AlfalfaGEDB | Msa0802530

M. sativa cultivar zhongmu-4 / Msa0802530

KEGG: -
GO: -
PFAM: PF05542.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0802530	XP_003612708.1	96.098	410	14	1	1	408	1	410	0.0	805

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0802530	sp\|Q9LVJ0\|UVB31_ARATH	46.407	334	167	6	80	406	91	419	3.48e-94	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0802530	G7K9K7	96.098	410	14	1	1	408	1	410	0.0	805

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0041780	Msa0802530	0.813205	2.880181e-51	-8.615850e-47
Msa0044320	Msa0802530	0.807778	4.281235e-50	-8.615850e-47
Msa0212730	Msa0802530	0.807601	4.666861e-50	-8.615850e-47
Msa0246300	Msa0802530	0.811447	6.970016e-51	-8.615850e-47
Msa0267710	Msa0802530	-0.800532	1.379028e-48	-8.615850e-47
Msa0273000	Msa0802530	0.811188	7.931445e-51	-8.615850e-47
Msa0311330	Msa0802530	0.829802	4.197363e-55	-8.615850e-47
Msa0378670	Msa0802530	0.814352	1.609536e-51	-8.615850e-47
Msa0378700	Msa0802530	0.805338	1.400820e-49	-8.615850e-47
Msa0408160	Msa0802530	0.808129	3.604442e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0802530	MtrunA17_Chr5g0410131	96.098	410	14	1	1	408	1	410	0.0	805
Msa0802530	MtrunA17_Chr8g0393251	48.214	336	157	7	83	406	89	419	9.25e-103	311
Msa0802530	MtrunA17_Chr6g0479321	43.560	427	209	11	1	406	1	416	1.80e-102	310
Msa0802530	MtrunA17_Chr8g0339211	32.584	356	201	10	67	403	32	367	1.51e-51	177
Msa0802530	MtrunA17_Chr7g0234851	29.278	263	130	8	155	404	1	220	1.12e-19	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0802530	AT1G32160.1	60.054	368	134	6	46	406	43	404	1.20e-151	435
Msa0802530	AT1G48450.1	43.956	364	175	6	64	406	66	421	1.02e-97	298
Msa0802530	AT3G17800.1	46.407	334	167	6	80	406	91	419	3.54e-95	291
Msa0802530	AT3G17800.2	46.407	334	167	6	80	406	97	425	4.62e-95	291
Msa0802530	AT1G48450.3	50.000	206	97	4	64	264	66	270	8.68e-63	205
Msa0802530	AT1G48450.2	50.000	206	97	4	64	264	66	270	1.41e-62	205
Msa0802530	AT3G07310.1	34.615	338	164	7	81	405	60	353	5.44e-51	176
Msa0802530	AT3G07310.2	35.231	281	128	6	135	405	13	249	1.57e-45	158
Msa0802530	AT5G48590.1	32.092	349	173	7	61	403	38	328	3.39e-45	159

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Find 100 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGGCCATCTTTGGA+AGG	0.573455	5_3:+16956627	Msa0802530:CDS
AAATGTATGTACAGTGCATT+AGG	0.415561	5_3:+16956972	Msa0802530:three_prime_UTR
AAGCAAACTCAGGCCATCTT+TGG	0.319554	5_3:+16956623	Msa0802530:CDS
AAGCATAGTCAAGCCTGAGA+AGG	0.589966	5_3:-16956714	None:intergenic
AAGTGAAAGAACTTCATCAT+TGG	0.547625	5_3:-16956690	None:intergenic
AATCAATGATATAGCTTCCT+TGG	0.338228	5_3:-16956597	None:intergenic
AATGGCGGAATTCCGGTGAC+CGG	0.555817	5_3:-16952622	None:intergenic
AATTGATTGCAATTCTAAAC+AGG	0.375403	5_3:+16956893	Msa0802530:three_prime_UTR
ACATGGAAATGGCGGAATTC+CGG	0.346199	5_3:-16952629	None:intergenic
ACTGGTGAAGGCAAATCATC+TGG	0.458702	5_3:+16956512	Msa0802530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTAAGCAATTTGAGCTT+AGG	+	chr5_3:16952775-16952794	Msa0802530:intron	30.0%
AGTTGCAAGTTTAGAAAGAA+AGG	+	chr5_3:16952818-16952837	Msa0802530:intron	30.0%
GTTGCAAGTTTAGAAAGAAA+GGG	+	chr5_3:16952819-16952838	Msa0802530:intron	30.0%
CTTGTTAGTTAGTTAGTTAG+TGG	+	chr5_3:16953064-16953083	Msa0802530:intron	30.0%
TTGTACTAAATAGTGTACTG+TGG	-	chr5_3:16953299-16953318	None:intergenic	30.0%
TAATTATATTTCCTGAGGCT+TGG	+	chr5_3:16953527-16953546	Msa0802530:intron	30.0%
TTGTACTAAATAGCCTATTG+CGG	-	chr5_3:16953713-16953732	None:intergenic	30.0%
GTTATAGCATTGTCATGTAT+TGG	+	chr5_3:16953759-16953778	Msa0802530:intron	30.0%
GGAAAAAATAGTTGGAGAAA+TGG	-	chr5_3:16953862-16953881	None:intergenic	30.0%
AGGTTAAGGGAAAAAATAGT+TGG	-	chr5_3:16953870-16953889	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	16952363	16957078	16952363	ID=Msa0802530;Name=Msa0802530
chr5_3	mRNA	16952363	16957078	16952363	ID=Msa0802530-mRNA-1;Parent=Msa0802530;Name=Msa0802530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=110\|1\|1\|1\|0.66\|0.5\|4\|258\|408
chr5_3	exon	16952363	16952439	16952363	ID=Msa0802530-mRNA-1:exon:7056;Parent=Msa0802530-mRNA-1
chr5_3	exon	16952527	16952691	16952527	ID=Msa0802530-mRNA-1:exon:7057;Parent=Msa0802530-mRNA-1
chr5_3	exon	16954719	16954996	16954719	ID=Msa0802530-mRNA-1:exon:7058;Parent=Msa0802530-mRNA-1
chr5_3	exon	16956004	16957078	16956004	ID=Msa0802530-mRNA-1:exon:7059;Parent=Msa0802530-mRNA-1
chr5_3	five_prime_UTR	16952363	16952439	16952363	ID=Msa0802530-mRNA-1:five_prime_utr;Parent=Msa0802530-mRNA-1
chr5_3	five_prime_UTR	16952527	16952559	16952527	ID=Msa0802530-mRNA-1:five_prime_utr;Parent=Msa0802530-mRNA-1
chr5_3	CDS	16952560	16952691	16952560	ID=Msa0802530-mRNA-1:cds;Parent=Msa0802530-mRNA-1
chr5_3	CDS	16954719	16954996	16954719	ID=Msa0802530-mRNA-1:cds;Parent=Msa0802530-mRNA-1
chr5_3	CDS	16956004	16956820	16956004	ID=Msa0802530-mRNA-1:cds;Parent=Msa0802530-mRNA-1
chr5_3	three_prime_UTR	16956821	16957078	16956821	ID=Msa0802530-mRNA-1:three_prime_utr;Parent=Msa0802530-mRNA-1

Gene Sequence

>Msa0802530

ATGCAAGTTTCAGGTGCTGCAATCAGCGACGTTATGGTGGTTCTTCCATCTTCATCCTTGCTCCGGTCACCGGAATTCCGCCATTTCCATGTTTCTGACGCTAAGAATGTTCTTTCCACTGGATTTCTTAAGAGTTGTCCTCCATCTTACAATGCTAAACATTACAATGAACCCTACAGTTTTCGAGGTAGAGGGTTAGTTGTGAGAGCATCTACAGATTCAAGTGATAATTTTGTGCCTTCTCCTCCTCTCCAATTTGAGTCACCAGTTGGTCAGCTGTTGGAACAAATTTTGCGAACCCATCCTCATTTGTTTTTAGCAACCATTGATCAGCAGCTAGAGAAACTTCAGACTGAAAGAGATGCCCACAAAGAAGAATCGTCTACATCATACGAGGATTCCCTTTATAAGAGGATAGCTGAAATTAAAGAGAAGGAAAAGCGCACAACACTGGAAGAGATAATGTACTGCTTAATCGTGAACAAATTCAAAGAGAACAAAATTTCAATGATCCCAAAAATATCAGCAACCTTAGATCCTAATGAACAAGTGGATTCATGGCCAAATCAAGAGTTTAAGTTAGAAGCTGTTCATTCTTCAGAGGCATTTGAGATGATACAGAGTCACTTATCTCTGGTACTAGGAGAACGGGTTGTGGGTCCTCTCCAGACAATTATTCAGATTAGCAAAATCAAGCTGGGTAAGTTATACGCTGCTTCAATAATGTACGGATATTTTCTCAAACGGGTTGATGAACGGTTTCAACTTGAGAGGTCAGTGGGGACATTTCCACAGGATTTGGGTAAAGAAAATGTTAGTTTTGATGAACCATCGCCACCAAACAAGCTCTGGGATTCAGATTCCTTGATTAGGATCTATCCTGACGACGAAGGTTATTATGAAATGGATGACATGAATACTGGTGAAGGCAAATCATCTGGACTGAGAGATTATGTGACGCAGTTGGATGCGGAGGCACTTCAGAGACTTGCTACCGTACGCTCCAAGGAAGCTATATCATTGATTGAAAAGCAAACTCAGGCCATCTTTGGAAGGCCTGATATCCGCCTCTCTGGCGATGGTTCGATTGAAAGTACCAATGATGAAGTTCTTTCACTTACCTTCTCAGGCTTGACTATGCTTGTTTTGGAATCTGTTGCTTTTGGATCATTCTTATGGGACGAAGAAAACTATGTTGAGTCCAAGTATCCTTTTCTTGCTAAATAG

Protein sequence

>Msa0802530

MQVSGAAISDVMVVLPSSSLLRSPEFRHFHVSDAKNVLSTGFLKSCPPSYNAKHYNEPYSFRGRGLVVRASTDSSDNFVPSPPLQFESPVGQLLEQILRTHPHLFLATIDQQLEKLQTERDAHKEESSTSYEDSLYKRIAEIKEKEKRTTLEEIMYCLIVNKFKENKISMIPKISATLDPNEQVDSWPNQEFKLEAVHSSEAFEMIQSHLSLVLGERVVGPLQTIIQISKIKLGKLYAASIMYGYFLKRVDERFQLERSVGTFPQDLGKENVSFDEPSPPNKLWDSDSLIRIYPDDEGYYEMDDMNTGEGKSSGLRDYVTQLDAEALQRLATVRSKEAISLIEKQTQAIFGRPDIRLSGDGSIESTNDEVLSLTFSGLTMLVLESVAFGSFLWDEENYVESKYPFLAK*