Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930990 | YP_009141632.1 | 100.000 | 109 | 0 | 0 | 68 | 176 | 1 | 109 | 2.30e-67 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930990 | sp|P49169|RR18_PEA | 83.486 | 109 | 18 | 0 | 68 | 176 | 1 | 109 | 8.89e-54 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034800 | Msa0930990 | 0.805735 | 1.156594e-49 | -8.615850e-47 |
| Msa0039200 | Msa0930990 | 0.804263 | 2.349727e-49 | -8.615850e-47 |
| Msa0040190 | Msa0930990 | 0.821424 | 4.068573e-53 | -8.615850e-47 |
| Msa0086820 | Msa0930990 | 0.806927 | 6.486259e-50 | -8.615850e-47 |
| Msa0087880 | Msa0930990 | 0.840324 | 9.310834e-58 | -8.615850e-47 |
| Msa0095140 | Msa0930990 | 0.868230 | 7.620434e-66 | -8.615850e-47 |
| Msa0095240 | Msa0930990 | 0.893807 | 4.455699e-75 | -8.615850e-47 |
| Msa0095270 | Msa0930990 | 0.873598 | 1.299274e-67 | -8.615850e-47 |
| Msa0668630 | Msa0930990 | 0.942524 | 6.171022e-102 | -8.615850e-47 |
| Msa0727040 | Msa0930990 | 0.917915 | 2.964992e-86 | -8.615850e-47 |
| Msa0766880 | Msa0930990 | 0.817218 | 3.696353e-52 | -8.615850e-47 |
| Msa0839730 | Msa0930990 | 0.822102 | 2.834012e-53 | -8.615850e-47 |
| Msa0133670 | Msa0930990 | 0.805669 | 1.194147e-49 | -8.615850e-47 |
| Msa0133880 | Msa0930990 | 0.809476 | 1.856675e-50 | -8.615850e-47 |
| Msa0134550 | Msa0930990 | 0.824384 | 8.311195e-54 | -8.615850e-47 |
| Msa0156780 | Msa0930990 | 0.816741 | 4.729547e-52 | -8.615850e-47 |
| Msa0184120 | Msa0930990 | 0.805556 | 1.261156e-49 | -8.615850e-47 |
| Msa0189050 | Msa0930990 | 0.811752 | 5.981697e-51 | -8.615850e-47 |
| Msa0193200 | Msa0930990 | 0.804975 | 1.668650e-49 | -8.615850e-47 |
| Msa0221860 | Msa0930990 | 0.907898 | 3.077734e-81 | -8.615850e-47 |
| Msa0231310 | Msa0930990 | 0.816418 | 5.587220e-52 | -8.615850e-47 |
| Msa0398610 | Msa0930990 | 0.911985 | 3.266868e-83 | -8.615850e-47 |
| Msa0398620 | Msa0930990 | 0.831146 | 1.969083e-55 | -8.615850e-47 |
| Msa0405430 | Msa0930990 | 0.800436 | 1.442342e-48 | -8.615850e-47 |
| Msa0405520 | Msa0930990 | 0.812305 | 4.532296e-51 | -8.615850e-47 |
| Msa0449900 | Msa0930990 | 0.956945 | 8.855345e-115 | -8.615850e-47 |
| Msa0449930 | Msa0930990 | 0.827796 | 1.283780e-54 | -8.615850e-47 |
| Msa0451370 | Msa0930990 | 0.801000 | 1.106911e-48 | -8.615850e-47 |
| Msa0472870 | Msa0930990 | 0.800358 | 1.496611e-48 | -8.615850e-47 |
| Msa0475830 | Msa0930990 | 0.852013 | 6.098536e-61 | -8.615850e-47 |
| Msa0256170 | Msa0930990 | 0.805949 | 1.042873e-49 | -8.615850e-47 |
| Msa0268220 | Msa0930990 | 0.882124 | 1.354832e-70 | -8.615850e-47 |
| Msa0268340 | Msa0930990 | 0.887465 | 1.393490e-72 | -8.615850e-47 |
| Msa0268460 | Msa0930990 | 0.899497 | 1.869305e-77 | -8.615850e-47 |
| Msa0268500 | Msa0930990 | 0.889506 | 2.279364e-73 | -8.615850e-47 |
| Msa0268680 | Msa0930990 | 0.873944 | 9.923421e-68 | -8.615850e-47 |
| Msa0268690 | Msa0930990 | 0.823903 | 1.077909e-53 | -8.615850e-47 |
| Msa0268900 | Msa0930990 | 0.876466 | 1.365920e-68 | -8.615850e-47 |
| Msa0269100 | Msa0930990 | 0.902610 | 8.133707e-79 | -8.615850e-47 |
| Msa0309160 | Msa0930990 | 0.807606 | 4.656417e-50 | -8.615850e-47 |
| Msa0344240 | Msa0930990 | 0.846152 | 2.598452e-59 | -8.615850e-47 |
| Msa0344250 | Msa0930990 | 0.882193 | 1.278761e-70 | -8.615850e-47 |
| Msa0582570 | Msa0930990 | 0.888710 | 4.637200e-73 | -8.615850e-47 |
| Msa0582580 | Msa0930990 | 0.884854 | 1.343423e-71 | -8.615850e-47 |
| Msa0591290 | Msa0930990 | 0.821084 | 4.872795e-53 | -8.615850e-47 |
| Msa0924820 | Msa0930990 | 0.934025 | 7.642137e-96 | -8.615850e-47 |
| Msa0924970 | Msa0930990 | 0.968796 | 3.448330e-129 | -8.615850e-47 |
| Msa0925020 | Msa0930990 | 0.895596 | 8.246977e-76 | -8.615850e-47 |
| Msa0930990 | Msa0983670 | 0.859737 | 3.361397e-63 | -8.615850e-47 |
| Msa0930990 | Msa1016130 | 0.827452 | 1.552066e-54 | -8.615850e-47 |
| Msa0930990 | Msa1079610 | 0.817872 | 2.632150e-52 | -8.615850e-47 |
| Msa0930990 | Msa1086020 | 0.886905 | 2.275591e-72 | -8.615850e-47 |
| Msa0930990 | Msa1086160 | 0.816973 | 4.196353e-52 | -8.615850e-47 |
| Msa0930990 | Msa1086260 | 0.803745 | 3.010327e-49 | -8.615850e-47 |
| Msa0930990 | Msa1086330 | 0.895250 | 1.145045e-75 | -8.615850e-47 |
| Msa0930990 | Msa1086340 | 0.863493 | 2.393955e-64 | -8.615850e-47 |
| Msa0930990 | Msa1086410 | 0.869498 | 2.959753e-66 | -8.615850e-47 |
| Msa0930990 | Msa1086520 | 0.914535 | 1.711005e-84 | -8.615850e-47 |
| Msa0930990 | Msa1086630 | 0.885547 | 7.401487e-72 | -8.615850e-47 |
| Msa0930990 | Msa1086690 | 0.898837 | 3.584795e-77 | -8.615850e-47 |
| Msa0930990 | Msa1086830 | 0.895480 | 9.206691e-76 | -8.615850e-47 |
| Msa0930990 | Msa1087000 | 0.885231 | 9.714176e-72 | -8.615850e-47 |
| Msa0930990 | Msa1098570 | 0.808172 | 3.529383e-50 | -8.615850e-47 |
| Msa0930990 | Msa1124440 | 0.805790 | 1.126319e-49 | -8.615850e-47 |
| Msa0930990 | Msa1199690 | 0.800100 | 1.688449e-48 | -8.615850e-47 |
| Msa0930990 | Msa1204110 | 0.823320 | 1.476011e-53 | -8.615850e-47 |
| Msa0930990 | Msa1211880 | 0.831091 | 2.031456e-55 | -8.615850e-47 |
| Msa0930990 | Msa1215660 | 0.806360 | 8.544404e-50 | -8.615850e-47 |
| Msa0930990 | Msa1252040 | 0.822158 | 2.750472e-53 | -8.615850e-47 |
| Msa0930990 | Msa1279240 | 0.803481 | 3.415020e-49 | -8.615850e-47 |
| Msa0930990 | Msa1332180 | 0.811947 | 5.425737e-51 | -8.615850e-47 |
| Msa0930990 | Msa1354850 | 0.897086 | 1.976033e-76 | -8.615850e-47 |
| Msa0930990 | Msa1355020 | 0.905258 | 5.189377e-80 | -8.615850e-47 |
| Msa0930990 | Msa1380540 | 0.876928 | 9.447574e-69 | -8.615850e-47 |
| Msa0930990 | Msa1390410 | 0.811102 | 8.282143e-51 | -8.615850e-47 |
| Msa0930990 | Msa1393600 | 0.802544 | 5.333730e-49 | -8.615850e-47 |
| Msa0930990 | Msa1394090 | 0.889037 | 3.465383e-73 | -8.615850e-47 |
| Msa0930990 | Msa1394100 | 0.895049 | 1.386247e-75 | -8.615850e-47 |
| Msa0930990 | Msa1394280 | 0.896849 | 2.485024e-76 | -8.615850e-47 |
| Msa0930990 | Msa1405190 | 0.818520 | 1.877799e-52 | -8.615850e-47 |
| Msa0930990 | Msa1415120 | 0.826730 | 2.311096e-54 | -8.615850e-47 |
| Msa0930990 | Msa1433650 | 0.806805 | 6.880620e-50 | -8.615850e-47 |
| Msa0930990 | Msa1439160 | 0.803340 | 3.653316e-49 | -8.615850e-47 |
| Msa0930990 | Msa1454940 | 0.800902 | 1.159167e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930990 | MtrunA17_Chr4g0015801 | 81.513 | 119 | 11 | 2 | 69 | 176 | 4 | 122 | 4.57e-49 | 156 |
| Msa0930990 | MtrunA17_CPg0492771 | 81.513 | 119 | 11 | 2 | 69 | 176 | 4 | 122 | 4.57e-49 | 156 |
| Msa0930990 | MtrunA17_Chr6g0466591 | 88.889 | 90 | 6 | 1 | 68 | 153 | 1 | 90 | 1.37e-47 | 152 |
| Msa0930990 | MtrunA17_Chr4g0016891 | 87.640 | 89 | 9 | 1 | 69 | 155 | 4 | 92 | 1.72e-44 | 144 |
| Msa0930990 | MtrunA17_Chr7g0237831 | 97.183 | 71 | 2 | 0 | 70 | 140 | 5 | 75 | 2.39e-40 | 132 |
| Msa0930990 | MtrunA17_Chr6g0465781 | 96.610 | 59 | 2 | 0 | 68 | 126 | 1 | 59 | 4.69e-33 | 113 |
| Msa0930990 | MtrunA17_Chr4g0016881 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 2.08e-13 | 62.4 |
| Msa0930990 | MtrunA17_CPg0492791 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 2.29e-13 | 62.4 |
| Msa0930990 | MtrunA17_Chr4g0015781 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 2.29e-13 | 62.4 |
| Msa0930990 | MtrunA17_Chr4g0028951 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 2.29e-13 | 62.4 |
| Msa0930990 | MtrunA17_Chr8g0355611 | 100.000 | 30 | 0 | 0 | 15 | 44 | 1 | 30 | 2.29e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930990 | ATCG00650.1 | 70.370 | 108 | 25 | 1 | 68 | 175 | 1 | 101 | 1.97e-43 | 141 |
| Msa0930990 | ATCG00630.1 | 90.000 | 30 | 3 | 0 | 15 | 44 | 1 | 30 | 2.46e-11 | 57.4 |
Find 19 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | 6_2:-80142857 | Msa0930990:CDS |
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 6_2:-80143537 | Msa0930990:CDS |
| TACAACGCAACATCCTCAAT+AGG | 0.435840 | 6_2:+80142073 | None:intergenic |
| GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | 6_2:-80142856 | Msa0930990:CDS |
| AGTTTGTCCCCGATCCAATC+GGG | 0.455483 | 6_2:-80142448 | Msa0930990:CDS |
| GAGTTTGTCCCCGATCCAAT+CGG | 0.465376 | 6_2:-80142449 | Msa0930990:CDS |
| CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | 6_2:-80143520 | Msa0930990:CDS |
| AAAGGTGACGAATTAACAAA+AGG | 0.521079 | 6_2:+80142274 | None:intergenic |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 6_2:-80143530 | Msa0930990:CDS |
| AAAATACGACAATCCTATTG+AGG | 0.528765 | 6_2:-80142086 | Msa0930990:CDS |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 6_2:-80143551 | Msa0930990:CDS |
| GAGTCGCTTAGATTTATCCA+TGG | 0.585856 | 6_2:+80142501 | None:intergenic |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 6_2:+80143535 | None:intergenic |
| GTATAGGAATAAACAAACCA+TGG | 0.629025 | 6_2:-80142518 | Msa0930990:CDS |
| TATCGACTTATTAGTCAACA+AGG | 0.637963 | 6_2:-80142391 | Msa0930990:CDS |
| GTTTGTCCCCGATCCAATCG+GGG | 0.647747 | 6_2:-80142447 | Msa0930990:CDS |
| TTTGTCCCCGATCCAATCGG+GGG | 0.661952 | 6_2:-80142446 | Msa0930990:CDS |
| AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | 6_2:-80142855 | Msa0930990:intron |
| ATCGAAACTCAAATTCAATG+CGG | 0.701196 | 6_2:-80142138 | Msa0930990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATAAAATTAAT+TGG | - | chr6_2:80142617-80142636 | Msa0930990:intron | 0.0% |
| !! | AAAATTAATATAAAATTAAT+TGG | - | chr6_2:80142617-80142636 | Msa0930990:intron | 0.0% |
| !!! | TTTTTTTCATTATTAACAAA+AGG | + | chr6_2:80143429-80143448 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATTATTAACAAA+AGG | + | chr6_2:80143429-80143448 | None:intergenic | 10.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr6_2:80142234-80142253 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr6_2:80142356-80142375 | Msa0930990:CDS | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr6_2:80142450-80142469 | None:intergenic | 15.0% |
| !!! | AATCCTTTTTTTATAAGAAA+TGG | - | chr6_2:80143133-80143152 | Msa0930990:intron | 15.0% |
| !!! | ATCCTTTTTTTATAAGAAAT+GGG | - | chr6_2:80143134-80143153 | Msa0930990:intron | 15.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr6_2:80142234-80142253 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr6_2:80142356-80142375 | Msa0930990:CDS | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr6_2:80142450-80142469 | None:intergenic | 15.0% |
| !!! | AATCCTTTTTTTATAAGAAA+TGG | - | chr6_2:80143133-80143152 | Msa0930990:intron | 15.0% |
| !!! | ATCCTTTTTTTATAAGAAAT+GGG | - | chr6_2:80143134-80143153 | Msa0930990:intron | 15.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr6_2:80142081-80142100 | Msa0930990:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr6_2:80142233-80142252 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr6_2:80142235-80142254 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr6_2:80142233-80142252 | Msa0930990:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr6_2:80142288-80142307 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr6_2:80142359-80142378 | Msa0930990:CDS | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr6_2:80142365-80142384 | Msa0930990:CDS | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr6_2:80142481-80142500 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr6_2:80142781-80142800 | Msa0930990:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr6_2:80142817-80142836 | Msa0930990:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | - | chr6_2:80142951-80142970 | Msa0930990:intron | 20.0% |
| !! | ATCCCATTTCTTATAAAAAA+AGG | + | chr6_2:80143139-80143158 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | - | chr6_2:80143142-80143161 | Msa0930990:intron | 20.0% |
| !!! | AATTAATCGTTGTTGTTTTA+AGG | + | chr6_2:80143349-80143368 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGAACAGTAGT+AGG | + | chr6_2:80143486-80143505 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr6_2:80142081-80142100 | Msa0930990:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr6_2:80142233-80142252 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr6_2:80142235-80142254 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr6_2:80142233-80142252 | Msa0930990:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr6_2:80142288-80142307 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr6_2:80142359-80142378 | Msa0930990:CDS | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr6_2:80142365-80142384 | Msa0930990:CDS | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr6_2:80142481-80142500 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr6_2:80142781-80142800 | Msa0930990:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr6_2:80142817-80142836 | Msa0930990:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | - | chr6_2:80142951-80142970 | Msa0930990:intron | 20.0% |
| !! | ATCCCATTTCTTATAAAAAA+AGG | + | chr6_2:80143139-80143158 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | - | chr6_2:80143142-80143161 | Msa0930990:intron | 20.0% |
| !!! | AATTAATCGTTGTTGTTTTA+AGG | + | chr6_2:80143349-80143368 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGAACAGTAGT+AGG | + | chr6_2:80143486-80143505 | None:intergenic | 20.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr6_2:80142305-80142324 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | chr6_2:80142306-80142325 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr6_2:80142485-80142504 | Msa0930990:CDS | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr6_2:80142486-80142505 | Msa0930990:CDS | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | chr6_2:80142735-80142754 | Msa0930990:intron | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | + | chr6_2:80142992-80143011 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | + | chr6_2:80142993-80143012 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr6_2:80142305-80142324 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | chr6_2:80142306-80142325 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr6_2:80142485-80142504 | Msa0930990:CDS | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr6_2:80142486-80142505 | Msa0930990:CDS | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | chr6_2:80142735-80142754 | Msa0930990:intron | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | + | chr6_2:80142992-80143011 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | + | chr6_2:80142993-80143012 | None:intergenic | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr6_2:80142084-80142103 | Msa0930990:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr6_2:80142122-80142141 | Msa0930990:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | - | chr6_2:80142194-80142213 | Msa0930990:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr6_2:80142238-80142257 | Msa0930990:CDS | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | chr6_2:80142391-80142410 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr6_2:80142465-80142484 | Msa0930990:CDS | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | chr6_2:80142738-80142757 | Msa0930990:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr6_2:80142771-80142790 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr6_2:80142825-80142844 | Msa0930990:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr6_2:80142826-80142845 | Msa0930990:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr6_2:80142827-80142846 | Msa0930990:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr6_2:80142923-80142942 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr6_2:80142924-80142943 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | - | chr6_2:80143164-80143183 | Msa0930990:intron | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | - | chr6_2:80143211-80143230 | Msa0930990:intron | 30.0% |
| !! | TATCGACTTATTAGTCAACA+AGG | - | chr6_2:80143291-80143310 | Msa0930990:intron | 30.0% |
| AAAGGTGACGAATTAACAAA+AGG | + | chr6_2:80143411-80143430 | None:intergenic | 30.0% | |
| ATCGAAACTCAAATTCAATG+CGG | - | chr6_2:80143544-80143563 | Msa0930990:CDS | 30.0% | |
| AAAATACGACAATCCTATTG+AGG | - | chr6_2:80143596-80143615 | Msa0930990:CDS | 30.0% | |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr6_2:80142084-80142103 | Msa0930990:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr6_2:80142122-80142141 | Msa0930990:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | - | chr6_2:80142194-80142213 | Msa0930990:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr6_2:80142238-80142257 | Msa0930990:CDS | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | chr6_2:80142391-80142410 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr6_2:80142465-80142484 | Msa0930990:CDS | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | chr6_2:80142738-80142757 | Msa0930990:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr6_2:80142771-80142790 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr6_2:80142825-80142844 | Msa0930990:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr6_2:80142826-80142845 | Msa0930990:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr6_2:80142827-80142846 | Msa0930990:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr6_2:80142923-80142942 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr6_2:80142924-80142943 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | - | chr6_2:80143164-80143183 | Msa0930990:intron | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | - | chr6_2:80143211-80143230 | Msa0930990:intron | 30.0% |
| !! | TATCGACTTATTAGTCAACA+AGG | - | chr6_2:80143291-80143310 | Msa0930990:intron | 30.0% |
| AAAGGTGACGAATTAACAAA+AGG | + | chr6_2:80143411-80143430 | None:intergenic | 30.0% | |
| ATCGAAACTCAAATTCAATG+CGG | - | chr6_2:80143544-80143563 | Msa0930990:CDS | 30.0% | |
| AAAATACGACAATCCTATTG+AGG | - | chr6_2:80143596-80143615 | Msa0930990:CDS | 30.0% | |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr6_2:80142394-80142413 | Msa0930990:CDS | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr6_2:80142414-80142433 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr6_2:80142415-80142434 | None:intergenic | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr6_2:80142696-80142715 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | chr6_2:80142745-80142764 | Msa0930990:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr6_2:80142893-80142912 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | - | chr6_2:80143148-80143167 | Msa0930990:intron | 35.0% |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr6_2:80142394-80142413 | Msa0930990:CDS | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr6_2:80142414-80142433 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr6_2:80142415-80142434 | None:intergenic | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr6_2:80142696-80142715 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | chr6_2:80142745-80142764 | Msa0930990:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr6_2:80142893-80142912 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | - | chr6_2:80143148-80143167 | Msa0930990:intron | 35.0% |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr6_2:80142381-80142400 | Msa0930990:CDS | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr6_2:80142403-80142422 | Msa0930990:CDS | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr6_2:80142880-80142899 | Msa0930990:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | - | chr6_2:80142974-80142993 | Msa0930990:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | + | chr6_2:80143184-80143203 | None:intergenic | 40.0% | |
| TACAACGCAACATCCTCAAT+AGG | + | chr6_2:80143612-80143631 | None:intergenic | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr6_2:80142381-80142400 | Msa0930990:CDS | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr6_2:80142403-80142422 | Msa0930990:CDS | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr6_2:80142880-80142899 | Msa0930990:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | - | chr6_2:80142974-80142993 | Msa0930990:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | + | chr6_2:80143184-80143203 | None:intergenic | 40.0% | |
| TACAACGCAACATCCTCAAT+AGG | + | chr6_2:80143612-80143631 | None:intergenic | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr6_2:80142150-80142169 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | chr6_2:80142216-80142235 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | chr6_2:80142243-80142262 | Msa0930990:CDS | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | chr6_2:80142244-80142263 | Msa0930990:CDS | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | + | chr6_2:80143251-80143270 | None:intergenic | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr6_2:80142150-80142169 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | chr6_2:80142216-80142235 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | chr6_2:80142243-80142262 | Msa0930990:CDS | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | chr6_2:80142244-80142263 | Msa0930990:CDS | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | + | chr6_2:80143251-80143270 | None:intergenic | 45.0% | |
| !!! | TTATTTATATTTGTTATATA+AGG | + | chr6_2:80143065-80143084 | None:intergenic | 5.0% |
| !!! | TTATTTATATTTGTTATATA+AGG | + | chr6_2:80143065-80143084 | None:intergenic | 5.0% |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr6_2:80142131-80142150 | Msa0930990:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr6_2:80142145-80142164 | Msa0930990:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr6_2:80142152-80142171 | Msa0930990:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | chr6_2:80142215-80142234 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | chr6_2:80142245-80142264 | Msa0930990:CDS | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr6_2:80142752-80142771 | Msa0930990:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | - | chr6_2:80142977-80142996 | Msa0930990:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | - | chr6_2:80143233-80143252 | Msa0930990:intron | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | - | chr6_2:80143234-80143253 | Msa0930990:intron | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | + | chr6_2:80143246-80143265 | None:intergenic | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr6_2:80142131-80142150 | Msa0930990:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr6_2:80142145-80142164 | Msa0930990:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr6_2:80142152-80142171 | Msa0930990:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | chr6_2:80142215-80142234 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | chr6_2:80142245-80142264 | Msa0930990:CDS | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr6_2:80142752-80142771 | Msa0930990:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | - | chr6_2:80142977-80142996 | Msa0930990:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | - | chr6_2:80143233-80143252 | Msa0930990:intron | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | - | chr6_2:80143234-80143253 | Msa0930990:intron | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | + | chr6_2:80143246-80143265 | None:intergenic | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr6_2:80142162-80142181 | Msa0930990:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | chr6_2:80142754-80142773 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | chr6_2:80142751-80142770 | Msa0930990:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | - | chr6_2:80143235-80143254 | Msa0930990:intron | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | - | chr6_2:80143236-80143255 | Msa0930990:intron | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | + | chr6_2:80143245-80143264 | None:intergenic | 55.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr6_2:80142162-80142181 | Msa0930990:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | chr6_2:80142754-80142773 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | chr6_2:80142751-80142770 | Msa0930990:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | - | chr6_2:80143235-80143254 | Msa0930990:intron | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | - | chr6_2:80143236-80143255 | Msa0930990:intron | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | + | chr6_2:80143245-80143264 | None:intergenic | 55.0% | |
| TCGATCCCCCGATTGGATCG+GGG | + | chr6_2:80143244-80143263 | None:intergenic | 60.0% | |
| TCGATCCCCCGATTGGATCG+GGG | + | chr6_2:80143244-80143263 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 80142072 | 80143632 | 80142072 | ID=Msa0930990;Name=Msa0930990 |
| chr6_2 | mRNA | 80142072 | 80143632 | 80142072 | ID=Msa0930990-mRNA-1;Parent=Msa0930990;Name=Msa0930990-mRNA-1;_AED=0.39;_eAED=0.44;_QI=0|0|0|1|0|0|3|0|216 |
| chr6_2 | exon | 80143500 | 80143632 | 80143500 | ID=Msa0930990-mRNA-1:exon:14019;Parent=Msa0930990-mRNA-1 |
| chr6_2 | exon | 80142856 | 80142890 | 80142856 | ID=Msa0930990-mRNA-1:exon:14018;Parent=Msa0930990-mRNA-1 |
| chr6_2 | exon | 80142072 | 80142554 | 80142072 | ID=Msa0930990-mRNA-1:exon:14017;Parent=Msa0930990-mRNA-1 |
| chr6_2 | CDS | 80143500 | 80143632 | 80143500 | ID=Msa0930990-mRNA-1:cds;Parent=Msa0930990-mRNA-1 |
| chr6_2 | CDS | 80142856 | 80142890 | 80142856 | ID=Msa0930990-mRNA-1:cds;Parent=Msa0930990-mRNA-1 |
| chr6_2 | CDS | 80142072 | 80142554 | 80142072 | ID=Msa0930990-mRNA-1:cds;Parent=Msa0930990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
