AlfalfaGEDB | Msa0924820

M. sativa cultivar zhongmu-4 / Msa0924820

KEGG: K02108
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1902600
PFAM: PF01701.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924820	AET02655.1	89.691	97	3	1	15	104	1	97	2.91e-54	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924820	sp\|B5LMP5\|RK33_CICAR	96.667	60	2	0	46	105	7	66	2.77e-37	123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016830	Msa0924820	0.835862	1.310641e-56	-8.615850e-47
Msa0028450	Msa0924820	0.805503	1.293348e-49	-8.615850e-47
Msa0030710	Msa0924820	0.816240	6.125256e-52	-8.615850e-47
Msa0032040	Msa0924820	0.819823	9.486640e-53	-8.615850e-47
Msa0033650	Msa0924820	0.801623	8.251485e-49	-8.615850e-47
Msa0034800	Msa0924820	0.857153	1.981989e-62	-8.615850e-47
Msa0035090	Msa0924820	0.811481	6.852187e-51	-8.615850e-47
Msa0039200	Msa0924820	0.851596	8.006093e-61	-8.615850e-47
Msa0040190	Msa0924820	0.866756	2.259190e-65	-8.615850e-47
Msa0065190	Msa0924820	0.840782	7.066965e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924820	MtrunA17_CPg0492781	98.333	60	1	46	105	7	66	1.14e-38	124
Msa0924820	MtrunA17_Chr4g0015791	98.333	60	1	46	105	7	66	1.14e-38	124
Msa0924820	MtrunA17_Chr8g0355601	96.610	59	2	46	104	7	65	1.73e-37	120
Msa0924820	MtrunA17_Chr7g0224991	95.455	44	2	62	105	6	49	7.95e-26	90.9
Msa0924820	MtrunA17_CPg0492791	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa0924820	MtrunA17_Chr4g0015781	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa0924820	MtrunA17_Chr4g0028951	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa0924820	MtrunA17_Chr8g0355611	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa0924820	MtrunA17_Chr4g0016881	96.774	31	1	15	45	1	31	5.83e-15	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924820	ATCG00640.1	75.000	60	15	0	46	105	7	66	2.13e-29	100
Msa0924820	ATCG00630.1	84.375	32	5	0	15	46	1	32	8.57e-13	58.2

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Find 13 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATAGAGTACTTGCCAC+TGG	0.586013	6_2:+67447861	None:intergenic
AATCGTATGTTTGCAACAAA+AGG	0.396841	6_2:+67447092	None:intergenic
ACACAATACACCTAGTCGAT+TGG	0.524208	6_2:-67447133	Msa0924820:CDS
AGAGTGTTAATAAGGAATCT+AGG	0.329597	6_2:-67447188	Msa0924820:CDS
AGTGTTAATAAGGAATCTAG+GGG	0.667965	6_2:-67447186	Msa0924820:CDS
ATATCTCTCTGTGGCACCAG+TGG	0.585814	6_2:-67447877	Msa0924820:CDS
ATCGTATGTTTGCAACAAAA+GGG	0.538893	6_2:+67447093	None:intergenic
CACCAGTGGCAAGTACTCTA+TGG	0.426592	6_2:-67447863	Msa0924820:CDS
CTATGGTTCGCGGTTCTAGC+AGG	0.487956	6_2:-67447846	Msa0924820:CDS
GAGTGTTAATAAGGAATCTA+GGG	0.452009	6_2:-67447187	Msa0924820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACAAGAAAAAAACGAAGG+AGG	-	chr6_2:67447083-67447102	Msa0924820:CDS	30.0%
TCTAAAAACATATCTCTCTG+TGG	-	chr6_2:67447121-67447140	Msa0924820:CDS	30.0%
AGAAATCAATCGTTTATTCC+CGG	-	chr6_2:67447193-67447212	Msa0924820:CDS	30.0%
AAAAACTCCTAATTTCACTG+AGG	+	chr6_2:67447392-67447411	None:intergenic	30.0%
TAATAGAGTGAGACCATAAA+TGG	-	chr6_2:67447466-67447485	Msa0924820:intron	30.0%
ATTGTAATAGAATACTTGGG+CGG	-	chr6_2:67447490-67447509	Msa0924820:intron	30.0%
GAATCAAAAAAAACCAAAGG+AGG	-	chr6_2:67447732-67447751	Msa0924820:intron	30.0%
TATTCGTATATCTTTACCCT+TGG	+	chr6_2:67447765-67447784	None:intergenic	30.0%
GAGTGTTAATAAGGAATCTA+GGG	-	chr6_2:67447820-67447839	Msa0924820:intron	30.0%
AGTGTTAATAAGGAATCTAG+GGG	-	chr6_2:67447821-67447840	Msa0924820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	67447071	67447958	67447071	ID=Msa0924820;Name=Msa0924820
chr6_2	mRNA	67447071	67447958	67447071	ID=Msa0924820-mRNA-1;Parent=Msa0924820;Name=Msa0924820-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|0\|0\|2\|0\|105
chr6_2	exon	67447826	67447958	67447826	ID=Msa0924820-mRNA-1:exon:10680;Parent=Msa0924820-mRNA-1
chr6_2	exon	67447071	67447255	67447071	ID=Msa0924820-mRNA-1:exon:10679;Parent=Msa0924820-mRNA-1
chr6_2	CDS	67447826	67447958	67447826	ID=Msa0924820-mRNA-1:cds;Parent=Msa0924820-mRNA-1
chr6_2	CDS	67447071	67447255	67447071	ID=Msa0924820-mRNA-1:cds;Parent=Msa0924820-mRNA-1

Gene Sequence	>Msa0924820 ATGTATTCCAAATTACAAGAAAAAAACGAAGGAGGATTTGAAATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCATATACGAATAACTGTTATTTTGGAATGTAGCAGTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGGTATTTCTAGATATATTACTCAAAAGAATCGACACAATACACCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTTTTGTTGCAAACATACGATTCACGTCGAGATAAAGAAATAG
Protein sequence	>Msa0924820 MYSKLQEKNEGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINHIRITVILECSSCDKKSVNKESRGISRYITQKNRHNTPSRLELRKFCPFCCKHTIHVEIKK*