 | Msa0591290:CDS | 45.0% |
AGAGACTCATAGAATGGCAG+AGG | + | chr4_2:15589236-15589255 | Msa0591290:CDS | 45.0% | |
! | GGCAAGTGCTTTTCCTTGTG+TGG | - | chr4_2:15589100-15589119 | Msa0591280:intron | 50.0% |
TATGGCATCGCCATTCCCTT+TGG | - | chr4_2:15589205-15589224 | Msa0591280:intron | 50.0% | |
TGGCGATGCCATACGCAAAA+AGG | + | chr4_2:15589212-15589231 | Msa0591290:CDS | 50.0% | |
GTGGATGCTGCCAAAGGGAA+TGG | + | chr4_2:15589192-15589211 | Msa0591290:CDS | 55.0% | |
GGCGCATCCCGAAAACGTCC+AGG | + | chr4_2:15589135-15589154 | Msa0591290:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 15588892 | 15589287 | 15588892 | ID=Msa0591290;Name=Msa0591290 |
chr4_2 | mRNA | 15588892 | 15589287 | 15588892 | ID=Msa0591290-mRNA-1;Parent=Msa0591290;Name=Msa0591290-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|131 |
chr4_2 | exon | 15588892 | 15589287 | 15588892 | ID=Msa0591290-mRNA-1:exon:4490;Parent=Msa0591290-mRNA-1 |
chr4_2 | CDS | 15588892 | 15589287 | 15588892 | ID=Msa0591290-mRNA-1:cds;Parent=Msa0591290-mRNA-1 |
Gene Sequence |
Protein sequence |