Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802530 | XP_003612708.1 | 96.098 | 410 | 14 | 1 | 1 | 408 | 1 | 410 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802530 | sp|Q9LVJ0|UVB31_ARATH | 46.407 | 334 | 167 | 6 | 80 | 406 | 91 | 419 | 3.48e-94 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802530 | G7K9K7 | 96.098 | 410 | 14 | 1 | 1 | 408 | 1 | 410 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041780 | Msa0802530 | 0.813205 | 2.880181e-51 | -8.615850e-47 |
| Msa0044320 | Msa0802530 | 0.807778 | 4.281235e-50 | -8.615850e-47 |
| Msa0604640 | Msa0802530 | 0.823426 | 1.393749e-53 | -8.615850e-47 |
| Msa0614390 | Msa0802530 | 0.800993 | 1.110423e-48 | -8.615850e-47 |
| Msa0748050 | Msa0802530 | 0.813644 | 2.306107e-51 | -8.615850e-47 |
| Msa0802530 | Msa0813630 | 0.802383 | 5.757257e-49 | -8.615850e-47 |
| Msa0802530 | Msa0822370 | 0.816550 | 5.218580e-52 | -8.615850e-47 |
| Msa0802530 | Msa0840890 | 0.973422 | 2.116297e-136 | -8.615850e-47 |
| Msa0802530 | Msa0861480 | 0.804341 | 2.263513e-49 | -8.615850e-47 |
| Msa0802530 | Msa0861560 | 0.808851 | 2.528049e-50 | -8.615850e-47 |
| Msa0802530 | Msa0861800 | 0.817443 | 3.289123e-52 | -8.615850e-47 |
| Msa0802530 | Msa1014120 | 0.808192 | 3.493852e-50 | -8.615850e-47 |
| Msa0802530 | Msa1030430 | 0.824044 | 9.991660e-54 | -8.615850e-47 |
| Msa0802530 | Msa1036020 | -0.808095 | 3.664806e-50 | -8.615850e-47 |
| Msa0802530 | Msa1043020 | 0.803084 | 4.126546e-49 | -8.615850e-47 |
| Msa0802530 | Msa1052030 | 0.808800 | 2.591608e-50 | -8.615850e-47 |
| Msa0802530 | Msa1061760 | -0.810079 | 1.377813e-50 | -8.615850e-47 |
| Msa0802530 | Msa1069440 | 0.884549 | 1.743745e-71 | -8.615850e-47 |
| Msa0802530 | Msa1071310 | 0.800405 | 1.463831e-48 | -8.615850e-47 |
| Msa0802530 | Msa1096510 | 0.814375 | 1.590718e-51 | -8.615850e-47 |
| Msa0802530 | Msa1096520 | 0.801925 | 7.154523e-49 | -8.615850e-47 |
| Msa0802530 | Msa1101300 | 0.804564 | 2.033654e-49 | -8.615850e-47 |
| Msa0802530 | Msa1113280 | 0.814889 | 1.224398e-51 | -8.615850e-47 |
| Msa0802530 | Msa1130730 | 0.814846 | 1.251459e-51 | -8.615850e-47 |
| Msa0802530 | Msa1150860 | -0.815449 | 9.194251e-52 | -8.615850e-47 |
| Msa0802530 | Msa1157310 | 0.877776 | 4.790758e-69 | -8.615850e-47 |
| Msa0802530 | Msa1191390 | 0.801209 | 1.002944e-48 | -8.615850e-47 |
| Msa0802530 | Msa1211300 | 0.802255 | 6.120034e-49 | -8.615850e-47 |
| Msa0802530 | Msa1299370 | 0.817673 | 2.919265e-52 | -8.615850e-47 |
| Msa0802530 | Msa1413900 | 0.810313 | 1.226411e-50 | -8.615850e-47 |
| Msa0802530 | Msa1431870 | 0.810732 | 9.959650e-51 | -8.615850e-47 |
| Msa0802530 | Msa1452200 | 0.832804 | 7.667976e-56 | -8.615850e-47 |
| Msa0212730 | Msa0802530 | 0.807601 | 4.666861e-50 | -8.615850e-47 |
| Msa0378670 | Msa0802530 | 0.814352 | 1.609536e-51 | -8.615850e-47 |
| Msa0378700 | Msa0802530 | 0.805338 | 1.400820e-49 | -8.615850e-47 |
| Msa0408160 | Msa0802530 | 0.808129 | 3.604442e-50 | -8.615850e-47 |
| Msa0421390 | Msa0802530 | 0.800098 | 1.690223e-48 | -8.615850e-47 |
| Msa0246300 | Msa0802530 | 0.811447 | 6.970016e-51 | -8.615850e-47 |
| Msa0267710 | Msa0802530 | -0.800532 | 1.379028e-48 | -8.615850e-47 |
| Msa0273000 | Msa0802530 | 0.811188 | 7.931445e-51 | -8.615850e-47 |
| Msa0311330 | Msa0802530 | 0.829802 | 4.197363e-55 | -8.615850e-47 |
| Msa0549330 | Msa0802530 | 0.806951 | 6.409462e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802530 | MtrunA17_Chr5g0410131 | 96.098 | 410 | 14 | 1 | 1 | 408 | 1 | 410 | 0.0 | 805 |
| Msa0802530 | MtrunA17_Chr8g0393251 | 48.214 | 336 | 157 | 7 | 83 | 406 | 89 | 419 | 9.25e-103 | 311 |
| Msa0802530 | MtrunA17_Chr6g0479321 | 43.560 | 427 | 209 | 11 | 1 | 406 | 1 | 416 | 1.80e-102 | 310 |
| Msa0802530 | MtrunA17_Chr8g0339211 | 32.584 | 356 | 201 | 10 | 67 | 403 | 32 | 367 | 1.51e-51 | 177 |
| Msa0802530 | MtrunA17_Chr7g0234851 | 29.278 | 263 | 130 | 8 | 155 | 404 | 1 | 220 | 1.12e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802530 | AT1G32160.1 | 60.054 | 368 | 134 | 6 | 46 | 406 | 43 | 404 | 1.20e-151 | 435 |
| Msa0802530 | AT1G48450.1 | 43.956 | 364 | 175 | 6 | 64 | 406 | 66 | 421 | 1.02e-97 | 298 |
| Msa0802530 | AT3G17800.1 | 46.407 | 334 | 167 | 6 | 80 | 406 | 91 | 419 | 3.54e-95 | 291 |
| Msa0802530 | AT3G17800.2 | 46.407 | 334 | 167 | 6 | 80 | 406 | 97 | 425 | 4.62e-95 | 291 |
| Msa0802530 | AT1G48450.3 | 50.000 | 206 | 97 | 4 | 64 | 264 | 66 | 270 | 8.68e-63 | 205 |
| Msa0802530 | AT1G48450.2 | 50.000 | 206 | 97 | 4 | 64 | 264 | 66 | 270 | 1.41e-62 | 205 |
| Msa0802530 | AT3G07310.1 | 34.615 | 338 | 164 | 7 | 81 | 405 | 60 | 353 | 5.44e-51 | 176 |
| Msa0802530 | AT3G07310.2 | 35.231 | 281 | 128 | 6 | 135 | 405 | 13 | 249 | 1.57e-45 | 158 |
| Msa0802530 | AT5G48590.1 | 32.092 | 349 | 173 | 7 | 61 | 403 | 38 | 328 | 3.39e-45 | 159 |
Find 100 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTTGACTATGCTTGTTT+TGG | 0.227356 | 5_3:+16956721 | Msa0802530:CDS |
| CACTTGTTCATTAGGATCTA+AGG | 0.237940 | 5_3:-16956123 | None:intergenic |
| GGGGACATTTCCACAGGATT+TGG | 0.250135 | 5_3:+16956373 | Msa0802530:CDS |
| ATTGCTATACTTACTTATAA+AGG | 0.273699 | 5_3:-16954988 | None:intergenic |
| ATAGCAACAATGCAAGTTTC+AGG | 0.278776 | 5_3:+16952551 | Msa0802530:exon |
| GACCAACTGGTGACTCAAAT+TGG | 0.287829 | 5_3:-16954838 | None:intergenic |
| CATGAATCCACTTGTTCATT+AGG | 0.290802 | 5_3:-16956131 | None:intergenic |
| AAGCAAACTCAGGCCATCTT+TGG | 0.319554 | 5_3:+16956623 | Msa0802530:CDS |
| TCTAACTTAAACTCTTGATT+TGG | 0.322643 | 5_3:-16956155 | None:intergenic |
| TCGCCAGAGAGGCGGATATC+AGG | 0.325939 | 5_3:-16956650 | None:intergenic |
| GGGATTCAGATTCCTTGATT+AGG | 0.335726 | 5_3:+16956444 | Msa0802530:CDS |
| TACTACATTTCTCATGTTTG+TGG | 0.337781 | 5_3:-16956950 | None:intergenic |
| AATCAATGATATAGCTTCCT+TGG | 0.338228 | 5_3:-16956597 | None:intergenic |
| TCTGAATCCCAGAGCTTGTT+TGG | 0.340795 | 5_3:-16956431 | None:intergenic |
| ACATGGAAATGGCGGAATTC+CGG | 0.346199 | 5_3:-16952629 | None:intergenic |
| GTTCTTTCACTTACCTTCTC+AGG | 0.352943 | 5_3:+16956701 | Msa0802530:CDS |
| TAGAATTGCAATCAATTCAT+TGG | 0.357363 | 5_3:-16956887 | None:intergenic |
| TTGCTATACTTACTTATAAA+GGG | 0.366948 | 5_3:-16954987 | None:intergenic |
| TCTTTCCACTGGATTTCTTA+AGG | 0.371963 | 5_3:+16952670 | Msa0802530:CDS |
| GGGACATTTCCACAGGATTT+GGG | 0.374462 | 5_3:+16956374 | Msa0802530:CDS |
| AATTGATTGCAATTCTAAAC+AGG | 0.375403 | 5_3:+16956893 | Msa0802530:three_prime_UTR |
| TCATAATAACCTTCGTCGTC+AGG | 0.392214 | 5_3:-16956473 | None:intergenic |
| CTAATGAACAAGTGGATTCA+TGG | 0.394318 | 5_3:+16956132 | Msa0802530:CDS |
| TGCTAATCTGAATAATTGTC+TGG | 0.396420 | 5_3:-16956259 | None:intergenic |
| TGCTGCAATCAGCGACGTTA+TGG | 0.404859 | 5_3:+16952574 | Msa0802530:CDS |
| AAATGTATGTACAGTGCATT+AGG | 0.415561 | 5_3:+16956972 | Msa0802530:three_prime_UTR |
| CAGAGCTTGTTTGGTGGCGA+TGG | 0.425821 | 5_3:-16956422 | None:intergenic |
| CGACGAAGGTTATTATGAAA+TGG | 0.432815 | 5_3:+16956478 | Msa0802530:CDS |
| CATCGCCACCAAACAAGCTC+TGG | 0.439506 | 5_3:+16956423 | Msa0802530:CDS |
| TTCATCCTTGCTCCGGTCAC+CGG | 0.442163 | 5_3:+16952610 | Msa0802530:CDS |
| TGTTCCAACAGCTGACCAAC+TGG | 0.446698 | 5_3:-16954851 | None:intergenic |
| GCTAAGAATGTTCTTTCCAC+TGG | 0.448674 | 5_3:+16952659 | Msa0802530:CDS |
| TTCCATCTTCATCCTTGCTC+CGG | 0.448751 | 5_3:+16952603 | Msa0802530:CDS |
| TGTAGACGATTCTTCTTTGT+GGG | 0.448877 | 5_3:-16954951 | None:intergenic |
| GATAATAATCTTCTCATCAA+TGG | 0.452274 | 5_3:+16957006 | Msa0802530:three_prime_UTR |
| GAAGGAAAAGCGCACAACAC+TGG | 0.457388 | 5_3:+16956025 | Msa0802530:CDS |
| ATGTAGACGATTCTTCTTTG+TGG | 0.457546 | 5_3:-16954952 | None:intergenic |
| ACTGGTGAAGGCAAATCATC+TGG | 0.458702 | 5_3:+16956512 | Msa0802530:CDS |
| AGGCCTGATATCCGCCTCTC+TGG | 0.462587 | 5_3:+16956647 | Msa0802530:CDS |
| GTCTTCTATTTAGCAAGAAA+AGG | 0.464050 | 5_3:-16956803 | None:intergenic |
| TTTAGCAAGAAAAGGATACT+TGG | 0.467013 | 5_3:-16956795 | None:intergenic |
| GGTACTAGGAGAACGGGTTG+TGG | 0.467548 | 5_3:+16956229 | Msa0802530:CDS |
| ATCTCTGGTACTAGGAGAAC+GGG | 0.468587 | 5_3:+16956223 | Msa0802530:CDS |
| GAAATGGATGACATGAATAC+TGG | 0.473449 | 5_3:+16956494 | Msa0802530:CDS |
| TTTCTCTAGCTGCTGATCAA+TGG | 0.480611 | 5_3:-16954909 | None:intergenic |
| TAATGTTTAGCATTGTAAGA+TGG | 0.490910 | 5_3:-16954728 | None:intergenic |
| GATATCCGCCTCTCTGGCGA+TGG | 0.494884 | 5_3:+16956653 | Msa0802530:CDS |
| TCAGATTAGCAAAATCAAGC+TGG | 0.494898 | 5_3:+16956271 | Msa0802530:CDS |
| GTACTAGGAGAACGGGTTGT+GGG | 0.495251 | 5_3:+16956230 | Msa0802530:CDS |
| GATATCAGGCCTTCCAAAGA+TGG | 0.500822 | 5_3:-16956636 | None:intergenic |
| CATTCTTAGCGTCAGAAACA+TGG | 0.501610 | 5_3:-16952646 | None:intergenic |
| TAGCGTCAGAAACATGGAAA+TGG | 0.504783 | 5_3:-16952640 | None:intergenic |
| GTCAGTGGGGACATTTCCAC+AGG | 0.511388 | 5_3:+16956367 | Msa0802530:CDS |
| GATAGCTGAAATTAAAGAGA+AGG | 0.513232 | 5_3:+16956007 | Msa0802530:CDS |
| AGTCACTTATCTCTGGTACT+AGG | 0.518341 | 5_3:+16956215 | Msa0802530:CDS |
| TCAAATTGGAGAGGAGGAGA+AGG | 0.523972 | 5_3:-16954824 | None:intergenic |
| GATACAGAGTCACTTATCTC+TGG | 0.524948 | 5_3:+16956208 | Msa0802530:CDS |
| GTCACCAGTTGGTCAGCTGT+TGG | 0.529662 | 5_3:+16954847 | Msa0802530:CDS |
| TTCTCAAACGGGTTGATGAA+CGG | 0.539715 | 5_3:+16956330 | Msa0802530:CDS |
| GACCGGAGCAAGGATGAAGA+TGG | 0.544286 | 5_3:-16952605 | None:intergenic |
| AAGTGAAAGAACTTCATCAT+TGG | 0.547625 | 5_3:-16956690 | None:intergenic |
| TTATGTGACGCAGTTGGATG+CGG | 0.547849 | 5_3:+16956544 | Msa0802530:CDS |
| TTTCAACTTGAGAGGTCAGT+GGG | 0.553640 | 5_3:+16956353 | Msa0802530:CDS |
| GTCAGGATAGATCCTAATCA+AGG | 0.555455 | 5_3:-16956456 | None:intergenic |
| AATGGCGGAATTCCGGTGAC+CGG | 0.555817 | 5_3:-16952622 | None:intergenic |
| CTTAGATCCTAATGAACAAG+TGG | 0.559493 | 5_3:+16956124 | Msa0802530:CDS |
| TACGCTGCTTCAATAATGTA+CGG | 0.561722 | 5_3:+16956302 | Msa0802530:CDS |
| CCCTCTACCTCGAAAACTGT+AGG | 0.561938 | 5_3:-16954759 | None:intergenic |
| CCTCTACCTCGAAAACTGTA+GGG | 0.565780 | 5_3:-16954758 | None:intergenic |
| GAATCCCAGAGCTTGTTTGG+TGG | 0.566609 | 5_3:-16956428 | None:intergenic |
| CTCCAATTTGAGTCACCAGT+TGG | 0.568776 | 5_3:+16954836 | Msa0802530:CDS |
| CAGATTAGCAAAATCAAGCT+GGG | 0.569243 | 5_3:+16956272 | Msa0802530:CDS |
| AAACTCAGGCCATCTTTGGA+AGG | 0.573455 | 5_3:+16956627 | Msa0802530:CDS |
| ACTTGCTACCGTACGCTCCA+AGG | 0.573497 | 5_3:+16956580 | Msa0802530:CDS |
| TATAGCTTCCTTGGAGCGTA+CGG | 0.574158 | 5_3:-16956588 | None:intergenic |
| ATTGATTGAAAAGCAAACTC+AGG | 0.576005 | 5_3:+16956613 | Msa0802530:CDS |
| AGAAGCTGTTCATTCTTCAG+AGG | 0.579126 | 5_3:+16956175 | Msa0802530:CDS |
| ATCGCCACCAAACAAGCTCT+GGG | 0.579787 | 5_3:+16956424 | Msa0802530:CDS |
| GAATTCCGGTGACCGGAGCA+AGG | 0.580866 | 5_3:-16952615 | None:intergenic |
| AGTGCATTAGGTAGAACTAC+AGG | 0.582597 | 5_3:+16956984 | Msa0802530:three_prime_UTR |
| AAGCATAGTCAAGCCTGAGA+AGG | 0.589966 | 5_3:-16956714 | None:intergenic |
| TGCAATCAGCGACGTTATGG+TGG | 0.591974 | 5_3:+16952577 | Msa0802530:CDS |
| TGTTTAGCATTGTAAGATGG+AGG | 0.598867 | 5_3:-16954725 | None:intergenic |
| TATCTCTGGTACTAGGAGAA+CGG | 0.602653 | 5_3:+16956222 | Msa0802530:CDS |
| TCGAACCATCGCCAGAGAGG+CGG | 0.606436 | 5_3:-16956658 | None:intergenic |
| ATGAACGGTTTCAACTTGAG+AGG | 0.607201 | 5_3:+16956345 | Msa0802530:CDS |
| ATCTGAATAATTGTCTGGAG+AGG | 0.609906 | 5_3:-16956254 | None:intergenic |
| GGTGACTCAAATTGGAGAGG+AGG | 0.611408 | 5_3:-16954830 | None:intergenic |
| CGTCAGAAACATGGAAATGG+CGG | 0.625015 | 5_3:-16952637 | None:intergenic |
| GCTTACCTTAAGAAATCCAG+TGG | 0.630386 | 5_3:-16952675 | None:intergenic |
| TGTGACGCAGTTGGATGCGG+AGG | 0.632757 | 5_3:+16956547 | Msa0802530:CDS |
| GTTTCAACTTGAGAGGTCAG+TGG | 0.638572 | 5_3:+16956352 | Msa0802530:CDS |
| GATGACATGAATACTGGTGA+AGG | 0.657750 | 5_3:+16956500 | Msa0802530:CDS |
| GAGAGATTATGTGACGCAGT+TGG | 0.659539 | 5_3:+16956538 | Msa0802530:CDS |
| CAATCGAACCATCGCCAGAG+AGG | 0.664592 | 5_3:-16956661 | None:intergenic |
| AGGATCTATCCTGACGACGA+AGG | 0.680431 | 5_3:+16956464 | Msa0802530:CDS |
| ACTGGTGACTCAAATTGGAG+AGG | 0.690306 | 5_3:-16954833 | None:intergenic |
| TGTCGTGACTCTGAAGAACA+CGG | 0.706162 | 5_3:-16952390 | None:intergenic |
| TTCAACTTGAGAGGTCAGTG+GGG | 0.739731 | 5_3:+16956354 | Msa0802530:CDS |
| AGAATCGTCTACATCATACG+AGG | 0.755987 | 5_3:+16954961 | Msa0802530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTTATATAATTA+AGG | - | chr5_3:16952989-16953008 | None:intergenic | 0.0% |
| !! | ATAAAATTAAAATGTATTCT+TGG | + | chr5_3:16952996-16953015 | Msa0802530:intron | 10.0% |
| !! | TCATGTTAATTTAATTAATT+AGG | + | chr5_3:16955836-16955855 | Msa0802530:intron | 10.0% |
| !! | TTATTTGTTTATTTAGTTAT+TGG | + | chr5_3:16955941-16955960 | Msa0802530:intron | 10.0% |
| !! | TGTTTATTTGTCAAATTAAA+TGG | + | chr5_3:16953092-16953111 | Msa0802530:intron | 15.0% |
| !!! | TTTGTTTTTATCAAATTACA+TGG | + | chr5_3:16953428-16953447 | Msa0802530:intron | 15.0% |
| !! | TGATTTAATTCATGTATTTA+AGG | + | chr5_3:16953469-16953488 | Msa0802530:intron | 15.0% |
| !! | TACAAAATATTATGAAATAG+CGG | + | chr5_3:16953642-16953661 | Msa0802530:intron | 15.0% |
| !! | TACAAAATATTATGAAATAG+TGG | + | chr5_3:16953642-16953661 | Msa0802530:intron | 15.0% |
| !!! | AAAACAATATTTAAGGTTAA+GGG | - | chr5_3:16953883-16953902 | None:intergenic | 15.0% |
| !! | TACAAACAAAACAATATTTA+AGG | - | chr5_3:16953890-16953909 | None:intergenic | 15.0% |
| !! | CTACTAATTACAATTAATAA+GGG | - | chr5_3:16954108-16954127 | None:intergenic | 15.0% |
| !! | TCTACTAATTACAATTAATA+AGG | - | chr5_3:16954109-16954128 | None:intergenic | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+TGG | + | chr5_3:16954151-16954170 | Msa0802530:intron | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAA+TGG | + | chr5_3:16954217-16954236 | Msa0802530:intron | 15.0% |
| !!! | TCTTTTTAAATCTGAATATT+AGG | + | chr5_3:16955982-16956001 | Msa0802530:intron | 15.0% |
| !! | AATAATAATCAAAGAAAGTG+AGG | - | chr5_3:16952480-16952499 | None:intergenic | 20.0% |
| !!! | GTTAATTATATTGATTCACA+AGG | + | chr5_3:16953184-16953203 | Msa0802530:intron | 20.0% |
| !! | AATGTTAATTATATTTCCTG+AGG | + | chr5_3:16953522-16953541 | Msa0802530:intron | 20.0% |
| !!! | CAAAACAATATTTAAGGTTA+AGG | - | chr5_3:16953884-16953903 | None:intergenic | 20.0% |
| !!! | AATTGTTTTTATGTACCTTT+CGG | + | chr5_3:16953921-16953940 | Msa0802530:intron | 20.0% |
| !! | AAATGACTATTATTTAGAGA+CGG | - | chr5_3:16954007-16954026 | None:intergenic | 20.0% |
| !! | CTCTAAATAATAGTCATTTA+AGG | + | chr5_3:16954008-16954027 | Msa0802530:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTCAA+TGG | + | chr5_3:16954056-16954075 | Msa0802530:intron | 20.0% |
| !!! | TAATAAGGGTATTTTAGTAA+AGG | - | chr5_3:16954094-16954113 | None:intergenic | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | + | chr5_3:16954139-16954158 | Msa0802530:intron | 20.0% |
| !! | GGATGAAATTCAATAAATAA+GGG | + | chr5_3:16954140-16954159 | Msa0802530:intron | 20.0% |
| !! | AATAATAATAAATGCTGCAT+TGG | + | chr5_3:16954176-16954195 | Msa0802530:intron | 20.0% |
| !!! | AAGAGACAATTATTTTGAAA+CGG | + | chr5_3:16954242-16954261 | Msa0802530:intron | 20.0% |
| !!! | AAACTGTTTTTTGCTTTTTT+TGG | + | chr5_3:16954520-16954539 | Msa0802530:intron | 20.0% |
| !! | TTGCTATACTTACTTATAAA+GGG | - | chr5_3:16954990-16955009 | None:intergenic | 20.0% |
| !! | ATTGCTATACTTACTTATAA+AGG | - | chr5_3:16954991-16955010 | None:intergenic | 20.0% |
| !! | AGGAAAACTTAAAAAATCAA+AGG | + | chr5_3:16955053-16955072 | Msa0802530:intron | 20.0% |
| !! | GGAAAACTTAAAAAATCAAA+GGG | + | chr5_3:16955054-16955073 | Msa0802530:intron | 20.0% |
| !!! | TGATTTTTTTCTATTGTTCT+AGG | + | chr5_3:16955131-16955150 | Msa0802530:intron | 20.0% |
| !! | AAGAAAGAAAAAAATCACAA+AGG | - | chr5_3:16955261-16955280 | None:intergenic | 20.0% |
| !! | TTCTTACTGATATACATAAA+TGG | + | chr5_3:16955301-16955320 | Msa0802530:intron | 20.0% |
| !! | CTAACATTTGAAAGAAAATA+TGG | - | chr5_3:16955602-16955621 | None:intergenic | 20.0% |
| !! | GAATATATTTGCATCAATAT+TGG | + | chr5_3:16955918-16955937 | Msa0802530:intron | 20.0% |
| !!! | TTTTAAATCTGAATATTAGG+AGG | + | chr5_3:16955985-16956004 | Msa0802530:intron | 20.0% |
| !!! | TTCATGTATTTTTGTCGTTT+TGG | + | chr5_3:16953135-16953154 | Msa0802530:intron | 25.0% |
| !!! | GTTGTTAAATAGTGTTTTAG+CGG | + | chr5_3:16953221-16953240 | Msa0802530:intron | 25.0% |
| !! | TTCATGTATTTAAGGTTTCA+TGG | + | chr5_3:16953477-16953496 | Msa0802530:intron | 25.0% |
| ! | TGTACTAATACAATAGAGAA+CGG | - | chr5_3:16953626-16953645 | None:intergenic | 25.0% |
| ! | AATACATGACAATGCTATAA+CGG | - | chr5_3:16953760-16953779 | None:intergenic | 25.0% |
| ! | TGTAGTTATGAGTTATAGAT+AGG | - | chr5_3:16953965-16953984 | None:intergenic | 25.0% |
| ! | AATTAGTAGAGTAGTTAAGT+TGG | + | chr5_3:16954119-16954138 | Msa0802530:intron | 25.0% |
| !! | AAGTATGTAATGGAGAAAAA+GGG | - | chr5_3:16954341-16954360 | None:intergenic | 25.0% |
| !!! | TATTTTGTGGAAGTATGTAA+TGG | - | chr5_3:16954351-16954370 | None:intergenic | 25.0% |
| !!! | ACTGATGATAAGTTATTTTG+TGG | - | chr5_3:16954364-16954383 | None:intergenic | 25.0% |
| ! | TCATTGTTAAACTTACTTCT+TGG | + | chr5_3:16954391-16954410 | Msa0802530:intron | 25.0% |
| !!! | TGTTTTTTGCTTTTTTTGGT+AGG | + | chr5_3:16954524-16954543 | Msa0802530:intron | 25.0% |
| !! | ATTTTGTGATACAGACATAA+AGG | + | chr5_3:16954584-16954603 | Msa0802530:intron | 25.0% |
| !!! | TAGAATGTATGTCATTTTCT+TGG | + | chr5_3:16954649-16954668 | Msa0802530:intron | 25.0% |
| ! | TAATGTTTAGCATTGTAAGA+TGG | - | chr5_3:16954731-16954750 | None:intergenic | 25.0% |
| !!! | TTCCACGATTTTTTATTCAT+GGG | - | chr5_3:16955095-16955114 | None:intergenic | 25.0% |
| !!! | ATTCCACGATTTTTTATTCA+TGG | - | chr5_3:16955096-16955115 | None:intergenic | 25.0% |
| ! | AAACACATCAGAATTAGAAT+TGG | + | chr5_3:16955530-16955549 | Msa0802530:intron | 25.0% |
| ! | AACACATCAGAATTAGAATT+GGG | + | chr5_3:16955531-16955550 | Msa0802530:intron | 25.0% |
| !! | ATATGGACTAATATAGTGTT+TGG | - | chr5_3:16955585-16955604 | None:intergenic | 25.0% |
| !! | CAAAAGGGAAATATCTTTTT+AGG | - | chr5_3:16955656-16955675 | None:intergenic | 25.0% |
| ! | AATTAACATGAGATGAAAAG+AGG | - | chr5_3:16955827-16955846 | None:intergenic | 25.0% |
| ! | TCTAACTTAAACTCTTGATT+TGG | - | chr5_3:16956158-16956177 | None:intergenic | 25.0% |
| ! | TAGAATTGCAATCAATTCAT+TGG | - | chr5_3:16956890-16956909 | None:intergenic | 25.0% |
| ! | AATTGATTGCAATTCTAAAC+AGG | + | chr5_3:16956893-16956912 | Msa0802530:three_prime_UTR | 25.0% |
| ! | GATAATAATCTTCTCATCAA+TGG | + | chr5_3:16957006-16957025 | Msa0802530:three_prime_UTR | 25.0% |
| TATGTAAGCAATTTGAGCTT+AGG | + | chr5_3:16952775-16952794 | Msa0802530:intron | 30.0% | |
| AGTTGCAAGTTTAGAAAGAA+AGG | + | chr5_3:16952818-16952837 | Msa0802530:intron | 30.0% | |
| GTTGCAAGTTTAGAAAGAAA+GGG | + | chr5_3:16952819-16952838 | Msa0802530:intron | 30.0% | |
| CTTGTTAGTTAGTTAGTTAG+TGG | + | chr5_3:16953064-16953083 | Msa0802530:intron | 30.0% | |
| !!! | TTAAATAGTGTTTTAGCGGT+GGG | + | chr5_3:16953225-16953244 | Msa0802530:intron | 30.0% |
| TTGTACTAAATAGTGTACTG+TGG | - | chr5_3:16953299-16953318 | None:intergenic | 30.0% | |
| TAATTATATTTCCTGAGGCT+TGG | + | chr5_3:16953527-16953546 | Msa0802530:intron | 30.0% | |
| TTGTACTAAATAGCCTATTG+CGG | - | chr5_3:16953713-16953732 | None:intergenic | 30.0% | |
| GTTATAGCATTGTCATGTAT+TGG | + | chr5_3:16953759-16953778 | Msa0802530:intron | 30.0% | |
| GGAAAAAATAGTTGGAGAAA+TGG | - | chr5_3:16953862-16953881 | None:intergenic | 30.0% | |
| AGGTTAAGGGAAAAAATAGT+TGG | - | chr5_3:16953870-16953889 | None:intergenic | 30.0% | |
| !!! | AGACAATTATTTTGAAACGG+AGG | + | chr5_3:16954245-16954264 | Msa0802530:intron | 30.0% |
| !!! | GACAATTATTTTGAAACGGA+GGG | + | chr5_3:16954246-16954265 | Msa0802530:intron | 30.0% |
| TCAAAACTTCAGAAATAGGT+AGG | - | chr5_3:16954296-16954315 | None:intergenic | 30.0% | |
| ! | GAAGTATGTAATGGAGAAAA+AGG | - | chr5_3:16954342-16954361 | None:intergenic | 30.0% |
| ! | TTTTGGTAGGAATTTCAAAC+TGG | + | chr5_3:16954537-16954556 | Msa0802530:intron | 30.0% |
| !!! | AATGTATGTCATTTTCTTGG+AGG | + | chr5_3:16954652-16954671 | Msa0802530:intron | 30.0% |
| TGCTAAAAACAAATGAGGAT+GGG | - | chr5_3:16954888-16954907 | None:intergenic | 30.0% | |
| TTGCTAAAAACAAATGAGGA+TGG | - | chr5_3:16954889-16954908 | None:intergenic | 30.0% | |
| ATGGTTGCTAAAAACAAATG+AGG | - | chr5_3:16954893-16954912 | None:intergenic | 30.0% | |
| CTTAAAAAATCAAAGGGCTT+TGG | + | chr5_3:16955060-16955079 | Msa0802530:intron | 30.0% | |
| TACCCATGAATAAAAAATCG+TGG | + | chr5_3:16955090-16955109 | Msa0802530:intron | 30.0% | |
| !!! | ATGAAAAAGCCTTGCTTTTT+TGG | + | chr5_3:16955347-16955366 | Msa0802530:intron | 30.0% |
| GTAGTTTATCCAAAAAAGCA+AGG | - | chr5_3:16955359-16955378 | None:intergenic | 30.0% | |
| !! | ACTACTTTTGAAAGTTTGTG+TGG | + | chr5_3:16955374-16955393 | Msa0802530:intron | 30.0% |
| !! | CTACTTTTGAAAGTTTGTGT+GGG | + | chr5_3:16955375-16955394 | Msa0802530:intron | 30.0% |
| !! | TACTTTTGAAAGTTTGTGTG+GGG | + | chr5_3:16955376-16955395 | Msa0802530:intron | 30.0% |
| AGTCATGAGTAATATACGAA+TGG | + | chr5_3:16955420-16955439 | Msa0802530:intron | 30.0% | |
| !!! | AGGGAAATATCTTTTTAGGT+AGG | - | chr5_3:16955652-16955671 | None:intergenic | 30.0% |
| TTAACGTTTCAATCTTTCAG+TGG | - | chr5_3:16955894-16955913 | None:intergenic | 30.0% | |
| GATAGCTGAAATTAAAGAGA+AGG | + | chr5_3:16956007-16956026 | Msa0802530:CDS | 30.0% | |
| ! | CTAAGGTTGCTGATATTTTT+GGG | - | chr5_3:16956109-16956128 | None:intergenic | 30.0% |
| !! | TCTAAGGTTGCTGATATTTT+TGG | - | chr5_3:16956110-16956129 | None:intergenic | 30.0% |
| TGCTAATCTGAATAATTGTC+TGG | - | chr5_3:16956262-16956281 | None:intergenic | 30.0% | |
| ! | TGTACGGATATTTTCTCAAA+CGG | + | chr5_3:16956318-16956337 | Msa0802530:CDS | 30.0% |
| AATCAATGATATAGCTTCCT+TGG | - | chr5_3:16956600-16956619 | None:intergenic | 30.0% | |
| ATTGATTGAAAAGCAAACTC+AGG | + | chr5_3:16956613-16956632 | Msa0802530:CDS | 30.0% | |
| AAGTGAAAGAACTTCATCAT+TGG | - | chr5_3:16956693-16956712 | None:intergenic | 30.0% | |
| !! | TTGCTTTTGGATCATTCTTA+TGG | + | chr5_3:16956750-16956769 | Msa0802530:CDS | 30.0% |
| ! | TGCTTTTGGATCATTCTTAT+GGG | + | chr5_3:16956751-16956770 | Msa0802530:CDS | 30.0% |
| TTTAGCAAGAAAAGGATACT+TGG | - | chr5_3:16956798-16956817 | None:intergenic | 30.0% | |
| GTCTTCTATTTAGCAAGAAA+AGG | - | chr5_3:16956806-16956825 | None:intergenic | 30.0% | |
| TACTACATTTCTCATGTTTG+TGG | - | chr5_3:16956953-16956972 | None:intergenic | 30.0% | |
| AAATGTATGTACAGTGCATT+AGG | + | chr5_3:16956972-16956991 | Msa0802530:three_prime_UTR | 30.0% | |
| ATAGCAACAATGCAAGTTTC+AGG | + | chr5_3:16952551-16952570 | Msa0802530:exon | 35.0% | |
| TCTTTCCACTGGATTTCTTA+AGG | + | chr5_3:16952670-16952689 | Msa0802530:CDS | 35.0% | |
| ! | TTAGTTGTGTTACTGCTGAA+AGG | + | chr5_3:16952903-16952922 | Msa0802530:intron | 35.0% |
| !! | TATTGATTCACAAGGCTTGT+AGG | + | chr5_3:16953192-16953211 | Msa0802530:intron | 35.0% |
| !!! | GTTAAATAGTGTTTTAGCGG+TGG | + | chr5_3:16953224-16953243 | Msa0802530:intron | 35.0% |
| AATAGTGTACTGTGGAACAA+TGG | - | chr5_3:16953291-16953310 | None:intergenic | 35.0% | |
| CAAACTAAATAGCAGTGCTA+TGG | + | chr5_3:16953360-16953379 | Msa0802530:intron | 35.0% | |
| TTTGTTAAATAGCGCTGTAG+CGG | + | chr5_3:16953391-16953410 | Msa0802530:intron | 35.0% | |
| TGCAATTAGTAACACTGTGT+AGG | + | chr5_3:16953812-16953831 | Msa0802530:intron | 35.0% | |
| GAGAAATGGATAGTCAATGT+GGG | - | chr5_3:16953848-16953867 | None:intergenic | 35.0% | |
| AAAACCATTAGAGATCCGAA+AGG | - | chr5_3:16953939-16953958 | None:intergenic | 35.0% | |
| GACTATTATTTAGAGACGGA+GGG | - | chr5_3:16954003-16954022 | None:intergenic | 35.0% | |
| TGACTATTATTTAGAGACGG+AGG | - | chr5_3:16954004-16954023 | None:intergenic | 35.0% | |
| ! | AGGTTTGTGCACGATTTTTA+AGG | + | chr5_3:16954028-16954047 | Msa0802530:intron | 35.0% |
| GAGCTCAAAACTTCAGAAAT+AGG | - | chr5_3:16954300-16954319 | None:intergenic | 35.0% | |
| TTGTACATGAGCTTCCTTTA+TGG | + | chr5_3:16954473-16954492 | Msa0802530:intron | 35.0% | |
| TAAGCCATGCTAATCCATAA+AGG | - | chr5_3:16954490-16954509 | None:intergenic | 35.0% | |
| TGTTTAGCATTGTAAGATGG+AGG | - | chr5_3:16954728-16954747 | None:intergenic | 35.0% | |
| TGTAGACGATTCTTCTTTGT+GGG | - | chr5_3:16954954-16954973 | None:intergenic | 35.0% | |
| ATGTAGACGATTCTTCTTTG+TGG | - | chr5_3:16954955-16954974 | None:intergenic | 35.0% | |
| TTCTAGTCAAATCATGGGAA+AGG | - | chr5_3:16955019-16955038 | None:intergenic | 35.0% | |
| !! | GCTAGTTCTAGTCAAATCAT+GGG | - | chr5_3:16955024-16955043 | None:intergenic | 35.0% |
| !! | AGCTAGTTCTAGTCAAATCA+TGG | - | chr5_3:16955025-16955044 | None:intergenic | 35.0% |
| TTTGACTAGAACTAGCTATG+TGG | + | chr5_3:16955028-16955047 | Msa0802530:intron | 35.0% | |
| ! | CACATGAAGACTTTTAGTAC+TGG | - | chr5_3:16955191-16955210 | None:intergenic | 35.0% |
| ! | CCTGCACATTCAATGTTTTA+GGG | + | chr5_3:16955232-16955251 | Msa0802530:intron | 35.0% |
| !! | CTGCACATTCAATGTTTTAG+GGG | + | chr5_3:16955233-16955252 | Msa0802530:intron | 35.0% |
| GTTAATGATCGAAGTCTTAG+TGG | + | chr5_3:16955323-16955342 | Msa0802530:intron | 35.0% | |
| ACGAATGGTAAAGCAAAACT+TGG | + | chr5_3:16955435-16955454 | Msa0802530:intron | 35.0% | |
| AAGCAAAACTTGGATACGAA+TGG | + | chr5_3:16955445-16955464 | Msa0802530:intron | 35.0% | |
| ACATGAGATGAAAAGAGGTA+AGG | - | chr5_3:16955822-16955841 | None:intergenic | 35.0% | |
| GTTTCAATCTTTCAGTGGTT+TGG | - | chr5_3:16955889-16955908 | None:intergenic | 35.0% | |
| CACTTGTTCATTAGGATCTA+AGG | - | chr5_3:16956126-16956145 | None:intergenic | 35.0% | |
| CTTAGATCCTAATGAACAAG+TGG | + | chr5_3:16956124-16956143 | Msa0802530:CDS | 35.0% | |
| CATGAATCCACTTGTTCATT+AGG | - | chr5_3:16956134-16956153 | None:intergenic | 35.0% | |
| ! | CTAATGAACAAGTGGATTCA+TGG | + | chr5_3:16956132-16956151 | Msa0802530:CDS | 35.0% |
| ATCTGAATAATTGTCTGGAG+AGG | - | chr5_3:16956257-16956276 | None:intergenic | 35.0% | |
| TCAGATTAGCAAAATCAAGC+TGG | + | chr5_3:16956271-16956290 | Msa0802530:CDS | 35.0% | |
| CAGATTAGCAAAATCAAGCT+GGG | + | chr5_3:16956272-16956291 | Msa0802530:CDS | 35.0% | |
| TACGCTGCTTCAATAATGTA+CGG | + | chr5_3:16956302-16956321 | Msa0802530:CDS | 35.0% | |
| ! | GTACGGATATTTTCTCAAAC+GGG | + | chr5_3:16956319-16956338 | Msa0802530:CDS | 35.0% |
| ! | TTTTCTTTACCCAAATCCTG+TGG | - | chr5_3:16956386-16956405 | None:intergenic | 35.0% |
| CGACGAAGGTTATTATGAAA+TGG | + | chr5_3:16956478-16956497 | Msa0802530:CDS | 35.0% | |
| GAAATGGATGACATGAATAC+TGG | + | chr5_3:16956494-16956513 | Msa0802530:CDS | 35.0% | |
| !!! | GTTTTGGAATCTGTTGCTTT+TGG | + | chr5_3:16956737-16956756 | Msa0802530:CDS | 35.0% |
| GGAGAAGAAGAGGAAAAAGA+AGG | - | chr5_3:16952459-16952478 | None:intergenic | 40.0% | |
| AAGAAAGTGAGGAGAAGAAG+AGG | - | chr5_3:16952469-16952488 | None:intergenic | 40.0% | |
| TAGCGTCAGAAACATGGAAA+TGG | - | chr5_3:16952643-16952662 | None:intergenic | 40.0% | |
| CATTCTTAGCGTCAGAAACA+TGG | - | chr5_3:16952649-16952668 | None:intergenic | 40.0% | |
| GCTAAGAATGTTCTTTCCAC+TGG | + | chr5_3:16952659-16952678 | Msa0802530:CDS | 40.0% | |
| GCTTACCTTAAGAAATCCAG+TGG | - | chr5_3:16952678-16952697 | None:intergenic | 40.0% | |
| GCAGCGATGTATCAAAATCT+AGG | + | chr5_3:16952931-16952950 | Msa0802530:intron | 40.0% | |
| GATATAGTGATGTTGCACAG+TGG | + | chr5_3:16953249-16953268 | Msa0802530:intron | 40.0% | |
| ACTAAATAGCAGTGCTATGG+TGG | + | chr5_3:16953363-16953382 | Msa0802530:intron | 40.0% | |
| GTTATAGCGATGTTGCATAG+TGG | + | chr5_3:16953572-16953591 | Msa0802530:intron | 40.0% | |
| GCTATAGCACTGTTGTGTAT+CGG | + | chr5_3:16953664-16953683 | Msa0802530:intron | 40.0% | |
| AACTGCTATTCTTCCGCAAT+AGG | + | chr5_3:16953697-16953716 | Msa0802530:intron | 40.0% | |
| GGAGAAATGGATAGTCAATG+TGG | - | chr5_3:16953849-16953868 | None:intergenic | 40.0% | |
| TGTACCTTTCGGATCTCTAA+TGG | + | chr5_3:16953932-16953951 | Msa0802530:intron | 40.0% | |
| ! | TTTGAAACGGAGGGAGTAAT+AGG | + | chr5_3:16954255-16954274 | Msa0802530:intron | 40.0% |
| TAGTTGCCTTACAACTTGCA+CGG | + | chr5_3:16954414-16954433 | Msa0802530:intron | 40.0% | |
| !! | GCTTCCTTTATGGATTAGCA+TGG | + | chr5_3:16954483-16954502 | Msa0802530:intron | 40.0% |
| ! | AATGAACCCTACAGTTTTCG+AGG | + | chr5_3:16954752-16954771 | Msa0802530:CDS | 40.0% |
| TTTCTCTAGCTGCTGATCAA+TGG | - | chr5_3:16954912-16954931 | None:intergenic | 40.0% | |
| AGAATCGTCTACATCATACG+AGG | + | chr5_3:16954961-16954980 | Msa0802530:CDS | 40.0% | |
| GTCAAATCATGGGAAAGGAA+AGG | - | chr5_3:16955014-16955033 | None:intergenic | 40.0% | |
| CTAGAACTAGCTATGTGGAA+AGG | + | chr5_3:16955033-16955052 | Msa0802530:intron | 40.0% | |
| AATCGTGGAATCTCTGCTTA+TGG | + | chr5_3:16955105-16955124 | Msa0802530:intron | 40.0% | |
| ! | GCCTGCACATTCAATGTTTT+AGG | + | chr5_3:16955231-16955250 | Msa0802530:intron | 40.0% |
| CCCTAAAACATTGAATGTGC+AGG | - | chr5_3:16955235-16955254 | None:intergenic | 40.0% | |
| GGGTGTGTGACTTAAAAAGA+AGG | + | chr5_3:16955396-16955415 | Msa0802530:intron | 40.0% | |
| ! | TCCCTTTTGCATTATGAGAC+TGG | + | chr5_3:16955667-16955686 | Msa0802530:intron | 40.0% |
| GCCAGTCTCATAATGCAAAA+GGG | - | chr5_3:16955671-16955690 | None:intergenic | 40.0% | |
| CTGACATGACAAGATCTTAC+TGG | - | chr5_3:16955714-16955733 | None:intergenic | 40.0% | |
| ! | TCAGTGGTTTGGCAGATAAA+GGG | - | chr5_3:16955878-16955897 | None:intergenic | 40.0% |
| ! | TTCAGTGGTTTGGCAGATAA+AGG | - | chr5_3:16955879-16955898 | None:intergenic | 40.0% |
| AGAAGCTGTTCATTCTTCAG+AGG | + | chr5_3:16956175-16956194 | Msa0802530:CDS | 40.0% | |
| GATACAGAGTCACTTATCTC+TGG | + | chr5_3:16956208-16956227 | Msa0802530:CDS | 40.0% | |
| AGTCACTTATCTCTGGTACT+AGG | + | chr5_3:16956215-16956234 | Msa0802530:CDS | 40.0% | |
| TATCTCTGGTACTAGGAGAA+CGG | + | chr5_3:16956222-16956241 | Msa0802530:CDS | 40.0% | |
| !! | TTCTCAAACGGGTTGATGAA+CGG | + | chr5_3:16956330-16956349 | Msa0802530:CDS | 40.0% |
| ATGAACGGTTTCAACTTGAG+AGG | + | chr5_3:16956345-16956364 | Msa0802530:CDS | 40.0% | |
| TTTCAACTTGAGAGGTCAGT+GGG | + | chr5_3:16956353-16956372 | Msa0802530:CDS | 40.0% | |
| GGGATTCAGATTCCTTGATT+AGG | + | chr5_3:16956444-16956463 | Msa0802530:CDS | 40.0% | |
| GTCAGGATAGATCCTAATCA+AGG | - | chr5_3:16956459-16956478 | None:intergenic | 40.0% | |
| TCATAATAACCTTCGTCGTC+AGG | - | chr5_3:16956476-16956495 | None:intergenic | 40.0% | |
| GATGACATGAATACTGGTGA+AGG | + | chr5_3:16956500-16956519 | Msa0802530:CDS | 40.0% | |
| GTTCTTTCACTTACCTTCTC+AGG | + | chr5_3:16956701-16956720 | Msa0802530:CDS | 40.0% | |
| ! | AGGCTTGACTATGCTTGTTT+TGG | + | chr5_3:16956721-16956740 | Msa0802530:CDS | 40.0% |
| AGTGCATTAGGTAGAACTAC+AGG | + | chr5_3:16956984-16957003 | Msa0802530:three_prime_UTR | 40.0% | |
| ! | TGTCGTGACTCTGAAGAACA+CGG | - | chr5_3:16952393-16952412 | None:intergenic | 45.0% |
| TTCCATCTTCATCCTTGCTC+CGG | + | chr5_3:16952603-16952622 | Msa0802530:CDS | 45.0% | |
| ! | ACATGGAAATGGCGGAATTC+CGG | - | chr5_3:16952632-16952651 | None:intergenic | 45.0% |
| CGTCAGAAACATGGAAATGG+CGG | - | chr5_3:16952640-16952659 | None:intergenic | 45.0% | |
| AAATAGCAGTGCTATGGTGG+TGG | + | chr5_3:16953366-16953385 | Msa0802530:intron | 45.0% | |
| GTAACACTGTGTAGGCTACA+AGG | + | chr5_3:16953820-16953839 | Msa0802530:intron | 45.0% | |
| ACTTCACCGTGCAAGTTGTA+AGG | - | chr5_3:16954423-16954442 | None:intergenic | 45.0% | |
| CCTCTACCTCGAAAACTGTA+GGG | - | chr5_3:16954761-16954780 | None:intergenic | 45.0% | |
| !! | CCTACAGTTTTCGAGGTAGA+GGG | + | chr5_3:16954759-16954778 | Msa0802530:CDS | 45.0% |
| TCAAATTGGAGAGGAGGAGA+AGG | - | chr5_3:16954827-16954846 | None:intergenic | 45.0% | |
| ACTGGTGACTCAAATTGGAG+AGG | - | chr5_3:16954836-16954855 | None:intergenic | 45.0% | |
| CTCCAATTTGAGTCACCAGT+TGG | + | chr5_3:16954836-16954855 | Msa0802530:CDS | 45.0% | |
| GACCAACTGGTGACTCAAAT+TGG | - | chr5_3:16954841-16954860 | None:intergenic | 45.0% | |
| GGATACGAATGGTATCCAAG+TGG | + | chr5_3:16955456-16955475 | Msa0802530:intron | 45.0% | |
| ATGGTATCCAAGTGGAACCA+TGG | + | chr5_3:16955464-16955483 | Msa0802530:intron | 45.0% | |
| ACTAACGCATGCTATTGCCA+TGG | - | chr5_3:16955484-16955503 | None:intergenic | 45.0% | |
| GGCAATAGCATGCGTTAGTT+AGG | + | chr5_3:16955485-16955504 | Msa0802530:intron | 45.0% | |
| AGAATTGGGCTGTGAGATTG+AGG | + | chr5_3:16955545-16955564 | Msa0802530:intron | 45.0% | |
| GGCCAGTCTCATAATGCAAA+AGG | - | chr5_3:16955672-16955691 | None:intergenic | 45.0% | |
| GGCAAGAATATGCATGTGTG+TGG | - | chr5_3:16955693-16955712 | None:intergenic | 45.0% | |
| ATCTTGTCATGTCAGCTGCA+TGG | + | chr5_3:16955719-16955738 | Msa0802530:intron | 45.0% | |
| ATCTCTGGTACTAGGAGAAC+GGG | + | chr5_3:16956223-16956242 | Msa0802530:CDS | 45.0% | |
| GTTTCAACTTGAGAGGTCAG+TGG | + | chr5_3:16956352-16956371 | Msa0802530:CDS | 45.0% | |
| TTCAACTTGAGAGGTCAGTG+GGG | + | chr5_3:16956354-16956373 | Msa0802530:CDS | 45.0% | |
| GGGACATTTCCACAGGATTT+GGG | + | chr5_3:16956374-16956393 | Msa0802530:CDS | 45.0% | |
| ! | TCTGAATCCCAGAGCTTGTT+TGG | - | chr5_3:16956434-16956453 | None:intergenic | 45.0% |
| ACTGGTGAAGGCAAATCATC+TGG | + | chr5_3:16956512-16956531 | Msa0802530:CDS | 45.0% | |
| GAGAGATTATGTGACGCAGT+TGG | + | chr5_3:16956538-16956557 | Msa0802530:CDS | 45.0% | |
| TTATGTGACGCAGTTGGATG+CGG | + | chr5_3:16956544-16956563 | Msa0802530:CDS | 45.0% | |
| TATAGCTTCCTTGGAGCGTA+CGG | - | chr5_3:16956591-16956610 | None:intergenic | 45.0% | |
| AAGCAAACTCAGGCCATCTT+TGG | + | chr5_3:16956623-16956642 | Msa0802530:CDS | 45.0% | |
| AAACTCAGGCCATCTTTGGA+AGG | + | chr5_3:16956627-16956646 | Msa0802530:CDS | 45.0% | |
| GATATCAGGCCTTCCAAAGA+TGG | - | chr5_3:16956639-16956658 | None:intergenic | 45.0% | |
| AAGCATAGTCAAGCCTGAGA+AGG | - | chr5_3:16956717-16956736 | None:intergenic | 45.0% | |
| TGCTGCAATCAGCGACGTTA+TGG | + | chr5_3:16952574-16952593 | Msa0802530:CDS | 50.0% | |
| TGCAATCAGCGACGTTATGG+TGG | + | chr5_3:16952577-16952596 | Msa0802530:CDS | 50.0% | |
| !! | CCCTACAGTTTTCGAGGTAG+AGG | + | chr5_3:16954758-16954777 | Msa0802530:CDS | 50.0% |
| CCCTCTACCTCGAAAACTGT+AGG | - | chr5_3:16954762-16954781 | None:intergenic | 50.0% | |
| GGTGACTCAAATTGGAGAGG+AGG | - | chr5_3:16954833-16954852 | None:intergenic | 50.0% | |
| TGTTCCAACAGCTGACCAAC+TGG | - | chr5_3:16954854-16954873 | None:intergenic | 50.0% | |
| GCTATTGCCATGGTTCCACT+TGG | - | chr5_3:16955474-16955493 | None:intergenic | 50.0% | |
| ! | GAAGGAAAAGCGCACAACAC+TGG | + | chr5_3:16956025-16956044 | Msa0802530:CDS | 50.0% |
| !! | GTACTAGGAGAACGGGTTGT+GGG | + | chr5_3:16956230-16956249 | Msa0802530:CDS | 50.0% |
| GGGGACATTTCCACAGGATT+TGG | + | chr5_3:16956373-16956392 | Msa0802530:CDS | 50.0% | |
| ATCGCCACCAAACAAGCTCT+GGG | + | chr5_3:16956424-16956443 | Msa0802530:CDS | 50.0% | |
| ! | GAATCCCAGAGCTTGTTTGG+TGG | - | chr5_3:16956431-16956450 | None:intergenic | 50.0% |
| AGGATCTATCCTGACGACGA+AGG | + | chr5_3:16956464-16956483 | Msa0802530:CDS | 50.0% | |
| GACCGGAGCAAGGATGAAGA+TGG | - | chr5_3:16952608-16952627 | None:intergenic | 55.0% | |
| TTCATCCTTGCTCCGGTCAC+CGG | + | chr5_3:16952610-16952629 | Msa0802530:CDS | 55.0% | |
| ! | AATGGCGGAATTCCGGTGAC+CGG | - | chr5_3:16952625-16952644 | None:intergenic | 55.0% |
| ACACTGAGCTTCCAAGCCTC+AGG | - | chr5_3:16953541-16953560 | None:intergenic | 55.0% | |
| GTCACCAGTTGGTCAGCTGT+TGG | + | chr5_3:16954847-16954866 | Msa0802530:CDS | 55.0% | |
| !! | GGTACTAGGAGAACGGGTTG+TGG | + | chr5_3:16956229-16956248 | Msa0802530:CDS | 55.0% |
| GTCAGTGGGGACATTTCCAC+AGG | + | chr5_3:16956367-16956386 | Msa0802530:CDS | 55.0% | |
| !! | CAGAGCTTGTTTGGTGGCGA+TGG | - | chr5_3:16956425-16956444 | None:intergenic | 55.0% |
| CATCGCCACCAAACAAGCTC+TGG | + | chr5_3:16956423-16956442 | Msa0802530:CDS | 55.0% | |
| ! | ACTTGCTACCGTACGCTCCA+AGG | + | chr5_3:16956580-16956599 | Msa0802530:CDS | 55.0% |
| CAATCGAACCATCGCCAGAG+AGG | - | chr5_3:16956664-16956683 | None:intergenic | 55.0% | |
| GAATTCCGGTGACCGGAGCA+AGG | - | chr5_3:16952618-16952637 | None:intergenic | 60.0% | |
| TGTGACGCAGTTGGATGCGG+AGG | + | chr5_3:16956547-16956566 | Msa0802530:CDS | 60.0% | |
| AGGCCTGATATCCGCCTCTC+TGG | + | chr5_3:16956647-16956666 | Msa0802530:CDS | 60.0% | |
| TCGCCAGAGAGGCGGATATC+AGG | - | chr5_3:16956653-16956672 | None:intergenic | 60.0% | |
| GATATCCGCCTCTCTGGCGA+TGG | + | chr5_3:16956653-16956672 | Msa0802530:CDS | 60.0% | |
| TCGAACCATCGCCAGAGAGG+CGG | - | chr5_3:16956661-16956680 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16952363 | 16957078 | 16952363 | ID=Msa0802530;Name=Msa0802530 |
| chr5_3 | mRNA | 16952363 | 16957078 | 16952363 | ID=Msa0802530-mRNA-1;Parent=Msa0802530;Name=Msa0802530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=110|1|1|1|0.66|0.5|4|258|408 |
| chr5_3 | exon | 16952363 | 16952439 | 16952363 | ID=Msa0802530-mRNA-1:exon:7056;Parent=Msa0802530-mRNA-1 |
| chr5_3 | exon | 16952527 | 16952691 | 16952527 | ID=Msa0802530-mRNA-1:exon:7057;Parent=Msa0802530-mRNA-1 |
| chr5_3 | exon | 16954719 | 16954996 | 16954719 | ID=Msa0802530-mRNA-1:exon:7058;Parent=Msa0802530-mRNA-1 |
| chr5_3 | exon | 16956004 | 16957078 | 16956004 | ID=Msa0802530-mRNA-1:exon:7059;Parent=Msa0802530-mRNA-1 |
| chr5_3 | five_prime_UTR | 16952363 | 16952439 | 16952363 | ID=Msa0802530-mRNA-1:five_prime_utr;Parent=Msa0802530-mRNA-1 |
| chr5_3 | five_prime_UTR | 16952527 | 16952559 | 16952527 | ID=Msa0802530-mRNA-1:five_prime_utr;Parent=Msa0802530-mRNA-1 |
| chr5_3 | CDS | 16952560 | 16952691 | 16952560 | ID=Msa0802530-mRNA-1:cds;Parent=Msa0802530-mRNA-1 |
| chr5_3 | CDS | 16954719 | 16954996 | 16954719 | ID=Msa0802530-mRNA-1:cds;Parent=Msa0802530-mRNA-1 |
| chr5_3 | CDS | 16956004 | 16956820 | 16956004 | ID=Msa0802530-mRNA-1:cds;Parent=Msa0802530-mRNA-1 |
| chr5_3 | three_prime_UTR | 16956821 | 16957078 | 16956821 | ID=Msa0802530-mRNA-1:three_prime_utr;Parent=Msa0802530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
