Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398610 | AET02655.1 | 89.691 | 97 | 3 | 1 | 15 | 104 | 1 | 97 | 3.82e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398610 | sp|B5LMP5|RK33_CICAR | 96.667 | 60 | 2 | 0 | 46 | 105 | 7 | 66 | 3.41e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398610 | G7L7R4 | 89.691 | 97 | 3 | 1 | 15 | 104 | 1 | 97 | 1.83e-54 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087880 | Msa0398610 | 0.819421 | 1.171996e-52 | -8.615850e-47 |
| Msa0095140 | Msa0398610 | 0.843267 | 1.556626e-58 | -8.615850e-47 |
| Msa0095240 | Msa0398610 | 0.866111 | 3.618727e-65 | -8.615850e-47 |
| Msa0095270 | Msa0398610 | 0.833901 | 4.086351e-56 | -8.615850e-47 |
| Msa0156780 | Msa0398610 | 0.805149 | 1.534257e-49 | -8.615850e-47 |
| Msa0221860 | Msa0398610 | 0.884399 | 1.983333e-71 | -8.615850e-47 |
| Msa0231310 | Msa0398610 | 0.801533 | 8.609839e-49 | -8.615850e-47 |
| Msa0398610 | Msa0405520 | 0.806187 | 9.293323e-50 | -8.615850e-47 |
| Msa0398610 | Msa0449900 | 0.928257 | 3.727628e-92 | -8.615850e-47 |
| Msa0398610 | Msa0449930 | 0.801195 | 1.009692e-48 | -8.615850e-47 |
| Msa0398610 | Msa0475830 | 0.843141 | 1.681872e-58 | -8.615850e-47 |
| Msa0398610 | Msa0582570 | 0.857633 | 1.428578e-62 | -8.615850e-47 |
| Msa0398610 | Msa0582580 | 0.871552 | 6.264172e-67 | -8.615850e-47 |
| Msa0398610 | Msa0591290 | 0.825380 | 4.838787e-54 | -8.615850e-47 |
| Msa0398610 | Msa0668630 | 0.929193 | 9.864216e-93 | -8.615850e-47 |
| Msa0398610 | Msa0727040 | 0.929531 | 6.081616e-93 | -8.615850e-47 |
| Msa0398610 | Msa0839730 | 0.802214 | 6.239685e-49 | -8.615850e-47 |
| Msa0398610 | Msa0876530 | 0.801096 | 1.057918e-48 | -8.615850e-47 |
| Msa0398610 | Msa0924820 | 0.914534 | 1.712355e-84 | -8.615850e-47 |
| Msa0398610 | Msa0924970 | 0.922833 | 5.878732e-89 | -8.615850e-47 |
| Msa0398610 | Msa0925020 | 0.873359 | 1.563035e-67 | -8.615850e-47 |
| Msa0398610 | Msa0930990 | 0.911985 | 3.266868e-83 | -8.615850e-47 |
| Msa0398610 | Msa0983670 | 0.844688 | 6.473292e-59 | -8.615850e-47 |
| Msa0398610 | Msa1086020 | 0.860307 | 2.263607e-63 | -8.615850e-47 |
| Msa0398610 | Msa1086330 | 0.881046 | 3.323354e-70 | -8.615850e-47 |
| Msa0398610 | Msa1086340 | 0.823508 | 1.333521e-53 | -8.615850e-47 |
| Msa0398610 | Msa1086410 | 0.820121 | 8.110188e-53 | -8.615850e-47 |
| Msa0398610 | Msa1086520 | 0.878263 | 3.234292e-69 | -8.615850e-47 |
| Msa0398610 | Msa1086630 | 0.859561 | 3.797482e-63 | -8.615850e-47 |
| Msa0398610 | Msa1086690 | 0.870581 | 1.310127e-66 | -8.615850e-47 |
| Msa0398610 | Msa1086830 | 0.862252 | 5.779767e-64 | -8.615850e-47 |
| Msa0398610 | Msa1087000 | 0.851299 | 9.712239e-61 | -8.615850e-47 |
| Msa0398610 | Msa1204110 | 0.826871 | 2.138567e-54 | -8.615850e-47 |
| Msa0398610 | Msa1211880 | 0.831747 | 1.400964e-55 | -8.615850e-47 |
| Msa0398610 | Msa1252040 | 0.802235 | 6.177991e-49 | -8.615850e-47 |
| Msa0398610 | Msa1332180 | 0.812236 | 4.692493e-51 | -8.615850e-47 |
| Msa0398610 | Msa1354850 | 0.859631 | 3.619404e-63 | -8.615850e-47 |
| Msa0398610 | Msa1355020 | 0.877769 | 4.816984e-69 | -8.615850e-47 |
| Msa0398610 | Msa1380540 | 0.858577 | 7.486374e-63 | -8.615850e-47 |
| Msa0398610 | Msa1394090 | 0.874899 | 4.706415e-68 | -8.615850e-47 |
| Msa0398610 | Msa1394100 | 0.864985 | 8.198752e-65 | -8.615850e-47 |
| Msa0398610 | Msa1394280 | 0.865412 | 6.018399e-65 | -8.615850e-47 |
| Msa0398610 | Msa1405190 | 0.818205 | 2.213405e-52 | -8.615850e-47 |
| Msa0398610 | Msa1433650 | 0.811040 | 8.540598e-51 | -8.615850e-47 |
| Msa0268220 | Msa0398610 | 0.868571 | 5.914146e-66 | -8.615850e-47 |
| Msa0268340 | Msa0398610 | 0.839921 | 1.186396e-57 | -8.615850e-47 |
| Msa0268460 | Msa0398610 | 0.882847 | 7.389642e-71 | -8.615850e-47 |
| Msa0268500 | Msa0398610 | 0.852038 | 6.000494e-61 | -8.615850e-47 |
| Msa0268680 | Msa0398610 | 0.835033 | 2.123416e-56 | -8.615850e-47 |
| Msa0268900 | Msa0398610 | 0.833869 | 4.162964e-56 | -8.615850e-47 |
| Msa0269100 | Msa0398610 | 0.874338 | 7.302146e-68 | -8.615850e-47 |
| Msa0344240 | Msa0398610 | 0.818612 | 1.789873e-52 | -8.615850e-47 |
| Msa0344250 | Msa0398610 | 0.862655 | 4.345459e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398610 | MtrunA17_CPg0492781 | 98.333 | 60 | 1 | 0 | 46 | 105 | 7 | 66 | 1.19e-38 | 124 |
| Msa0398610 | MtrunA17_Chr4g0015791 | 98.333 | 60 | 1 | 0 | 46 | 105 | 7 | 66 | 1.19e-38 | 124 |
| Msa0398610 | MtrunA17_Chr8g0355601 | 96.610 | 59 | 2 | 0 | 46 | 104 | 7 | 65 | 1.85e-37 | 120 |
| Msa0398610 | MtrunA17_Chr7g0224991 | 95.455 | 44 | 2 | 0 | 62 | 105 | 6 | 49 | 8.03e-26 | 90.9 |
| Msa0398610 | MtrunA17_CPg0492791 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0398610 | MtrunA17_Chr4g0015781 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0398610 | MtrunA17_Chr4g0028951 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0398610 | MtrunA17_Chr8g0355611 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.16e-15 | 64.3 |
| Msa0398610 | MtrunA17_Chr4g0016881 | 96.774 | 31 | 1 | 0 | 15 | 45 | 1 | 31 | 6.36e-15 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398610 | ATCG00640.1 | 75.000 | 60 | 15 | 0 | 46 | 105 | 7 | 66 | 2.54e-29 | 100 |
| Msa0398610 | ATCG00630.1 | 84.375 | 32 | 5 | 0 | 15 | 46 | 1 | 32 | 9.35e-13 | 58.2 |
Find 13 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACGAATAACTGTTATTT+TGG | 0.125276 | 3_2:+20507728 | Msa0398610:CDS |
| AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | 3_2:+20507772 | Msa0398610:CDS |
| AATCGTATGTTTGCAACAAA+AGG | 0.396841 | 3_2:-20507868 | None:intergenic |
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 3_2:+20507104 | Msa0398610:CDS |
| GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | 3_2:+20507773 | Msa0398610:CDS |
| CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | 3_2:+20507121 | Msa0398610:CDS |
| ACACAATACACCTAGTCGAT+TGG | 0.524208 | 3_2:+20507827 | Msa0398610:CDS |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 3_2:+20507111 | Msa0398610:CDS |
| ATCGTATGTTTGCAACAAAA+GGG | 0.538893 | 3_2:-20507867 | None:intergenic |
| TTTCTCAATTCCAATCGACT+AGG | 0.574270 | 3_2:-20507837 | None:intergenic |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 3_2:+20507090 | Msa0398610:CDS |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 3_2:-20507106 | None:intergenic |
| AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | 3_2:+20507774 | Msa0398610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAGAATCAAAAAAA+GGG | - | chr3_2:20507193-20507212 | None:intergenic | 10.0% |
| !! | AATAATTAGAATCAAAAAAA+GGG | - | chr3_2:20507193-20507212 | None:intergenic | 10.0% |
| !! | ATAATTAGAATCAAAAAAAG+GGG | - | chr3_2:20507192-20507211 | None:intergenic | 15.0% |
| !! | CAATAATTAGAATCAAAAAA+AGG | - | chr3_2:20507194-20507213 | None:intergenic | 15.0% |
| !!! | CTTTTTTTGATTCTAATTAT+TGG | + | chr3_2:20507192-20507211 | Msa0398610:intron | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | + | chr3_2:20507314-20507333 | Msa0398610:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | - | chr3_2:20507408-20507427 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | + | chr3_2:20507564-20507583 | Msa0398610:intron | 15.0% |
| !! | ATAATTAGAATCAAAAAAAG+GGG | - | chr3_2:20507192-20507211 | None:intergenic | 15.0% |
| !! | CAATAATTAGAATCAAAAAA+AGG | - | chr3_2:20507194-20507213 | None:intergenic | 15.0% |
| !!! | CTTTTTTTGATTCTAATTAT+TGG | + | chr3_2:20507192-20507211 | Msa0398610:intron | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | + | chr3_2:20507314-20507333 | Msa0398610:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | - | chr3_2:20507408-20507427 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | + | chr3_2:20507564-20507583 | Msa0398610:intron | 15.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | + | chr3_2:20507040-20507059 | Msa0398610:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | - | chr3_2:20507247-20507266 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | + | chr3_2:20507317-20507336 | Msa0398610:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | + | chr3_2:20507323-20507342 | Msa0398610:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | - | chr3_2:20507439-20507458 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | + | chr3_2:20507728-20507747 | Msa0398610:CDS | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | + | chr3_2:20507764-20507783 | Msa0398610:CDS | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | + | chr3_2:20507040-20507059 | Msa0398610:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | - | chr3_2:20507247-20507266 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | + | chr3_2:20507317-20507336 | Msa0398610:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | + | chr3_2:20507323-20507342 | Msa0398610:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | - | chr3_2:20507439-20507458 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | + | chr3_2:20507728-20507747 | Msa0398610:CDS | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | + | chr3_2:20507764-20507783 | Msa0398610:CDS | 20.0% |
| ! | TTTGATTCTAATTATTGGCA+CGG | + | chr3_2:20507197-20507216 | Msa0398610:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | - | chr3_2:20507264-20507283 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | + | chr3_2:20507443-20507462 | Msa0398610:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | + | chr3_2:20507444-20507463 | Msa0398610:intron | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | + | chr3_2:20507682-20507701 | Msa0398610:intron | 25.0% |
| ! | TTTGATTCTAATTATTGGCA+CGG | + | chr3_2:20507197-20507216 | Msa0398610:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | - | chr3_2:20507264-20507283 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | + | chr3_2:20507443-20507462 | Msa0398610:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | + | chr3_2:20507444-20507463 | Msa0398610:intron | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | + | chr3_2:20507682-20507701 | Msa0398610:intron | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | + | chr3_2:20507043-20507062 | Msa0398610:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | + | chr3_2:20507081-20507100 | Msa0398610:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | + | chr3_2:20507153-20507172 | Msa0398610:intron | 30.0% | |
| GAAAAAAAAAACGAACGAAG+AGG | - | chr3_2:20507265-20507284 | None:intergenic | 30.0% | |
| AAAAACTCCTAATTTCACTG+AGG | - | chr3_2:20507349-20507368 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | + | chr3_2:20507423-20507442 | Msa0398610:intron | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | + | chr3_2:20507447-20507466 | Msa0398610:intron | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | + | chr3_2:20507685-20507704 | Msa0398610:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | - | chr3_2:20507718-20507737 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | + | chr3_2:20507772-20507791 | Msa0398610:CDS | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | + | chr3_2:20507773-20507792 | Msa0398610:CDS | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | + | chr3_2:20507774-20507793 | Msa0398610:CDS | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | - | chr3_2:20507870-20507889 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | - | chr3_2:20507871-20507890 | None:intergenic | 30.0% | |
| TTACAAGAAAAAAACGAAGG+AGG | + | chr3_2:20507043-20507062 | Msa0398610:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | + | chr3_2:20507081-20507100 | Msa0398610:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | + | chr3_2:20507153-20507172 | Msa0398610:intron | 30.0% | |
| GAAAAAAAAAACGAACGAAG+AGG | - | chr3_2:20507265-20507284 | None:intergenic | 30.0% | |
| AAAAACTCCTAATTTCACTG+AGG | - | chr3_2:20507349-20507368 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | + | chr3_2:20507423-20507442 | Msa0398610:intron | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | + | chr3_2:20507447-20507466 | Msa0398610:intron | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | + | chr3_2:20507685-20507704 | Msa0398610:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | - | chr3_2:20507718-20507737 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | + | chr3_2:20507772-20507791 | Msa0398610:CDS | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | + | chr3_2:20507773-20507792 | Msa0398610:CDS | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | + | chr3_2:20507774-20507793 | Msa0398610:CDS | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | - | chr3_2:20507870-20507889 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | - | chr3_2:20507871-20507890 | None:intergenic | 30.0% | |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | + | chr3_2:20507352-20507371 | Msa0398610:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | - | chr3_2:20507372-20507391 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | - | chr3_2:20507373-20507392 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | + | chr3_2:20507448-20507467 | Msa0398610:intron | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | - | chr3_2:20507643-20507662 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | + | chr3_2:20507692-20507711 | Msa0398610:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | - | chr3_2:20507840-20507859 | None:intergenic | 35.0% | |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | + | chr3_2:20507352-20507371 | Msa0398610:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | - | chr3_2:20507372-20507391 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | - | chr3_2:20507373-20507392 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | + | chr3_2:20507448-20507467 | Msa0398610:intron | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | - | chr3_2:20507643-20507662 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | + | chr3_2:20507692-20507711 | Msa0398610:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | - | chr3_2:20507840-20507859 | None:intergenic | 35.0% | |
| TTCTAATTATTGGCACGGCA+AGG | + | chr3_2:20507202-20507221 | Msa0398610:intron | 40.0% | |
| TCTAATTATTGGCACGGCAA+GGG | + | chr3_2:20507203-20507222 | Msa0398610:intron | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | + | chr3_2:20507339-20507358 | Msa0398610:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | + | chr3_2:20507361-20507380 | Msa0398610:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | + | chr3_2:20507827-20507846 | Msa0398610:CDS | 40.0% | |
| TTCTAATTATTGGCACGGCA+AGG | + | chr3_2:20507202-20507221 | Msa0398610:intron | 40.0% | |
| TCTAATTATTGGCACGGCAA+GGG | + | chr3_2:20507203-20507222 | Msa0398610:intron | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | + | chr3_2:20507339-20507358 | Msa0398610:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | + | chr3_2:20507361-20507380 | Msa0398610:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | + | chr3_2:20507827-20507846 | Msa0398610:CDS | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | - | chr3_2:20507109-20507128 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | - | chr3_2:20507175-20507194 | None:intergenic | 45.0% | |
| CTAATTATTGGCACGGCAAG+GGG | + | chr3_2:20507204-20507223 | Msa0398610:intron | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | - | chr3_2:20507109-20507128 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | - | chr3_2:20507175-20507194 | None:intergenic | 45.0% | |
| CTAATTATTGGCACGGCAAG+GGG | + | chr3_2:20507204-20507223 | Msa0398610:intron | 45.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | + | chr3_2:20507090-20507109 | Msa0398610:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | + | chr3_2:20507104-20507123 | Msa0398610:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | + | chr3_2:20507111-20507130 | Msa0398610:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | - | chr3_2:20507174-20507193 | None:intergenic | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | + | chr3_2:20507699-20507718 | Msa0398610:intron | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | + | chr3_2:20507090-20507109 | Msa0398610:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | + | chr3_2:20507104-20507123 | Msa0398610:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | + | chr3_2:20507111-20507130 | Msa0398610:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | - | chr3_2:20507174-20507193 | None:intergenic | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | + | chr3_2:20507699-20507718 | Msa0398610:intron | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | + | chr3_2:20507121-20507140 | Msa0398610:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | - | chr3_2:20507701-20507720 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | + | chr3_2:20507698-20507717 | Msa0398610:intron | 55.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | + | chr3_2:20507121-20507140 | Msa0398610:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | - | chr3_2:20507701-20507720 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | + | chr3_2:20507698-20507717 | Msa0398610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 20507031 | 20507911 | 20507031 | ID=Msa0398610;Name=Msa0398610 |
| chr3_2 | mRNA | 20507031 | 20507911 | 20507031 | ID=Msa0398610-mRNA-1;Parent=Msa0398610;Name=Msa0398610-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|0|0|2|0|105 |
| chr3_2 | exon | 20507031 | 20507163 | 20507031 | ID=Msa0398610-mRNA-1:exon:4473;Parent=Msa0398610-mRNA-1 |
| chr3_2 | exon | 20507727 | 20507911 | 20507727 | ID=Msa0398610-mRNA-1:exon:4474;Parent=Msa0398610-mRNA-1 |
| chr3_2 | CDS | 20507031 | 20507163 | 20507031 | ID=Msa0398610-mRNA-1:cds;Parent=Msa0398610-mRNA-1 |
| chr3_2 | CDS | 20507727 | 20507911 | 20507727 | ID=Msa0398610-mRNA-1:cds;Parent=Msa0398610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
