Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449900 | YP_009141707.1 | 100.000 | 110 | 0 | 0 | 68 | 177 | 1 | 110 | 5.96e-69 | 215 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449900 | sp|P49169|RR18_PEA | 82.727 | 110 | 19 | 0 | 68 | 177 | 1 | 110 | 2.16e-54 | 171 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449900 | A0A4P8F1A6 | 100.000 | 110 | 0 | 0 | 68 | 177 | 1 | 110 | 2.85e-69 | 215 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0034800 | Msa0449900 | 0.824720 | 6.928630e-54 | -8.615850e-47 |
Msa0039200 | Msa0449900 | 0.824558 | 7.561702e-54 | -8.615850e-47 |
Msa0040190 | Msa0449900 | 0.842321 | 2.776504e-58 | -8.615850e-47 |
Msa0065190 | Msa0449900 | 0.801535 | 8.600607e-49 | -8.615850e-47 |
Msa0083200 | Msa0449900 | 0.803934 | 2.750631e-49 | -8.615850e-47 |
Msa0084550 | Msa0449900 | 0.809261 | 2.065102e-50 | -8.615850e-47 |
Msa0086820 | Msa0449900 | 0.828178 | 1.038479e-54 | -8.615850e-47 |
Msa0087880 | Msa0449900 | 0.866753 | 2.264781e-65 | -8.615850e-47 |
Msa0095140 | Msa0449900 | 0.888031 | 8.466473e-73 | -8.615850e-47 |
Msa0095240 | Msa0449900 | 0.912138 | 2.744838e-83 | -8.615850e-47 |
Msa0095270 | Msa0449900 | 0.889763 | 1.809442e-73 | -8.615850e-47 |
Msa0114960 | Msa0449900 | 0.809990 | 1.439991e-50 | -8.615850e-47 |
Msa0130620 | Msa0449900 | 0.809260 | 2.066389e-50 | -8.615850e-47 |
Msa0133670 | Msa0449900 | 0.826072 | 3.315802e-54 | -8.615850e-47 |
Msa0133880 | Msa0449900 | 0.829639 | 4.600598e-55 | -8.615850e-47 |
Msa0134550 | Msa0449900 | 0.848332 | 6.557236e-60 | -8.615850e-47 |
Msa0139740 | Msa0449900 | 0.813336 | 2.694846e-51 | -8.615850e-47 |
Msa0143210 | Msa0449900 | 0.815334 | 9.748982e-52 | -8.615850e-47 |
Msa0156780 | Msa0449900 | 0.843142 | 1.680256e-58 | -8.615850e-47 |
Msa0174800 | Msa0449900 | 0.810897 | 9.173989e-51 | -8.615850e-47 |
Msa0176530 | Msa0449900 | 0.808973 | 2.380194e-50 | -8.615850e-47 |
Msa0181290 | Msa0449900 | 0.800388 | 1.475666e-48 | -8.615850e-47 |
Msa0184120 | Msa0449900 | 0.827116 | 1.868970e-54 | -8.615850e-47 |
Msa0189050 | Msa0449900 | 0.833863 | 4.175360e-56 | -8.615850e-47 |
Msa0201910 | Msa0449900 | 0.806346 | 8.601001e-50 | -8.615850e-47 |
Msa0207530 | Msa0449900 | 0.802809 | 4.704511e-49 | -8.615850e-47 |
Msa0207900 | Msa0449900 | 0.804232 | 2.384937e-49 | -8.615850e-47 |
Msa0218480 | Msa0449900 | 0.809337 | 1.988975e-50 | -8.615850e-47 |
Msa0218590 | Msa0449900 | 0.810450 | 1.146074e-50 | -8.615850e-47 |
Msa0221860 | Msa0449900 | 0.924633 | 5.424614e-90 | -8.615850e-47 |
Msa0231310 | Msa0449900 | 0.840611 | 7.833753e-58 | -8.615850e-47 |
Msa0370510 | Msa0449900 | 0.800734 | 1.254064e-48 | -8.615850e-47 |
Msa0398610 | Msa0449900 | 0.928257 | 3.727628e-92 | -8.615850e-47 |
Msa0398620 | Msa0449900 | 0.845189 | 4.743762e-59 | -8.615850e-47 |
Msa0405520 | Msa0449900 | 0.805247 | 1.463552e-49 | -8.615850e-47 |
Msa0427050 | Msa0449900 | 0.809486 | 1.847606e-50 | -8.615850e-47 |
Msa0449900 | Msa0449930 | 0.850895 | 1.262853e-60 | -8.615850e-47 |
Msa0449900 | Msa0451370 | 0.822834 | 1.915895e-53 | -8.615850e-47 |
Msa0449900 | Msa0472870 | 0.822494 | 2.298896e-53 | -8.615850e-47 |
Msa0449900 | Msa0475830 | 0.878732 | 2.213058e-69 | -8.615850e-47 |
Msa0449900 | Msa0509510 | 0.808522 | 2.971472e-50 | -8.615850e-47 |
Msa0449900 | Msa0551520 | 0.806212 | 9.178762e-50 | -8.615850e-47 |
Msa0449900 | Msa0558220 | 0.800821 | 1.204008e-48 | -8.615850e-47 |
Msa0449900 | Msa0558890 | 0.802862 | 4.587143e-49 | -8.615850e-47 |
Msa0449900 | Msa0564000 | 0.818986 | 1.472011e-52 | -8.615850e-47 |
Msa0449900 | Msa0568490 | 0.820107 | 8.167813e-53 | -8.615850e-47 |
Msa0449900 | Msa0568810 | 0.807447 | 5.033452e-50 | -8.615850e-47 |
Msa0449900 | Msa0574230 | 0.803162 | 3.976895e-49 | -8.615850e-47 |
Msa0449900 | Msa0576510 | 0.800238 | 1.582769e-48 | -8.615850e-47 |
Msa0449900 | Msa0582570 | 0.903208 | 4.399983e-79 | -8.615850e-47 |
Msa0449900 | Msa0582580 | 0.907097 | 7.316292e-81 | -8.615850e-47 |
Msa0449900 | Msa0587060 | 0.822314 | 2.531461e-53 | -8.615850e-47 |
Msa0449900 | Msa0591290 | 0.815532 | 8.808315e-52 | -8.615850e-47 |
Msa0449900 | Msa0591370 | 0.832804 | 7.668834e-56 | -8.615850e-47 |
Msa0449900 | Msa0591380 | 0.802924 | 4.453620e-49 | -8.615850e-47 |
Msa0449900 | Msa0595240 | 0.806543 | 7.817699e-50 | -8.615850e-47 |
Msa0449900 | Msa0606680 | 0.826144 | 3.186972e-54 | -8.615850e-47 |
Msa0449900 | Msa0619480 | 0.814141 | 1.792342e-51 | -8.615850e-47 |
Msa0449900 | Msa0626890 | 0.800697 | 1.276085e-48 | -8.615850e-47 |
Msa0449900 | Msa0635990 | 0.830533 | 2.783261e-55 | -8.615850e-47 |
Msa0449900 | Msa0657820 | 0.820611 | 6.260639e-53 | -8.615850e-47 |
Msa0449900 | Msa0659640 | 0.818269 | 2.140855e-52 | -8.615850e-47 |
Msa0449900 | Msa0665010 | 0.807103 | 5.950870e-50 | -8.615850e-47 |
Msa0449900 | Msa0665040 | 0.802828 | 4.661758e-49 | -8.615850e-47 |
Msa0449900 | Msa0668630 | 0.962357 | 8.822064e-121 | -8.615850e-47 |
Msa0449900 | Msa0687320 | 0.819545 | 1.097661e-52 | -8.615850e-47 |
Msa0449900 | Msa0706710 | 0.802953 | 4.393325e-49 | -8.615850e-47 |
Msa0449900 | Msa0707870 | 0.809614 | 1.734405e-50 | -8.615850e-47 |
Msa0449900 | Msa0727020 | 0.809836 | 1.554097e-50 | -8.615850e-47 |
Msa0449900 | Msa0727040 | 0.928522 | 2.563601e-92 | -8.615850e-47 |
Msa0449900 | Msa0736330 | 0.821657 | 3.593745e-53 | -8.615850e-47 |
Msa0449900 | Msa0766880 | 0.843644 | 1.234355e-58 | -8.615850e-47 |
Msa0449900 | Msa0778060 | 0.825134 | 5.532613e-54 | -8.615850e-47 |
Msa0449900 | Msa0796460 | 0.800710 | 1.268167e-48 | -8.615850e-47 |
Msa0449900 | Msa0801390 | 0.808855 | 2.523053e-50 | -8.615850e-47 |
Msa0449900 | Msa0834160 | 0.801351 | 9.378875e-49 | -8.615850e-47 |
Msa0449900 | Msa0839730 | 0.834530 | 2.841156e-56 | -8.615850e-47 |
Msa0449900 | Msa0860270 | 0.800397 | 1.469464e-48 | -8.615850e-47 |
Msa0449900 | Msa0895860 | 0.801193 | 1.010704e-48 | -8.615850e-47 |
Msa0449900 | Msa0924820 | 0.955154 | 5.821586e-113 | -8.615850e-47 |
Msa0449900 | Msa0924890 | 0.802782 | 4.763449e-49 | -8.615850e-47 |
Msa0449900 | Msa0924970 | 0.972318 | 1.433647e-134 | -8.615850e-47 |
Msa0449900 | Msa0925020 | 0.915064 | 9.172197e-85 | -8.615850e-47 |
Msa0449900 | Msa0930990 | 0.956945 | 8.855345e-115 | -8.615850e-47 |
Msa0449900 | Msa0931280 | 0.806604 | 7.589065e-50 | -8.615850e-47 |
Msa0449900 | Msa0983670 | 0.884819 | 1.384645e-71 | -8.615850e-47 |
Msa0449900 | Msa1008960 | 0.813855 | 2.071489e-51 | -8.615850e-47 |
Msa0449900 | Msa1016130 | 0.840283 | 9.545301e-58 | -8.615850e-47 |
Msa0449900 | Msa1049440 | 0.809011 | 2.335731e-50 | -8.615850e-47 |
Msa0449900 | Msa1063180 | 0.817736 | 2.825489e-52 | -8.615850e-47 |
Msa0449900 | Msa1072770 | 0.803023 | 4.248000e-49 | -8.615850e-47 |
Msa0449900 | Msa1079610 | 0.831818 | 1.345511e-55 | -8.615850e-47 |
Msa0449900 | Msa1086020 | 0.909531 | 5.138787e-82 | -8.615850e-47 |
Msa0449900 | Msa1086160 | 0.846085 | 2.710805e-59 | -8.615850e-47 |
Msa0449900 | Msa1086260 | 0.825691 | 4.082514e-54 | -8.615850e-47 |
Msa0449900 | Msa1086330 | 0.911901 | 3.595483e-83 | -8.615850e-47 |
Msa0449900 | Msa1086340 | 0.882535 | 9.599818e-71 | -8.615850e-47 |
Msa0449900 | Msa1086410 | 0.872003 | 4.438888e-67 | -8.615850e-47 |
Msa0449900 | Msa1086440 | 0.823767 | 1.159767e-53 | -8.615850e-47 |
Msa0449900 | Msa1086520 | 0.920323 | 1.479514e-87 | -8.615850e-47 |
Msa0449900 | Msa1086630 | 0.902360 | 1.049316e-78 | -8.615850e-47 |
Msa0449900 | Msa1086690 | 0.911493 | 5.712312e-83 | -8.615850e-47 |
Msa0449900 | Msa1086830 | 0.911464 | 5.901561e-83 | -8.615850e-47 |
Msa0449900 | Msa1087000 | 0.893152 | 8.196685e-75 | -8.615850e-47 |
Msa0449900 | Msa1098570 | 0.811263 | 7.640115e-51 | -8.615850e-47 |
Msa0449900 | Msa1108530 | 0.815853 | 7.470834e-52 | -8.615850e-47 |
Msa0449900 | Msa1117830 | 0.802226 | 6.203954e-49 | -8.615850e-47 |
Msa0449900 | Msa1122480 | 0.819284 | 1.259081e-52 | -8.615850e-47 |
Msa0449900 | Msa1124440 | 0.831177 | 1.935089e-55 | -8.615850e-47 |
Msa0449900 | Msa1152280 | 0.817900 | 2.593666e-52 | -8.615850e-47 |
Msa0449900 | Msa1161120 | 0.808656 | 2.781659e-50 | -8.615850e-47 |
Msa0449900 | Msa1161160 | 0.802901 | 4.502372e-49 | -8.615850e-47 |
Msa0449900 | Msa1164650 | 0.804962 | 1.679434e-49 | -8.615850e-47 |
Msa0449900 | Msa1168130 | 0.802407 | 5.692807e-49 | -8.615850e-47 |
Msa0449900 | Msa1186010 | 0.803856 | 2.855559e-49 | -8.615850e-47 |
Msa0449900 | Msa1199690 | 0.813439 | 2.558506e-51 | -8.615850e-47 |
Msa0449900 | Msa1204110 | 0.855068 | 8.083126e-62 | -8.615850e-47 |
Msa0449900 | Msa1208070 | 0.807929 | 3.975806e-50 | -8.615850e-47 |
Msa0449900 | Msa1209650 | 0.807586 | 4.701556e-50 | -8.615850e-47 |
Msa0449900 | Msa1211100 | 0.803059 | 4.177128e-49 | -8.615850e-47 |
Msa0449900 | Msa1211880 | 0.846445 | 2.162560e-59 | -8.615850e-47 |
Msa0449900 | Msa1215660 | 0.831353 | 1.751938e-55 | -8.615850e-47 |
Msa0449900 | Msa1245300 | 0.807869 | 4.094258e-50 | -8.615850e-47 |
Msa0449900 | Msa1252040 | 0.842970 | 1.867882e-58 | -8.615850e-47 |
Msa0449900 | Msa1279240 | 0.817747 | 2.808299e-52 | -8.615850e-47 |
Msa0449900 | Msa1332180 | 0.831743 | 1.403713e-55 | -8.615850e-47 |
Msa0449900 | Msa1343540 | 0.805046 | 1.612644e-49 | -8.615850e-47 |
Msa0449900 | Msa1354850 | 0.897857 | 9.356094e-77 | -8.615850e-47 |
Msa0449900 | Msa1355020 | 0.913963 | 3.343367e-84 | -8.615850e-47 |
Msa0449900 | Msa1371250 | 0.803025 | 4.244173e-49 | -8.615850e-47 |
Msa0449900 | Msa1380540 | 0.889092 | 3.300065e-73 | -8.615850e-47 |
Msa0449900 | Msa1385940 | 0.823886 | 1.088099e-53 | -8.615850e-47 |
Msa0449900 | Msa1386190 | 0.804749 | 1.860174e-49 | -8.615850e-47 |
Msa0449900 | Msa1387090 | 0.801014 | 1.099534e-48 | -8.615850e-47 |
Msa0449900 | Msa1390410 | 0.835021 | 2.138454e-56 | -8.615850e-47 |
Msa0449900 | Msa1393600 | 0.824656 | 7.170187e-54 | -8.615850e-47 |
Msa0449900 | Msa1394090 | 0.913334 | 6.942816e-84 | -8.615850e-47 |
Msa0449900 | Msa1394100 | 0.916099 | 2.674224e-85 | -8.615850e-47 |
Msa0449900 | Msa1394280 | 0.904298 | 1.419713e-79 | -8.615850e-47 |
Msa0449900 | Msa1397550 | 0.802032 | 6.801801e-49 | -8.615850e-47 |
Msa0449900 | Msa1400600 | 0.821727 | 3.462977e-53 | -8.615850e-47 |
Msa0449900 | Msa1405190 | 0.849161 | 3.862058e-60 | -8.615850e-47 |
Msa0449900 | Msa1414560 | 0.800086 | 1.699348e-48 | -8.615850e-47 |
Msa0449900 | Msa1415120 | 0.853357 | 2.520405e-61 | -8.615850e-47 |
Msa0449900 | Msa1433650 | 0.830277 | 3.215129e-55 | -8.615850e-47 |
Msa0449900 | Msa1439160 | 0.824794 | 6.655474e-54 | -8.615850e-47 |
Msa0449900 | Msa1454940 | 0.824578 | 7.480307e-54 | -8.615850e-47 |
Msa0449900 | Msa1465410 | 0.808746 | 2.661684e-50 | -8.615850e-47 |
Msa0449900 | Msa1466170 | 0.816905 | 4.345732e-52 | -8.615850e-47 |
Msa0240290 | Msa0449900 | 0.812885 | 3.384943e-51 | -8.615850e-47 |
Msa0256170 | Msa0449900 | 0.823937 | 1.058481e-53 | -8.615850e-47 |
Msa0268180 | Msa0449900 | 0.801678 | 8.038027e-49 | -8.615850e-47 |
Msa0268220 | Msa0449900 | 0.902556 | 8.592931e-79 | -8.615850e-47 |
Msa0268340 | Msa0449900 | 0.886667 | 2.802672e-72 | -8.615850e-47 |
Msa0268460 | Msa0449900 | 0.919487 | 4.235322e-87 | -8.615850e-47 |
Msa0268500 | Msa0449900 | 0.899859 | 1.305615e-77 | -8.615850e-47 |
Msa0268650 | Msa0449900 | 0.808221 | 3.445069e-50 | -8.615850e-47 |
Msa0268680 | Msa0449900 | 0.880931 | 3.654937e-70 | -8.615850e-47 |
Msa0268690 | Msa0449900 | 0.839324 | 1.696533e-57 | -8.615850e-47 |
Msa0268760 | Msa0449900 | 0.807791 | 4.252939e-50 | -8.615850e-47 |
Msa0268900 | Msa0449900 | 0.882832 | 7.479561e-71 | -8.615850e-47 |
Msa0269060 | Msa0449900 | 0.801275 | 9.724547e-49 | -8.615850e-47 |
Msa0269100 | Msa0449900 | 0.909223 | 7.224709e-82 | -8.615850e-47 |
Msa0278080 | Msa0449900 | 0.806577 | 7.688257e-50 | -8.615850e-47 |
Msa0282880 | Msa0449900 | 0.811523 | 6.708527e-51 | -8.615850e-47 |
Msa0309160 | Msa0449900 | 0.832981 | 6.929548e-56 | -8.615850e-47 |
Msa0321180 | Msa0449900 | 0.812975 | 3.234739e-51 | -8.615850e-47 |
Msa0321200 | Msa0449900 | 0.816401 | 5.636011e-52 | -8.615850e-47 |
Msa0338900 | Msa0449900 | 0.821997 | 2.997730e-53 | -8.615850e-47 |
Msa0344240 | Msa0449900 | 0.862271 | 5.703780e-64 | -8.615850e-47 |
Msa0344250 | Msa0449900 | 0.901909 | 1.662853e-78 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449900 | MtrunA17_Chr4g0015801 | 81.301 | 123 | 10 | 3 | 68 | 177 | 1 | 123 | 5.46e-50 | 157 |
Msa0449900 | MtrunA17_CPg0492771 | 81.301 | 123 | 10 | 3 | 68 | 177 | 1 | 123 | 5.46e-50 | 157 |
Msa0449900 | MtrunA17_Chr6g0466591 | 88.889 | 90 | 6 | 1 | 68 | 153 | 1 | 90 | 1.93e-48 | 153 |
Msa0449900 | MtrunA17_Chr4g0016891 | 86.957 | 92 | 8 | 2 | 68 | 155 | 1 | 92 | 4.34e-45 | 144 |
Msa0449900 | MtrunA17_Chr7g0237831 | 94.667 | 75 | 2 | 1 | 68 | 140 | 1 | 75 | 5.73e-41 | 132 |
Msa0449900 | MtrunA17_Chr6g0465781 | 96.610 | 59 | 2 | 0 | 68 | 126 | 1 | 59 | 1.39e-33 | 113 |
Msa0449900 | MtrunA17_CPg0492791 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
Msa0449900 | MtrunA17_Chr4g0015781 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
Msa0449900 | MtrunA17_Chr4g0028951 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
Msa0449900 | MtrunA17_Chr8g0355611 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
Msa0449900 | MtrunA17_Chr4g0016881 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 6.32e-14 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449900 | ATCG00650.1 | 70.909 | 110 | 23 | 2 | 68 | 177 | 1 | 101 | 7.17e-44 | 141 |
Msa0449900 | ATCG00630.1 | 90.000 | 30 | 3 | 0 | 15 | 44 | 1 | 30 | 1.55e-11 | 57.0 |
Find 16 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | 3_3:-34881706 | Msa0449900:CDS |
CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 3_3:-34882390 | Msa0449900:CDS |
GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | 3_3:-34881705 | Msa0449900:CDS |
AGTTTGTCCCCGATCCAATC+GGG | 0.455483 | 3_3:-34881297 | Msa0449900:CDS |
GAGTTTGTCCCCGATCCAAT+CGG | 0.465376 | 3_3:-34881298 | Msa0449900:CDS |
CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | 3_3:-34882373 | Msa0449900:CDS |
AAAGGTGACGAATTAACAAA+AGG | 0.521079 | 3_3:+34881123 | None:intergenic |
GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 3_3:-34882383 | Msa0449900:CDS |
ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 3_3:-34882404 | Msa0449900:CDS |
GAGTCGCTTAGATTTATCCA+TGG | 0.585856 | 3_3:+34881350 | None:intergenic |
AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 3_3:+34882388 | None:intergenic |
GTATAGGAATAAACAAACCA+TGG | 0.629025 | 3_3:-34881367 | Msa0449900:CDS |
TATCGACTTATTAGTCAACA+AGG | 0.637963 | 3_3:-34881240 | Msa0449900:CDS |
GTTTGTCCCCGATCCAATCG+GGG | 0.647747 | 3_3:-34881296 | Msa0449900:CDS |
TTTGTCCCCGATCCAATCGG+GGG | 0.661952 | 3_3:-34881295 | Msa0449900:CDS |
AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | 3_3:-34881704 | Msa0449900:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTAATATAAAATTAAT+TGG | - | chr3_3:34881587-34881606 | Msa0449900:intron | 0.0% |
!! | AAAATTAATATAAAATTAAT+TGG | - | chr3_3:34881587-34881606 | Msa0449900:intron | 0.0% |
!!! | TTTTTTTCATTATTAACAAA+AGG | + | chr3_3:34882399-34882418 | None:intergenic | 10.0% |
!!! | TTTTTTTCATTATTAACAAA+AGG | + | chr3_3:34882399-34882418 | None:intergenic | 10.0% |
!! | AATAACTAGAATCAAAAAAA+GGG | + | chr3_3:34881200-34881219 | None:intergenic | 15.0% |
!! | AGAGCAAATTAATTTAATAA+AGG | - | chr3_3:34881326-34881345 | Msa0449900:CDS | 15.0% |
!! | TATTATTAAATTCATAGCAA+TGG | + | chr3_3:34881420-34881439 | None:intergenic | 15.0% |
!!! | AATCCTTTTTTTATAAGAAA+TGG | - | chr3_3:34882103-34882122 | Msa0449900:intron | 15.0% |
!!! | ATCCTTTTTTTATAAGAAAT+GGG | - | chr3_3:34882104-34882123 | Msa0449900:intron | 15.0% |
!! | AATAACTAGAATCAAAAAAA+GGG | + | chr3_3:34881200-34881219 | None:intergenic | 15.0% |
!! | AGAGCAAATTAATTTAATAA+AGG | - | chr3_3:34881326-34881345 | Msa0449900:CDS | 15.0% |
!! | TATTATTAAATTCATAGCAA+TGG | + | chr3_3:34881420-34881439 | None:intergenic | 15.0% |
!!! | AATCCTTTTTTTATAAGAAA+TGG | - | chr3_3:34882103-34882122 | Msa0449900:intron | 15.0% |
!!! | ATCCTTTTTTTATAAGAAAT+GGG | - | chr3_3:34882104-34882123 | Msa0449900:intron | 15.0% |
!! | AAATTACAAGAAAAAAACGA+AGG | - | chr3_3:34881047-34881066 | Msa0449900:CDS | 20.0% |
!! | ATAACTAGAATCAAAAAAAG+GGG | + | chr3_3:34881199-34881218 | None:intergenic | 20.0% |
!! | CAATAACTAGAATCAAAAAA+AGG | + | chr3_3:34881201-34881220 | None:intergenic | 20.0% |
!!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr3_3:34881199-34881218 | Msa0449900:CDS | 20.0% |
!!! | AGAGGGATTTAATATTTTAT+TGG | + | chr3_3:34881254-34881273 | None:intergenic | 20.0% |
!! | GCAAATTAATTTAATAAAGG+TGG | - | chr3_3:34881329-34881348 | Msa0449900:CDS | 20.0% |
!!! | TAATTTAATAAAGGTGGATT+TGG | - | chr3_3:34881335-34881354 | Msa0449900:CDS | 20.0% |
!! | TTCTATTACAATTCCATTTA+TGG | + | chr3_3:34881451-34881470 | None:intergenic | 20.0% |
!!! | TATACGAATAACTGTTATTT+TGG | - | chr3_3:34881751-34881770 | Msa0449900:intron | 20.0% |
!!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr3_3:34881787-34881806 | Msa0449900:intron | 20.0% |
!! | AGATAAAGAAATAGAGAAAA+TGG | - | chr3_3:34881921-34881940 | Msa0449900:intron | 20.0% |
!! | ATCCCATTTCTTATAAAAAA+AGG | + | chr3_3:34882109-34882128 | None:intergenic | 20.0% |
!!! | TTTATAAGAAATGGGATTTT+CGG | - | chr3_3:34882112-34882131 | Msa0449900:intron | 20.0% |
!!! | AATTAATCGTTGTTGTTTTA+AGG | + | chr3_3:34882319-34882338 | None:intergenic | 20.0% |
!!! | TTTTTTTTTAGAACAGTAGT+AGG | + | chr3_3:34882456-34882475 | None:intergenic | 20.0% |
!! | AAATTACAAGAAAAAAACGA+AGG | - | chr3_3:34881047-34881066 | Msa0449900:CDS | 20.0% |
!! | ATAACTAGAATCAAAAAAAG+GGG | + | chr3_3:34881199-34881218 | None:intergenic | 20.0% |
!! | CAATAACTAGAATCAAAAAA+AGG | + | chr3_3:34881201-34881220 | None:intergenic | 20.0% |
!!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr3_3:34881199-34881218 | Msa0449900:CDS | 20.0% |
!!! | AGAGGGATTTAATATTTTAT+TGG | + | chr3_3:34881254-34881273 | None:intergenic | 20.0% |
!! | GCAAATTAATTTAATAAAGG+TGG | - | chr3_3:34881329-34881348 | Msa0449900:CDS | 20.0% |
!!! | TAATTTAATAAAGGTGGATT+TGG | - | chr3_3:34881335-34881354 | Msa0449900:CDS | 20.0% |
!! | TTCTATTACAATTCCATTTA+TGG | + | chr3_3:34881451-34881470 | None:intergenic | 20.0% |
!!! | TATACGAATAACTGTTATTT+TGG | - | chr3_3:34881751-34881770 | Msa0449900:intron | 20.0% |
!!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr3_3:34881787-34881806 | Msa0449900:intron | 20.0% |
!! | AGATAAAGAAATAGAGAAAA+TGG | - | chr3_3:34881921-34881940 | Msa0449900:intron | 20.0% |
!! | ATCCCATTTCTTATAAAAAA+AGG | + | chr3_3:34882109-34882128 | None:intergenic | 20.0% |
!!! | TTTATAAGAAATGGGATTTT+CGG | - | chr3_3:34882112-34882131 | Msa0449900:intron | 20.0% |
!!! | AATTAATCGTTGTTGTTTTA+AGG | + | chr3_3:34882319-34882338 | None:intergenic | 20.0% |
!!! | TTTTTTTTTAGAACAGTAGT+AGG | + | chr3_3:34882456-34882475 | None:intergenic | 20.0% |
! | AAAAAAAAAACGAACGAAGA+GGG | + | chr3_3:34881271-34881290 | None:intergenic | 25.0% |
! | AAAAAAAAAAACGAACGAAG+AGG | + | chr3_3:34881272-34881291 | None:intergenic | 25.0% |
! | TGGAATTGTAATAGAATACT+TGG | - | chr3_3:34881455-34881474 | Msa0449900:intron | 25.0% |
! | GGAATTGTAATAGAATACTT+GGG | - | chr3_3:34881456-34881475 | Msa0449900:intron | 25.0% |
! | AGTGAATCAAAAAAAACCAA+AGG | - | chr3_3:34881705-34881724 | Msa0449900:CDS | 25.0% |
! | TTATAGAATTTACCTCCTAA+GGG | + | chr3_3:34881962-34881981 | None:intergenic | 25.0% |
! | TTTATAGAATTTACCTCCTA+AGG | + | chr3_3:34881963-34881982 | None:intergenic | 25.0% |
! | AAAAAAAAAACGAACGAAGA+GGG | + | chr3_3:34881271-34881290 | None:intergenic | 25.0% |
! | AAAAAAAAAAACGAACGAAG+AGG | + | chr3_3:34881272-34881291 | None:intergenic | 25.0% |
! | TGGAATTGTAATAGAATACT+TGG | - | chr3_3:34881455-34881474 | Msa0449900:intron | 25.0% |
! | GGAATTGTAATAGAATACTT+GGG | - | chr3_3:34881456-34881475 | Msa0449900:intron | 25.0% |
! | AGTGAATCAAAAAAAACCAA+AGG | - | chr3_3:34881705-34881724 | Msa0449900:CDS | 25.0% |
! | TTATAGAATTTACCTCCTAA+GGG | + | chr3_3:34881962-34881981 | None:intergenic | 25.0% |
! | TTTATAGAATTTACCTCCTA+AGG | + | chr3_3:34881963-34881982 | None:intergenic | 25.0% |
TTACAAGAAAAAAACGAAGG+AGG | - | chr3_3:34881050-34881069 | Msa0449900:CDS | 30.0% | |
TCTAAAAACATATCTCTCTG+TGG | - | chr3_3:34881088-34881107 | Msa0449900:CDS | 30.0% | |
AGAAATCAATCGTTTATTCC+CGG | - | chr3_3:34881160-34881179 | Msa0449900:CDS | 30.0% | |
! | TTTGATTCTAGTTATTGGCA+CGG | - | chr3_3:34881204-34881223 | Msa0449900:CDS | 30.0% |
AAAAACTCCTAATTTCACTG+AGG | + | chr3_3:34881361-34881380 | None:intergenic | 30.0% | |
TAATAGAGTGAGACCATAAA+TGG | - | chr3_3:34881435-34881454 | Msa0449900:intron | 30.0% | |
GAATCAAAAAAAACCAAAGG+AGG | - | chr3_3:34881708-34881727 | Msa0449900:CDS | 30.0% | |
TATTCGTATATCTTTACCCT+TGG | + | chr3_3:34881741-34881760 | None:intergenic | 30.0% | |
! | AGAGTGTTAATAAGGAATCT+AGG | - | chr3_3:34881795-34881814 | Msa0449900:intron | 30.0% |
GAGTGTTAATAAGGAATCTA+GGG | - | chr3_3:34881796-34881815 | Msa0449900:intron | 30.0% | |
AGTGTTAATAAGGAATCTAG+GGG | - | chr3_3:34881797-34881816 | Msa0449900:intron | 30.0% | |
ATCGTATGTTTGCAACAAAA+GGG | + | chr3_3:34881893-34881912 | None:intergenic | 30.0% | |
AATCGTATGTTTGCAACAAA+AGG | + | chr3_3:34881894-34881913 | None:intergenic | 30.0% | |
GTATAGGAATAAACAAACCA+TGG | - | chr3_3:34882134-34882153 | Msa0449900:intron | 30.0% | |
! | AATCTAAGCAATCTTTTCGT+AGG | - | chr3_3:34882181-34882200 | Msa0449900:intron | 30.0% |
!! | TATCGACTTATTAGTCAACA+AGG | - | chr3_3:34882261-34882280 | Msa0449900:intron | 30.0% |
AAAGGTGACGAATTAACAAA+AGG | + | chr3_3:34882381-34882400 | None:intergenic | 30.0% | |
TTACAAGAAAAAAACGAAGG+AGG | - | chr3_3:34881050-34881069 | Msa0449900:CDS | 30.0% | |
TCTAAAAACATATCTCTCTG+TGG | - | chr3_3:34881088-34881107 | Msa0449900:CDS | 30.0% | |
AGAAATCAATCGTTTATTCC+CGG | - | chr3_3:34881160-34881179 | Msa0449900:CDS | 30.0% | |
! | TTTGATTCTAGTTATTGGCA+CGG | - | chr3_3:34881204-34881223 | Msa0449900:CDS | 30.0% |
AAAAACTCCTAATTTCACTG+AGG | + | chr3_3:34881361-34881380 | None:intergenic | 30.0% | |
TAATAGAGTGAGACCATAAA+TGG | - | chr3_3:34881435-34881454 | Msa0449900:intron | 30.0% | |
GAATCAAAAAAAACCAAAGG+AGG | - | chr3_3:34881708-34881727 | Msa0449900:CDS | 30.0% | |
TATTCGTATATCTTTACCCT+TGG | + | chr3_3:34881741-34881760 | None:intergenic | 30.0% | |
! | AGAGTGTTAATAAGGAATCT+AGG | - | chr3_3:34881795-34881814 | Msa0449900:intron | 30.0% |
GAGTGTTAATAAGGAATCTA+GGG | - | chr3_3:34881796-34881815 | Msa0449900:intron | 30.0% | |
AGTGTTAATAAGGAATCTAG+GGG | - | chr3_3:34881797-34881816 | Msa0449900:intron | 30.0% | |
ATCGTATGTTTGCAACAAAA+GGG | + | chr3_3:34881893-34881912 | None:intergenic | 30.0% | |
AATCGTATGTTTGCAACAAA+AGG | + | chr3_3:34881894-34881913 | None:intergenic | 30.0% | |
GTATAGGAATAAACAAACCA+TGG | - | chr3_3:34882134-34882153 | Msa0449900:intron | 30.0% | |
! | AATCTAAGCAATCTTTTCGT+AGG | - | chr3_3:34882181-34882200 | Msa0449900:intron | 30.0% |
!! | TATCGACTTATTAGTCAACA+AGG | - | chr3_3:34882261-34882280 | Msa0449900:intron | 30.0% |
AAAGGTGACGAATTAACAAA+AGG | + | chr3_3:34882381-34882400 | None:intergenic | 30.0% | |
! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr3_3:34881364-34881383 | Msa0449900:CDS | 35.0% |
CTTCAATTCCATTGAAACCT+GGG | + | chr3_3:34881384-34881403 | None:intergenic | 35.0% | |
ACTTCAATTCCATTGAAACC+TGG | + | chr3_3:34881385-34881404 | None:intergenic | 35.0% | |
TTCGAAGCGAAGAAGAAAAA+AGG | + | chr3_3:34881666-34881685 | None:intergenic | 35.0% | |
AAAAAACCAAAGGAGGTTCA+TGG | - | chr3_3:34881715-34881734 | Msa0449900:CDS | 35.0% | |
TTTCTCAATTCCAATCGACT+AGG | + | chr3_3:34881863-34881882 | None:intergenic | 35.0% | |
! | AGAAATGGGATTTTCGGTAT+AGG | - | chr3_3:34882118-34882137 | Msa0449900:intron | 35.0% |
! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr3_3:34881364-34881383 | Msa0449900:CDS | 35.0% |
CTTCAATTCCATTGAAACCT+GGG | + | chr3_3:34881384-34881403 | None:intergenic | 35.0% | |
ACTTCAATTCCATTGAAACC+TGG | + | chr3_3:34881385-34881404 | None:intergenic | 35.0% | |
TTCGAAGCGAAGAAGAAAAA+AGG | + | chr3_3:34881666-34881685 | None:intergenic | 35.0% | |
AAAAAACCAAAGGAGGTTCA+TGG | - | chr3_3:34881715-34881734 | Msa0449900:CDS | 35.0% | |
TTTCTCAATTCCAATCGACT+AGG | + | chr3_3:34881863-34881882 | None:intergenic | 35.0% | |
! | AGAAATGGGATTTTCGGTAT+AGG | - | chr3_3:34882118-34882137 | Msa0449900:intron | 35.0% |
GATTTGGCCTCAGTGAAATT+AGG | - | chr3_3:34881351-34881370 | Msa0449900:CDS | 40.0% | |
! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr3_3:34881373-34881392 | Msa0449900:CDS | 40.0% |
ACACAATACACCTAGTCGAT+TGG | - | chr3_3:34881850-34881869 | Msa0449900:intron | 40.0% | |
ATTGTTTGTGTGTCACCCTT+AGG | - | chr3_3:34881944-34881963 | Msa0449900:intron | 40.0% | |
GAGTCGCTTAGATTTATCCA+TGG | + | chr3_3:34882154-34882173 | None:intergenic | 40.0% | |
GATTTGGCCTCAGTGAAATT+AGG | - | chr3_3:34881351-34881370 | Msa0449900:CDS | 40.0% | |
! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr3_3:34881373-34881392 | Msa0449900:CDS | 40.0% |
ACACAATACACCTAGTCGAT+TGG | - | chr3_3:34881850-34881869 | Msa0449900:intron | 40.0% | |
ATTGTTTGTGTGTCACCCTT+AGG | - | chr3_3:34881944-34881963 | Msa0449900:intron | 40.0% | |
GAGTCGCTTAGATTTATCCA+TGG | + | chr3_3:34882154-34882173 | None:intergenic | 40.0% | |
! | AACCATAGAGTACTTGCCAC+TGG | + | chr3_3:34881116-34881135 | None:intergenic | 45.0% |
AAGGGGAATGTCAATGCATC+CGG | + | chr3_3:34881182-34881201 | None:intergenic | 45.0% | |
! | TTCTAGTTATTGGCACGGCA+AGG | - | chr3_3:34881209-34881228 | Msa0449900:CDS | 45.0% |
TCTAGTTATTGGCACGGCAA+GGG | - | chr3_3:34881210-34881229 | Msa0449900:CDS | 45.0% | |
AATCAATTCGATCCCCCGAT+TGG | + | chr3_3:34882221-34882240 | None:intergenic | 45.0% | |
! | AACCATAGAGTACTTGCCAC+TGG | + | chr3_3:34881116-34881135 | None:intergenic | 45.0% |
AAGGGGAATGTCAATGCATC+CGG | + | chr3_3:34881182-34881201 | None:intergenic | 45.0% | |
! | TTCTAGTTATTGGCACGGCA+AGG | - | chr3_3:34881209-34881228 | Msa0449900:CDS | 45.0% |
TCTAGTTATTGGCACGGCAA+GGG | - | chr3_3:34881210-34881229 | Msa0449900:CDS | 45.0% | |
AATCAATTCGATCCCCCGAT+TGG | + | chr3_3:34882221-34882240 | None:intergenic | 45.0% | |
!!! | TTATTTATATTTGTTATATA+AGG | + | chr3_3:34882035-34882054 | None:intergenic | 5.0% |
!!! | TTATTTATATTTGTTATATA+AGG | + | chr3_3:34882035-34882054 | None:intergenic | 5.0% |
ATATCTCTCTGTGGCACCAG+TGG | - | chr3_3:34881097-34881116 | Msa0449900:CDS | 50.0% | |
CACCAGTGGCAAGTACTCTA+TGG | - | chr3_3:34881111-34881130 | Msa0449900:CDS | 50.0% | |
GGCAAGTACTCTATGGTTCG+CGG | - | chr3_3:34881118-34881137 | Msa0449900:CDS | 50.0% | |
AGGGGAATGTCAATGCATCC+GGG | + | chr3_3:34881181-34881200 | None:intergenic | 50.0% | |
CTAGTTATTGGCACGGCAAG+GGG | - | chr3_3:34881211-34881230 | Msa0449900:CDS | 50.0% | |
CAAAGGAGGTTCATGGCCAA+GGG | - | chr3_3:34881722-34881741 | Msa0449900:intron | 50.0% | |
GTTTGTGTGTCACCCTTAGG+AGG | - | chr3_3:34881947-34881966 | Msa0449900:intron | 50.0% | |
GAGTTTGTCCCCGATCCAAT+CGG | - | chr3_3:34882203-34882222 | Msa0449900:intron | 50.0% | |
AGTTTGTCCCCGATCCAATC+GGG | - | chr3_3:34882204-34882223 | Msa0449900:intron | 50.0% | |
ATTCGATCCCCCGATTGGAT+CGG | + | chr3_3:34882216-34882235 | None:intergenic | 50.0% | |
ATATCTCTCTGTGGCACCAG+TGG | - | chr3_3:34881097-34881116 | Msa0449900:CDS | 50.0% | |
CACCAGTGGCAAGTACTCTA+TGG | - | chr3_3:34881111-34881130 | Msa0449900:CDS | 50.0% | |
GGCAAGTACTCTATGGTTCG+CGG | - | chr3_3:34881118-34881137 | Msa0449900:CDS | 50.0% | |
AGGGGAATGTCAATGCATCC+GGG | + | chr3_3:34881181-34881200 | None:intergenic | 50.0% | |
CTAGTTATTGGCACGGCAAG+GGG | - | chr3_3:34881211-34881230 | Msa0449900:CDS | 50.0% | |
CAAAGGAGGTTCATGGCCAA+GGG | - | chr3_3:34881722-34881741 | Msa0449900:intron | 50.0% | |
GTTTGTGTGTCACCCTTAGG+AGG | - | chr3_3:34881947-34881966 | Msa0449900:intron | 50.0% | |
GAGTTTGTCCCCGATCCAAT+CGG | - | chr3_3:34882203-34882222 | Msa0449900:intron | 50.0% | |
AGTTTGTCCCCGATCCAATC+GGG | - | chr3_3:34882204-34882223 | Msa0449900:intron | 50.0% | |
ATTCGATCCCCCGATTGGAT+CGG | + | chr3_3:34882216-34882235 | None:intergenic | 50.0% | |
! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr3_3:34881128-34881147 | Msa0449900:CDS | 55.0% |
CCTTGGCCATGAACCTCCTT+TGG | + | chr3_3:34881724-34881743 | None:intergenic | 55.0% | |
CCAAAGGAGGTTCATGGCCA+AGG | - | chr3_3:34881721-34881740 | Msa0449900:intron | 55.0% | |
GTTTGTCCCCGATCCAATCG+GGG | - | chr3_3:34882205-34882224 | Msa0449900:intron | 55.0% | |
TTTGTCCCCGATCCAATCGG+GGG | - | chr3_3:34882206-34882225 | Msa0449900:intron | 55.0% | |
TTCGATCCCCCGATTGGATC+GGG | + | chr3_3:34882215-34882234 | None:intergenic | 55.0% | |
! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr3_3:34881128-34881147 | Msa0449900:CDS | 55.0% |
CCTTGGCCATGAACCTCCTT+TGG | + | chr3_3:34881724-34881743 | None:intergenic | 55.0% | |
CCAAAGGAGGTTCATGGCCA+AGG | - | chr3_3:34881721-34881740 | Msa0449900:intron | 55.0% | |
GTTTGTCCCCGATCCAATCG+GGG | - | chr3_3:34882205-34882224 | Msa0449900:intron | 55.0% | |
TTTGTCCCCGATCCAATCGG+GGG | - | chr3_3:34882206-34882225 | Msa0449900:intron | 55.0% | |
TTCGATCCCCCGATTGGATC+GGG | + | chr3_3:34882215-34882234 | None:intergenic | 55.0% | |
TCGATCCCCCGATTGGATCG+GGG | + | chr3_3:34882214-34882233 | None:intergenic | 60.0% | |
TCGATCCCCCGATTGGATCG+GGG | + | chr3_3:34882214-34882233 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 34881038 | 34882485 | 34881038 | ID=Msa0449900;Name=Msa0449900 |
chr3_3 | mRNA | 34881038 | 34882485 | 34881038 | ID=Msa0449900-mRNA-1;Parent=Msa0449900;Name=Msa0449900-mRNA-1;_AED=0.31;_eAED=0.36;_QI=0|0|0|1|0|0|3|0|177 |
chr3_3 | exon | 34882353 | 34882485 | 34882353 | ID=Msa0449900-mRNA-1:exon:6212;Parent=Msa0449900-mRNA-1 |
chr3_3 | exon | 34881705 | 34881739 | 34881705 | ID=Msa0449900-mRNA-1:exon:6211;Parent=Msa0449900-mRNA-1 |
chr3_3 | exon | 34881038 | 34881403 | 34881038 | ID=Msa0449900-mRNA-1:exon:6210;Parent=Msa0449900-mRNA-1 |
chr3_3 | CDS | 34882353 | 34882485 | 34882353 | ID=Msa0449900-mRNA-1:cds;Parent=Msa0449900-mRNA-1 |
chr3_3 | CDS | 34881705 | 34881739 | 34881705 | ID=Msa0449900-mRNA-1:cds;Parent=Msa0449900-mRNA-1 |
chr3_3 | CDS | 34881038 | 34881403 | 34881038 | ID=Msa0449900-mRNA-1:cds;Parent=Msa0449900-mRNA-1 |
Gene Sequence |
Protein sequence |