AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1014120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014120 MtrunA17_Chr7g0227081 98.966 387 3 1 1 387 1 386 0.0 793
Msa1014120 MtrunA17_Chr8g0381661 77.895 380 83 1 6 385 12 390 0.0 652
Msa1014120 MtrunA17_Chr3g0130111 77.183 355 81 0 31 385 11 365 0.0 605
Msa1014120 MtrunA17_Chr4g0064121 60.000 330 128 2 59 385 33 361 9.97e-154 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014120 AT3G27540.1 77.662 385 85 1 1 385 1 384 0.0 662
Msa1014120 AT5G14480.1 77.003 387 89 0 1 387 1 387 0.0 655
Msa1014120 AT1G12990.1 75.979 383 89 2 5 386 11 391 0.0 629
Msa1014120 AT1G67880.1 75.393 382 89 2 5 385 11 388 0.0 616
Msa1014120 AT3G01620.1 73.454 388 102 1 1 387 1 388 0.0 613
Msa1014120 AT2G13290.2 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa1014120 AT2G13290.1 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa1014120 AT3G26445.1 76.119 67 16 0 210 276 48 114 8.80e-31 114

Find 103 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAGGGTTTCGAAAAT+TGG 0.131488 7_1:+21990793 None:intergenic
CCTAATAGTTGCATGGAATT+TGG 0.131863 7_1:-21990694 Msa1014120:three_prime_UTR
TCCTGAAGAGTATACATTTA+AGG 0.167482 7_1:-21991083 Msa1014120:CDS
TCAAATTTCAAAATCTTATC+AGG 0.211616 7_1:+21990833 None:intergenic
GAATCAAACTCAACATTTAC+AGG 0.238043 7_1:-21991670 Msa1014120:CDS
TCTTGTCGGTCTGGTATCTA+TGG 0.277247 7_1:+21991308 None:intergenic
TGTTTCACAGTACATCCTTC+TGG 0.294348 7_1:-21991692 Msa1014120:CDS
GAAATCTAAAGAAATCAAAA+TGG 0.302602 7_1:+21990591 None:intergenic
GAACAATCGGTGGAAGATTC+AGG 0.321978 7_1:-21991576 Msa1014120:CDS
TAGATGAATAAGACGCCTAT+TGG 0.351138 7_1:+21991940 None:intergenic
TCCTTAAATGTATACTCTTC+AGG 0.352191 7_1:+21991082 None:intergenic
TTCATGCAAACCCAATTATA+AGG 0.361248 7_1:+21990728 None:intergenic
GCATGGAATTTGGATTTCAT+TGG 0.367810 7_1:-21990684 Msa1014120:three_prime_UTR
CCAAATTCCATGCAACTATT+AGG 0.379612 7_1:+21990694 None:intergenic
TGACGTGCCTCCTCGATAAA+CGG 0.388943 7_1:+21991541 None:intergenic
TGCATATCACGTTCTGAATC+CGG 0.391551 7_1:+21991131 None:intergenic
GTGTGCATACCTTGTCTTGT+CGG 0.397316 7_1:+21991294 None:intergenic
TATACATTTAAGGAGATTAT+CGG 0.397622 7_1:-21991073 Msa1014120:CDS
GGTACAAAAGCTTGCCCAAA+AGG 0.403881 7_1:+21990749 None:intergenic
CGTGACATGCTCAGCGCTGC+AGG 0.408769 7_1:+21992024 None:intergenic
GAATCTCTGTGCAAACTTCA+TGG 0.414415 7_1:-21991814 Msa1014120:CDS
AGATGAATAAGACGCCTATT+GGG 0.421213 7_1:+21991941 None:intergenic
ATGTTTGTGATCATCCCAAT+AGG 0.422790 7_1:-21991955 Msa1014120:CDS
GATCTACTGCTGTCGGATGC+TGG 0.423369 7_1:-21991259 Msa1014120:CDS
GTCGAGCCGCGACTAACATA+TGG 0.428067 7_1:-21991598 Msa1014120:CDS
AAATCTAAAGAAATCAAAAT+GGG 0.434036 7_1:+21990592 None:intergenic
ATCACGTTCTGAATCCGGTC+AGG 0.441353 7_1:+21991136 None:intergenic
CTCATTACTTAAACCCTGAC+CGG 0.448929 7_1:-21991150 Msa1014120:CDS
CTTTCTCTTCTGCAGTTACC+AGG 0.453735 7_1:+21990962 None:intergenic
CATACCTTGTCTTGTCGGTC+TGG 0.457355 7_1:+21991299 None:intergenic
CTCAGTTGTAGATGAAGAAT+CGG 0.476003 7_1:+21991388 None:intergenic
ATACTTTCTGAGACCGTTGT+GGG 0.478203 7_1:-21991896 Msa1014120:CDS
TATACACATTCCAACCTCTT+CGG 0.478962 7_1:-21990655 Msa1014120:three_prime_UTR
GATCAGCTTCTGAGGATAGC+AGG 0.479846 7_1:-21991505 Msa1014120:CDS
CTTCTTCTTCACCATGTCTG+AGG 0.482163 7_1:-21992920 Msa1014120:exon
GTCTTATTCATCTATTTGCA+CGG 0.483642 7_1:-21991931 Msa1014120:CDS
AAGGAGATTATCGGAAAACT+AGG 0.496659 7_1:-21991064 Msa1014120:CDS
GGGATTTCATGAAACGGCTT+CGG 0.497964 7_1:+21991865 None:intergenic
CGGTCAGGGTTTAAGTAATG+AGG 0.504563 7_1:+21991151 None:intergenic
TGTGCAAACTTCATGGGTGG+GGG 0.504853 7_1:-21991807 Msa1014120:CDS
CGACTAACATATGGAACAAT+CGG 0.508701 7_1:-21991589 Msa1014120:CDS
CTCTGTGCAAACTTCATGGG+TGG 0.514225 7_1:-21991810 Msa1014120:CDS
CTGCGATGATGTTTGTGGCC+AGG 0.515957 7_1:-21992866 Msa1014120:intron
CTGTGCAAACTTCATGGGTG+GGG 0.519259 7_1:-21991808 Msa1014120:CDS
GGCACGTCAAAGAGTTGTGT+TGG 0.521101 7_1:-21991527 Msa1014120:CDS
AACCCTATTGGAGGGAAAAG+TGG 0.523950 7_1:-21990782 Msa1014120:three_prime_UTR
GCAACTATTAGGCAAGTTGA+GGG 0.526905 7_1:+21990705 None:intergenic
CGGTGGAAGATTCAGGAGAA+AGG 0.526990 7_1:-21991569 Msa1014120:CDS
CGCTGAGCATGTCACGACTC+AGG 0.527124 7_1:-21992017 Msa1014120:CDS
TGCAACTATTAGGCAAGTTG+AGG 0.529302 7_1:+21990704 None:intergenic
GCTGAATAAGAATGAGGAAT+CGG 0.531188 7_1:+21991040 None:intergenic
GAGATTGATTGTGTGTGCAC+TGG 0.534267 7_1:+21991435 None:intergenic
TCTGTGCAAACTTCATGGGT+GGG 0.538769 7_1:-21991809 Msa1014120:CDS
AATCTCTGTGCAAACTTCAT+GGG 0.541036 7_1:-21991813 Msa1014120:CDS
ATACAAATTCACTGATATGA+CGG 0.544679 7_1:+21991215 None:intergenic
CAGTAAGCAACCGAAGAGGT+TGG 0.544723 7_1:+21990645 None:intergenic
CTATTGCTTGCGAAAATCAA+CGG 0.550525 7_1:+21991637 None:intergenic
GATATCTGCGATGATGTTTG+TGG 0.552217 7_1:-21992871 Msa1014120:CDS
TAGTGAGGGATTTCATGAAA+CGG 0.558083 7_1:+21991859 None:intergenic
AGATACAAGTACTTGTTGCC+TGG 0.559240 7_1:-21990980 Msa1014120:CDS
TGGATATGCTTACTATTCGA+TGG 0.561251 7_1:-21991732 Msa1014120:CDS
CATACTTTCTGAGACCGTTG+TGG 0.564319 7_1:-21991897 Msa1014120:CDS
ATGTTGAGTTTGATTCCAGA+AGG 0.569190 7_1:+21991677 None:intergenic
CAACAAGTACTTGTATCTAT+CGG 0.570155 7_1:+21990985 None:intergenic
GGTAACTGCAGAAGAGAAAG+TGG 0.570217 7_1:-21990959 Msa1014120:CDS
CATAGGGTCACTCTTTAGAG+AGG 0.576940 7_1:-21990874 Msa1014120:three_prime_UTR
TCACGTTCTGAATCCGGTCA+GGG 0.579215 7_1:+21991137 None:intergenic
TTATCACGAGAACGTGTCGA+TGG 0.579813 7_1:-21991836 Msa1014120:CDS
ATTTCATGAAACGGCTTCGG+CGG 0.579993 7_1:+21991868 None:intergenic
CTTGACAACAAAAGCTGGAG+AGG 0.583300 7_1:-21991337 Msa1014120:CDS
CAACTTGCCTAATAGTTGCA+TGG 0.583366 7_1:-21990701 Msa1014120:three_prime_UTR
AGGATGTACTGTGAAACATA+AGG 0.583802 7_1:+21991697 None:intergenic
TTGTGTTGGATCAGCTTCTG+AGG 0.586419 7_1:-21991513 Msa1014120:CDS
ATCAGCTTCTGAGGATAGCA+GGG 0.587503 7_1:-21991504 Msa1014120:CDS
TCTTATTCATCTATTTGCAC+GGG 0.591487 7_1:-21991930 Msa1014120:CDS
TTCGAAAATTGGATAAACAG+AGG 0.593280 7_1:+21990804 None:intergenic
AGATTGATTGTGTGTGCACT+GGG 0.593842 7_1:+21991436 None:intergenic
ACAGCATCAAAGACTCGTCT+CGG 0.595137 7_1:+21991772 None:intergenic
TGCACTGCTGAATAAGAATG+AGG 0.596632 7_1:+21991034 None:intergenic
ACAGTCTGATCTACTGCTGT+CGG 0.597913 7_1:-21991266 Msa1014120:CDS
AAGTGGCTGACTCTGAATGT+AGG 0.608682 7_1:-21990942 Msa1014120:exon
CGATTCTTCATCTACAACTG+AGG 0.609395 7_1:-21991387 Msa1014120:CDS
TTCGGCGGAGACTCCCACAA+CGG 0.613707 7_1:+21991883 None:intergenic
ATAGGGTCACTCTTTAGAGA+GGG 0.617972 7_1:-21990873 Msa1014120:three_prime_UTR
AATCTAAAGAAATCAAAATG+GGG 0.630393 7_1:+21990593 None:intergenic
GGAATCGCACTCGATCATAG+TGG 0.631798 7_1:+21991173 None:intergenic
ATTCAGAACGTGATATGCAA+AGG 0.632732 7_1:-21991127 Msa1014120:CDS
GATACCAGACCGACAAGACA+AGG 0.635119 7_1:-21991303 Msa1014120:CDS
GGTCAGGGTTTAAGTAATGA+GGG 0.637006 7_1:+21991152 None:intergenic
AGTTGTAGATGAAGAATCGG+AGG 0.638652 7_1:+21991391 None:intergenic
GTTGTAGATGAAGAATCGGA+GGG 0.639453 7_1:+21991392 None:intergenic
CGTTCTCGTGATAATAGTGA+GGG 0.639469 7_1:+21991845 None:intergenic
ATCTAAAGAAATCAAAATGG+GGG 0.639917 7_1:+21990594 None:intergenic
TTGACAACAAAAGCTGGAGA+GGG 0.640361 7_1:-21991336 Msa1014120:CDS
ATTGTTCCATATGTTAGTCG+CGG 0.643023 7_1:+21991592 None:intergenic
CACACACAATCAATCTCTTG+AGG 0.645085 7_1:-21991429 Msa1014120:CDS
ACGTTCTCGTGATAATAGTG+AGG 0.652321 7_1:+21991844 None:intergenic
ATTATAGTACTCCTCAGACA+TGG 0.659192 7_1:+21992909 None:intergenic
GGAAAATCCGTTTATCGAGG+AGG 0.661999 7_1:-21991548 Msa1014120:CDS
ACACAATCAATCTCTTGAGG+TGG 0.662731 7_1:-21991426 Msa1014120:CDS
AAATCAGTAAGCAACCGAAG+AGG 0.668086 7_1:+21990641 None:intergenic
CTAACATATGGAACAATCGG+TGG 0.687645 7_1:-21991586 Msa1014120:CDS
AAAGGAAAATCCGTTTATCG+AGG 0.694930 7_1:-21991551 Msa1014120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTTTTTTTCC+TGG - chr7_1:21990888-21990907 Msa1014120:three_prime_UTR 10.0%
!!! TTTTTTAATTTTTTTTTCCT+GGG - chr7_1:21990889-21990908 Msa1014120:three_prime_UTR 10.0%
!!! TTTTTTTAATTTTTTTTTCC+TGG - chr7_1:21990888-21990907 Msa1014120:three_prime_UTR 10.0%
!!! TTTTTTAATTTTTTTTTCCT+GGG - chr7_1:21990889-21990908 Msa1014120:three_prime_UTR 10.0%
!!! TTTTTTTTTTTCCTATTTCT+TGG - chr7_1:21990751-21990770 Msa1014120:three_prime_UTR 15.0%
!!! TTTTTTTTTGTTTTGTTGTA+TGG - chr7_1:21990829-21990848 Msa1014120:three_prime_UTR 15.0%
!! ACAAAAAAAAACAACAAATT+TGG + chr7_1:21990940-21990959 None:intergenic 15.0%
!!! TTTGAATTCAATTTTTTTTC+TGG - chr7_1:21990972-21990991 Msa1014120:CDS 15.0%
!!! TTGAATTCAATTTTTTTTCT+GGG - chr7_1:21990973-21990992 Msa1014120:CDS 15.0%
!!! CTATTTTTGTTTTGAATTTA+TGG - chr7_1:21991049-21991068 Msa1014120:CDS 15.0%
!! ATAAAATAAATGACAAAATG+TGG - chr7_1:21991320-21991339 Msa1014120:CDS 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG - chr7_1:21992675-21992694 Msa1014120:intron 15.0%
!!! TTTTTTTTTTTCCTATTTCT+TGG - chr7_1:21990751-21990770 Msa1014120:three_prime_UTR 15.0%
!!! TTTTTTTTTGTTTTGTTGTA+TGG - chr7_1:21990829-21990848 Msa1014120:three_prime_UTR 15.0%
!! ACAAAAAAAAACAACAAATT+TGG + chr7_1:21990940-21990959 None:intergenic 15.0%
!!! TTTGAATTCAATTTTTTTTC+TGG - chr7_1:21990972-21990991 Msa1014120:CDS 15.0%
!!! TTGAATTCAATTTTTTTTCT+GGG - chr7_1:21990973-21990992 Msa1014120:CDS 15.0%
!!! CTATTTTTGTTTTGAATTTA+TGG - chr7_1:21991049-21991068 Msa1014120:CDS 15.0%
!! ATAAAATAAATGACAAAATG+TGG - chr7_1:21991320-21991339 Msa1014120:CDS 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG - chr7_1:21992675-21992694 Msa1014120:intron 15.0%
!! GAAAAAAAAAAAAAAGAACC+TGG + chr7_1:21990743-21990762 None:intergenic 20.0%
!! AAACTTGAAAAAAACCATAA+TGG + chr7_1:21991107-21991126 None:intergenic 20.0%
!!! TTCAAGTTTTTAAACCTATT+AGG - chr7_1:21991118-21991137 Msa1014120:CDS 20.0%
!!! AATTGTGGTTTTTTTTTATG+TGG - chr7_1:21991145-21991164 Msa1014120:CDS 20.0%
!!! TTTTATGTGGTATTAGAATT+AGG - chr7_1:21991158-21991177 Msa1014120:CDS 20.0%
!! TTTATGTGGTATTAGAATTA+GGG - chr7_1:21991159-21991178 Msa1014120:CDS 20.0%
!! CTACAAATGAAAATACAAAT+GGG + chr7_1:21991297-21991316 None:intergenic 20.0%
!! TCTACAAATGAAAATACAAA+TGG + chr7_1:21991298-21991317 None:intergenic 20.0%
!!! AGAAAATTTTGATGATTAAG+CGG - chr7_1:21991495-21991514 Msa1014120:CDS 20.0%
!! TATACATTTAAGGAGATTAT+CGG - chr7_1:21992515-21992534 Msa1014120:intron 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG - chr7_1:21992665-21992684 Msa1014120:intron 20.0%
!! TCAAATTTCAAAATCTTATC+AGG + chr7_1:21992758-21992777 None:intergenic 20.0%
!! GAAAAAAAAAAAAAAGAACC+TGG + chr7_1:21990743-21990762 None:intergenic 20.0%
!! AAACTTGAAAAAAACCATAA+TGG + chr7_1:21991107-21991126 None:intergenic 20.0%
!!! TTCAAGTTTTTAAACCTATT+AGG - chr7_1:21991118-21991137 Msa1014120:CDS 20.0%
!!! AATTGTGGTTTTTTTTTATG+TGG - chr7_1:21991145-21991164 Msa1014120:CDS 20.0%
!!! TTTTATGTGGTATTAGAATT+AGG - chr7_1:21991158-21991177 Msa1014120:CDS 20.0%
!! TTTATGTGGTATTAGAATTA+GGG - chr7_1:21991159-21991178 Msa1014120:CDS 20.0%
!! CTACAAATGAAAATACAAAT+GGG + chr7_1:21991297-21991316 None:intergenic 20.0%
!! TCTACAAATGAAAATACAAA+TGG + chr7_1:21991298-21991317 None:intergenic 20.0%
!!! AGAAAATTTTGATGATTAAG+CGG - chr7_1:21991495-21991514 Msa1014120:CDS 20.0%
!! TATACATTTAAGGAGATTAT+CGG - chr7_1:21992515-21992534 Msa1014120:intron 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG - chr7_1:21992665-21992684 Msa1014120:intron 20.0%
!! TCAAATTTCAAAATCTTATC+AGG + chr7_1:21992758-21992777 None:intergenic 20.0%
!!! ACACTTTTTTTTTTCTTCTG+TGG - chr7_1:21990639-21990658 Msa1014120:three_prime_UTR 25.0%
!!! CACTTTTTTTTTTCTTCTGT+GGG - chr7_1:21990640-21990659 Msa1014120:three_prime_UTR 25.0%
! ACAAAAAACAACCAAGAAAT+AGG + chr7_1:21990765-21990784 None:intergenic 25.0%
!!! TTCTTGGTTGTTTTTTGTTT+TGG - chr7_1:21990767-21990786 Msa1014120:three_prime_UTR 25.0%
!!! TTTTTGTTTTGTTGTATGGT+TGG - chr7_1:21990833-21990852 Msa1014120:three_prime_UTR 25.0%
!!! TTTTGTTTTGTTGTATGGTT+GGG - chr7_1:21990834-21990853 Msa1014120:three_prime_UTR 25.0%
! TTGAATTTATGGATGATTGA+TGG - chr7_1:21991060-21991079 Msa1014120:CDS 25.0%
! TGAATTTATGGATGATTGAT+GGG - chr7_1:21991061-21991080 Msa1014120:CDS 25.0%
!!! TTTTGATTTCTAAGCCATTA+TGG - chr7_1:21991090-21991109 Msa1014120:CDS 25.0%
! AACATGTTACATAGACAAAA+GGG + chr7_1:21991220-21991239 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG + chr7_1:21991221-21991240 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG - chr7_1:21991327-21991346 Msa1014120:CDS 25.0%
!!! TCATTTCATTGTTTGATTTG+AGG - chr7_1:21991373-21991392 Msa1014120:CDS 25.0%
! ATACAAATTCACTGATATGA+CGG + chr7_1:21992376-21992395 None:intergenic 25.0%
! GCATTATTTAACAAAAATGC+AGG + chr7_1:21992584-21992603 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG - chr7_1:21992698-21992717 Msa1014120:intron 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG - chr7_1:21992849-21992868 Msa1014120:intron 25.0%
!! AGCTTTTGTACCTTATAATT+GGG - chr7_1:21992850-21992869 Msa1014120:intron 25.0%
!!! ACACTTTTTTTTTTCTTCTG+TGG - chr7_1:21990639-21990658 Msa1014120:three_prime_UTR 25.0%
!!! CACTTTTTTTTTTCTTCTGT+GGG - chr7_1:21990640-21990659 Msa1014120:three_prime_UTR 25.0%
! ACAAAAAACAACCAAGAAAT+AGG + chr7_1:21990765-21990784 None:intergenic 25.0%
!!! TTCTTGGTTGTTTTTTGTTT+TGG - chr7_1:21990767-21990786 Msa1014120:three_prime_UTR 25.0%
!!! TTTTTGTTTTGTTGTATGGT+TGG - chr7_1:21990833-21990852 Msa1014120:three_prime_UTR 25.0%
!!! TTTTGTTTTGTTGTATGGTT+GGG - chr7_1:21990834-21990853 Msa1014120:three_prime_UTR 25.0%
! TTGAATTTATGGATGATTGA+TGG - chr7_1:21991060-21991079 Msa1014120:CDS 25.0%
! TGAATTTATGGATGATTGAT+GGG - chr7_1:21991061-21991080 Msa1014120:CDS 25.0%
!!! TTTTGATTTCTAAGCCATTA+TGG - chr7_1:21991090-21991109 Msa1014120:CDS 25.0%
! AACATGTTACATAGACAAAA+GGG + chr7_1:21991220-21991239 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG + chr7_1:21991221-21991240 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG - chr7_1:21991327-21991346 Msa1014120:CDS 25.0%
!!! TCATTTCATTGTTTGATTTG+AGG - chr7_1:21991373-21991392 Msa1014120:CDS 25.0%
! ATACAAATTCACTGATATGA+CGG + chr7_1:21992376-21992395 None:intergenic 25.0%
! GCATTATTTAACAAAAATGC+AGG + chr7_1:21992584-21992603 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG - chr7_1:21992698-21992717 Msa1014120:intron 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG - chr7_1:21992849-21992868 Msa1014120:intron 25.0%
!! AGCTTTTGTACCTTATAATT+GGG - chr7_1:21992850-21992869 Msa1014120:intron 25.0%
! ATTAAACTTTTCACAAACCC+AGG + chr7_1:21990909-21990928 None:intergenic 30.0%
CATCAATACAGAGAGATAAA+GGG + chr7_1:21991015-21991034 None:intergenic 30.0%
ACATCAATACAGAGAGATAA+AGG + chr7_1:21991016-21991035 None:intergenic 30.0%
! TATCTCTCTGTATTGATGTT+TGG - chr7_1:21991017-21991036 Msa1014120:CDS 30.0%
AACCTATTAGGATTGAATTG+TGG - chr7_1:21991130-21991149 Msa1014120:CDS 30.0%
AACCACAATTCAATCCTAAT+AGG + chr7_1:21991135-21991154 None:intergenic 30.0%
CATAGACAAAAGGGTTTAAA+AGG + chr7_1:21991211-21991230 None:intergenic 30.0%
!! TTCATTGTTTGATTTGAGGT+TGG - chr7_1:21991377-21991396 Msa1014120:CDS 30.0%
! GTCTTATTCATCTATTTGCA+CGG - chr7_1:21991657-21991676 Msa1014120:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG - chr7_1:21991658-21991677 Msa1014120:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG - chr7_1:21991836-21991855 Msa1014120:CDS 30.0%
GAATCAAACTCAACATTTAC+AGG - chr7_1:21991918-21991937 Msa1014120:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG - chr7_1:21992121-21992140 Msa1014120:intron 30.0%
! TCCTGAAGAGTATACATTTA+AGG - chr7_1:21992505-21992524 Msa1014120:intron 30.0%
TCCTTAAATGTATACTCTTC+AGG + chr7_1:21992509-21992528 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG + chr7_1:21992606-21992625 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG - chr7_1:21992697-21992716 Msa1014120:intron 30.0%
TTCGAAAATTGGATAAACAG+AGG + chr7_1:21992787-21992806 None:intergenic 30.0%
TTCATGCAAACCCAATTATA+AGG + chr7_1:21992863-21992882 None:intergenic 30.0%
! ATTAAACTTTTCACAAACCC+AGG + chr7_1:21990909-21990928 None:intergenic 30.0%
CATCAATACAGAGAGATAAA+GGG + chr7_1:21991015-21991034 None:intergenic 30.0%
ACATCAATACAGAGAGATAA+AGG + chr7_1:21991016-21991035 None:intergenic 30.0%
! TATCTCTCTGTATTGATGTT+TGG - chr7_1:21991017-21991036 Msa1014120:CDS 30.0%
AACCTATTAGGATTGAATTG+TGG - chr7_1:21991130-21991149 Msa1014120:CDS 30.0%
AACCACAATTCAATCCTAAT+AGG + chr7_1:21991135-21991154 None:intergenic 30.0%
CATAGACAAAAGGGTTTAAA+AGG + chr7_1:21991211-21991230 None:intergenic 30.0%
!! TTCATTGTTTGATTTGAGGT+TGG - chr7_1:21991377-21991396 Msa1014120:CDS 30.0%
! GTCTTATTCATCTATTTGCA+CGG - chr7_1:21991657-21991676 Msa1014120:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG - chr7_1:21991658-21991677 Msa1014120:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG - chr7_1:21991836-21991855 Msa1014120:CDS 30.0%
GAATCAAACTCAACATTTAC+AGG - chr7_1:21991918-21991937 Msa1014120:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG - chr7_1:21992121-21992140 Msa1014120:intron 30.0%
! TCCTGAAGAGTATACATTTA+AGG - chr7_1:21992505-21992524 Msa1014120:intron 30.0%
TCCTTAAATGTATACTCTTC+AGG + chr7_1:21992509-21992528 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG + chr7_1:21992606-21992625 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG - chr7_1:21992697-21992716 Msa1014120:intron 30.0%
TTCGAAAATTGGATAAACAG+AGG + chr7_1:21992787-21992806 None:intergenic 30.0%
TTCATGCAAACCCAATTATA+AGG + chr7_1:21992863-21992882 None:intergenic 30.0%
ATTATAGTACTCCTCAGACA+TGG + chr7_1:21990682-21990701 None:intergenic 35.0%
TTATGTTGCCAATGCAAAAC+TGG - chr7_1:21990857-21990876 Msa1014120:three_prime_UTR 35.0%
GAAATCACATGAACAGAAAC+TGG + chr7_1:21991355-21991374 None:intergenic 35.0%
TGATATCATGCAGATGAAGT+TGG - chr7_1:21991415-21991434 Msa1014120:CDS 35.0%
TGCGAAATTAAGCATGTAGT+AGG - chr7_1:21991469-21991488 Msa1014120:CDS 35.0%
ACCAAAAACCTCTTAAGACA+CGG + chr7_1:21991524-21991543 None:intergenic 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG - chr7_1:21991536-21991555 Msa1014120:CDS 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG - chr7_1:21991537-21991556 Msa1014120:CDS 35.0%
ATGTTTGTGATCATCCCAAT+AGG - chr7_1:21991633-21991652 Msa1014120:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG + chr7_1:21991650-21991669 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG + chr7_1:21991651-21991670 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG + chr7_1:21991732-21991751 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG - chr7_1:21991775-21991794 Msa1014120:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG - chr7_1:21991856-21991875 Msa1014120:CDS 35.0%
AGGATGTACTGTGAAACATA+AGG + chr7_1:21991894-21991913 None:intergenic 35.0%
ATGTTGAGTTTGATTCCAGA+AGG + chr7_1:21991914-21991933 None:intergenic 35.0%
CTATTGCTTGCGAAAATCAA+CGG + chr7_1:21991954-21991973 None:intergenic 35.0%
!! GTTGATTTTCGCAAGCAATA+GGG - chr7_1:21991953-21991972 Msa1014120:CDS 35.0%
ATTGTTCCATATGTTAGTCG+CGG + chr7_1:21991999-21992018 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG - chr7_1:21991999-21992018 Msa1014120:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG - chr7_1:21992037-21992056 Msa1014120:intron 35.0%
CTCAGTTGTAGATGAAGAAT+CGG + chr7_1:21992203-21992222 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG - chr7_1:21992246-21992265 Msa1014120:intron 35.0%
ATTCAGAACGTGATATGCAA+AGG - chr7_1:21992461-21992480 Msa1014120:intron 35.0%
AAGGAGATTATCGGAAAACT+AGG - chr7_1:21992524-21992543 Msa1014120:intron 35.0%
GCTGAATAAGAATGAGGAAT+CGG + chr7_1:21992551-21992570 None:intergenic 35.0%
! TCCAATTTTCGAAACCCTAT+TGG - chr7_1:21992794-21992813 Msa1014120:intron 35.0%
TCCAATAGGGTTTCGAAAAT+TGG + chr7_1:21992798-21992817 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG - chr7_1:21992797-21992816 Msa1014120:intron 35.0%
! ATTTTCGAAACCCTATTGGA+GGG - chr7_1:21992798-21992817 Msa1014120:intron 35.0%
!!! AGTGGTTTTTTCATGCCTTT+TGG - chr7_1:21992824-21992843 Msa1014120:intron 35.0%
!!! GTGGTTTTTTCATGCCTTTT+GGG - chr7_1:21992825-21992844 Msa1014120:intron 35.0%
CCAAATTCCATGCAACTATT+AGG + chr7_1:21992897-21992916 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG - chr7_1:21992894-21992913 Msa1014120:CDS 35.0%
GCATGGAATTTGGATTTCAT+TGG - chr7_1:21992904-21992923 Msa1014120:CDS 35.0%
TATACACATTCCAACCTCTT+CGG - chr7_1:21992933-21992952 Msa1014120:five_prime_UTR 35.0%
ATTATAGTACTCCTCAGACA+TGG + chr7_1:21990682-21990701 None:intergenic 35.0%
TTATGTTGCCAATGCAAAAC+TGG - chr7_1:21990857-21990876 Msa1014120:three_prime_UTR 35.0%
GAAATCACATGAACAGAAAC+TGG + chr7_1:21991355-21991374 None:intergenic 35.0%
TGATATCATGCAGATGAAGT+TGG - chr7_1:21991415-21991434 Msa1014120:CDS 35.0%
TGCGAAATTAAGCATGTAGT+AGG - chr7_1:21991469-21991488 Msa1014120:CDS 35.0%
ACCAAAAACCTCTTAAGACA+CGG + chr7_1:21991524-21991543 None:intergenic 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG - chr7_1:21991536-21991555 Msa1014120:CDS 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG - chr7_1:21991537-21991556 Msa1014120:CDS 35.0%
ATGTTTGTGATCATCCCAAT+AGG - chr7_1:21991633-21991652 Msa1014120:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG + chr7_1:21991650-21991669 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG + chr7_1:21991651-21991670 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG + chr7_1:21991732-21991751 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG - chr7_1:21991775-21991794 Msa1014120:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG - chr7_1:21991856-21991875 Msa1014120:CDS 35.0%
AGGATGTACTGTGAAACATA+AGG + chr7_1:21991894-21991913 None:intergenic 35.0%
ATGTTGAGTTTGATTCCAGA+AGG + chr7_1:21991914-21991933 None:intergenic 35.0%
CTATTGCTTGCGAAAATCAA+CGG + chr7_1:21991954-21991973 None:intergenic 35.0%
!! GTTGATTTTCGCAAGCAATA+GGG - chr7_1:21991953-21991972 Msa1014120:CDS 35.0%
ATTGTTCCATATGTTAGTCG+CGG + chr7_1:21991999-21992018 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG - chr7_1:21991999-21992018 Msa1014120:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG - chr7_1:21992037-21992056 Msa1014120:intron 35.0%
CTCAGTTGTAGATGAAGAAT+CGG + chr7_1:21992203-21992222 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG - chr7_1:21992246-21992265 Msa1014120:intron 35.0%
ATTCAGAACGTGATATGCAA+AGG - chr7_1:21992461-21992480 Msa1014120:intron 35.0%
AAGGAGATTATCGGAAAACT+AGG - chr7_1:21992524-21992543 Msa1014120:intron 35.0%
GCTGAATAAGAATGAGGAAT+CGG + chr7_1:21992551-21992570 None:intergenic 35.0%
! TCCAATTTTCGAAACCCTAT+TGG - chr7_1:21992794-21992813 Msa1014120:intron 35.0%
TCCAATAGGGTTTCGAAAAT+TGG + chr7_1:21992798-21992817 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG - chr7_1:21992797-21992816 Msa1014120:intron 35.0%
! ATTTTCGAAACCCTATTGGA+GGG - chr7_1:21992798-21992817 Msa1014120:intron 35.0%
!!! AGTGGTTTTTTCATGCCTTT+TGG - chr7_1:21992824-21992843 Msa1014120:intron 35.0%
!!! GTGGTTTTTTCATGCCTTTT+GGG - chr7_1:21992825-21992844 Msa1014120:intron 35.0%
CCAAATTCCATGCAACTATT+AGG + chr7_1:21992897-21992916 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG - chr7_1:21992894-21992913 Msa1014120:CDS 35.0%
GCATGGAATTTGGATTTCAT+TGG - chr7_1:21992904-21992923 Msa1014120:CDS 35.0%
TATACACATTCCAACCTCTT+CGG - chr7_1:21992933-21992952 Msa1014120:five_prime_UTR 35.0%
GATATCTGCGATGATGTTTG+TGG - chr7_1:21990717-21990736 Msa1014120:three_prime_UTR 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG + chr7_1:21990868-21990887 None:intergenic 40.0%
! ACCGTGTCTTAAGAGGTTTT+TGG - chr7_1:21991520-21991539 Msa1014120:CDS 40.0%
!! ATACTTTCTGAGACCGTTGT+GGG - chr7_1:21991692-21991711 Msa1014120:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG + chr7_1:21991746-21991765 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG + chr7_1:21991747-21991766 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG - chr7_1:21991774-21991793 Msa1014120:CDS 40.0%
TGTTTCACAGTACATCCTTC+TGG - chr7_1:21991896-21991915 Msa1014120:CDS 40.0%
!!! CGTTGATTTTCGCAAGCAAT+AGG - chr7_1:21991952-21991971 Msa1014120:CDS 40.0%
CTAACATATGGAACAATCGG+TGG - chr7_1:21992002-21992021 Msa1014120:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG + chr7_1:21992155-21992174 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG - chr7_1:21992159-21992178 Msa1014120:intron 40.0%
ACACAATCAATCTCTTGAGG+TGG - chr7_1:21992162-21992181 Msa1014120:intron 40.0%
GTTGTAGATGAAGAATCGGA+GGG + chr7_1:21992199-21992218 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG + chr7_1:21992200-21992219 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG - chr7_1:21992201-21992220 Msa1014120:intron 40.0%
TTGACAACAAAAGCTGGAGA+GGG - chr7_1:21992252-21992271 Msa1014120:intron 40.0%
GGTCAGGGTTTAAGTAATGA+GGG + chr7_1:21992439-21992458 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG - chr7_1:21992438-21992457 Msa1014120:intron 40.0%
! TGCATATCACGTTCTGAATC+CGG + chr7_1:21992460-21992479 None:intergenic 40.0%
TGCACTGCTGAATAAGAATG+AGG + chr7_1:21992557-21992576 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG - chr7_1:21992608-21992627 Msa1014120:intron 40.0%
! ATAGGGTCACTCTTTAGAGA+GGG - chr7_1:21992715-21992734 Msa1014120:intron 40.0%
!! AACCACTTTTCCCTCCAATA+GGG + chr7_1:21992811-21992830 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG + chr7_1:21992812-21992831 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG + chr7_1:21992886-21992905 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG + chr7_1:21992887-21992906 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG - chr7_1:21992887-21992906 Msa1014120:CDS 40.0%
AAATCAGTAAGCAACCGAAG+AGG + chr7_1:21992950-21992969 None:intergenic 40.0%
GATATCTGCGATGATGTTTG+TGG - chr7_1:21990717-21990736 Msa1014120:three_prime_UTR 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG + chr7_1:21990868-21990887 None:intergenic 40.0%
! ACCGTGTCTTAAGAGGTTTT+TGG - chr7_1:21991520-21991539 Msa1014120:CDS 40.0%
!! ATACTTTCTGAGACCGTTGT+GGG - chr7_1:21991692-21991711 Msa1014120:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG + chr7_1:21991746-21991765 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG + chr7_1:21991747-21991766 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG - chr7_1:21991774-21991793 Msa1014120:CDS 40.0%
TGTTTCACAGTACATCCTTC+TGG - chr7_1:21991896-21991915 Msa1014120:CDS 40.0%
!!! CGTTGATTTTCGCAAGCAAT+AGG - chr7_1:21991952-21991971 Msa1014120:CDS 40.0%
CTAACATATGGAACAATCGG+TGG - chr7_1:21992002-21992021 Msa1014120:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG + chr7_1:21992155-21992174 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG - chr7_1:21992159-21992178 Msa1014120:intron 40.0%
ACACAATCAATCTCTTGAGG+TGG - chr7_1:21992162-21992181 Msa1014120:intron 40.0%
GTTGTAGATGAAGAATCGGA+GGG + chr7_1:21992199-21992218 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG + chr7_1:21992200-21992219 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG - chr7_1:21992201-21992220 Msa1014120:intron 40.0%
TTGACAACAAAAGCTGGAGA+GGG - chr7_1:21992252-21992271 Msa1014120:intron 40.0%
GGTCAGGGTTTAAGTAATGA+GGG + chr7_1:21992439-21992458 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG - chr7_1:21992438-21992457 Msa1014120:intron 40.0%
! TGCATATCACGTTCTGAATC+CGG + chr7_1:21992460-21992479 None:intergenic 40.0%
TGCACTGCTGAATAAGAATG+AGG + chr7_1:21992557-21992576 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG - chr7_1:21992608-21992627 Msa1014120:intron 40.0%
! ATAGGGTCACTCTTTAGAGA+GGG - chr7_1:21992715-21992734 Msa1014120:intron 40.0%
!! AACCACTTTTCCCTCCAATA+GGG + chr7_1:21992811-21992830 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG + chr7_1:21992812-21992831 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG + chr7_1:21992886-21992905 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG + chr7_1:21992887-21992906 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG - chr7_1:21992887-21992906 Msa1014120:CDS 40.0%
AAATCAGTAAGCAACCGAAG+AGG + chr7_1:21992950-21992969 None:intergenic 40.0%
CTTCTTCTTCACCATGTCTG+AGG - chr7_1:21990668-21990687 Msa1014120:three_prime_UTR 45.0%
! CAGGTGTATTTTGCGAGGAT+TGG - chr7_1:21991590-21991609 Msa1014120:CDS 45.0%
!! CATACTTTCTGAGACCGTTG+TGG - chr7_1:21991691-21991710 Msa1014120:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG + chr7_1:21991723-21991742 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG + chr7_1:21991726-21991745 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG - chr7_1:21991752-21991771 Msa1014120:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG - chr7_1:21991779-21991798 Msa1014120:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG + chr7_1:21991819-21991838 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG - chr7_1:21992012-21992031 Msa1014120:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG - chr7_1:21992040-21992059 Msa1014120:intron 45.0%
TTGTGTTGGATCAGCTTCTG+AGG - chr7_1:21992075-21992094 Msa1014120:intron 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG - chr7_1:21992084-21992103 Msa1014120:intron 45.0%
GAGATTGATTGTGTGTGCAC+TGG + chr7_1:21992156-21992175 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG + chr7_1:21992253-21992272 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG - chr7_1:21992251-21992270 Msa1014120:intron 45.0%
TCTTGTCGGTCTGGTATCTA+TGG + chr7_1:21992283-21992302 None:intergenic 45.0%
GTGTGCATACCTTGTCTTGT+CGG + chr7_1:21992297-21992316 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG - chr7_1:21992322-21992341 Msa1014120:intron 45.0%
CGGTCAGGGTTTAAGTAATG+AGG + chr7_1:21992440-21992459 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG + chr7_1:21992629-21992648 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG - chr7_1:21992629-21992648 Msa1014120:intron 45.0%
! AAGTGGCTGACTCTGAATGT+AGG - chr7_1:21992646-21992665 Msa1014120:intron 45.0%
! CATAGGGTCACTCTTTAGAG+AGG - chr7_1:21992714-21992733 Msa1014120:intron 45.0%
AACCCTATTGGAGGGAAAAG+TGG - chr7_1:21992806-21992825 Msa1014120:intron 45.0%
GGTACAAAAGCTTGCCCAAA+AGG + chr7_1:21992842-21992861 None:intergenic 45.0%
CTTCTTCTTCACCATGTCTG+AGG - chr7_1:21990668-21990687 Msa1014120:three_prime_UTR 45.0%
! CAGGTGTATTTTGCGAGGAT+TGG - chr7_1:21991590-21991609 Msa1014120:CDS 45.0%
!! CATACTTTCTGAGACCGTTG+TGG - chr7_1:21991691-21991710 Msa1014120:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG + chr7_1:21991723-21991742 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG + chr7_1:21991726-21991745 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG - chr7_1:21991752-21991771 Msa1014120:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG - chr7_1:21991779-21991798 Msa1014120:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG + chr7_1:21991819-21991838 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG - chr7_1:21992012-21992031 Msa1014120:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG - chr7_1:21992040-21992059 Msa1014120:intron 45.0%
TTGTGTTGGATCAGCTTCTG+AGG - chr7_1:21992075-21992094 Msa1014120:intron 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG - chr7_1:21992084-21992103 Msa1014120:intron 45.0%
GAGATTGATTGTGTGTGCAC+TGG + chr7_1:21992156-21992175 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG + chr7_1:21992253-21992272 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG - chr7_1:21992251-21992270 Msa1014120:intron 45.0%
TCTTGTCGGTCTGGTATCTA+TGG + chr7_1:21992283-21992302 None:intergenic 45.0%
GTGTGCATACCTTGTCTTGT+CGG + chr7_1:21992297-21992316 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG - chr7_1:21992322-21992341 Msa1014120:intron 45.0%
CGGTCAGGGTTTAAGTAATG+AGG + chr7_1:21992440-21992459 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG + chr7_1:21992629-21992648 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG - chr7_1:21992629-21992648 Msa1014120:intron 45.0%
! AAGTGGCTGACTCTGAATGT+AGG - chr7_1:21992646-21992665 Msa1014120:intron 45.0%
! CATAGGGTCACTCTTTAGAG+AGG - chr7_1:21992714-21992733 Msa1014120:intron 45.0%
AACCCTATTGGAGGGAAAAG+TGG - chr7_1:21992806-21992825 Msa1014120:intron 45.0%
GGTACAAAAGCTTGCCCAAA+AGG + chr7_1:21992842-21992861 None:intergenic 45.0%
!!! TTTTTTGTGTGCGCGCGTGT+GGG + chr7_1:21990613-21990632 None:intergenic 50.0%
!!! TTTTTTTGTGTGCGCGCGTG+TGG + chr7_1:21990614-21990633 None:intergenic 50.0%
! CGACTCAGGTGTATTTTGCG+AGG - chr7_1:21991585-21991604 Msa1014120:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG - chr7_1:21991778-21991797 Msa1014120:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG - chr7_1:21991780-21991799 Msa1014120:CDS 50.0%
TGTGCAAACTTCATGGGTGG+GGG - chr7_1:21991781-21991800 Msa1014120:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG - chr7_1:21992019-21992038 Msa1014120:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG + chr7_1:21992050-21992069 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG - chr7_1:21992061-21992080 Msa1014120:intron 50.0%
! GATCAGCTTCTGAGGATAGC+AGG - chr7_1:21992083-21992102 Msa1014120:intron 50.0%
GATACCAGACCGACAAGACA+AGG - chr7_1:21992285-21992304 Msa1014120:intron 50.0%
CATACCTTGTCTTGTCGGTC+TGG + chr7_1:21992292-21992311 None:intergenic 50.0%
GGAATCGCACTCGATCATAG+TGG + chr7_1:21992418-21992437 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG + chr7_1:21992454-21992473 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG + chr7_1:21992455-21992474 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG + chr7_1:21992946-21992965 None:intergenic 50.0%
!!! TTTTTTGTGTGCGCGCGTGT+GGG + chr7_1:21990613-21990632 None:intergenic 50.0%
!!! TTTTTTTGTGTGCGCGCGTG+TGG + chr7_1:21990614-21990633 None:intergenic 50.0%
! CGACTCAGGTGTATTTTGCG+AGG - chr7_1:21991585-21991604 Msa1014120:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG - chr7_1:21991778-21991797 Msa1014120:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG - chr7_1:21991780-21991799 Msa1014120:CDS 50.0%
TGTGCAAACTTCATGGGTGG+GGG - chr7_1:21991781-21991800 Msa1014120:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG - chr7_1:21992019-21992038 Msa1014120:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG + chr7_1:21992050-21992069 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG - chr7_1:21992061-21992080 Msa1014120:intron 50.0%
! GATCAGCTTCTGAGGATAGC+AGG - chr7_1:21992083-21992102 Msa1014120:intron 50.0%
GATACCAGACCGACAAGACA+AGG - chr7_1:21992285-21992304 Msa1014120:intron 50.0%
CATACCTTGTCTTGTCGGTC+TGG + chr7_1:21992292-21992311 None:intergenic 50.0%
GGAATCGCACTCGATCATAG+TGG + chr7_1:21992418-21992437 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG + chr7_1:21992454-21992473 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG + chr7_1:21992455-21992474 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG + chr7_1:21992946-21992965 None:intergenic 50.0%
CTGCGATGATGTTTGTGGCC+AGG - chr7_1:21990722-21990741 Msa1014120:three_prime_UTR 55.0%
AGCGGTGACCGTGTCTTAAG+AGG - chr7_1:21991513-21991532 Msa1014120:CDS 55.0%
GTCGAGCCGCGACTAACATA+TGG - chr7_1:21991990-21992009 Msa1014120:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG - chr7_1:21992329-21992348 Msa1014120:intron 55.0%
CTGCGATGATGTTTGTGGCC+AGG - chr7_1:21990722-21990741 Msa1014120:three_prime_UTR 55.0%
AGCGGTGACCGTGTCTTAAG+AGG - chr7_1:21991513-21991532 Msa1014120:CDS 55.0%
GTCGAGCCGCGACTAACATA+TGG - chr7_1:21991990-21992009 Msa1014120:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG - chr7_1:21992329-21992348 Msa1014120:intron 55.0%
CGCTGAGCATGTCACGACTC+AGG - chr7_1:21991571-21991590 Msa1014120:CDS 60.0%
TTCGGCGGAGACTCCCACAA+CGG + chr7_1:21991708-21991727 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG - chr7_1:21992333-21992352 Msa1014120:intron 60.0%
CGCTGAGCATGTCACGACTC+AGG - chr7_1:21991571-21991590 Msa1014120:CDS 60.0%
TTCGGCGGAGACTCCCACAA+CGG + chr7_1:21991708-21991727 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG - chr7_1:21992333-21992352 Msa1014120:intron 60.0%
CGTGACATGCTCAGCGCTGC+AGG + chr7_1:21991567-21991586 None:intergenic 65.0%
CGTGACATGCTCAGCGCTGC+AGG + chr7_1:21991567-21991586 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 21990595 21993015 21990595 ID=Msa1014120;Name=Msa1014120
chr7_1 mRNA 21990595 21993015 21990595 ID=Msa1014120-mRNA-1;Parent=Msa1014120;Name=Msa1014120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86|0|0.5|1|1|1|2|360|387
chr7_1 exon 21990595 21992055 21990595 ID=Msa1014120-mRNA-1:exon:5248;Parent=Msa1014120-mRNA-1
chr7_1 exon 21992867 21993015 21992867 ID=Msa1014120-mRNA-1:exon:5247;Parent=Msa1014120-mRNA-1
chr7_1 five_prime_UTR 21992930 21993015 21992930 ID=Msa1014120-mRNA-1:five_prime_utr;Parent=Msa1014120-mRNA-1
chr7_1 CDS 21992867 21992929 21992867 ID=Msa1014120-mRNA-1:cds;Parent=Msa1014120-mRNA-1
chr7_1 CDS 21990955 21992055 21990955 ID=Msa1014120-mRNA-1:cds;Parent=Msa1014120-mRNA-1
chr7_1 three_prime_UTR 21990595 21990954 21990595 ID=Msa1014120-mRNA-1:three_prime_utr;Parent=Msa1014120-mRNA-1
Gene Sequence

>Msa1014120

ATGTCTGAGGAGTACTATAATTCGAAAAAAACTGATGATATCTGCGATGATGTTTGTGGCCAGCAGGGAACACCTGCAGCGCTGAGCATGTCACGACTCAGGTGTATTTTGCGAGGATTGGACTTCAAGACTTACATATTTATGTTTGTGATCATCCCAATAGGCGTCTTATTCATCTATTTGCACGGGCAGAAAATCTCATACTTTCTGAGACCGTTGTGGGAGTCTCCGCCGAAGCCGTTTCATGAAATCCCTCACTATTATCACGAGAACGTGTCGATGGAATCTCTGTGCAAACTTCATGGGTGGGGGATTCGCGAATCGCCGAGACGAGTCTTTGATGCTGTTTTGTTTAGCAATGAAGTGGATATGCTTACTATTCGATGGAAAGAAATGTATCCTTATGTTTCACAGTACATCCTTCTGGAATCAAACTCAACATTTACAGGATTCGTCAAACCGTTGATTTTCGCAAGCAATAGGGACAAGTTCAAGTTTGTCGAGCCGCGACTAACATATGGAACAATCGGTGGAAGATTCAGGAGAAAGGAAAATCCGTTTATCGAGGAGGCACGTCAAAGAGTTGTGTTGGATCAGCTTCTGAGGATAGCAGGGATTGAAGATGACGATCTTTTGATAATGTCTGATGTGGATGAGATTCCCAGTGCACACACAATCAATCTCTTGAGGTGGTGTGATGATATCCCTCCGATTCTTCATCTACAACTGAGGAATTACTTGTACTCTTTCGAGTTTTTCCTTGACAACAAAAGCTGGAGAGGGTCAATCCATAGATACCAGACCGACAAGACAAGGTATGCACACTATAGACAGTCTGATCTACTGCTGTCGGATGCTGGCTGGCACTGCAGTTTCTGTTTCCGTCATATCAGTGAATTTGTATTTAAGATGAAAGCGTACAGCCACTATGATCGAGTGCGATTCCCTCATTACTTAAACCCTGACCGGATTCAGAACGTGATATGCAAAGGTGCTGACTTATTCGACATGCTTCCTGAAGAGTATACATTTAAGGAGATTATCGGAAAACTAGGACCGATTCCTCATTCTTATTCAGCAGTGCATCTTCCTGCATTTTTGTTAAATAATGCCGATAGATACAAGTACTTGTTGCCTGGTAACTGCAGAAGAGAAAGTGGCTGA

Protein sequence

>Msa1014120

MSEEYYNSKKTDDICDDVCGQQGTPAALSMSRLRCILRGLDFKTYIFMFVIIPIGVLFIYLHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMESLCKLHGWGIRESPRRVFDAVLFSNEVDMLTIRWKEMYPYVSQYILLESNSTFTGFVKPLIFASNRDKFKFVEPRLTYGTIGGRFRRKENPFIEEARQRVVLDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPPILHLQLRNYLYSFEFFLDNKSWRGSIHRYQTDKTRYAHYRQSDLLLSDAGWHCSFCFRHISEFVFKMKAYSHYDRVRFPHYLNPDRIQNVICKGADLFDMLPEEYTFKEIIGKLGPIPHSYSAVHLPAFLLNNADRYKYLLPGNCRRESG*