AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431870 MtrunA17_Chr7g0227081 98.966 387 3 1 1 387 1 386 0.0 793
Msa1431870 MtrunA17_Chr8g0381661 77.895 380 83 1 6 385 12 390 0.0 652
Msa1431870 MtrunA17_Chr3g0130111 77.183 355 81 0 31 385 11 365 0.0 605
Msa1431870 MtrunA17_Chr4g0064121 60.000 330 128 2 59 385 33 361 9.97e-154 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431870 AT3G27540.1 77.662 385 85 1 1 385 1 384 0.0 662
Msa1431870 AT5G14480.1 77.003 387 89 0 1 387 1 387 0.0 655
Msa1431870 AT1G12990.1 75.979 383 89 2 5 386 11 391 0.0 629
Msa1431870 AT1G67880.1 75.393 382 89 2 5 385 11 388 0.0 616
Msa1431870 AT3G01620.1 73.454 388 102 1 1 387 1 388 0.0 613
Msa1431870 AT2G13290.2 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa1431870 AT2G13290.1 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa1431870 AT3G26445.1 76.119 67 16 0 210 276 48 114 8.80e-31 114

Find 103 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAGGGTTTCGAAAAT+TGG 0.131488 tig0026915:+48899 None:intergenic
CCTAATAGTTGCATGGAATT+TGG 0.131863 tig0026915:-48800 Msa1431870:three_prime_UTR
TCCTGAAGAGTATACATTTA+AGG 0.167482 tig0026915:-49189 Msa1431870:CDS
TCAAATTTCAAAATCTTATC+AGG 0.211616 tig0026915:+48939 None:intergenic
GAATCAAACTCAACATTTAC+AGG 0.238043 tig0026915:-49776 Msa1431870:CDS
TCTTGTCGGTCTGGTATCTA+TGG 0.277247 tig0026915:+49414 None:intergenic
TGTTTCACAGTACATCCTTC+TGG 0.294348 tig0026915:-49798 Msa1431870:CDS
GAAATCTAAAGAAATCAAAA+TGG 0.302602 tig0026915:+48697 None:intergenic
GAACAATCGGTGGAAGATTC+AGG 0.321978 tig0026915:-49682 Msa1431870:CDS
TAGATGAATAAGACGCCTAT+TGG 0.351138 tig0026915:+50046 None:intergenic
TCCTTAAATGTATACTCTTC+AGG 0.352191 tig0026915:+49188 None:intergenic
TTCATGCAAACCCAATTATA+AGG 0.361248 tig0026915:+48834 None:intergenic
GCATGGAATTTGGATTTCAT+TGG 0.367810 tig0026915:-48790 Msa1431870:three_prime_UTR
CCAAATTCCATGCAACTATT+AGG 0.379612 tig0026915:+48800 None:intergenic
TGACGTGCCTCCTCGATAAA+CGG 0.388943 tig0026915:+49647 None:intergenic
TGCATATCACGTTCTGAATC+CGG 0.391551 tig0026915:+49237 None:intergenic
GTGTGCATACCTTGTCTTGT+CGG 0.397316 tig0026915:+49400 None:intergenic
TATACATTTAAGGAGATTAT+CGG 0.397622 tig0026915:-49179 Msa1431870:CDS
GGTACAAAAGCTTGCCCAAA+AGG 0.403881 tig0026915:+48855 None:intergenic
CGTGACATGCTCAGCGCTGC+AGG 0.408769 tig0026915:+50130 None:intergenic
GAATCTCTGTGCAAACTTCA+TGG 0.414415 tig0026915:-49920 Msa1431870:CDS
AGATGAATAAGACGCCTATT+GGG 0.421213 tig0026915:+50047 None:intergenic
ATGTTTGTGATCATCCCAAT+AGG 0.422790 tig0026915:-50061 Msa1431870:CDS
GATCTACTGCTGTCGGATGC+TGG 0.423369 tig0026915:-49365 Msa1431870:CDS
GTCGAGCCGCGACTAACATA+TGG 0.428067 tig0026915:-49704 Msa1431870:CDS
AAATCTAAAGAAATCAAAAT+GGG 0.434036 tig0026915:+48698 None:intergenic
ATCACGTTCTGAATCCGGTC+AGG 0.441353 tig0026915:+49242 None:intergenic
CTCATTACTTAAACCCTGAC+CGG 0.448929 tig0026915:-49256 Msa1431870:CDS
CTTTCTCTTCTGCAGTTACC+AGG 0.453735 tig0026915:+49068 None:intergenic
CATACCTTGTCTTGTCGGTC+TGG 0.457355 tig0026915:+49405 None:intergenic
CTCAGTTGTAGATGAAGAAT+CGG 0.476003 tig0026915:+49494 None:intergenic
ATACTTTCTGAGACCGTTGT+GGG 0.478203 tig0026915:-50002 Msa1431870:CDS
TATACACATTCCAACCTCTT+CGG 0.478962 tig0026915:-48761 Msa1431870:three_prime_UTR
GATCAGCTTCTGAGGATAGC+AGG 0.479846 tig0026915:-49611 Msa1431870:CDS
CTTCTTCTTCACCATGTCTG+AGG 0.482163 tig0026915:-51029 Msa1431870:exon
GTCTTATTCATCTATTTGCA+CGG 0.483642 tig0026915:-50037 Msa1431870:CDS
AAGGAGATTATCGGAAAACT+AGG 0.496659 tig0026915:-49170 Msa1431870:CDS
GGGATTTCATGAAACGGCTT+CGG 0.497964 tig0026915:+49971 None:intergenic
CGGTCAGGGTTTAAGTAATG+AGG 0.504563 tig0026915:+49257 None:intergenic
TGTGCAAACTTCATGGGTGG+GGG 0.504853 tig0026915:-49913 Msa1431870:CDS
CGACTAACATATGGAACAAT+CGG 0.508701 tig0026915:-49695 Msa1431870:CDS
CTCTGTGCAAACTTCATGGG+TGG 0.514225 tig0026915:-49916 Msa1431870:CDS
CTGCGATGATGTTTGTGGCC+AGG 0.515957 tig0026915:-50975 Msa1431870:intron
CTGTGCAAACTTCATGGGTG+GGG 0.519259 tig0026915:-49914 Msa1431870:CDS
GGCACGTCAAAGAGTTGTGT+TGG 0.521101 tig0026915:-49633 Msa1431870:CDS
AACCCTATTGGAGGGAAAAG+TGG 0.523950 tig0026915:-48888 Msa1431870:three_prime_UTR
GCAACTATTAGGCAAGTTGA+GGG 0.526905 tig0026915:+48811 None:intergenic
CGGTGGAAGATTCAGGAGAA+AGG 0.526990 tig0026915:-49675 Msa1431870:CDS
CGCTGAGCATGTCACGACTC+AGG 0.527124 tig0026915:-50123 Msa1431870:CDS
TGCAACTATTAGGCAAGTTG+AGG 0.529302 tig0026915:+48810 None:intergenic
GCTGAATAAGAATGAGGAAT+CGG 0.531188 tig0026915:+49146 None:intergenic
GAGATTGATTGTGTGTGCAC+TGG 0.534267 tig0026915:+49541 None:intergenic
TCTGTGCAAACTTCATGGGT+GGG 0.538769 tig0026915:-49915 Msa1431870:CDS
AATCTCTGTGCAAACTTCAT+GGG 0.541036 tig0026915:-49919 Msa1431870:CDS
ATACAAATTCACTGATATGA+CGG 0.544679 tig0026915:+49321 None:intergenic
CAGTAAGCAACCGAAGAGGT+TGG 0.544723 tig0026915:+48751 None:intergenic
CTATTGCTTGCGAAAATCAA+CGG 0.550525 tig0026915:+49743 None:intergenic
GATATCTGCGATGATGTTTG+TGG 0.552217 tig0026915:-50980 Msa1431870:CDS
TAGTGAGGGATTTCATGAAA+CGG 0.558083 tig0026915:+49965 None:intergenic
AGATACAAGTACTTGTTGCC+TGG 0.559240 tig0026915:-49086 Msa1431870:CDS
TGGATATGCTTACTATTCGA+TGG 0.561251 tig0026915:-49838 Msa1431870:CDS
CATACTTTCTGAGACCGTTG+TGG 0.564319 tig0026915:-50003 Msa1431870:CDS
ATGTTGAGTTTGATTCCAGA+AGG 0.569190 tig0026915:+49783 None:intergenic
CAACAAGTACTTGTATCTAT+CGG 0.570155 tig0026915:+49091 None:intergenic
GGTAACTGCAGAAGAGAAAG+TGG 0.570217 tig0026915:-49065 Msa1431870:CDS
CATAGGGTCACTCTTTAGAG+AGG 0.576940 tig0026915:-48980 Msa1431870:three_prime_UTR
TCACGTTCTGAATCCGGTCA+GGG 0.579215 tig0026915:+49243 None:intergenic
TTATCACGAGAACGTGTCGA+TGG 0.579813 tig0026915:-49942 Msa1431870:CDS
ATTTCATGAAACGGCTTCGG+CGG 0.579993 tig0026915:+49974 None:intergenic
CTTGACAACAAAAGCTGGAG+AGG 0.583300 tig0026915:-49443 Msa1431870:CDS
CAACTTGCCTAATAGTTGCA+TGG 0.583366 tig0026915:-48807 Msa1431870:three_prime_UTR
AGGATGTACTGTGAAACATA+AGG 0.583802 tig0026915:+49803 None:intergenic
TTGTGTTGGATCAGCTTCTG+AGG 0.586419 tig0026915:-49619 Msa1431870:CDS
ATCAGCTTCTGAGGATAGCA+GGG 0.587503 tig0026915:-49610 Msa1431870:CDS
TCTTATTCATCTATTTGCAC+GGG 0.591487 tig0026915:-50036 Msa1431870:CDS
TTCGAAAATTGGATAAACAG+AGG 0.593280 tig0026915:+48910 None:intergenic
AGATTGATTGTGTGTGCACT+GGG 0.593842 tig0026915:+49542 None:intergenic
ACAGCATCAAAGACTCGTCT+CGG 0.595137 tig0026915:+49878 None:intergenic
TGCACTGCTGAATAAGAATG+AGG 0.596632 tig0026915:+49140 None:intergenic
ACAGTCTGATCTACTGCTGT+CGG 0.597913 tig0026915:-49372 Msa1431870:CDS
AAGTGGCTGACTCTGAATGT+AGG 0.608682 tig0026915:-49048 Msa1431870:exon
CGATTCTTCATCTACAACTG+AGG 0.609395 tig0026915:-49493 Msa1431870:CDS
TTCGGCGGAGACTCCCACAA+CGG 0.613707 tig0026915:+49989 None:intergenic
ATAGGGTCACTCTTTAGAGA+GGG 0.617972 tig0026915:-48979 Msa1431870:three_prime_UTR
AATCTAAAGAAATCAAAATG+GGG 0.630393 tig0026915:+48699 None:intergenic
GGAATCGCACTCGATCATAG+TGG 0.631798 tig0026915:+49279 None:intergenic
ATTCAGAACGTGATATGCAA+AGG 0.632732 tig0026915:-49233 Msa1431870:CDS
GATACCAGACCGACAAGACA+AGG 0.635119 tig0026915:-49409 Msa1431870:CDS
GGTCAGGGTTTAAGTAATGA+GGG 0.637006 tig0026915:+49258 None:intergenic
AGTTGTAGATGAAGAATCGG+AGG 0.638652 tig0026915:+49497 None:intergenic
GTTGTAGATGAAGAATCGGA+GGG 0.639453 tig0026915:+49498 None:intergenic
CGTTCTCGTGATAATAGTGA+GGG 0.639469 tig0026915:+49951 None:intergenic
ATCTAAAGAAATCAAAATGG+GGG 0.639917 tig0026915:+48700 None:intergenic
TTGACAACAAAAGCTGGAGA+GGG 0.640361 tig0026915:-49442 Msa1431870:CDS
ATTGTTCCATATGTTAGTCG+CGG 0.643023 tig0026915:+49698 None:intergenic
CACACACAATCAATCTCTTG+AGG 0.645085 tig0026915:-49535 Msa1431870:CDS
ACGTTCTCGTGATAATAGTG+AGG 0.652321 tig0026915:+49950 None:intergenic
ATTATAGTACTCCTCAGACA+TGG 0.659192 tig0026915:+51018 None:intergenic
GGAAAATCCGTTTATCGAGG+AGG 0.661999 tig0026915:-49654 Msa1431870:CDS
ACACAATCAATCTCTTGAGG+TGG 0.662731 tig0026915:-49532 Msa1431870:CDS
AAATCAGTAAGCAACCGAAG+AGG 0.668086 tig0026915:+48747 None:intergenic
CTAACATATGGAACAATCGG+TGG 0.687645 tig0026915:-49692 Msa1431870:CDS
AAAGGAAAATCCGTTTATCG+AGG 0.694930 tig0026915:-49657 Msa1431870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTTTTTTTCC+TGG - tig0026915:48997-49016 Msa1431870:three_prime_UTR 10.0%
!!! TTTTTTAATTTTTTTTTCCT+GGG - tig0026915:48998-49017 Msa1431870:three_prime_UTR 10.0%
!!! TTTTTTTAATTTTTTTTTCC+TGG - tig0026915:48997-49016 Msa1431870:three_prime_UTR 10.0%
!!! TTTTTTAATTTTTTTTTCCT+GGG - tig0026915:48998-49017 Msa1431870:three_prime_UTR 10.0%
!! AAAAAAAAAAAAAAAGAACC+TGG + tig0026915:48849-48868 None:intergenic 15.0%
!!! TTTTTTTTTTTCCTATTTCT+TGG - tig0026915:48858-48877 Msa1431870:three_prime_UTR 15.0%
!!! TTTTTTTTTGTTTTGTTGTA+TGG - tig0026915:48938-48957 Msa1431870:three_prime_UTR 15.0%
!! ACAAAAAAAAACAACAAATT+TGG + tig0026915:49049-49068 None:intergenic 15.0%
!!! TTTGAATTCAATTTTTTTTC+TGG - tig0026915:49081-49100 Msa1431870:CDS 15.0%
!!! TTGAATTCAATTTTTTTTCT+GGG - tig0026915:49082-49101 Msa1431870:CDS 15.0%
!!! CTATTTTTGTTTTGAATTTA+TGG - tig0026915:49158-49177 Msa1431870:CDS 15.0%
!! ATAAAATAAATGACAAAATG+TGG - tig0026915:49429-49448 Msa1431870:CDS 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG - tig0026915:50784-50803 Msa1431870:intron 15.0%
!! AAAAAAAAAAAAAAAGAACC+TGG + tig0026915:48849-48868 None:intergenic 15.0%
!!! TTTTTTTTTTTCCTATTTCT+TGG - tig0026915:48858-48877 Msa1431870:three_prime_UTR 15.0%
!!! TTTTTTTTTGTTTTGTTGTA+TGG - tig0026915:48938-48957 Msa1431870:three_prime_UTR 15.0%
!! ACAAAAAAAAACAACAAATT+TGG + tig0026915:49049-49068 None:intergenic 15.0%
!!! TTTGAATTCAATTTTTTTTC+TGG - tig0026915:49081-49100 Msa1431870:CDS 15.0%
!!! TTGAATTCAATTTTTTTTCT+GGG - tig0026915:49082-49101 Msa1431870:CDS 15.0%
!!! CTATTTTTGTTTTGAATTTA+TGG - tig0026915:49158-49177 Msa1431870:CDS 15.0%
!! ATAAAATAAATGACAAAATG+TGG - tig0026915:49429-49448 Msa1431870:CDS 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG - tig0026915:50784-50803 Msa1431870:intron 15.0%
!! AAACTTGAAAAAAACCATAA+TGG + tig0026915:49216-49235 None:intergenic 20.0%
!!! TTCAAGTTTTTAAACCTATT+AGG - tig0026915:49227-49246 Msa1431870:CDS 20.0%
!!! AATTGTGGTTTTTTTTTATG+TGG - tig0026915:49254-49273 Msa1431870:CDS 20.0%
!!! TTTTATGTGGTATTAGAATT+AGG - tig0026915:49267-49286 Msa1431870:CDS 20.0%
!! TTTATGTGGTATTAGAATTA+GGG - tig0026915:49268-49287 Msa1431870:CDS 20.0%
!! CTACAAATGAAAATACAAAT+GGG + tig0026915:49406-49425 None:intergenic 20.0%
!! TCTACAAATGAAAATACAAA+TGG + tig0026915:49407-49426 None:intergenic 20.0%
!!! AGAAAATTTTGATGATTAAG+CGG - tig0026915:49604-49623 Msa1431870:CDS 20.0%
!! TATACATTTAAGGAGATTAT+CGG - tig0026915:50624-50643 Msa1431870:intron 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG - tig0026915:50774-50793 Msa1431870:intron 20.0%
!! TCAAATTTCAAAATCTTATC+AGG + tig0026915:50867-50886 None:intergenic 20.0%
!! AAACTTGAAAAAAACCATAA+TGG + tig0026915:49216-49235 None:intergenic 20.0%
!!! TTCAAGTTTTTAAACCTATT+AGG - tig0026915:49227-49246 Msa1431870:CDS 20.0%
!!! AATTGTGGTTTTTTTTTATG+TGG - tig0026915:49254-49273 Msa1431870:CDS 20.0%
!!! TTTTATGTGGTATTAGAATT+AGG - tig0026915:49267-49286 Msa1431870:CDS 20.0%
!! TTTATGTGGTATTAGAATTA+GGG - tig0026915:49268-49287 Msa1431870:CDS 20.0%
!! CTACAAATGAAAATACAAAT+GGG + tig0026915:49406-49425 None:intergenic 20.0%
!! TCTACAAATGAAAATACAAA+TGG + tig0026915:49407-49426 None:intergenic 20.0%
!!! AGAAAATTTTGATGATTAAG+CGG - tig0026915:49604-49623 Msa1431870:CDS 20.0%
!! TATACATTTAAGGAGATTAT+CGG - tig0026915:50624-50643 Msa1431870:intron 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG - tig0026915:50774-50793 Msa1431870:intron 20.0%
!! TCAAATTTCAAAATCTTATC+AGG + tig0026915:50867-50886 None:intergenic 20.0%
!!! ACACTTTTTTTTTTCTTCTG+TGG - tig0026915:48745-48764 Msa1431870:three_prime_UTR 25.0%
!!! CACTTTTTTTTTTCTTCTGT+GGG - tig0026915:48746-48765 Msa1431870:three_prime_UTR 25.0%
! ACAAAAAACAACCAAGAAAT+AGG + tig0026915:48872-48891 None:intergenic 25.0%
!!! TTCTTGGTTGTTTTTTGTTT+TGG - tig0026915:48874-48893 Msa1431870:three_prime_UTR 25.0%
!!! TTTTTGTTTTGTTGTATGGT+TGG - tig0026915:48942-48961 Msa1431870:three_prime_UTR 25.0%
!!! TTTTGTTTTGTTGTATGGTT+GGG - tig0026915:48943-48962 Msa1431870:three_prime_UTR 25.0%
! TTGAATTTATGGATGATTGA+TGG - tig0026915:49169-49188 Msa1431870:CDS 25.0%
! TGAATTTATGGATGATTGAT+GGG - tig0026915:49170-49189 Msa1431870:CDS 25.0%
!!! TTTTGATTTCTAAGCCATTA+TGG - tig0026915:49199-49218 Msa1431870:CDS 25.0%
! AACATGTTACATAGACAAAA+GGG + tig0026915:49329-49348 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG + tig0026915:49330-49349 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG - tig0026915:49436-49455 Msa1431870:CDS 25.0%
!!! TCATTTCATTGTTTGATTTG+AGG - tig0026915:49482-49501 Msa1431870:CDS 25.0%
! ATACAAATTCACTGATATGA+CGG + tig0026915:50485-50504 None:intergenic 25.0%
! GCATTATTTAACAAAAATGC+AGG + tig0026915:50693-50712 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG - tig0026915:50807-50826 Msa1431870:intron 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG - tig0026915:50958-50977 Msa1431870:intron 25.0%
!! AGCTTTTGTACCTTATAATT+GGG - tig0026915:50959-50978 Msa1431870:intron 25.0%
!!! ACACTTTTTTTTTTCTTCTG+TGG - tig0026915:48745-48764 Msa1431870:three_prime_UTR 25.0%
!!! CACTTTTTTTTTTCTTCTGT+GGG - tig0026915:48746-48765 Msa1431870:three_prime_UTR 25.0%
! ACAAAAAACAACCAAGAAAT+AGG + tig0026915:48872-48891 None:intergenic 25.0%
!!! TTCTTGGTTGTTTTTTGTTT+TGG - tig0026915:48874-48893 Msa1431870:three_prime_UTR 25.0%
!!! TTTTTGTTTTGTTGTATGGT+TGG - tig0026915:48942-48961 Msa1431870:three_prime_UTR 25.0%
!!! TTTTGTTTTGTTGTATGGTT+GGG - tig0026915:48943-48962 Msa1431870:three_prime_UTR 25.0%
! TTGAATTTATGGATGATTGA+TGG - tig0026915:49169-49188 Msa1431870:CDS 25.0%
! TGAATTTATGGATGATTGAT+GGG - tig0026915:49170-49189 Msa1431870:CDS 25.0%
!!! TTTTGATTTCTAAGCCATTA+TGG - tig0026915:49199-49218 Msa1431870:CDS 25.0%
! AACATGTTACATAGACAAAA+GGG + tig0026915:49329-49348 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG + tig0026915:49330-49349 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG - tig0026915:49436-49455 Msa1431870:CDS 25.0%
!!! TCATTTCATTGTTTGATTTG+AGG - tig0026915:49482-49501 Msa1431870:CDS 25.0%
! ATACAAATTCACTGATATGA+CGG + tig0026915:50485-50504 None:intergenic 25.0%
! GCATTATTTAACAAAAATGC+AGG + tig0026915:50693-50712 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG - tig0026915:50807-50826 Msa1431870:intron 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG - tig0026915:50958-50977 Msa1431870:intron 25.0%
!! AGCTTTTGTACCTTATAATT+GGG - tig0026915:50959-50978 Msa1431870:intron 25.0%
! ATTAAACTTTTCACAAACCC+AGG + tig0026915:49018-49037 None:intergenic 30.0%
CATCAATACAGAGAGATAAA+GGG + tig0026915:49124-49143 None:intergenic 30.0%
ACATCAATACAGAGAGATAA+AGG + tig0026915:49125-49144 None:intergenic 30.0%
! TATCTCTCTGTATTGATGTT+TGG - tig0026915:49126-49145 Msa1431870:CDS 30.0%
AACCTATTAGGATTGAATTG+TGG - tig0026915:49239-49258 Msa1431870:CDS 30.0%
AACCACAATTCAATCCTAAT+AGG + tig0026915:49244-49263 None:intergenic 30.0%
CATAGACAAAAGGGTTTAAA+AGG + tig0026915:49320-49339 None:intergenic 30.0%
!! TTCATTGTTTGATTTGAGGT+TGG - tig0026915:49486-49505 Msa1431870:CDS 30.0%
! GTCTTATTCATCTATTTGCA+CGG - tig0026915:49766-49785 Msa1431870:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG - tig0026915:49767-49786 Msa1431870:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG - tig0026915:49945-49964 Msa1431870:CDS 30.0%
GAATCAAACTCAACATTTAC+AGG - tig0026915:50027-50046 Msa1431870:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG - tig0026915:50230-50249 Msa1431870:intron 30.0%
! TCCTGAAGAGTATACATTTA+AGG - tig0026915:50614-50633 Msa1431870:intron 30.0%
TCCTTAAATGTATACTCTTC+AGG + tig0026915:50618-50637 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG + tig0026915:50715-50734 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG - tig0026915:50806-50825 Msa1431870:intron 30.0%
TTCGAAAATTGGATAAACAG+AGG + tig0026915:50896-50915 None:intergenic 30.0%
TTCATGCAAACCCAATTATA+AGG + tig0026915:50972-50991 None:intergenic 30.0%
! ATTAAACTTTTCACAAACCC+AGG + tig0026915:49018-49037 None:intergenic 30.0%
CATCAATACAGAGAGATAAA+GGG + tig0026915:49124-49143 None:intergenic 30.0%
ACATCAATACAGAGAGATAA+AGG + tig0026915:49125-49144 None:intergenic 30.0%
! TATCTCTCTGTATTGATGTT+TGG - tig0026915:49126-49145 Msa1431870:CDS 30.0%
AACCTATTAGGATTGAATTG+TGG - tig0026915:49239-49258 Msa1431870:CDS 30.0%
AACCACAATTCAATCCTAAT+AGG + tig0026915:49244-49263 None:intergenic 30.0%
CATAGACAAAAGGGTTTAAA+AGG + tig0026915:49320-49339 None:intergenic 30.0%
!! TTCATTGTTTGATTTGAGGT+TGG - tig0026915:49486-49505 Msa1431870:CDS 30.0%
! GTCTTATTCATCTATTTGCA+CGG - tig0026915:49766-49785 Msa1431870:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG - tig0026915:49767-49786 Msa1431870:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG - tig0026915:49945-49964 Msa1431870:CDS 30.0%
GAATCAAACTCAACATTTAC+AGG - tig0026915:50027-50046 Msa1431870:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG - tig0026915:50230-50249 Msa1431870:intron 30.0%
! TCCTGAAGAGTATACATTTA+AGG - tig0026915:50614-50633 Msa1431870:intron 30.0%
TCCTTAAATGTATACTCTTC+AGG + tig0026915:50618-50637 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG + tig0026915:50715-50734 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG - tig0026915:50806-50825 Msa1431870:intron 30.0%
TTCGAAAATTGGATAAACAG+AGG + tig0026915:50896-50915 None:intergenic 30.0%
TTCATGCAAACCCAATTATA+AGG + tig0026915:50972-50991 None:intergenic 30.0%
ATTATAGTACTCCTCAGACA+TGG + tig0026915:48788-48807 None:intergenic 35.0%
TTATGTTGCCAATGCAAAAC+TGG - tig0026915:48966-48985 Msa1431870:three_prime_UTR 35.0%
GAAATCACATGAACAGAAAC+TGG + tig0026915:49464-49483 None:intergenic 35.0%
TGATATCATGCAGATGAAGT+TGG - tig0026915:49524-49543 Msa1431870:CDS 35.0%
TGCGAAATTAAGCATGTAGT+AGG - tig0026915:49578-49597 Msa1431870:CDS 35.0%
ACCAAAAACCTCTTAAGACA+CGG + tig0026915:49633-49652 None:intergenic 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG - tig0026915:49645-49664 Msa1431870:CDS 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG - tig0026915:49646-49665 Msa1431870:CDS 35.0%
ATGTTTGTGATCATCCCAAT+AGG - tig0026915:49742-49761 Msa1431870:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG + tig0026915:49759-49778 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG + tig0026915:49760-49779 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG + tig0026915:49841-49860 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG - tig0026915:49884-49903 Msa1431870:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG - tig0026915:49965-49984 Msa1431870:CDS 35.0%
AGGATGTACTGTGAAACATA+AGG + tig0026915:50003-50022 None:intergenic 35.0%
ATGTTGAGTTTGATTCCAGA+AGG + tig0026915:50023-50042 None:intergenic 35.0%
CTATTGCTTGCGAAAATCAA+CGG + tig0026915:50063-50082 None:intergenic 35.0%
!! GTTGATTTTCGCAAGCAATA+GGG - tig0026915:50062-50081 Msa1431870:CDS 35.0%
ATTGTTCCATATGTTAGTCG+CGG + tig0026915:50108-50127 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG - tig0026915:50108-50127 Msa1431870:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG - tig0026915:50146-50165 Msa1431870:intron 35.0%
CTCAGTTGTAGATGAAGAAT+CGG + tig0026915:50312-50331 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG - tig0026915:50355-50374 Msa1431870:intron 35.0%
ATTCAGAACGTGATATGCAA+AGG - tig0026915:50570-50589 Msa1431870:intron 35.0%
AAGGAGATTATCGGAAAACT+AGG - tig0026915:50633-50652 Msa1431870:intron 35.0%
GCTGAATAAGAATGAGGAAT+CGG + tig0026915:50660-50679 None:intergenic 35.0%
! TCCAATTTTCGAAACCCTAT+TGG - tig0026915:50903-50922 Msa1431870:intron 35.0%
TCCAATAGGGTTTCGAAAAT+TGG + tig0026915:50907-50926 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG - tig0026915:50906-50925 Msa1431870:intron 35.0%
! ATTTTCGAAACCCTATTGGA+GGG - tig0026915:50907-50926 Msa1431870:intron 35.0%
!!! AGTGGTTTTTTCATGCCTTT+TGG - tig0026915:50933-50952 Msa1431870:intron 35.0%
!!! GTGGTTTTTTCATGCCTTTT+GGG - tig0026915:50934-50953 Msa1431870:intron 35.0%
CCAAATTCCATGCAACTATT+AGG + tig0026915:51006-51025 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG - tig0026915:51003-51022 Msa1431870:CDS 35.0%
GCATGGAATTTGGATTTCAT+TGG - tig0026915:51013-51032 Msa1431870:CDS 35.0%
TATACACATTCCAACCTCTT+CGG - tig0026915:51042-51061 Msa1431870:five_prime_UTR 35.0%
ATTATAGTACTCCTCAGACA+TGG + tig0026915:48788-48807 None:intergenic 35.0%
TTATGTTGCCAATGCAAAAC+TGG - tig0026915:48966-48985 Msa1431870:three_prime_UTR 35.0%
GAAATCACATGAACAGAAAC+TGG + tig0026915:49464-49483 None:intergenic 35.0%
TGATATCATGCAGATGAAGT+TGG - tig0026915:49524-49543 Msa1431870:CDS 35.0%
TGCGAAATTAAGCATGTAGT+AGG - tig0026915:49578-49597 Msa1431870:CDS 35.0%
ACCAAAAACCTCTTAAGACA+CGG + tig0026915:49633-49652 None:intergenic 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG - tig0026915:49645-49664 Msa1431870:CDS 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG - tig0026915:49646-49665 Msa1431870:CDS 35.0%
ATGTTTGTGATCATCCCAAT+AGG - tig0026915:49742-49761 Msa1431870:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG + tig0026915:49759-49778 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG + tig0026915:49760-49779 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG + tig0026915:49841-49860 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG - tig0026915:49884-49903 Msa1431870:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG - tig0026915:49965-49984 Msa1431870:CDS 35.0%
AGGATGTACTGTGAAACATA+AGG + tig0026915:50003-50022 None:intergenic 35.0%
ATGTTGAGTTTGATTCCAGA+AGG + tig0026915:50023-50042 None:intergenic 35.0%
CTATTGCTTGCGAAAATCAA+CGG + tig0026915:50063-50082 None:intergenic 35.0%
!! GTTGATTTTCGCAAGCAATA+GGG - tig0026915:50062-50081 Msa1431870:CDS 35.0%
ATTGTTCCATATGTTAGTCG+CGG + tig0026915:50108-50127 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG - tig0026915:50108-50127 Msa1431870:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG - tig0026915:50146-50165 Msa1431870:intron 35.0%
CTCAGTTGTAGATGAAGAAT+CGG + tig0026915:50312-50331 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG - tig0026915:50355-50374 Msa1431870:intron 35.0%
ATTCAGAACGTGATATGCAA+AGG - tig0026915:50570-50589 Msa1431870:intron 35.0%
AAGGAGATTATCGGAAAACT+AGG - tig0026915:50633-50652 Msa1431870:intron 35.0%
GCTGAATAAGAATGAGGAAT+CGG + tig0026915:50660-50679 None:intergenic 35.0%
! TCCAATTTTCGAAACCCTAT+TGG - tig0026915:50903-50922 Msa1431870:intron 35.0%
TCCAATAGGGTTTCGAAAAT+TGG + tig0026915:50907-50926 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG - tig0026915:50906-50925 Msa1431870:intron 35.0%
! ATTTTCGAAACCCTATTGGA+GGG - tig0026915:50907-50926 Msa1431870:intron 35.0%
!!! AGTGGTTTTTTCATGCCTTT+TGG - tig0026915:50933-50952 Msa1431870:intron 35.0%
!!! GTGGTTTTTTCATGCCTTTT+GGG - tig0026915:50934-50953 Msa1431870:intron 35.0%
CCAAATTCCATGCAACTATT+AGG + tig0026915:51006-51025 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG - tig0026915:51003-51022 Msa1431870:CDS 35.0%
GCATGGAATTTGGATTTCAT+TGG - tig0026915:51013-51032 Msa1431870:CDS 35.0%
TATACACATTCCAACCTCTT+CGG - tig0026915:51042-51061 Msa1431870:five_prime_UTR 35.0%
GATATCTGCGATGATGTTTG+TGG - tig0026915:48823-48842 Msa1431870:three_prime_UTR 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG + tig0026915:48977-48996 None:intergenic 40.0%
! ACCGTGTCTTAAGAGGTTTT+TGG - tig0026915:49629-49648 Msa1431870:CDS 40.0%
!! ATACTTTCTGAGACCGTTGT+GGG - tig0026915:49801-49820 Msa1431870:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG + tig0026915:49855-49874 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG + tig0026915:49856-49875 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG - tig0026915:49883-49902 Msa1431870:CDS 40.0%
TGTTTCACAGTACATCCTTC+TGG - tig0026915:50005-50024 Msa1431870:CDS 40.0%
!!! CGTTGATTTTCGCAAGCAAT+AGG - tig0026915:50061-50080 Msa1431870:CDS 40.0%
CTAACATATGGAACAATCGG+TGG - tig0026915:50111-50130 Msa1431870:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG + tig0026915:50264-50283 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG - tig0026915:50268-50287 Msa1431870:intron 40.0%
ACACAATCAATCTCTTGAGG+TGG - tig0026915:50271-50290 Msa1431870:intron 40.0%
GTTGTAGATGAAGAATCGGA+GGG + tig0026915:50308-50327 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG + tig0026915:50309-50328 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG - tig0026915:50310-50329 Msa1431870:intron 40.0%
TTGACAACAAAAGCTGGAGA+GGG - tig0026915:50361-50380 Msa1431870:intron 40.0%
GGTCAGGGTTTAAGTAATGA+GGG + tig0026915:50548-50567 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG - tig0026915:50547-50566 Msa1431870:intron 40.0%
! TGCATATCACGTTCTGAATC+CGG + tig0026915:50569-50588 None:intergenic 40.0%
TGCACTGCTGAATAAGAATG+AGG + tig0026915:50666-50685 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG - tig0026915:50717-50736 Msa1431870:intron 40.0%
! ATAGGGTCACTCTTTAGAGA+GGG - tig0026915:50824-50843 Msa1431870:intron 40.0%
!! AACCACTTTTCCCTCCAATA+GGG + tig0026915:50920-50939 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG + tig0026915:50921-50940 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG + tig0026915:50995-51014 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG + tig0026915:50996-51015 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG - tig0026915:50996-51015 Msa1431870:CDS 40.0%
AAATCAGTAAGCAACCGAAG+AGG + tig0026915:51059-51078 None:intergenic 40.0%
GATATCTGCGATGATGTTTG+TGG - tig0026915:48823-48842 Msa1431870:three_prime_UTR 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG + tig0026915:48977-48996 None:intergenic 40.0%
! ACCGTGTCTTAAGAGGTTTT+TGG - tig0026915:49629-49648 Msa1431870:CDS 40.0%
!! ATACTTTCTGAGACCGTTGT+GGG - tig0026915:49801-49820 Msa1431870:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG + tig0026915:49855-49874 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG + tig0026915:49856-49875 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG - tig0026915:49883-49902 Msa1431870:CDS 40.0%
TGTTTCACAGTACATCCTTC+TGG - tig0026915:50005-50024 Msa1431870:CDS 40.0%
!!! CGTTGATTTTCGCAAGCAAT+AGG - tig0026915:50061-50080 Msa1431870:CDS 40.0%
CTAACATATGGAACAATCGG+TGG - tig0026915:50111-50130 Msa1431870:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG + tig0026915:50264-50283 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG - tig0026915:50268-50287 Msa1431870:intron 40.0%
ACACAATCAATCTCTTGAGG+TGG - tig0026915:50271-50290 Msa1431870:intron 40.0%
GTTGTAGATGAAGAATCGGA+GGG + tig0026915:50308-50327 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG + tig0026915:50309-50328 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG - tig0026915:50310-50329 Msa1431870:intron 40.0%
TTGACAACAAAAGCTGGAGA+GGG - tig0026915:50361-50380 Msa1431870:intron 40.0%
GGTCAGGGTTTAAGTAATGA+GGG + tig0026915:50548-50567 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG - tig0026915:50547-50566 Msa1431870:intron 40.0%
! TGCATATCACGTTCTGAATC+CGG + tig0026915:50569-50588 None:intergenic 40.0%
TGCACTGCTGAATAAGAATG+AGG + tig0026915:50666-50685 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG - tig0026915:50717-50736 Msa1431870:intron 40.0%
! ATAGGGTCACTCTTTAGAGA+GGG - tig0026915:50824-50843 Msa1431870:intron 40.0%
!! AACCACTTTTCCCTCCAATA+GGG + tig0026915:50920-50939 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG + tig0026915:50921-50940 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG + tig0026915:50995-51014 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG + tig0026915:50996-51015 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG - tig0026915:50996-51015 Msa1431870:CDS 40.0%
AAATCAGTAAGCAACCGAAG+AGG + tig0026915:51059-51078 None:intergenic 40.0%
CTTCTTCTTCACCATGTCTG+AGG - tig0026915:48774-48793 Msa1431870:three_prime_UTR 45.0%
! CAGGTGTATTTTGCGAGGAT+TGG - tig0026915:49699-49718 Msa1431870:CDS 45.0%
!! CATACTTTCTGAGACCGTTG+TGG - tig0026915:49800-49819 Msa1431870:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG + tig0026915:49832-49851 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG + tig0026915:49835-49854 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG - tig0026915:49861-49880 Msa1431870:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG - tig0026915:49888-49907 Msa1431870:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG + tig0026915:49928-49947 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG - tig0026915:50121-50140 Msa1431870:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG - tig0026915:50149-50168 Msa1431870:intron 45.0%
TTGTGTTGGATCAGCTTCTG+AGG - tig0026915:50184-50203 Msa1431870:intron 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG - tig0026915:50193-50212 Msa1431870:intron 45.0%
GAGATTGATTGTGTGTGCAC+TGG + tig0026915:50265-50284 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG + tig0026915:50362-50381 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG - tig0026915:50360-50379 Msa1431870:intron 45.0%
TCTTGTCGGTCTGGTATCTA+TGG + tig0026915:50392-50411 None:intergenic 45.0%
GTGTGCATACCTTGTCTTGT+CGG + tig0026915:50406-50425 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG - tig0026915:50431-50450 Msa1431870:intron 45.0%
CGGTCAGGGTTTAAGTAATG+AGG + tig0026915:50549-50568 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG + tig0026915:50738-50757 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG - tig0026915:50738-50757 Msa1431870:intron 45.0%
! AAGTGGCTGACTCTGAATGT+AGG - tig0026915:50755-50774 Msa1431870:intron 45.0%
! CATAGGGTCACTCTTTAGAG+AGG - tig0026915:50823-50842 Msa1431870:intron 45.0%
AACCCTATTGGAGGGAAAAG+TGG - tig0026915:50915-50934 Msa1431870:intron 45.0%
GGTACAAAAGCTTGCCCAAA+AGG + tig0026915:50951-50970 None:intergenic 45.0%
CTTCTTCTTCACCATGTCTG+AGG - tig0026915:48774-48793 Msa1431870:three_prime_UTR 45.0%
! CAGGTGTATTTTGCGAGGAT+TGG - tig0026915:49699-49718 Msa1431870:CDS 45.0%
!! CATACTTTCTGAGACCGTTG+TGG - tig0026915:49800-49819 Msa1431870:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG + tig0026915:49832-49851 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG + tig0026915:49835-49854 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG - tig0026915:49861-49880 Msa1431870:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG - tig0026915:49888-49907 Msa1431870:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG + tig0026915:49928-49947 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG - tig0026915:50121-50140 Msa1431870:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG - tig0026915:50149-50168 Msa1431870:intron 45.0%
TTGTGTTGGATCAGCTTCTG+AGG - tig0026915:50184-50203 Msa1431870:intron 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG - tig0026915:50193-50212 Msa1431870:intron 45.0%
GAGATTGATTGTGTGTGCAC+TGG + tig0026915:50265-50284 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG + tig0026915:50362-50381 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG - tig0026915:50360-50379 Msa1431870:intron 45.0%
TCTTGTCGGTCTGGTATCTA+TGG + tig0026915:50392-50411 None:intergenic 45.0%
GTGTGCATACCTTGTCTTGT+CGG + tig0026915:50406-50425 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG - tig0026915:50431-50450 Msa1431870:intron 45.0%
CGGTCAGGGTTTAAGTAATG+AGG + tig0026915:50549-50568 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG + tig0026915:50738-50757 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG - tig0026915:50738-50757 Msa1431870:intron 45.0%
! AAGTGGCTGACTCTGAATGT+AGG - tig0026915:50755-50774 Msa1431870:intron 45.0%
! CATAGGGTCACTCTTTAGAG+AGG - tig0026915:50823-50842 Msa1431870:intron 45.0%
AACCCTATTGGAGGGAAAAG+TGG - tig0026915:50915-50934 Msa1431870:intron 45.0%
GGTACAAAAGCTTGCCCAAA+AGG + tig0026915:50951-50970 None:intergenic 45.0%
!!! TTTTTTGTGTGCGCGCGTGT+GGG + tig0026915:48719-48738 None:intergenic 50.0%
!!! TTTTTTTGTGTGCGCGCGTG+TGG + tig0026915:48720-48739 None:intergenic 50.0%
! CGACTCAGGTGTATTTTGCG+AGG - tig0026915:49694-49713 Msa1431870:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG - tig0026915:49887-49906 Msa1431870:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG - tig0026915:49889-49908 Msa1431870:CDS 50.0%
TGTGCAAACTTCATGGGTGG+GGG - tig0026915:49890-49909 Msa1431870:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG - tig0026915:50128-50147 Msa1431870:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG + tig0026915:50159-50178 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG - tig0026915:50170-50189 Msa1431870:intron 50.0%
! GATCAGCTTCTGAGGATAGC+AGG - tig0026915:50192-50211 Msa1431870:intron 50.0%
GATACCAGACCGACAAGACA+AGG - tig0026915:50394-50413 Msa1431870:intron 50.0%
CATACCTTGTCTTGTCGGTC+TGG + tig0026915:50401-50420 None:intergenic 50.0%
GGAATCGCACTCGATCATAG+TGG + tig0026915:50527-50546 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG + tig0026915:50563-50582 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG + tig0026915:50564-50583 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG + tig0026915:51055-51074 None:intergenic 50.0%
!!! TTTTTTGTGTGCGCGCGTGT+GGG + tig0026915:48719-48738 None:intergenic 50.0%
!!! TTTTTTTGTGTGCGCGCGTG+TGG + tig0026915:48720-48739 None:intergenic 50.0%
! CGACTCAGGTGTATTTTGCG+AGG - tig0026915:49694-49713 Msa1431870:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG - tig0026915:49887-49906 Msa1431870:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG - tig0026915:49889-49908 Msa1431870:CDS 50.0%
TGTGCAAACTTCATGGGTGG+GGG - tig0026915:49890-49909 Msa1431870:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG - tig0026915:50128-50147 Msa1431870:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG + tig0026915:50159-50178 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG - tig0026915:50170-50189 Msa1431870:intron 50.0%
! GATCAGCTTCTGAGGATAGC+AGG - tig0026915:50192-50211 Msa1431870:intron 50.0%
GATACCAGACCGACAAGACA+AGG - tig0026915:50394-50413 Msa1431870:intron 50.0%
CATACCTTGTCTTGTCGGTC+TGG + tig0026915:50401-50420 None:intergenic 50.0%
GGAATCGCACTCGATCATAG+TGG + tig0026915:50527-50546 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG + tig0026915:50563-50582 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG + tig0026915:50564-50583 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG + tig0026915:51055-51074 None:intergenic 50.0%
CTGCGATGATGTTTGTGGCC+AGG - tig0026915:48828-48847 Msa1431870:three_prime_UTR 55.0%
AGCGGTGACCGTGTCTTAAG+AGG - tig0026915:49622-49641 Msa1431870:CDS 55.0%
GTCGAGCCGCGACTAACATA+TGG - tig0026915:50099-50118 Msa1431870:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG - tig0026915:50438-50457 Msa1431870:intron 55.0%
CTGCGATGATGTTTGTGGCC+AGG - tig0026915:48828-48847 Msa1431870:three_prime_UTR 55.0%
AGCGGTGACCGTGTCTTAAG+AGG - tig0026915:49622-49641 Msa1431870:CDS 55.0%
GTCGAGCCGCGACTAACATA+TGG - tig0026915:50099-50118 Msa1431870:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG - tig0026915:50438-50457 Msa1431870:intron 55.0%
CGCTGAGCATGTCACGACTC+AGG - tig0026915:49680-49699 Msa1431870:CDS 60.0%
TTCGGCGGAGACTCCCACAA+CGG + tig0026915:49817-49836 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG - tig0026915:50442-50461 Msa1431870:intron 60.0%
CGCTGAGCATGTCACGACTC+AGG - tig0026915:49680-49699 Msa1431870:CDS 60.0%
TTCGGCGGAGACTCCCACAA+CGG + tig0026915:49817-49836 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG - tig0026915:50442-50461 Msa1431870:intron 60.0%
CGTGACATGCTCAGCGCTGC+AGG + tig0026915:49676-49695 None:intergenic 65.0%
CGTGACATGCTCAGCGCTGC+AGG + tig0026915:49676-49695 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026915 gene 48701 51124 48701 ID=Msa1431870;Name=Msa1431870
tig0026915 mRNA 48701 51124 48701 ID=Msa1431870-mRNA-1;Parent=Msa1431870;Name=Msa1431870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=86|0|0.5|1|1|1|2|360|387
tig0026915 exon 48701 50161 48701 ID=Msa1431870-mRNA-1:exon:7772;Parent=Msa1431870-mRNA-1
tig0026915 exon 50976 51124 50976 ID=Msa1431870-mRNA-1:exon:7771;Parent=Msa1431870-mRNA-1
tig0026915 five_prime_UTR 51039 51124 51039 ID=Msa1431870-mRNA-1:five_prime_utr;Parent=Msa1431870-mRNA-1
tig0026915 CDS 50976 51038 50976 ID=Msa1431870-mRNA-1:cds;Parent=Msa1431870-mRNA-1
tig0026915 CDS 49061 50161 49061 ID=Msa1431870-mRNA-1:cds;Parent=Msa1431870-mRNA-1
tig0026915 three_prime_UTR 48701 49060 48701 ID=Msa1431870-mRNA-1:three_prime_utr;Parent=Msa1431870-mRNA-1
Gene Sequence

>Msa1431870

ATGTCTGAGGAGTACTATAATTCGAAAAAAACTGATGATATCTGCGATGATGTTTGTGGCCAGCAGGGAACACCTGCAGCGCTGAGCATGTCACGACTCAGGTGTATTTTGCGAGGATTGGACTTCAAGACTTACATATTTATGTTTGTGATCATCCCAATAGGCGTCTTATTCATCTATTTGCACGGGCAGAAAATCTCATACTTTCTGAGACCGTTGTGGGAGTCTCCGCCGAAGCCGTTTCATGAAATCCCTCACTATTATCACGAGAACGTGTCGATGGAATCTCTGTGCAAACTTCATGGGTGGGGGATTCGCGAATCGCCGAGACGAGTCTTTGATGCTGTTTTGTTTAGCAATGAAGTGGATATGCTTACTATTCGATGGAAAGAAATGTATCCTTATGTTTCACAGTACATCCTTCTGGAATCAAACTCAACATTTACAGGATTCGTCAAACCGTTGATTTTCGCAAGCAATAGGGACAAGTTCAAGTTTGTCGAGCCGCGACTAACATATGGAACAATCGGTGGAAGATTCAGGAGAAAGGAAAATCCGTTTATCGAGGAGGCACGTCAAAGAGTTGTGTTGGATCAGCTTCTGAGGATAGCAGGGATTGAAGATGACGATCTTTTGATAATGTCTGATGTGGATGAGATTCCCAGTGCACACACAATCAATCTCTTGAGGTGGTGTGATGATATCCCTCCGATTCTTCATCTACAACTGAGGAATTACTTGTACTCTTTCGAGTTTTTCCTTGACAACAAAAGCTGGAGAGGGTCAATCCATAGATACCAGACCGACAAGACAAGGTATGCACACTATAGACAGTCTGATCTACTGCTGTCGGATGCTGGCTGGCACTGCAGTTTCTGTTTCCGTCATATCAGTGAATTTGTATTTAAGATGAAAGCGTACAGCCACTATGATCGAGTGCGATTCCCTCATTACTTAAACCCTGACCGGATTCAGAACGTGATATGCAAAGGTGCTGACTTATTCGACATGCTTCCTGAAGAGTATACATTTAAGGAGATTATCGGAAAACTAGGACCGATTCCTCATTCTTATTCAGCAGTGCATCTTCCTGCATTTTTGTTAAATAATGCCGATAGATACAAGTACTTGTTGCCTGGTAACTGCAGAAGAGAAAGTGGCTGA

Protein sequence

>Msa1431870

MSEEYYNSKKTDDICDDVCGQQGTPAALSMSRLRCILRGLDFKTYIFMFVIIPIGVLFIYLHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMESLCKLHGWGIRESPRRVFDAVLFSNEVDMLTIRWKEMYPYVSQYILLESNSTFTGFVKPLIFASNRDKFKFVEPRLTYGTIGGRFRRKENPFIEEARQRVVLDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPPILHLQLRNYLYSFEFFLDNKSWRGSIHRYQTDKTRYAHYRQSDLLLSDAGWHCSFCFRHISEFVFKMKAYSHYDRVRFPHYLNPDRIQNVICKGADLFDMLPEEYTFKEIIGKLGPIPHSYSAVHLPAFLLNNADRYKYLLPGNCRRESG*