Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924970 | YP_009141707.1 | 100.000 | 110 | 0 | 0 | 68 | 177 | 1 | 110 | 5.96e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924970 | sp|P49169|RR18_PEA | 82.727 | 110 | 19 | 0 | 68 | 177 | 1 | 110 | 2.16e-54 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034800 | Msa0924970 | 0.814325 | 1.632109e-51 | -8.615850e-47 |
| Msa0039200 | Msa0924970 | 0.815206 | 1.041135e-51 | -8.615850e-47 |
| Msa0040190 | Msa0924970 | 0.824498 | 7.811577e-54 | -8.615850e-47 |
| Msa0086820 | Msa0924970 | 0.816758 | 4.689210e-52 | -8.615850e-47 |
| Msa0087880 | Msa0924970 | 0.848111 | 7.544929e-60 | -8.615850e-47 |
| Msa0095140 | Msa0924970 | 0.877697 | 5.103542e-69 | -8.615850e-47 |
| Msa0095240 | Msa0924970 | 0.910510 | 1.727596e-82 | -8.615850e-47 |
| Msa0095270 | Msa0924970 | 0.880382 | 5.749863e-70 | -8.615850e-47 |
| Msa0606680 | Msa0924970 | 0.800403 | 1.465192e-48 | -8.615850e-47 |
| Msa0635990 | Msa0924970 | 0.811663 | 6.255110e-51 | -8.615850e-47 |
| Msa0657820 | Msa0924970 | 0.807542 | 4.804682e-50 | -8.615850e-47 |
| Msa0668630 | Msa0924970 | 0.958235 | 3.888775e-116 | -8.615850e-47 |
| Msa0687320 | Msa0924970 | 0.808737 | 2.674198e-50 | -8.615850e-47 |
| Msa0727040 | Msa0924970 | 0.927231 | 1.567091e-91 | -8.615850e-47 |
| Msa0766880 | Msa0924970 | 0.830095 | 3.560920e-55 | -8.615850e-47 |
| Msa0778060 | Msa0924970 | 0.803987 | 2.680938e-49 | -8.615850e-47 |
| Msa0796460 | Msa0924970 | 0.800167 | 1.636038e-48 | -8.615850e-47 |
| Msa0801390 | Msa0924970 | 0.813252 | 2.812022e-51 | -8.615850e-47 |
| Msa0839730 | Msa0924970 | 0.834030 | 3.794022e-56 | -8.615850e-47 |
| Msa0133670 | Msa0924970 | 0.815307 | 9.886380e-52 | -8.615850e-47 |
| Msa0133880 | Msa0924970 | 0.818192 | 2.227922e-52 | -8.615850e-47 |
| Msa0134550 | Msa0924970 | 0.830821 | 2.366078e-55 | -8.615850e-47 |
| Msa0156780 | Msa0924970 | 0.834336 | 3.179559e-56 | -8.615850e-47 |
| Msa0184120 | Msa0924970 | 0.816793 | 4.603974e-52 | -8.615850e-47 |
| Msa0189050 | Msa0924970 | 0.818548 | 1.850662e-52 | -8.615850e-47 |
| Msa0193200 | Msa0924970 | 0.803446 | 3.473063e-49 | -8.615850e-47 |
| Msa0218590 | Msa0924970 | 0.802219 | 6.223905e-49 | -8.615850e-47 |
| Msa0221860 | Msa0924970 | 0.916990 | 9.146068e-86 | -8.615850e-47 |
| Msa0231310 | Msa0924970 | 0.823687 | 1.211155e-53 | -8.615850e-47 |
| Msa0398610 | Msa0924970 | 0.922833 | 5.878732e-89 | -8.615850e-47 |
| Msa0398620 | Msa0924970 | 0.851956 | 6.330375e-61 | -8.615850e-47 |
| Msa0405430 | Msa0924970 | 0.804469 | 2.127987e-49 | -8.615850e-47 |
| Msa0405520 | Msa0924970 | 0.817856 | 2.654200e-52 | -8.615850e-47 |
| Msa0449900 | Msa0924970 | 0.972318 | 1.433647e-134 | -8.615850e-47 |
| Msa0449930 | Msa0924970 | 0.844577 | 6.936575e-59 | -8.615850e-47 |
| Msa0451370 | Msa0924970 | 0.804553 | 2.044552e-49 | -8.615850e-47 |
| Msa0472870 | Msa0924970 | 0.802097 | 6.594714e-49 | -8.615850e-47 |
| Msa0475830 | Msa0924970 | 0.857802 | 1.273548e-62 | -8.615850e-47 |
| Msa0256170 | Msa0924970 | 0.807750 | 4.338546e-50 | -8.615850e-47 |
| Msa0268220 | Msa0924970 | 0.899177 | 2.565277e-77 | -8.615850e-47 |
| Msa0268340 | Msa0924970 | 0.884371 | 2.030090e-71 | -8.615850e-47 |
| Msa0268460 | Msa0924970 | 0.911164 | 8.286812e-83 | -8.615850e-47 |
| Msa0268500 | Msa0924970 | 0.895913 | 6.097457e-76 | -8.615850e-47 |
| Msa0268680 | Msa0924970 | 0.885573 | 7.234950e-72 | -8.615850e-47 |
| Msa0268690 | Msa0924970 | 0.838967 | 2.099096e-57 | -8.615850e-47 |
| Msa0268900 | Msa0924970 | 0.883261 | 5.212481e-71 | -8.615850e-47 |
| Msa0269100 | Msa0924970 | 0.911536 | 5.439358e-83 | -8.615850e-47 |
| Msa0309160 | Msa0924970 | 0.815328 | 9.781425e-52 | -8.615850e-47 |
| Msa0321180 | Msa0924970 | 0.801781 | 7.658440e-49 | -8.615850e-47 |
| Msa0321200 | Msa0924970 | 0.804618 | 1.981426e-49 | -8.615850e-47 |
| Msa0344240 | Msa0924970 | 0.858704 | 6.862510e-63 | -8.615850e-47 |
| Msa0344250 | Msa0924970 | 0.889958 | 1.518705e-73 | -8.615850e-47 |
| Msa0564000 | Msa0924970 | 0.807998 | 3.843575e-50 | -8.615850e-47 |
| Msa0568490 | Msa0924970 | 0.812605 | 3.898453e-51 | -8.615850e-47 |
| Msa0582570 | Msa0924970 | 0.906921 | 8.842550e-81 | -8.615850e-47 |
| Msa0582580 | Msa0924970 | 0.903962 | 2.015673e-79 | -8.615850e-47 |
| Msa0587060 | Msa0924970 | 0.807585 | 4.704797e-50 | -8.615850e-47 |
| Msa0591290 | Msa0924970 | 0.814357 | 1.605321e-51 | -8.615850e-47 |
| Msa0591370 | Msa0924970 | 0.810349 | 1.204936e-50 | -8.615850e-47 |
| Msa0924820 | Msa0924970 | 0.952084 | 5.177869e-110 | -8.615850e-47 |
| Msa0924970 | Msa0925020 | 0.915677 | 4.427600e-85 | -8.615850e-47 |
| Msa0924970 | Msa0930990 | 0.968796 | 3.448330e-129 | -8.615850e-47 |
| Msa0924970 | Msa0931280 | 0.803550 | 3.303732e-49 | -8.615850e-47 |
| Msa0924970 | Msa0983670 | 0.889190 | 3.023997e-73 | -8.615850e-47 |
| Msa0924970 | Msa1008960 | 0.803569 | 3.274207e-49 | -8.615850e-47 |
| Msa0924970 | Msa1016130 | 0.838969 | 2.096548e-57 | -8.615850e-47 |
| Msa0924970 | Msa1063180 | 0.806631 | 7.490193e-50 | -8.615850e-47 |
| Msa0924970 | Msa1079610 | 0.832237 | 1.060077e-55 | -8.615850e-47 |
| Msa0924970 | Msa1086020 | 0.908292 | 2.004880e-81 | -8.615850e-47 |
| Msa0924970 | Msa1086160 | 0.834257 | 3.327664e-56 | -8.615850e-47 |
| Msa0924970 | Msa1086260 | 0.810570 | 1.079216e-50 | -8.615850e-47 |
| Msa0924970 | Msa1086330 | 0.905872 | 2.711813e-80 | -8.615850e-47 |
| Msa0924970 | Msa1086340 | 0.873110 | 1.895529e-67 | -8.615850e-47 |
| Msa0924970 | Msa1086410 | 0.877424 | 6.353754e-69 | -8.615850e-47 |
| Msa0924970 | Msa1086440 | 0.807770 | 4.297095e-50 | -8.615850e-47 |
| Msa0924970 | Msa1086520 | 0.925187 | 2.574863e-90 | -8.615850e-47 |
| Msa0924970 | Msa1086630 | 0.902531 | 8.814000e-79 | -8.615850e-47 |
| Msa0924970 | Msa1086690 | 0.906063 | 2.212949e-80 | -8.615850e-47 |
| Msa0924970 | Msa1086830 | 0.911851 | 3.805303e-83 | -8.615850e-47 |
| Msa0924970 | Msa1087000 | 0.889537 | 2.215885e-73 | -8.615850e-47 |
| Msa0924970 | Msa1098570 | 0.801192 | 1.011226e-48 | -8.615850e-47 |
| Msa0924970 | Msa1108530 | 0.800246 | 1.577242e-48 | -8.615850e-47 |
| Msa0924970 | Msa1122480 | 0.800170 | 1.633839e-48 | -8.615850e-47 |
| Msa0924970 | Msa1124440 | 0.824406 | 8.211160e-54 | -8.615850e-47 |
| Msa0924970 | Msa1152280 | 0.806780 | 6.965527e-50 | -8.615850e-47 |
| Msa0924970 | Msa1161520 | 0.800535 | 1.376987e-48 | -8.615850e-47 |
| Msa0924970 | Msa1204110 | 0.839390 | 1.630724e-57 | -8.615850e-47 |
| Msa0924970 | Msa1208070 | 0.809410 | 1.918418e-50 | -8.615850e-47 |
| Msa0924970 | Msa1211880 | 0.837782 | 4.241928e-57 | -8.615850e-47 |
| Msa0924970 | Msa1215660 | 0.811477 | 6.866442e-51 | -8.615850e-47 |
| Msa0924970 | Msa1252040 | 0.831888 | 1.293289e-55 | -8.615850e-47 |
| Msa0924970 | Msa1279240 | 0.808078 | 3.695920e-50 | -8.615850e-47 |
| Msa0924970 | Msa1332180 | 0.822866 | 1.883003e-53 | -8.615850e-47 |
| Msa0924970 | Msa1354850 | 0.903621 | 2.870691e-79 | -8.615850e-47 |
| Msa0924970 | Msa1355020 | 0.912811 | 1.268768e-83 | -8.615850e-47 |
| Msa0924970 | Msa1380540 | 0.891143 | 5.197385e-74 | -8.615850e-47 |
| Msa0924970 | Msa1385940 | 0.803889 | 2.809728e-49 | -8.615850e-47 |
| Msa0924970 | Msa1387090 | 0.805308 | 1.421598e-49 | -8.615850e-47 |
| Msa0924970 | Msa1390410 | 0.819270 | 1.268310e-52 | -8.615850e-47 |
| Msa0924970 | Msa1393600 | 0.809151 | 2.179926e-50 | -8.615850e-47 |
| Msa0924970 | Msa1394090 | 0.902706 | 7.365493e-79 | -8.615850e-47 |
| Msa0924970 | Msa1394100 | 0.908453 | 1.682365e-81 | -8.615850e-47 |
| Msa0924970 | Msa1394280 | 0.903774 | 2.450049e-79 | -8.615850e-47 |
| Msa0924970 | Msa1400600 | 0.803354 | 3.628093e-49 | -8.615850e-47 |
| Msa0924970 | Msa1405190 | 0.836675 | 8.143721e-57 | -8.615850e-47 |
| Msa0924970 | Msa1415120 | 0.831338 | 1.766405e-55 | -8.615850e-47 |
| Msa0924970 | Msa1433650 | 0.820338 | 7.232642e-53 | -8.615850e-47 |
| Msa0924970 | Msa1439160 | 0.825398 | 4.790750e-54 | -8.615850e-47 |
| Msa0924970 | Msa1454940 | 0.806894 | 6.589491e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924970 | MtrunA17_Chr4g0015801 | 81.301 | 123 | 10 | 3 | 68 | 177 | 1 | 123 | 5.46e-50 | 157 |
| Msa0924970 | MtrunA17_CPg0492771 | 81.301 | 123 | 10 | 3 | 68 | 177 | 1 | 123 | 5.46e-50 | 157 |
| Msa0924970 | MtrunA17_Chr6g0466591 | 88.889 | 90 | 6 | 1 | 68 | 153 | 1 | 90 | 1.93e-48 | 153 |
| Msa0924970 | MtrunA17_Chr4g0016891 | 86.957 | 92 | 8 | 2 | 68 | 155 | 1 | 92 | 4.34e-45 | 144 |
| Msa0924970 | MtrunA17_Chr7g0237831 | 94.667 | 75 | 2 | 1 | 68 | 140 | 1 | 75 | 5.73e-41 | 132 |
| Msa0924970 | MtrunA17_Chr6g0465781 | 96.610 | 59 | 2 | 0 | 68 | 126 | 1 | 59 | 1.39e-33 | 113 |
| Msa0924970 | MtrunA17_CPg0492791 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
| Msa0924970 | MtrunA17_Chr4g0015781 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
| Msa0924970 | MtrunA17_Chr4g0028951 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
| Msa0924970 | MtrunA17_Chr8g0355611 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 3.22e-14 | 63.5 |
| Msa0924970 | MtrunA17_Chr4g0016881 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 6.32e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924970 | ATCG00650.1 | 70.909 | 110 | 23 | 2 | 68 | 177 | 1 | 101 | 7.17e-44 | 141 |
| Msa0924970 | ATCG00630.1 | 90.000 | 30 | 3 | 0 | 15 | 44 | 1 | 30 | 1.55e-11 | 57.0 |
Find 16 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | 6_2:-67532234 | Msa0924970:CDS |
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 6_2:-67532918 | Msa0924970:CDS |
| GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | 6_2:-67532233 | Msa0924970:CDS |
| AGTTTGTCCCCGATCCAATC+GGG | 0.455483 | 6_2:-67531825 | Msa0924970:CDS |
| GAGTTTGTCCCCGATCCAAT+CGG | 0.465376 | 6_2:-67531826 | Msa0924970:CDS |
| CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | 6_2:-67532901 | Msa0924970:CDS |
| AAAGGTGACGAATTAACAAA+AGG | 0.521079 | 6_2:+67531651 | None:intergenic |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 6_2:-67532911 | Msa0924970:CDS |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 6_2:-67532932 | Msa0924970:CDS |
| GAGTCGCTTAGATTTATCCA+TGG | 0.585856 | 6_2:+67531878 | None:intergenic |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 6_2:+67532916 | None:intergenic |
| GTATAGGAATAAACAAACCA+TGG | 0.629025 | 6_2:-67531895 | Msa0924970:CDS |
| TATCGACTTATTAGTCAACA+AGG | 0.637963 | 6_2:-67531768 | Msa0924970:CDS |
| GTTTGTCCCCGATCCAATCG+GGG | 0.647747 | 6_2:-67531824 | Msa0924970:CDS |
| TTTGTCCCCGATCCAATCGG+GGG | 0.661952 | 6_2:-67531823 | Msa0924970:CDS |
| AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | 6_2:-67532232 | Msa0924970:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATAAAATTAAT+TGG | - | chr6_2:67532115-67532134 | Msa0924970:intron | 0.0% |
| !! | AAAATTAATATAAAATTAAT+TGG | - | chr6_2:67532115-67532134 | Msa0924970:intron | 0.0% |
| !!! | TTTTTTTCATTATTAACAAA+AGG | + | chr6_2:67532927-67532946 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATTATTAACAAA+AGG | + | chr6_2:67532927-67532946 | None:intergenic | 10.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr6_2:67531728-67531747 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr6_2:67531854-67531873 | Msa0924970:CDS | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr6_2:67531948-67531967 | None:intergenic | 15.0% |
| !!! | AATCCTTTTTTTATAAGAAA+TGG | - | chr6_2:67532631-67532650 | Msa0924970:intron | 15.0% |
| !!! | ATCCTTTTTTTATAAGAAAT+GGG | - | chr6_2:67532632-67532651 | Msa0924970:intron | 15.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr6_2:67531728-67531747 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr6_2:67531854-67531873 | Msa0924970:CDS | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr6_2:67531948-67531967 | None:intergenic | 15.0% |
| !!! | AATCCTTTTTTTATAAGAAA+TGG | - | chr6_2:67532631-67532650 | Msa0924970:intron | 15.0% |
| !!! | ATCCTTTTTTTATAAGAAAT+GGG | - | chr6_2:67532632-67532651 | Msa0924970:intron | 15.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr6_2:67531575-67531594 | Msa0924970:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr6_2:67531727-67531746 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr6_2:67531729-67531748 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr6_2:67531727-67531746 | Msa0924970:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr6_2:67531782-67531801 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr6_2:67531857-67531876 | Msa0924970:CDS | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr6_2:67531863-67531882 | Msa0924970:CDS | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr6_2:67531979-67531998 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr6_2:67532279-67532298 | Msa0924970:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr6_2:67532315-67532334 | Msa0924970:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | - | chr6_2:67532449-67532468 | Msa0924970:intron | 20.0% |
| !! | ATCCCATTTCTTATAAAAAA+AGG | + | chr6_2:67532637-67532656 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | - | chr6_2:67532640-67532659 | Msa0924970:intron | 20.0% |
| !!! | AATTAATCGTTGTTGTTTTA+AGG | + | chr6_2:67532847-67532866 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGAACAGTAGT+AGG | + | chr6_2:67532984-67533003 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr6_2:67531575-67531594 | Msa0924970:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr6_2:67531727-67531746 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr6_2:67531729-67531748 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr6_2:67531727-67531746 | Msa0924970:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr6_2:67531782-67531801 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr6_2:67531857-67531876 | Msa0924970:CDS | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr6_2:67531863-67531882 | Msa0924970:CDS | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr6_2:67531979-67531998 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr6_2:67532279-67532298 | Msa0924970:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr6_2:67532315-67532334 | Msa0924970:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | - | chr6_2:67532449-67532468 | Msa0924970:intron | 20.0% |
| !! | ATCCCATTTCTTATAAAAAA+AGG | + | chr6_2:67532637-67532656 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | - | chr6_2:67532640-67532659 | Msa0924970:intron | 20.0% |
| !!! | AATTAATCGTTGTTGTTTTA+AGG | + | chr6_2:67532847-67532866 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGAACAGTAGT+AGG | + | chr6_2:67532984-67533003 | None:intergenic | 20.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr6_2:67531799-67531818 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | chr6_2:67531800-67531819 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr6_2:67531983-67532002 | Msa0924970:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr6_2:67531984-67532003 | Msa0924970:intron | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | chr6_2:67532233-67532252 | Msa0924970:CDS | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | + | chr6_2:67532490-67532509 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | + | chr6_2:67532491-67532510 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr6_2:67531799-67531818 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | chr6_2:67531800-67531819 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr6_2:67531983-67532002 | Msa0924970:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr6_2:67531984-67532003 | Msa0924970:intron | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | chr6_2:67532233-67532252 | Msa0924970:CDS | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | + | chr6_2:67532490-67532509 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | + | chr6_2:67532491-67532510 | None:intergenic | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr6_2:67531578-67531597 | Msa0924970:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr6_2:67531616-67531635 | Msa0924970:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | - | chr6_2:67531688-67531707 | Msa0924970:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr6_2:67531732-67531751 | Msa0924970:CDS | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | chr6_2:67531889-67531908 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr6_2:67531963-67531982 | Msa0924970:intron | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | chr6_2:67532236-67532255 | Msa0924970:CDS | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr6_2:67532269-67532288 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr6_2:67532323-67532342 | Msa0924970:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr6_2:67532324-67532343 | Msa0924970:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr6_2:67532325-67532344 | Msa0924970:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr6_2:67532421-67532440 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr6_2:67532422-67532441 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | - | chr6_2:67532662-67532681 | Msa0924970:intron | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | - | chr6_2:67532709-67532728 | Msa0924970:intron | 30.0% |
| !! | TATCGACTTATTAGTCAACA+AGG | - | chr6_2:67532789-67532808 | Msa0924970:intron | 30.0% |
| AAAGGTGACGAATTAACAAA+AGG | + | chr6_2:67532909-67532928 | None:intergenic | 30.0% | |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr6_2:67531578-67531597 | Msa0924970:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr6_2:67531616-67531635 | Msa0924970:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | - | chr6_2:67531688-67531707 | Msa0924970:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr6_2:67531732-67531751 | Msa0924970:CDS | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | chr6_2:67531889-67531908 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr6_2:67531963-67531982 | Msa0924970:intron | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | chr6_2:67532236-67532255 | Msa0924970:CDS | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr6_2:67532269-67532288 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr6_2:67532323-67532342 | Msa0924970:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr6_2:67532324-67532343 | Msa0924970:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr6_2:67532325-67532344 | Msa0924970:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr6_2:67532421-67532440 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr6_2:67532422-67532441 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | - | chr6_2:67532662-67532681 | Msa0924970:intron | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | - | chr6_2:67532709-67532728 | Msa0924970:intron | 30.0% |
| !! | TATCGACTTATTAGTCAACA+AGG | - | chr6_2:67532789-67532808 | Msa0924970:intron | 30.0% |
| AAAGGTGACGAATTAACAAA+AGG | + | chr6_2:67532909-67532928 | None:intergenic | 30.0% | |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr6_2:67531892-67531911 | Msa0924970:CDS | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr6_2:67531912-67531931 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr6_2:67531913-67531932 | None:intergenic | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr6_2:67532194-67532213 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | chr6_2:67532243-67532262 | Msa0924970:CDS | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr6_2:67532391-67532410 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | - | chr6_2:67532646-67532665 | Msa0924970:intron | 35.0% |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr6_2:67531892-67531911 | Msa0924970:CDS | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr6_2:67531912-67531931 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr6_2:67531913-67531932 | None:intergenic | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr6_2:67532194-67532213 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | chr6_2:67532243-67532262 | Msa0924970:CDS | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr6_2:67532391-67532410 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | - | chr6_2:67532646-67532665 | Msa0924970:intron | 35.0% |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr6_2:67531879-67531898 | Msa0924970:CDS | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr6_2:67531901-67531920 | Msa0924970:CDS | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr6_2:67532378-67532397 | Msa0924970:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | - | chr6_2:67532472-67532491 | Msa0924970:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | + | chr6_2:67532682-67532701 | None:intergenic | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr6_2:67531879-67531898 | Msa0924970:CDS | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr6_2:67531901-67531920 | Msa0924970:CDS | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr6_2:67532378-67532397 | Msa0924970:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | - | chr6_2:67532472-67532491 | Msa0924970:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | + | chr6_2:67532682-67532701 | None:intergenic | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr6_2:67531644-67531663 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | chr6_2:67531710-67531729 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | chr6_2:67531737-67531756 | Msa0924970:CDS | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | chr6_2:67531738-67531757 | Msa0924970:CDS | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | + | chr6_2:67532749-67532768 | None:intergenic | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr6_2:67531644-67531663 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | chr6_2:67531710-67531729 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | chr6_2:67531737-67531756 | Msa0924970:CDS | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | chr6_2:67531738-67531757 | Msa0924970:CDS | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | + | chr6_2:67532749-67532768 | None:intergenic | 45.0% | |
| !!! | TTATTTATATTTGTTATATA+AGG | + | chr6_2:67532563-67532582 | None:intergenic | 5.0% |
| !!! | TTATTTATATTTGTTATATA+AGG | + | chr6_2:67532563-67532582 | None:intergenic | 5.0% |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr6_2:67531625-67531644 | Msa0924970:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr6_2:67531639-67531658 | Msa0924970:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr6_2:67531646-67531665 | Msa0924970:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | chr6_2:67531709-67531728 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | chr6_2:67531739-67531758 | Msa0924970:CDS | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr6_2:67532250-67532269 | Msa0924970:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | - | chr6_2:67532475-67532494 | Msa0924970:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | - | chr6_2:67532731-67532750 | Msa0924970:intron | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | - | chr6_2:67532732-67532751 | Msa0924970:intron | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | + | chr6_2:67532744-67532763 | None:intergenic | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr6_2:67531625-67531644 | Msa0924970:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr6_2:67531639-67531658 | Msa0924970:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr6_2:67531646-67531665 | Msa0924970:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | chr6_2:67531709-67531728 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | chr6_2:67531739-67531758 | Msa0924970:CDS | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr6_2:67532250-67532269 | Msa0924970:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | - | chr6_2:67532475-67532494 | Msa0924970:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | - | chr6_2:67532731-67532750 | Msa0924970:intron | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | - | chr6_2:67532732-67532751 | Msa0924970:intron | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | + | chr6_2:67532744-67532763 | None:intergenic | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr6_2:67531656-67531675 | Msa0924970:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | chr6_2:67532252-67532271 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | chr6_2:67532249-67532268 | Msa0924970:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | - | chr6_2:67532733-67532752 | Msa0924970:intron | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | - | chr6_2:67532734-67532753 | Msa0924970:intron | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | + | chr6_2:67532743-67532762 | None:intergenic | 55.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr6_2:67531656-67531675 | Msa0924970:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | chr6_2:67532252-67532271 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | chr6_2:67532249-67532268 | Msa0924970:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | - | chr6_2:67532733-67532752 | Msa0924970:intron | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | - | chr6_2:67532734-67532753 | Msa0924970:intron | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | + | chr6_2:67532743-67532762 | None:intergenic | 55.0% | |
| TCGATCCCCCGATTGGATCG+GGG | + | chr6_2:67532742-67532761 | None:intergenic | 60.0% | |
| TCGATCCCCCGATTGGATCG+GGG | + | chr6_2:67532742-67532761 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 67531566 | 67533013 | 67531566 | ID=Msa0924970;Name=Msa0924970 |
| chr6_2 | mRNA | 67531566 | 67533013 | 67531566 | ID=Msa0924970-mRNA-1;Parent=Msa0924970;Name=Msa0924970-mRNA-1;_AED=0.31;_eAED=0.36;_QI=0|0|0|1|0|0|3|0|177 |
| chr6_2 | exon | 67532881 | 67533013 | 67532881 | ID=Msa0924970-mRNA-1:exon:10691;Parent=Msa0924970-mRNA-1 |
| chr6_2 | exon | 67532233 | 67532267 | 67532233 | ID=Msa0924970-mRNA-1:exon:10690;Parent=Msa0924970-mRNA-1 |
| chr6_2 | exon | 67531566 | 67531931 | 67531566 | ID=Msa0924970-mRNA-1:exon:10689;Parent=Msa0924970-mRNA-1 |
| chr6_2 | CDS | 67532881 | 67533013 | 67532881 | ID=Msa0924970-mRNA-1:cds;Parent=Msa0924970-mRNA-1 |
| chr6_2 | CDS | 67532233 | 67532267 | 67532233 | ID=Msa0924970-mRNA-1:cds;Parent=Msa0924970-mRNA-1 |
| chr6_2 | CDS | 67531566 | 67531931 | 67531566 | ID=Msa0924970-mRNA-1:cds;Parent=Msa0924970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
