Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398620 | YP_009657433.1 | 94.118 | 136 | 6 | 1 | 1 | 134 | 49 | 184 | 3.68e-83 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398620 | sp|B5LMN0|ATPF_CICAR | 91.603 | 131 | 9 | 1 | 6 | 134 | 54 | 184 | 3.40e-80 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398620 | A0A4P8F494 | 94.118 | 136 | 6 | 1 | 1 | 134 | 49 | 184 | 1.76e-83 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040190 | Msa0398620 | 0.813155 | 2.953870e-51 | -8.615850e-47 |
| Msa0087880 | Msa0398620 | 0.804915 | 1.717921e-49 | -8.615850e-47 |
| Msa0095140 | Msa0398620 | 0.816449 | 5.498974e-52 | -8.615850e-47 |
| Msa0095240 | Msa0398620 | 0.829679 | 4.496634e-55 | -8.615850e-47 |
| Msa0095270 | Msa0398620 | 0.817538 | 3.130879e-52 | -8.615850e-47 |
| Msa0134550 | Msa0398620 | 0.812526 | 4.055321e-51 | -8.615850e-47 |
| Msa0156780 | Msa0398620 | 0.803252 | 3.810118e-49 | -8.615850e-47 |
| Msa0181290 | Msa0398620 | 0.806586 | 7.654877e-50 | -8.615850e-47 |
| Msa0193200 | Msa0398620 | 0.843841 | 1.093309e-58 | -8.615850e-47 |
| Msa0221860 | Msa0398620 | 0.835716 | 1.427362e-56 | -8.615850e-47 |
| Msa0398620 | Msa0427050 | 0.804218 | 2.400744e-49 | -8.615850e-47 |
| Msa0398620 | Msa0449900 | 0.845189 | 4.743762e-59 | -8.615850e-47 |
| Msa0398620 | Msa0449930 | 0.866115 | 3.610324e-65 | -8.615850e-47 |
| Msa0398620 | Msa0475830 | 0.809084 | 2.253547e-50 | -8.615850e-47 |
| Msa0398620 | Msa0545910 | 0.806595 | 7.620635e-50 | -8.615850e-47 |
| Msa0398620 | Msa0582570 | 0.827488 | 1.521891e-54 | -8.615850e-47 |
| Msa0398620 | Msa0582580 | 0.814616 | 1.407214e-51 | -8.615850e-47 |
| Msa0398620 | Msa0626890 | 0.801285 | 9.677963e-49 | -8.615850e-47 |
| Msa0398620 | Msa0635990 | 0.802863 | 4.583829e-49 | -8.615850e-47 |
| Msa0398620 | Msa0657820 | 0.818279 | 2.129584e-52 | -8.615850e-47 |
| Msa0398620 | Msa0668630 | 0.848332 | 6.555098e-60 | -8.615850e-47 |
| Msa0398620 | Msa0727040 | 0.829900 | 3.973049e-55 | -8.615850e-47 |
| Msa0398620 | Msa0839730 | 0.802435 | 5.618128e-49 | -8.615850e-47 |
| Msa0398620 | Msa0924820 | 0.831186 | 1.925832e-55 | -8.615850e-47 |
| Msa0398620 | Msa0924970 | 0.851956 | 6.330375e-61 | -8.615850e-47 |
| Msa0398620 | Msa0925020 | 0.821155 | 4.693388e-53 | -8.615850e-47 |
| Msa0398620 | Msa0930990 | 0.831146 | 1.969083e-55 | -8.615850e-47 |
| Msa0398620 | Msa0983670 | 0.814901 | 1.216554e-51 | -8.615850e-47 |
| Msa0398620 | Msa1008960 | 0.808820 | 2.566417e-50 | -8.615850e-47 |
| Msa0398620 | Msa1086020 | 0.822215 | 2.669208e-53 | -8.615850e-47 |
| Msa0398620 | Msa1086160 | 0.806164 | 9.393832e-50 | -8.615850e-47 |
| Msa0398620 | Msa1086330 | 0.810710 | 1.006565e-50 | -8.615850e-47 |
| Msa0398620 | Msa1086340 | 0.811271 | 7.608775e-51 | -8.615850e-47 |
| Msa0398620 | Msa1086410 | 0.808255 | 3.387692e-50 | -8.615850e-47 |
| Msa0398620 | Msa1086520 | 0.824628 | 7.280233e-54 | -8.615850e-47 |
| Msa0398620 | Msa1086630 | 0.814257 | 1.689571e-51 | -8.615850e-47 |
| Msa0398620 | Msa1086690 | 0.820818 | 5.609954e-53 | -8.615850e-47 |
| Msa0398620 | Msa1086830 | 0.807677 | 4.497506e-50 | -8.615850e-47 |
| Msa0398620 | Msa1087000 | 0.817837 | 2.680504e-52 | -8.615850e-47 |
| Msa0398620 | Msa1208070 | 0.807162 | 5.782925e-50 | -8.615850e-47 |
| Msa0398620 | Msa1256280 | 0.815717 | 8.012845e-52 | -8.615850e-47 |
| Msa0398620 | Msa1354850 | 0.839730 | 1.330770e-57 | -8.615850e-47 |
| Msa0398620 | Msa1355020 | 0.825351 | 4.914064e-54 | -8.615850e-47 |
| Msa0398620 | Msa1385940 | 0.805858 | 1.089520e-49 | -8.615850e-47 |
| Msa0398620 | Msa1387090 | 0.812469 | 4.174398e-51 | -8.615850e-47 |
| Msa0398620 | Msa1394090 | 0.827847 | 1.247520e-54 | -8.615850e-47 |
| Msa0398620 | Msa1394100 | 0.820999 | 5.096684e-53 | -8.615850e-47 |
| Msa0398620 | Msa1394280 | 0.809234 | 2.092769e-50 | -8.615850e-47 |
| Msa0398620 | Msa1415120 | 0.814647 | 1.385059e-51 | -8.615850e-47 |
| Msa0268220 | Msa0398620 | 0.809674 | 1.683931e-50 | -8.615850e-47 |
| Msa0268340 | Msa0398620 | 0.815143 | 1.074986e-51 | -8.615850e-47 |
| Msa0268460 | Msa0398620 | 0.825160 | 5.452567e-54 | -8.615850e-47 |
| Msa0268500 | Msa0398620 | 0.822226 | 2.653279e-53 | -8.615850e-47 |
| Msa0268680 | Msa0398620 | 0.816343 | 5.808300e-52 | -8.615850e-47 |
| Msa0268900 | Msa0398620 | 0.804705 | 1.900349e-49 | -8.615850e-47 |
| Msa0269100 | Msa0398620 | 0.838774 | 2.355369e-57 | -8.615850e-47 |
| Msa0344240 | Msa0398620 | 0.804710 | 1.895251e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398620 | MtrunA17_CPg0492961 | 95.420 | 131 | 4 | 1 | 6 | 134 | 52 | 182 | 6.45e-85 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398620 | ATCG00130.1 | 80.469 | 128 | 23 | 1 | 6 | 131 | 54 | 181 | 2.82e-68 | 204 |
Find 20 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTAATATTGATATGTTT+GGG | 0.275522 | 3_2:+20512086 | Msa0398620:CDS |
| GGTGCTAATATTGATATGTT+TGG | 0.316362 | 3_2:+20512085 | Msa0398620:CDS |
| TAATTCAATTTATACAACTT+TGG | 0.388293 | 3_2:+20511910 | Msa0398620:CDS |
| GCGGATCGGTTTCGAGTGAA+TGG | 0.446998 | 3_2:+20511851 | Msa0398620:CDS |
| TTCAAAATTCAGAAGAACTA+CGG | 0.449969 | 3_2:+20511774 | Msa0398620:CDS |
| GGAAGCAGCCGTTGAACAGC+TGG | 0.450450 | 3_2:+20511796 | Msa0398620:CDS |
| ACAAGCATTACAAGGAGCTC+TGG | 0.452163 | 3_2:+20512015 | Msa0398620:CDS |
| TCAAAATTCAGAAGAACTAC+GGG | 0.510719 | 3_2:+20511775 | Msa0398620:CDS |
| TGCTTTCTCCAGCTGTTCAA+CGG | 0.514299 | 3_2:-20511804 | None:intergenic |
| AGCTGGAGAAAGCACGGGTA+AGG | 0.516157 | 3_2:+20511813 | Msa0398620:CDS |
| CAAGCATTACAAGGAGCTCT+GGG | 0.568354 | 3_2:+20512016 | Msa0398620:CDS |
| AAGTAGAAACGGAAGCGGAT+CGG | 0.570689 | 3_2:+20511837 | Msa0398620:CDS |
| TTGAACAGCTGGAGAAAGCA+CGG | 0.583807 | 3_2:+20511807 | Msa0398620:CDS |
| TGCTAATATTGATATGTTTG+GGG | 0.586102 | 3_2:+20512087 | Msa0398620:CDS |
| CGATTAATCAAGTGCAACAG+AGG | 0.596922 | 3_2:+20511984 | Msa0398620:CDS |
| ACGGGTAAGGAAAGTAGAAA+CGG | 0.601462 | 3_2:+20511826 | Msa0398620:CDS |
| GAGTTACATTTACGTACGAT+CGG | 0.617220 | 3_2:+20512064 | Msa0398620:CDS |
| TGAACAGCTGGAGAAAGCAC+GGG | 0.617623 | 3_2:+20511808 | Msa0398620:CDS |
| AAGGAAAGTAGAAACGGAAG+CGG | 0.641936 | 3_2:+20511832 | Msa0398620:CDS |
| GATTAATCAAGTGCAACAGA+GGG | 0.644246 | 3_2:+20511985 | Msa0398620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCTTAAATTACAAATTA+AGG | + | chr3_2:20509645-20509664 | Msa0398620:intron | 15.0% |
| !! | TCTATTGTGTATAAAATTTA+TGG | - | chr3_2:20509695-20509714 | None:intergenic | 15.0% |
| !! | CTAAAAAATTCATAATTATC+CGG | - | chr3_2:20509943-20509962 | None:intergenic | 15.0% |
| !!! | TTTTTAGATTCTAAAAAATC+CGG | + | chr3_2:20509956-20509975 | Msa0398620:intron | 15.0% |
| !! | ATCATTATCAGTATTAAAAA+AGG | + | chr3_2:20510567-20510586 | Msa0398620:intron | 15.0% |
| !! | ATAAATTAATCAGAATTCTT+TGG | + | chr3_2:20511447-20511466 | Msa0398620:intron | 15.0% |
| !! | CAATACAAGATTAAAATATT+TGG | - | chr3_2:20511529-20511548 | None:intergenic | 15.0% |
| !!! | CAAATATTTTAATCTTGTAT+TGG | + | chr3_2:20511527-20511546 | Msa0398620:intron | 15.0% |
| !! | TAATTCAATTTATACAACTT+TGG | + | chr3_2:20511910-20511929 | Msa0398620:CDS | 15.0% |
| !! | AATTACAAATTAAGGTGATT+CGG | + | chr3_2:20509653-20509672 | Msa0398620:intron | 20.0% |
| !! | ATAAAATTTATGGTTTCGAT+TGG | - | chr3_2:20509685-20509704 | None:intergenic | 20.0% |
| !!! | CTAATAAGTTGTTTTATAGT+TGG | + | chr3_2:20509870-20509889 | Msa0398620:intron | 20.0% |
| !! | GTCATATATATATAATGAAC+TGG | + | chr3_2:20509901-20509920 | Msa0398620:intron | 20.0% |
| !!! | AATTAAAAAGTATTCCTGAA+AGG | - | chr3_2:20510062-20510081 | None:intergenic | 20.0% |
| !! | ATTCTGATTAATTTATACGT+AGG | - | chr3_2:20511443-20511462 | None:intergenic | 20.0% |
| !! | TACAAGATTAAAATATTTGG+AGG | - | chr3_2:20511526-20511545 | None:intergenic | 20.0% |
| ! | AAATTCATAATTATCCGGTT+AGG | - | chr3_2:20509938-20509957 | None:intergenic | 25.0% |
| ! | AATAGCAAATCCTGTATTTA+TGG | + | chr3_2:20510030-20510049 | Msa0398620:intron | 25.0% |
| ! | ATAGCAAATCCTGTATTTAT+GGG | + | chr3_2:20510031-20510050 | Msa0398620:intron | 25.0% |
| !! | CAAAGCATTATATACTCAAA+AGG | - | chr3_2:20510102-20510121 | None:intergenic | 25.0% |
| !!! | ACTTTTGAGTAATCCTTTTT+TGG | + | chr3_2:20510150-20510169 | Msa0398620:intron | 25.0% |
| ! | GCAGTATTCATGAATAATAA+AGG | - | chr3_2:20510195-20510214 | None:intergenic | 25.0% |
| ! | AATATTTATGCACAAAGAAC+AGG | - | chr3_2:20511293-20511312 | None:intergenic | 25.0% |
| ! | TTTGCTGACAATTATTTGTT+TGG | + | chr3_2:20511490-20511509 | Msa0398620:intron | 25.0% |
| ! | TGTTTAGAAATAGAGAAAAG+AGG | + | chr3_2:20511565-20511584 | Msa0398620:intron | 25.0% |
| ! | CTCATTCGATAATAAAGATA+GGG | + | chr3_2:20511593-20511612 | Msa0398620:intron | 25.0% |
| ! | CATGAATCTTTCAATTCATT+TGG | - | chr3_2:20511649-20511668 | None:intergenic | 25.0% |
| ! | TGAATTGAAAGATTCATGTT+TGG | + | chr3_2:20511651-20511670 | Msa0398620:intron | 25.0% |
| ! | TTCAAAATTCAGAAGAACTA+CGG | + | chr3_2:20511774-20511793 | Msa0398620:CDS | 25.0% |
| !! | GATTCATTTTGAACAACAAA+GGG | + | chr3_2:20511961-20511980 | Msa0398620:CDS | 25.0% |
| ! | GTGCTAATATTGATATGTTT+GGG | + | chr3_2:20512086-20512105 | Msa0398620:CDS | 25.0% |
| ! | TGCTAATATTGATATGTTTG+GGG | + | chr3_2:20512087-20512106 | Msa0398620:CDS | 25.0% |
| ! | GATTTTGTTACATTTCGGAT+TGG | + | chr3_2:20509834-20509853 | Msa0398620:intron | 30.0% |
| !! | AAGTTGTTTTATAGTTGGCA+TGG | + | chr3_2:20509875-20509894 | Msa0398620:intron | 30.0% |
| ! | TAGATTCTAAAAAATCCGGT+TGG | + | chr3_2:20509960-20509979 | Msa0398620:intron | 30.0% |
| ACTTTAATTGTCTTACCAAC+CGG | - | chr3_2:20509978-20509997 | None:intergenic | 30.0% | |
| ! | AAGGTATTACCCATAAATAC+AGG | - | chr3_2:20510043-20510062 | None:intergenic | 30.0% |
| ATTTATGGGTAATACCTTTC+AGG | + | chr3_2:20510045-20510064 | Msa0398620:intron | 30.0% | |
| !! | TGCTTTGTTTAGAATGCAAA+TGG | + | chr3_2:20510115-20510134 | Msa0398620:intron | 30.0% |
| ! | TTGTTTAGAATGCAAATGGT+TGG | + | chr3_2:20510119-20510138 | Msa0398620:intron | 30.0% |
| ! | TGTTTAGAATGCAAATGGTT+GGG | + | chr3_2:20510120-20510139 | Msa0398620:intron | 30.0% |
| !!! | TGAGTAATCCTTTTTTGGAA+AGG | + | chr3_2:20510155-20510174 | Msa0398620:intron | 30.0% |
| !!! | GAGTAATCCTTTTTTGGAAA+GGG | + | chr3_2:20510156-20510175 | Msa0398620:intron | 30.0% |
| CAAATAACCCTTTCCAAAAA+AGG | - | chr3_2:20510166-20510185 | None:intergenic | 30.0% | |
| GATATACAAAGACATGGAAA+GGG | - | chr3_2:20511255-20511274 | None:intergenic | 30.0% | |
| AGATATACAAAGACATGGAA+AGG | - | chr3_2:20511256-20511275 | None:intergenic | 30.0% | |
| TCAATTCCGCATTGTATAAA+AGG | - | chr3_2:20511417-20511436 | None:intergenic | 30.0% | |
| AGAAATAGAGAAAAGAGGAT+AGG | + | chr3_2:20511570-20511589 | Msa0398620:intron | 30.0% | |
| GCTCATTCGATAATAAAGAT+AGG | + | chr3_2:20511592-20511611 | Msa0398620:intron | 30.0% | |
| AGATAGGGAAATTTCCTATA+CGG | + | chr3_2:20511608-20511627 | Msa0398620:intron | 30.0% | |
| TGAAAGATTCATGTTTGGTT+CGG | + | chr3_2:20511656-20511675 | Msa0398620:intron | 30.0% | |
| TCAAAATTCAGAAGAACTAC+GGG | + | chr3_2:20511775-20511794 | Msa0398620:CDS | 30.0% | |
| ! | CAATTTTTCTCGTTCTATCT+CGG | - | chr3_2:20511882-20511901 | None:intergenic | 30.0% |
| ! | CGATTCATTTTGAACAACAA+AGG | + | chr3_2:20511960-20511979 | Msa0398620:CDS | 30.0% |
| ! | GTTTTACAACAAGCATTACA+AGG | + | chr3_2:20512007-20512026 | Msa0398620:CDS | 30.0% |
| GGTGCTAATATTGATATGTT+TGG | + | chr3_2:20512085-20512104 | Msa0398620:CDS | 30.0% | |
| ! | CGGGAGATTTTGTTACATTT+CGG | + | chr3_2:20509829-20509848 | Msa0398620:intron | 35.0% |
| TGGTTTAGATCAATCCTAAC+CGG | + | chr3_2:20509921-20509940 | Msa0398620:intron | 35.0% | |
| ! | GTTTAGAATGCAAATGGTTG+GGG | + | chr3_2:20510121-20510140 | Msa0398620:intron | 35.0% |
| ! | TTTAGAATGCAAATGGTTGG+GGG | + | chr3_2:20510122-20510141 | Msa0398620:intron | 35.0% |
| ATTCCGCATTGTATAAAAGG+AGG | - | chr3_2:20511414-20511433 | None:intergenic | 35.0% | |
| ! | GAAAGATTCATGTTTGGTTC+GGG | + | chr3_2:20511657-20511676 | Msa0398620:intron | 35.0% |
| GATTAATCAAGTGCAACAGA+GGG | + | chr3_2:20511985-20512004 | Msa0398620:CDS | 35.0% | |
| GAGTTACATTTACGTACGAT+CGG | + | chr3_2:20512064-20512083 | Msa0398620:CDS | 35.0% | |
| TAACAAAATCTCCCGCTCTT+CGG | - | chr3_2:20509824-20509843 | None:intergenic | 40.0% | |
| AAAAGCAAACCCCATAGAGA+AGG | + | chr3_2:20510702-20510721 | Msa0398620:intron | 40.0% | |
| AAAGCAAACCCCATAGAGAA+GGG | + | chr3_2:20510703-20510722 | Msa0398620:intron | 40.0% | |
| CTGGCAGATATACAAAGACA+TGG | - | chr3_2:20511261-20511280 | None:intergenic | 40.0% | |
| CATGTCTTTGTATATCTGCC+AGG | + | chr3_2:20511259-20511278 | Msa0398620:intron | 40.0% | |
| ! | CCTGCTACTTCTTTGTATGA+GGG | - | chr3_2:20511377-20511396 | None:intergenic | 40.0% |
| ! | ACCTGCTACTTCTTTGTATG+AGG | - | chr3_2:20511378-20511397 | None:intergenic | 40.0% |
| ! | ACGCCTCCTTTTATACAATG+CGG | + | chr3_2:20511408-20511427 | Msa0398620:intron | 40.0% |
| TCTCACACTCAATTCCGTAT+AGG | - | chr3_2:20511625-20511644 | None:intergenic | 40.0% | |
| ACGGGTAAGGAAAGTAGAAA+CGG | + | chr3_2:20511826-20511845 | Msa0398620:CDS | 40.0% | |
| AAGGAAAGTAGAAACGGAAG+CGG | + | chr3_2:20511832-20511851 | Msa0398620:CDS | 40.0% | |
| CGATTAATCAAGTGCAACAG+AGG | + | chr3_2:20511984-20512003 | Msa0398620:CDS | 40.0% | |
| ACACCCTAGTACATGTTCCT+CGG | + | chr3_2:20509784-20509803 | Msa0398620:intron | 45.0% | |
| AACAAAATCTCCCGCTCTTC+GGG | - | chr3_2:20509823-20509842 | None:intergenic | 45.0% | |
| AAGCAAACCCCATAGAGAAG+GGG | + | chr3_2:20510704-20510723 | Msa0398620:intron | 45.0% | |
| GACCGTATCAACAATTCCGT+GGG | + | chr3_2:20511199-20511218 | Msa0398620:intron | 45.0% | |
| AGCCCACGGAATTGTTGATA+CGG | - | chr3_2:20511204-20511223 | None:intergenic | 45.0% | |
| AAAGAACAGGCAAAGCTTCC+TGG | - | chr3_2:20511280-20511299 | None:intergenic | 45.0% | |
| ACAAGCAGGAGAATGTATGC+TGG | - | chr3_2:20511354-20511373 | None:intergenic | 45.0% | |
| TCTTTGTATGAGGGACAAGC+AGG | - | chr3_2:20511368-20511387 | None:intergenic | 45.0% | |
| CCCTCATACAAAGAAGTAGC+AGG | + | chr3_2:20511374-20511393 | Msa0398620:intron | 45.0% | |
| TGCTTTCTCCAGCTGTTCAA+CGG | - | chr3_2:20511807-20511826 | None:intergenic | 45.0% | |
| TTGAACAGCTGGAGAAAGCA+CGG | + | chr3_2:20511807-20511826 | Msa0398620:CDS | 45.0% | |
| AAGTAGAAACGGAAGCGGAT+CGG | + | chr3_2:20511837-20511856 | Msa0398620:CDS | 45.0% | |
| ACAAGCATTACAAGGAGCTC+TGG | + | chr3_2:20512015-20512034 | Msa0398620:CDS | 45.0% | |
| CAAGCATTACAAGGAGCTCT+GGG | + | chr3_2:20512016-20512035 | Msa0398620:CDS | 45.0% | |
| ACAAAATCTCCCGCTCTTCG+GGG | - | chr3_2:20509822-20509841 | None:intergenic | 50.0% | |
| AGCAAACCCCATAGAGAAGG+GGG | + | chr3_2:20510705-20510724 | Msa0398620:intron | 50.0% | |
| CGACCGTATCAACAATTCCG+TGG | + | chr3_2:20511198-20511217 | Msa0398620:intron | 50.0% | |
| ! | TGAACAGCTGGAGAAAGCAC+GGG | + | chr3_2:20511808-20511827 | Msa0398620:CDS | 50.0% |
| GCGCCGAGGAACATGTACTA+GGG | - | chr3_2:20509790-20509809 | None:intergenic | 55.0% | |
| ! | AGCGCCGAGGAACATGTACT+AGG | - | chr3_2:20509791-20509810 | None:intergenic | 55.0% |
| ! | TACATGTTCCTCGGCGCTGA+GGG | + | chr3_2:20509793-20509812 | Msa0398620:intron | 55.0% |
| AACCCCATAGAGAAGGGGGA+AGG | + | chr3_2:20510709-20510728 | Msa0398620:intron | 55.0% | |
| ACCCCATAGAGAAGGGGGAA+GGG | + | chr3_2:20510710-20510729 | Msa0398620:intron | 55.0% | |
| TCCCCTTCCCCCTTCTCTAT+GGG | - | chr3_2:20510715-20510734 | None:intergenic | 55.0% | |
| ATAGAGAAGGGGGAAGGGGA+GGG | + | chr3_2:20510715-20510734 | Msa0398620:intron | 55.0% | |
| GCAGAAGAAGCTCAAGCCCA+CGG | - | chr3_2:20511218-20511237 | None:intergenic | 55.0% | |
| ! | AGCTGGAGAAAGCACGGGTA+AGG | + | chr3_2:20511813-20511832 | Msa0398620:CDS | 55.0% |
| ! | GCGGATCGGTTTCGAGTGAA+TGG | + | chr3_2:20511851-20511870 | Msa0398620:CDS | 55.0% |
| GTACATGTTCCTCGGCGCTG+AGG | + | chr3_2:20509792-20509811 | Msa0398620:intron | 60.0% | |
| CCCCTTCCCCCTTCTCTATG+GGG | - | chr3_2:20510714-20510733 | None:intergenic | 60.0% | |
| CCCCATAGAGAAGGGGGAAG+GGG | + | chr3_2:20510711-20510730 | Msa0398620:intron | 60.0% | |
| CTCCCCTTCCCCCTTCTCTA+TGG | - | chr3_2:20510716-20510735 | None:intergenic | 60.0% | |
| CATAGAGAAGGGGGAAGGGG+AGG | + | chr3_2:20510714-20510733 | Msa0398620:intron | 60.0% | |
| TAGAGAAGGGGGAAGGGGAG+GGG | + | chr3_2:20510716-20510735 | Msa0398620:intron | 60.0% | |
| GGAAGCAGCCGTTGAACAGC+TGG | + | chr3_2:20511796-20511815 | Msa0398620:CDS | 60.0% | |
| !! | CTGAGGGCATCCCCGAAGAG+CGG | + | chr3_2:20509809-20509828 | Msa0398620:intron | 65.0% |
| !! | TGAGGGCATCCCCGAAGAGC+GGG | + | chr3_2:20509810-20509829 | Msa0398620:intron | 65.0% |
| AGAGAAGGGGGAAGGGGAGG+GGG | + | chr3_2:20510717-20510736 | Msa0398620:intron | 65.0% | |
| ! | CGGGGATGCCCTCAGCGCCG+AGG | - | chr3_2:20509804-20509823 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 20509630 | 20512132 | 20509630 | ID=Msa0398620;Name=Msa0398620 |
| chr3_2 | mRNA | 20509630 | 20512132 | 20509630 | ID=Msa0398620-mRNA-1;Parent=Msa0398620;Name=Msa0398620-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.33|1|1|3|0|134 |
| chr3_2 | exon | 20509630 | 20509637 | 20509630 | ID=Msa0398620-mRNA-1:exon:4458;Parent=Msa0398620-mRNA-1 |
| chr3_2 | exon | 20509889 | 20509896 | 20509889 | ID=Msa0398620-mRNA-1:exon:4459;Parent=Msa0398620-mRNA-1 |
| chr3_2 | exon | 20511744 | 20512132 | 20511744 | ID=Msa0398620-mRNA-1:exon:4460;Parent=Msa0398620-mRNA-1 |
| chr3_2 | CDS | 20509630 | 20509637 | 20509630 | ID=Msa0398620-mRNA-1:cds;Parent=Msa0398620-mRNA-1 |
| chr3_2 | CDS | 20509889 | 20509896 | 20509889 | ID=Msa0398620-mRNA-1:cds;Parent=Msa0398620-mRNA-1 |
| chr3_2 | CDS | 20511744 | 20512132 | 20511744 | ID=Msa0398620-mRNA-1:cds;Parent=Msa0398620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
