AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748050 MtrunA17_Chr7g0227081 98.966 387 3 1 1 387 1 386 0.0 793
Msa0748050 MtrunA17_Chr8g0381661 77.895 380 83 1 6 385 12 390 0.0 652
Msa0748050 MtrunA17_Chr3g0130111 77.183 355 81 0 31 385 11 365 0.0 605
Msa0748050 MtrunA17_Chr4g0064121 60.000 330 128 2 59 385 33 361 9.97e-154 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748050 AT3G27540.1 77.662 385 85 1 1 385 1 384 0.0 662
Msa0748050 AT5G14480.1 77.003 387 89 0 1 387 1 387 0.0 655
Msa0748050 AT1G12990.1 75.979 383 89 2 5 386 11 391 0.0 629
Msa0748050 AT1G67880.1 75.393 382 89 2 5 385 11 388 0.0 616
Msa0748050 AT3G01620.1 73.454 388 102 1 1 387 1 388 0.0 613
Msa0748050 AT2G13290.2 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa0748050 AT2G13290.1 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa0748050 AT3G26445.1 76.119 67 16 0 210 276 48 114 8.80e-31 114

Find 103 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAGGGTTTCGAAAAT+TGG 0.131488 5_2:-1054359 None:intergenic
CCTAATAGTTGCATGGAATT+TGG 0.131863 5_2:+1054458 Msa0748050:three_prime_UTR
TCCTGAAGAGTATACATTTA+AGG 0.167482 5_2:+1054069 Msa0748050:CDS
TCAAATTTCAAAATCTTATC+AGG 0.211616 5_2:-1054319 None:intergenic
GAATCAAACTCAACATTTAC+AGG 0.238043 5_2:+1053482 Msa0748050:CDS
TCTTGTCGGTCTGGTATCTA+TGG 0.277247 5_2:-1053844 None:intergenic
TGTTTCACAGTACATCCTTC+TGG 0.294348 5_2:+1053460 Msa0748050:CDS
GAAATCTAAAGAAATCAAAA+TGG 0.302602 5_2:-1054561 None:intergenic
GAACAATCGGTGGAAGATTC+AGG 0.321978 5_2:+1053576 Msa0748050:CDS
TAGATGAATAAGACGCCTAT+TGG 0.351138 5_2:-1053212 None:intergenic
TCCTTAAATGTATACTCTTC+AGG 0.352191 5_2:-1054070 None:intergenic
TTCATGCAAACCCAATTATA+AGG 0.361248 5_2:-1054424 None:intergenic
GCATGGAATTTGGATTTCAT+TGG 0.367810 5_2:+1054468 Msa0748050:three_prime_UTR
CCAAATTCCATGCAACTATT+AGG 0.379612 5_2:-1054458 None:intergenic
TGACGTGCCTCCTCGATAAA+CGG 0.388943 5_2:-1053611 None:intergenic
TGCATATCACGTTCTGAATC+CGG 0.391551 5_2:-1054021 None:intergenic
GTGTGCATACCTTGTCTTGT+CGG 0.397316 5_2:-1053858 None:intergenic
TATACATTTAAGGAGATTAT+CGG 0.397622 5_2:+1054079 Msa0748050:CDS
GGTACAAAAGCTTGCCCAAA+AGG 0.403881 5_2:-1054403 None:intergenic
CGTGACATGCTCAGCGCTGC+AGG 0.408769 5_2:-1053128 None:intergenic
GAATCTCTGTGCAAACTTCA+TGG 0.414415 5_2:+1053338 Msa0748050:CDS
AGATGAATAAGACGCCTATT+GGG 0.421213 5_2:-1053211 None:intergenic
ATGTTTGTGATCATCCCAAT+AGG 0.422790 5_2:+1053197 Msa0748050:CDS
GATCTACTGCTGTCGGATGC+TGG 0.423369 5_2:+1053893 Msa0748050:CDS
GTCGAGCCGCGACTAACATA+TGG 0.428067 5_2:+1053554 Msa0748050:CDS
AAATCTAAAGAAATCAAAAT+GGG 0.434036 5_2:-1054560 None:intergenic
ATCACGTTCTGAATCCGGTC+AGG 0.441353 5_2:-1054016 None:intergenic
CTCATTACTTAAACCCTGAC+CGG 0.448929 5_2:+1054002 Msa0748050:CDS
CTTTCTCTTCTGCAGTTACC+AGG 0.453735 5_2:-1054190 None:intergenic
CATACCTTGTCTTGTCGGTC+TGG 0.457355 5_2:-1053853 None:intergenic
CTCAGTTGTAGATGAAGAAT+CGG 0.476003 5_2:-1053764 None:intergenic
ATACTTTCTGAGACCGTTGT+GGG 0.478203 5_2:+1053256 Msa0748050:CDS
TATACACATTCCAACCTCTT+CGG 0.478962 5_2:+1054497 Msa0748050:three_prime_UTR
GATCAGCTTCTGAGGATAGC+AGG 0.479846 5_2:+1053647 Msa0748050:CDS
CTTCTTCTTCACCATGTCTG+AGG 0.482163 5_2:+1052231 Msa0748050:exon
GTCTTATTCATCTATTTGCA+CGG 0.483642 5_2:+1053221 Msa0748050:CDS
AAGGAGATTATCGGAAAACT+AGG 0.496659 5_2:+1054088 Msa0748050:CDS
GGGATTTCATGAAACGGCTT+CGG 0.497964 5_2:-1053287 None:intergenic
CGGTCAGGGTTTAAGTAATG+AGG 0.504563 5_2:-1054001 None:intergenic
TGTGCAAACTTCATGGGTGG+GGG 0.504853 5_2:+1053345 Msa0748050:CDS
CGACTAACATATGGAACAAT+CGG 0.508701 5_2:+1053563 Msa0748050:CDS
CTCTGTGCAAACTTCATGGG+TGG 0.514225 5_2:+1053342 Msa0748050:CDS
CTGCGATGATGTTTGTGGCC+AGG 0.515957 5_2:+1052285 Msa0748050:CDS
CTGTGCAAACTTCATGGGTG+GGG 0.519259 5_2:+1053344 Msa0748050:CDS
GGCACGTCAAAGAGTTGTGT+TGG 0.521101 5_2:+1053625 Msa0748050:CDS
AACCCTATTGGAGGGAAAAG+TGG 0.523950 5_2:+1054370 Msa0748050:three_prime_UTR
GCAACTATTAGGCAAGTTGA+GGG 0.526905 5_2:-1054447 None:intergenic
CGGTGGAAGATTCAGGAGAA+AGG 0.526990 5_2:+1053583 Msa0748050:CDS
CGCTGAGCATGTCACGACTC+AGG 0.527124 5_2:+1053135 Msa0748050:CDS
TGCAACTATTAGGCAAGTTG+AGG 0.529302 5_2:-1054448 None:intergenic
GCTGAATAAGAATGAGGAAT+CGG 0.531188 5_2:-1054112 None:intergenic
GAGATTGATTGTGTGTGCAC+TGG 0.534267 5_2:-1053717 None:intergenic
TCTGTGCAAACTTCATGGGT+GGG 0.538769 5_2:+1053343 Msa0748050:CDS
AATCTCTGTGCAAACTTCAT+GGG 0.541036 5_2:+1053339 Msa0748050:CDS
ATACAAATTCACTGATATGA+CGG 0.544679 5_2:-1053937 None:intergenic
CAGTAAGCAACCGAAGAGGT+TGG 0.544723 5_2:-1054507 None:intergenic
CTATTGCTTGCGAAAATCAA+CGG 0.550525 5_2:-1053515 None:intergenic
GATATCTGCGATGATGTTTG+TGG 0.552217 5_2:+1052280 Msa0748050:CDS
TAGTGAGGGATTTCATGAAA+CGG 0.558083 5_2:-1053293 None:intergenic
AGATACAAGTACTTGTTGCC+TGG 0.559240 5_2:+1054172 Msa0748050:CDS
TGGATATGCTTACTATTCGA+TGG 0.561251 5_2:+1053420 Msa0748050:CDS
CATACTTTCTGAGACCGTTG+TGG 0.564319 5_2:+1053255 Msa0748050:CDS
ATGTTGAGTTTGATTCCAGA+AGG 0.569190 5_2:-1053475 None:intergenic
CAACAAGTACTTGTATCTAT+CGG 0.570155 5_2:-1054167 None:intergenic
GGTAACTGCAGAAGAGAAAG+TGG 0.570217 5_2:+1054193 Msa0748050:CDS
CATAGGGTCACTCTTTAGAG+AGG 0.576940 5_2:+1054278 Msa0748050:three_prime_UTR
TCACGTTCTGAATCCGGTCA+GGG 0.579215 5_2:-1054015 None:intergenic
TTATCACGAGAACGTGTCGA+TGG 0.579813 5_2:+1053316 Msa0748050:CDS
ATTTCATGAAACGGCTTCGG+CGG 0.579993 5_2:-1053284 None:intergenic
CTTGACAACAAAAGCTGGAG+AGG 0.583300 5_2:+1053815 Msa0748050:CDS
CAACTTGCCTAATAGTTGCA+TGG 0.583366 5_2:+1054451 Msa0748050:three_prime_UTR
AGGATGTACTGTGAAACATA+AGG 0.583802 5_2:-1053455 None:intergenic
TTGTGTTGGATCAGCTTCTG+AGG 0.586419 5_2:+1053639 Msa0748050:CDS
ATCAGCTTCTGAGGATAGCA+GGG 0.587503 5_2:+1053648 Msa0748050:CDS
TCTTATTCATCTATTTGCAC+GGG 0.591487 5_2:+1053222 Msa0748050:CDS
TTCGAAAATTGGATAAACAG+AGG 0.593280 5_2:-1054348 None:intergenic
AGATTGATTGTGTGTGCACT+GGG 0.593842 5_2:-1053716 None:intergenic
ACAGCATCAAAGACTCGTCT+CGG 0.595137 5_2:-1053380 None:intergenic
TGCACTGCTGAATAAGAATG+AGG 0.596632 5_2:-1054118 None:intergenic
ACAGTCTGATCTACTGCTGT+CGG 0.597913 5_2:+1053886 Msa0748050:CDS
AAGTGGCTGACTCTGAATGT+AGG 0.608682 5_2:+1054210 Msa0748050:exon
CGATTCTTCATCTACAACTG+AGG 0.609395 5_2:+1053765 Msa0748050:CDS
TTCGGCGGAGACTCCCACAA+CGG 0.613707 5_2:-1053269 None:intergenic
ATAGGGTCACTCTTTAGAGA+GGG 0.617972 5_2:+1054279 Msa0748050:three_prime_UTR
AATCTAAAGAAATCAAAATG+GGG 0.630393 5_2:-1054559 None:intergenic
GGAATCGCACTCGATCATAG+TGG 0.631798 5_2:-1053979 None:intergenic
ATTCAGAACGTGATATGCAA+AGG 0.632732 5_2:+1054025 Msa0748050:CDS
GATACCAGACCGACAAGACA+AGG 0.635119 5_2:+1053849 Msa0748050:CDS
GGTCAGGGTTTAAGTAATGA+GGG 0.637006 5_2:-1054000 None:intergenic
AGTTGTAGATGAAGAATCGG+AGG 0.638652 5_2:-1053761 None:intergenic
GTTGTAGATGAAGAATCGGA+GGG 0.639453 5_2:-1053760 None:intergenic
CGTTCTCGTGATAATAGTGA+GGG 0.639469 5_2:-1053307 None:intergenic
ATCTAAAGAAATCAAAATGG+GGG 0.639917 5_2:-1054558 None:intergenic
TTGACAACAAAAGCTGGAGA+GGG 0.640361 5_2:+1053816 Msa0748050:CDS
ATTGTTCCATATGTTAGTCG+CGG 0.643023 5_2:-1053560 None:intergenic
CACACACAATCAATCTCTTG+AGG 0.645085 5_2:+1053723 Msa0748050:CDS
ACGTTCTCGTGATAATAGTG+AGG 0.652321 5_2:-1053308 None:intergenic
ATTATAGTACTCCTCAGACA+TGG 0.659192 5_2:-1052242 None:intergenic
GGAAAATCCGTTTATCGAGG+AGG 0.661999 5_2:+1053604 Msa0748050:CDS
ACACAATCAATCTCTTGAGG+TGG 0.662731 5_2:+1053726 Msa0748050:CDS
AAATCAGTAAGCAACCGAAG+AGG 0.668086 5_2:-1054511 None:intergenic
CTAACATATGGAACAATCGG+TGG 0.687645 5_2:+1053566 Msa0748050:CDS
AAAGGAAAATCCGTTTATCG+AGG 0.694930 5_2:+1053601 Msa0748050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTTTTTTTCC+TGG + chr5_2:1052452-1052471 Msa0748050:intron 10.0%
!!! TTTTTTAATTTTTTTTTCCT+GGG + chr5_2:1052453-1052472 Msa0748050:intron 10.0%
!!! TTTTTTTAATTTTTTTTTCC+TGG + chr5_2:1052452-1052471 Msa0748050:intron 10.0%
!!! TTTTTTAATTTTTTTTTCCT+GGG + chr5_2:1052453-1052472 Msa0748050:intron 10.0%
!!! TTTTTTTTTTTCCTATTTCT+TGG + chr5_2:1052314-1052333 Msa0748050:intron 15.0%
!!! TTTTTTTTTGTTTTGTTGTA+TGG + chr5_2:1052393-1052412 Msa0748050:intron 15.0%
!! ACAAAAAAAAACAACAAATT+TGG - chr5_2:1052504-1052523 None:intergenic 15.0%
!!! TTTGAATTCAATTTTTTTTC+TGG + chr5_2:1052536-1052555 Msa0748050:intron 15.0%
!!! TTGAATTCAATTTTTTTTCT+GGG + chr5_2:1052537-1052556 Msa0748050:intron 15.0%
!!! CTATTTTTGTTTTGAATTTA+TGG + chr5_2:1052613-1052632 Msa0748050:intron 15.0%
!! ATAAAATAAATGACAAAATG+TGG + chr5_2:1052884-1052903 Msa0748050:intron 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG + chr5_2:1054239-1054258 Msa0748050:three_prime_UTR 15.0%
!!! TTTTTTTTTTTCCTATTTCT+TGG + chr5_2:1052314-1052333 Msa0748050:intron 15.0%
!!! TTTTTTTTTGTTTTGTTGTA+TGG + chr5_2:1052393-1052412 Msa0748050:intron 15.0%
!! ACAAAAAAAAACAACAAATT+TGG - chr5_2:1052504-1052523 None:intergenic 15.0%
!!! TTTGAATTCAATTTTTTTTC+TGG + chr5_2:1052536-1052555 Msa0748050:intron 15.0%
!!! TTGAATTCAATTTTTTTTCT+GGG + chr5_2:1052537-1052556 Msa0748050:intron 15.0%
!!! CTATTTTTGTTTTGAATTTA+TGG + chr5_2:1052613-1052632 Msa0748050:intron 15.0%
!! ATAAAATAAATGACAAAATG+TGG + chr5_2:1052884-1052903 Msa0748050:intron 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG + chr5_2:1054239-1054258 Msa0748050:three_prime_UTR 15.0%
!! GAAAAAAAAAAAAAAGAACC+TGG - chr5_2:1052306-1052325 None:intergenic 20.0%
!! AAACTTGAAAAAAACCATAA+TGG - chr5_2:1052671-1052690 None:intergenic 20.0%
!!! TTCAAGTTTTTAAACCTATT+AGG + chr5_2:1052682-1052701 Msa0748050:intron 20.0%
!!! AATTGTGGTTTTTTTTTATG+TGG + chr5_2:1052709-1052728 Msa0748050:intron 20.0%
!!! TTTTATGTGGTATTAGAATT+AGG + chr5_2:1052722-1052741 Msa0748050:intron 20.0%
!! TTTATGTGGTATTAGAATTA+GGG + chr5_2:1052723-1052742 Msa0748050:intron 20.0%
!! CTACAAATGAAAATACAAAT+GGG - chr5_2:1052861-1052880 None:intergenic 20.0%
!! TCTACAAATGAAAATACAAA+TGG - chr5_2:1052862-1052881 None:intergenic 20.0%
!!! AGAAAATTTTGATGATTAAG+CGG + chr5_2:1053059-1053078 Msa0748050:intron 20.0%
!! TATACATTTAAGGAGATTAT+CGG + chr5_2:1054079-1054098 Msa0748050:CDS 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG + chr5_2:1054229-1054248 Msa0748050:three_prime_UTR 20.0%
!! TCAAATTTCAAAATCTTATC+AGG - chr5_2:1054322-1054341 None:intergenic 20.0%
!! GAAAAAAAAAAAAAAGAACC+TGG - chr5_2:1052306-1052325 None:intergenic 20.0%
!! AAACTTGAAAAAAACCATAA+TGG - chr5_2:1052671-1052690 None:intergenic 20.0%
!!! TTCAAGTTTTTAAACCTATT+AGG + chr5_2:1052682-1052701 Msa0748050:intron 20.0%
!!! AATTGTGGTTTTTTTTTATG+TGG + chr5_2:1052709-1052728 Msa0748050:intron 20.0%
!!! TTTTATGTGGTATTAGAATT+AGG + chr5_2:1052722-1052741 Msa0748050:intron 20.0%
!! TTTATGTGGTATTAGAATTA+GGG + chr5_2:1052723-1052742 Msa0748050:intron 20.0%
!! CTACAAATGAAAATACAAAT+GGG - chr5_2:1052861-1052880 None:intergenic 20.0%
!! TCTACAAATGAAAATACAAA+TGG - chr5_2:1052862-1052881 None:intergenic 20.0%
!!! AGAAAATTTTGATGATTAAG+CGG + chr5_2:1053059-1053078 Msa0748050:intron 20.0%
!! TATACATTTAAGGAGATTAT+CGG + chr5_2:1054079-1054098 Msa0748050:CDS 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG + chr5_2:1054229-1054248 Msa0748050:three_prime_UTR 20.0%
!! TCAAATTTCAAAATCTTATC+AGG - chr5_2:1054322-1054341 None:intergenic 20.0%
!!! ACACTTTTTTTTTTCTTCTG+TGG + chr5_2:1052202-1052221 Msa0748050:five_prime_UTR 25.0%
!!! CACTTTTTTTTTTCTTCTGT+GGG + chr5_2:1052203-1052222 Msa0748050:five_prime_UTR 25.0%
! ACAAAAAACAACCAAGAAAT+AGG - chr5_2:1052328-1052347 None:intergenic 25.0%
!!! TTCTTGGTTGTTTTTTGTTT+TGG + chr5_2:1052330-1052349 Msa0748050:intron 25.0%
!!! TTTTTGTTTTGTTGTATGGT+TGG + chr5_2:1052397-1052416 Msa0748050:intron 25.0%
!!! TTTTGTTTTGTTGTATGGTT+GGG + chr5_2:1052398-1052417 Msa0748050:intron 25.0%
! TTGAATTTATGGATGATTGA+TGG + chr5_2:1052624-1052643 Msa0748050:intron 25.0%
! TGAATTTATGGATGATTGAT+GGG + chr5_2:1052625-1052644 Msa0748050:intron 25.0%
!!! TTTTGATTTCTAAGCCATTA+TGG + chr5_2:1052654-1052673 Msa0748050:intron 25.0%
! AACATGTTACATAGACAAAA+GGG - chr5_2:1052784-1052803 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG - chr5_2:1052785-1052804 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG + chr5_2:1052891-1052910 Msa0748050:intron 25.0%
!!! TCATTTCATTGTTTGATTTG+AGG + chr5_2:1052937-1052956 Msa0748050:intron 25.0%
! ATACAAATTCACTGATATGA+CGG - chr5_2:1053940-1053959 None:intergenic 25.0%
! GCATTATTTAACAAAAATGC+AGG - chr5_2:1054148-1054167 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG + chr5_2:1054262-1054281 Msa0748050:three_prime_UTR 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG + chr5_2:1054413-1054432 Msa0748050:three_prime_UTR 25.0%
!! AGCTTTTGTACCTTATAATT+GGG + chr5_2:1054414-1054433 Msa0748050:three_prime_UTR 25.0%
!!! ACACTTTTTTTTTTCTTCTG+TGG + chr5_2:1052202-1052221 Msa0748050:five_prime_UTR 25.0%
!!! CACTTTTTTTTTTCTTCTGT+GGG + chr5_2:1052203-1052222 Msa0748050:five_prime_UTR 25.0%
! ACAAAAAACAACCAAGAAAT+AGG - chr5_2:1052328-1052347 None:intergenic 25.0%
!!! TTCTTGGTTGTTTTTTGTTT+TGG + chr5_2:1052330-1052349 Msa0748050:intron 25.0%
!!! TTTTTGTTTTGTTGTATGGT+TGG + chr5_2:1052397-1052416 Msa0748050:intron 25.0%
!!! TTTTGTTTTGTTGTATGGTT+GGG + chr5_2:1052398-1052417 Msa0748050:intron 25.0%
! TTGAATTTATGGATGATTGA+TGG + chr5_2:1052624-1052643 Msa0748050:intron 25.0%
! TGAATTTATGGATGATTGAT+GGG + chr5_2:1052625-1052644 Msa0748050:intron 25.0%
!!! TTTTGATTTCTAAGCCATTA+TGG + chr5_2:1052654-1052673 Msa0748050:intron 25.0%
! AACATGTTACATAGACAAAA+GGG - chr5_2:1052784-1052803 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG - chr5_2:1052785-1052804 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG + chr5_2:1052891-1052910 Msa0748050:intron 25.0%
!!! TCATTTCATTGTTTGATTTG+AGG + chr5_2:1052937-1052956 Msa0748050:intron 25.0%
! ATACAAATTCACTGATATGA+CGG - chr5_2:1053940-1053959 None:intergenic 25.0%
! GCATTATTTAACAAAAATGC+AGG - chr5_2:1054148-1054167 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG + chr5_2:1054262-1054281 Msa0748050:three_prime_UTR 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG + chr5_2:1054413-1054432 Msa0748050:three_prime_UTR 25.0%
!! AGCTTTTGTACCTTATAATT+GGG + chr5_2:1054414-1054433 Msa0748050:three_prime_UTR 25.0%
! ATTAAACTTTTCACAAACCC+AGG - chr5_2:1052473-1052492 None:intergenic 30.0%
CATCAATACAGAGAGATAAA+GGG - chr5_2:1052579-1052598 None:intergenic 30.0%
ACATCAATACAGAGAGATAA+AGG - chr5_2:1052580-1052599 None:intergenic 30.0%
! TATCTCTCTGTATTGATGTT+TGG + chr5_2:1052581-1052600 Msa0748050:intron 30.0%
AACCTATTAGGATTGAATTG+TGG + chr5_2:1052694-1052713 Msa0748050:intron 30.0%
AACCACAATTCAATCCTAAT+AGG - chr5_2:1052699-1052718 None:intergenic 30.0%
CATAGACAAAAGGGTTTAAA+AGG - chr5_2:1052775-1052794 None:intergenic 30.0%
!! TTCATTGTTTGATTTGAGGT+TGG + chr5_2:1052941-1052960 Msa0748050:intron 30.0%
! GTCTTATTCATCTATTTGCA+CGG + chr5_2:1053221-1053240 Msa0748050:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG + chr5_2:1053222-1053241 Msa0748050:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG + chr5_2:1053400-1053419 Msa0748050:CDS 30.0%
GAATCAAACTCAACATTTAC+AGG + chr5_2:1053482-1053501 Msa0748050:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG + chr5_2:1053685-1053704 Msa0748050:CDS 30.0%
! TCCTGAAGAGTATACATTTA+AGG + chr5_2:1054069-1054088 Msa0748050:CDS 30.0%
TCCTTAAATGTATACTCTTC+AGG - chr5_2:1054073-1054092 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG - chr5_2:1054170-1054189 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG + chr5_2:1054261-1054280 Msa0748050:three_prime_UTR 30.0%
TTCGAAAATTGGATAAACAG+AGG - chr5_2:1054351-1054370 None:intergenic 30.0%
TTCATGCAAACCCAATTATA+AGG - chr5_2:1054427-1054446 None:intergenic 30.0%
! ATTAAACTTTTCACAAACCC+AGG - chr5_2:1052473-1052492 None:intergenic 30.0%
CATCAATACAGAGAGATAAA+GGG - chr5_2:1052579-1052598 None:intergenic 30.0%
ACATCAATACAGAGAGATAA+AGG - chr5_2:1052580-1052599 None:intergenic 30.0%
! TATCTCTCTGTATTGATGTT+TGG + chr5_2:1052581-1052600 Msa0748050:intron 30.0%
AACCTATTAGGATTGAATTG+TGG + chr5_2:1052694-1052713 Msa0748050:intron 30.0%
AACCACAATTCAATCCTAAT+AGG - chr5_2:1052699-1052718 None:intergenic 30.0%
CATAGACAAAAGGGTTTAAA+AGG - chr5_2:1052775-1052794 None:intergenic 30.0%
!! TTCATTGTTTGATTTGAGGT+TGG + chr5_2:1052941-1052960 Msa0748050:intron 30.0%
! GTCTTATTCATCTATTTGCA+CGG + chr5_2:1053221-1053240 Msa0748050:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG + chr5_2:1053222-1053241 Msa0748050:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG + chr5_2:1053400-1053419 Msa0748050:CDS 30.0%
GAATCAAACTCAACATTTAC+AGG + chr5_2:1053482-1053501 Msa0748050:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG + chr5_2:1053685-1053704 Msa0748050:CDS 30.0%
! TCCTGAAGAGTATACATTTA+AGG + chr5_2:1054069-1054088 Msa0748050:CDS 30.0%
TCCTTAAATGTATACTCTTC+AGG - chr5_2:1054073-1054092 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG - chr5_2:1054170-1054189 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG + chr5_2:1054261-1054280 Msa0748050:three_prime_UTR 30.0%
TTCGAAAATTGGATAAACAG+AGG - chr5_2:1054351-1054370 None:intergenic 30.0%
TTCATGCAAACCCAATTATA+AGG - chr5_2:1054427-1054446 None:intergenic 30.0%
ATTATAGTACTCCTCAGACA+TGG - chr5_2:1052245-1052264 None:intergenic 35.0%
TTATGTTGCCAATGCAAAAC+TGG + chr5_2:1052421-1052440 Msa0748050:intron 35.0%
GAAATCACATGAACAGAAAC+TGG - chr5_2:1052919-1052938 None:intergenic 35.0%
TGATATCATGCAGATGAAGT+TGG + chr5_2:1052979-1052998 Msa0748050:intron 35.0%
TGCGAAATTAAGCATGTAGT+AGG + chr5_2:1053033-1053052 Msa0748050:intron 35.0%
ACCAAAAACCTCTTAAGACA+CGG - chr5_2:1053088-1053107 None:intergenic 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG + chr5_2:1053100-1053119 Msa0748050:intron 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG + chr5_2:1053101-1053120 Msa0748050:intron 35.0%
ATGTTTGTGATCATCCCAAT+AGG + chr5_2:1053197-1053216 Msa0748050:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG - chr5_2:1053214-1053233 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG - chr5_2:1053215-1053234 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG - chr5_2:1053296-1053315 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG + chr5_2:1053339-1053358 Msa0748050:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG + chr5_2:1053420-1053439 Msa0748050:CDS 35.0%
AGGATGTACTGTGAAACATA+AGG - chr5_2:1053458-1053477 None:intergenic 35.0%
ATGTTGAGTTTGATTCCAGA+AGG - chr5_2:1053478-1053497 None:intergenic 35.0%
CTATTGCTTGCGAAAATCAA+CGG - chr5_2:1053518-1053537 None:intergenic 35.0%
!! GTTGATTTTCGCAAGCAATA+GGG + chr5_2:1053517-1053536 Msa0748050:CDS 35.0%
ATTGTTCCATATGTTAGTCG+CGG - chr5_2:1053563-1053582 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG + chr5_2:1053563-1053582 Msa0748050:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG + chr5_2:1053601-1053620 Msa0748050:CDS 35.0%
CTCAGTTGTAGATGAAGAAT+CGG - chr5_2:1053767-1053786 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG + chr5_2:1053810-1053829 Msa0748050:CDS 35.0%
ATTCAGAACGTGATATGCAA+AGG + chr5_2:1054025-1054044 Msa0748050:CDS 35.0%
AAGGAGATTATCGGAAAACT+AGG + chr5_2:1054088-1054107 Msa0748050:CDS 35.0%
GCTGAATAAGAATGAGGAAT+CGG - chr5_2:1054115-1054134 None:intergenic 35.0%
! TCCAATTTTCGAAACCCTAT+TGG + chr5_2:1054358-1054377 Msa0748050:three_prime_UTR 35.0%
TCCAATAGGGTTTCGAAAAT+TGG - chr5_2:1054362-1054381 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG + chr5_2:1054361-1054380 Msa0748050:three_prime_UTR 35.0%
! ATTTTCGAAACCCTATTGGA+GGG + chr5_2:1054362-1054381 Msa0748050:three_prime_UTR 35.0%
!!! AGTGGTTTTTTCATGCCTTT+TGG + chr5_2:1054388-1054407 Msa0748050:three_prime_UTR 35.0%
!!! GTGGTTTTTTCATGCCTTTT+GGG + chr5_2:1054389-1054408 Msa0748050:three_prime_UTR 35.0%
CCAAATTCCATGCAACTATT+AGG - chr5_2:1054461-1054480 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG + chr5_2:1054458-1054477 Msa0748050:three_prime_UTR 35.0%
GCATGGAATTTGGATTTCAT+TGG + chr5_2:1054468-1054487 Msa0748050:three_prime_UTR 35.0%
TATACACATTCCAACCTCTT+CGG + chr5_2:1054497-1054516 Msa0748050:three_prime_UTR 35.0%
ATTATAGTACTCCTCAGACA+TGG - chr5_2:1052245-1052264 None:intergenic 35.0%
TTATGTTGCCAATGCAAAAC+TGG + chr5_2:1052421-1052440 Msa0748050:intron 35.0%
GAAATCACATGAACAGAAAC+TGG - chr5_2:1052919-1052938 None:intergenic 35.0%
TGATATCATGCAGATGAAGT+TGG + chr5_2:1052979-1052998 Msa0748050:intron 35.0%
TGCGAAATTAAGCATGTAGT+AGG + chr5_2:1053033-1053052 Msa0748050:intron 35.0%
ACCAAAAACCTCTTAAGACA+CGG - chr5_2:1053088-1053107 None:intergenic 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG + chr5_2:1053100-1053119 Msa0748050:intron 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG + chr5_2:1053101-1053120 Msa0748050:intron 35.0%
ATGTTTGTGATCATCCCAAT+AGG + chr5_2:1053197-1053216 Msa0748050:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG - chr5_2:1053214-1053233 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG - chr5_2:1053215-1053234 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG - chr5_2:1053296-1053315 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG + chr5_2:1053339-1053358 Msa0748050:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG + chr5_2:1053420-1053439 Msa0748050:CDS 35.0%
AGGATGTACTGTGAAACATA+AGG - chr5_2:1053458-1053477 None:intergenic 35.0%
ATGTTGAGTTTGATTCCAGA+AGG - chr5_2:1053478-1053497 None:intergenic 35.0%
CTATTGCTTGCGAAAATCAA+CGG - chr5_2:1053518-1053537 None:intergenic 35.0%
!! GTTGATTTTCGCAAGCAATA+GGG + chr5_2:1053517-1053536 Msa0748050:CDS 35.0%
ATTGTTCCATATGTTAGTCG+CGG - chr5_2:1053563-1053582 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG + chr5_2:1053563-1053582 Msa0748050:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG + chr5_2:1053601-1053620 Msa0748050:CDS 35.0%
CTCAGTTGTAGATGAAGAAT+CGG - chr5_2:1053767-1053786 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG + chr5_2:1053810-1053829 Msa0748050:CDS 35.0%
ATTCAGAACGTGATATGCAA+AGG + chr5_2:1054025-1054044 Msa0748050:CDS 35.0%
AAGGAGATTATCGGAAAACT+AGG + chr5_2:1054088-1054107 Msa0748050:CDS 35.0%
GCTGAATAAGAATGAGGAAT+CGG - chr5_2:1054115-1054134 None:intergenic 35.0%
! TCCAATTTTCGAAACCCTAT+TGG + chr5_2:1054358-1054377 Msa0748050:three_prime_UTR 35.0%
TCCAATAGGGTTTCGAAAAT+TGG - chr5_2:1054362-1054381 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG + chr5_2:1054361-1054380 Msa0748050:three_prime_UTR 35.0%
! ATTTTCGAAACCCTATTGGA+GGG + chr5_2:1054362-1054381 Msa0748050:three_prime_UTR 35.0%
!!! AGTGGTTTTTTCATGCCTTT+TGG + chr5_2:1054388-1054407 Msa0748050:three_prime_UTR 35.0%
!!! GTGGTTTTTTCATGCCTTTT+GGG + chr5_2:1054389-1054408 Msa0748050:three_prime_UTR 35.0%
CCAAATTCCATGCAACTATT+AGG - chr5_2:1054461-1054480 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG + chr5_2:1054458-1054477 Msa0748050:three_prime_UTR 35.0%
GCATGGAATTTGGATTTCAT+TGG + chr5_2:1054468-1054487 Msa0748050:three_prime_UTR 35.0%
TATACACATTCCAACCTCTT+CGG + chr5_2:1054497-1054516 Msa0748050:three_prime_UTR 35.0%
GATATCTGCGATGATGTTTG+TGG + chr5_2:1052280-1052299 Msa0748050:CDS 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG - chr5_2:1052432-1052451 None:intergenic 40.0%
! ACCGTGTCTTAAGAGGTTTT+TGG + chr5_2:1053084-1053103 Msa0748050:intron 40.0%
!! ATACTTTCTGAGACCGTTGT+GGG + chr5_2:1053256-1053275 Msa0748050:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG - chr5_2:1053310-1053329 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG - chr5_2:1053311-1053330 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG + chr5_2:1053338-1053357 Msa0748050:CDS 40.0%
TGTTTCACAGTACATCCTTC+TGG + chr5_2:1053460-1053479 Msa0748050:CDS 40.0%
!!! CGTTGATTTTCGCAAGCAAT+AGG + chr5_2:1053516-1053535 Msa0748050:CDS 40.0%
CTAACATATGGAACAATCGG+TGG + chr5_2:1053566-1053585 Msa0748050:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG - chr5_2:1053719-1053738 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG + chr5_2:1053723-1053742 Msa0748050:CDS 40.0%
ACACAATCAATCTCTTGAGG+TGG + chr5_2:1053726-1053745 Msa0748050:CDS 40.0%
GTTGTAGATGAAGAATCGGA+GGG - chr5_2:1053763-1053782 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG - chr5_2:1053764-1053783 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG + chr5_2:1053765-1053784 Msa0748050:CDS 40.0%
TTGACAACAAAAGCTGGAGA+GGG + chr5_2:1053816-1053835 Msa0748050:CDS 40.0%
GGTCAGGGTTTAAGTAATGA+GGG - chr5_2:1054003-1054022 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG + chr5_2:1054002-1054021 Msa0748050:CDS 40.0%
! TGCATATCACGTTCTGAATC+CGG - chr5_2:1054024-1054043 None:intergenic 40.0%
TGCACTGCTGAATAAGAATG+AGG - chr5_2:1054121-1054140 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG + chr5_2:1054172-1054191 Msa0748050:CDS 40.0%
! ATAGGGTCACTCTTTAGAGA+GGG + chr5_2:1054279-1054298 Msa0748050:three_prime_UTR 40.0%
!! AACCACTTTTCCCTCCAATA+GGG - chr5_2:1054375-1054394 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG - chr5_2:1054376-1054395 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG - chr5_2:1054450-1054469 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG - chr5_2:1054451-1054470 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG + chr5_2:1054451-1054470 Msa0748050:three_prime_UTR 40.0%
AAATCAGTAAGCAACCGAAG+AGG - chr5_2:1054514-1054533 None:intergenic 40.0%
GATATCTGCGATGATGTTTG+TGG + chr5_2:1052280-1052299 Msa0748050:CDS 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG - chr5_2:1052432-1052451 None:intergenic 40.0%
! ACCGTGTCTTAAGAGGTTTT+TGG + chr5_2:1053084-1053103 Msa0748050:intron 40.0%
!! ATACTTTCTGAGACCGTTGT+GGG + chr5_2:1053256-1053275 Msa0748050:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG - chr5_2:1053310-1053329 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG - chr5_2:1053311-1053330 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG + chr5_2:1053338-1053357 Msa0748050:CDS 40.0%
TGTTTCACAGTACATCCTTC+TGG + chr5_2:1053460-1053479 Msa0748050:CDS 40.0%
!!! CGTTGATTTTCGCAAGCAAT+AGG + chr5_2:1053516-1053535 Msa0748050:CDS 40.0%
CTAACATATGGAACAATCGG+TGG + chr5_2:1053566-1053585 Msa0748050:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG - chr5_2:1053719-1053738 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG + chr5_2:1053723-1053742 Msa0748050:CDS 40.0%
ACACAATCAATCTCTTGAGG+TGG + chr5_2:1053726-1053745 Msa0748050:CDS 40.0%
GTTGTAGATGAAGAATCGGA+GGG - chr5_2:1053763-1053782 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG - chr5_2:1053764-1053783 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG + chr5_2:1053765-1053784 Msa0748050:CDS 40.0%
TTGACAACAAAAGCTGGAGA+GGG + chr5_2:1053816-1053835 Msa0748050:CDS 40.0%
GGTCAGGGTTTAAGTAATGA+GGG - chr5_2:1054003-1054022 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG + chr5_2:1054002-1054021 Msa0748050:CDS 40.0%
! TGCATATCACGTTCTGAATC+CGG - chr5_2:1054024-1054043 None:intergenic 40.0%
TGCACTGCTGAATAAGAATG+AGG - chr5_2:1054121-1054140 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG + chr5_2:1054172-1054191 Msa0748050:CDS 40.0%
! ATAGGGTCACTCTTTAGAGA+GGG + chr5_2:1054279-1054298 Msa0748050:three_prime_UTR 40.0%
!! AACCACTTTTCCCTCCAATA+GGG - chr5_2:1054375-1054394 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG - chr5_2:1054376-1054395 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG - chr5_2:1054450-1054469 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG - chr5_2:1054451-1054470 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG + chr5_2:1054451-1054470 Msa0748050:three_prime_UTR 40.0%
AAATCAGTAAGCAACCGAAG+AGG - chr5_2:1054514-1054533 None:intergenic 40.0%
CTTCTTCTTCACCATGTCTG+AGG + chr5_2:1052231-1052250 Msa0748050:exon 45.0%
! CAGGTGTATTTTGCGAGGAT+TGG + chr5_2:1053154-1053173 Msa0748050:CDS 45.0%
!! CATACTTTCTGAGACCGTTG+TGG + chr5_2:1053255-1053274 Msa0748050:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG - chr5_2:1053287-1053306 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG - chr5_2:1053290-1053309 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG + chr5_2:1053316-1053335 Msa0748050:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG + chr5_2:1053343-1053362 Msa0748050:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG - chr5_2:1053383-1053402 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG + chr5_2:1053576-1053595 Msa0748050:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG + chr5_2:1053604-1053623 Msa0748050:CDS 45.0%
TTGTGTTGGATCAGCTTCTG+AGG + chr5_2:1053639-1053658 Msa0748050:CDS 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG + chr5_2:1053648-1053667 Msa0748050:CDS 45.0%
GAGATTGATTGTGTGTGCAC+TGG - chr5_2:1053720-1053739 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG - chr5_2:1053817-1053836 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG + chr5_2:1053815-1053834 Msa0748050:CDS 45.0%
TCTTGTCGGTCTGGTATCTA+TGG - chr5_2:1053847-1053866 None:intergenic 45.0%
GTGTGCATACCTTGTCTTGT+CGG - chr5_2:1053861-1053880 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG + chr5_2:1053886-1053905 Msa0748050:CDS 45.0%
CGGTCAGGGTTTAAGTAATG+AGG - chr5_2:1054004-1054023 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG - chr5_2:1054193-1054212 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG + chr5_2:1054193-1054212 Msa0748050:CDS 45.0%
! AAGTGGCTGACTCTGAATGT+AGG + chr5_2:1054210-1054229 Msa0748050:exon 45.0%
! CATAGGGTCACTCTTTAGAG+AGG + chr5_2:1054278-1054297 Msa0748050:three_prime_UTR 45.0%
AACCCTATTGGAGGGAAAAG+TGG + chr5_2:1054370-1054389 Msa0748050:three_prime_UTR 45.0%
GGTACAAAAGCTTGCCCAAA+AGG - chr5_2:1054406-1054425 None:intergenic 45.0%
CTTCTTCTTCACCATGTCTG+AGG + chr5_2:1052231-1052250 Msa0748050:exon 45.0%
! CAGGTGTATTTTGCGAGGAT+TGG + chr5_2:1053154-1053173 Msa0748050:CDS 45.0%
!! CATACTTTCTGAGACCGTTG+TGG + chr5_2:1053255-1053274 Msa0748050:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG - chr5_2:1053287-1053306 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG - chr5_2:1053290-1053309 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG + chr5_2:1053316-1053335 Msa0748050:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG + chr5_2:1053343-1053362 Msa0748050:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG - chr5_2:1053383-1053402 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG + chr5_2:1053576-1053595 Msa0748050:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG + chr5_2:1053604-1053623 Msa0748050:CDS 45.0%
TTGTGTTGGATCAGCTTCTG+AGG + chr5_2:1053639-1053658 Msa0748050:CDS 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG + chr5_2:1053648-1053667 Msa0748050:CDS 45.0%
GAGATTGATTGTGTGTGCAC+TGG - chr5_2:1053720-1053739 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG - chr5_2:1053817-1053836 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG + chr5_2:1053815-1053834 Msa0748050:CDS 45.0%
TCTTGTCGGTCTGGTATCTA+TGG - chr5_2:1053847-1053866 None:intergenic 45.0%
GTGTGCATACCTTGTCTTGT+CGG - chr5_2:1053861-1053880 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG + chr5_2:1053886-1053905 Msa0748050:CDS 45.0%
CGGTCAGGGTTTAAGTAATG+AGG - chr5_2:1054004-1054023 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG - chr5_2:1054193-1054212 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG + chr5_2:1054193-1054212 Msa0748050:CDS 45.0%
! AAGTGGCTGACTCTGAATGT+AGG + chr5_2:1054210-1054229 Msa0748050:exon 45.0%
! CATAGGGTCACTCTTTAGAG+AGG + chr5_2:1054278-1054297 Msa0748050:three_prime_UTR 45.0%
AACCCTATTGGAGGGAAAAG+TGG + chr5_2:1054370-1054389 Msa0748050:three_prime_UTR 45.0%
GGTACAAAAGCTTGCCCAAA+AGG - chr5_2:1054406-1054425 None:intergenic 45.0%
!!! TTTTTTGTGTGCGCGCGTGT+GGG - chr5_2:1052176-1052195 None:intergenic 50.0%
!!! TTTTTTTGTGTGCGCGCGTG+TGG - chr5_2:1052177-1052196 None:intergenic 50.0%
! CGACTCAGGTGTATTTTGCG+AGG + chr5_2:1053149-1053168 Msa0748050:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG + chr5_2:1053342-1053361 Msa0748050:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG + chr5_2:1053344-1053363 Msa0748050:CDS 50.0%
TGTGCAAACTTCATGGGTGG+GGG + chr5_2:1053345-1053364 Msa0748050:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG + chr5_2:1053583-1053602 Msa0748050:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG - chr5_2:1053614-1053633 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG + chr5_2:1053625-1053644 Msa0748050:CDS 50.0%
! GATCAGCTTCTGAGGATAGC+AGG + chr5_2:1053647-1053666 Msa0748050:CDS 50.0%
GATACCAGACCGACAAGACA+AGG + chr5_2:1053849-1053868 Msa0748050:CDS 50.0%
CATACCTTGTCTTGTCGGTC+TGG - chr5_2:1053856-1053875 None:intergenic 50.0%
GGAATCGCACTCGATCATAG+TGG - chr5_2:1053982-1054001 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG - chr5_2:1054018-1054037 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG - chr5_2:1054019-1054038 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG - chr5_2:1054510-1054529 None:intergenic 50.0%
!!! TTTTTTGTGTGCGCGCGTGT+GGG - chr5_2:1052176-1052195 None:intergenic 50.0%
!!! TTTTTTTGTGTGCGCGCGTG+TGG - chr5_2:1052177-1052196 None:intergenic 50.0%
! CGACTCAGGTGTATTTTGCG+AGG + chr5_2:1053149-1053168 Msa0748050:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG + chr5_2:1053342-1053361 Msa0748050:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG + chr5_2:1053344-1053363 Msa0748050:CDS 50.0%
TGTGCAAACTTCATGGGTGG+GGG + chr5_2:1053345-1053364 Msa0748050:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG + chr5_2:1053583-1053602 Msa0748050:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG - chr5_2:1053614-1053633 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG + chr5_2:1053625-1053644 Msa0748050:CDS 50.0%
! GATCAGCTTCTGAGGATAGC+AGG + chr5_2:1053647-1053666 Msa0748050:CDS 50.0%
GATACCAGACCGACAAGACA+AGG + chr5_2:1053849-1053868 Msa0748050:CDS 50.0%
CATACCTTGTCTTGTCGGTC+TGG - chr5_2:1053856-1053875 None:intergenic 50.0%
GGAATCGCACTCGATCATAG+TGG - chr5_2:1053982-1054001 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG - chr5_2:1054018-1054037 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG - chr5_2:1054019-1054038 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG - chr5_2:1054510-1054529 None:intergenic 50.0%
CTGCGATGATGTTTGTGGCC+AGG + chr5_2:1052285-1052304 Msa0748050:CDS 55.0%
AGCGGTGACCGTGTCTTAAG+AGG + chr5_2:1053077-1053096 Msa0748050:intron 55.0%
GTCGAGCCGCGACTAACATA+TGG + chr5_2:1053554-1053573 Msa0748050:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG + chr5_2:1053893-1053912 Msa0748050:CDS 55.0%
CTGCGATGATGTTTGTGGCC+AGG + chr5_2:1052285-1052304 Msa0748050:CDS 55.0%
AGCGGTGACCGTGTCTTAAG+AGG + chr5_2:1053077-1053096 Msa0748050:intron 55.0%
GTCGAGCCGCGACTAACATA+TGG + chr5_2:1053554-1053573 Msa0748050:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG + chr5_2:1053893-1053912 Msa0748050:CDS 55.0%
CGCTGAGCATGTCACGACTC+AGG + chr5_2:1053135-1053154 Msa0748050:CDS 60.0%
TTCGGCGGAGACTCCCACAA+CGG - chr5_2:1053272-1053291 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG + chr5_2:1053897-1053916 Msa0748050:CDS 60.0%
CGCTGAGCATGTCACGACTC+AGG + chr5_2:1053135-1053154 Msa0748050:CDS 60.0%
TTCGGCGGAGACTCCCACAA+CGG - chr5_2:1053272-1053291 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG + chr5_2:1053897-1053916 Msa0748050:CDS 60.0%
CGTGACATGCTCAGCGCTGC+AGG - chr5_2:1053131-1053150 None:intergenic 65.0%
CGTGACATGCTCAGCGCTGC+AGG - chr5_2:1053131-1053150 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1052158 1054579 1052158 ID=Msa0748050;Name=Msa0748050
chr5_2 mRNA 1052158 1054579 1052158 ID=Msa0748050-mRNA-1;Parent=Msa0748050;Name=Msa0748050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86|0|0.5|1|1|1|2|360|387
chr5_2 exon 1052158 1052306 1052158 ID=Msa0748050-mRNA-1:exon:249;Parent=Msa0748050-mRNA-1
chr5_2 exon 1053119 1054579 1053119 ID=Msa0748050-mRNA-1:exon:250;Parent=Msa0748050-mRNA-1
chr5_2 five_prime_UTR 1052158 1052243 1052158 ID=Msa0748050-mRNA-1:five_prime_utr;Parent=Msa0748050-mRNA-1
chr5_2 CDS 1052244 1052306 1052244 ID=Msa0748050-mRNA-1:cds;Parent=Msa0748050-mRNA-1
chr5_2 CDS 1053119 1054219 1053119 ID=Msa0748050-mRNA-1:cds;Parent=Msa0748050-mRNA-1
chr5_2 three_prime_UTR 1054220 1054579 1054220 ID=Msa0748050-mRNA-1:three_prime_utr;Parent=Msa0748050-mRNA-1
Gene Sequence

>Msa0748050

ATGTCTGAGGAGTACTATAATTCGAAAAAAACTGATGATATCTGCGATGATGTTTGTGGCCAGCAGGGAACACCTGCAGCGCTGAGCATGTCACGACTCAGGTGTATTTTGCGAGGATTGGACTTCAAGACTTACATATTTATGTTTGTGATCATCCCAATAGGCGTCTTATTCATCTATTTGCACGGGCAGAAAATCTCATACTTTCTGAGACCGTTGTGGGAGTCTCCGCCGAAGCCGTTTCATGAAATCCCTCACTATTATCACGAGAACGTGTCGATGGAATCTCTGTGCAAACTTCATGGGTGGGGGATTCGCGAATCGCCGAGACGAGTCTTTGATGCTGTTTTGTTTAGCAATGAAGTGGATATGCTTACTATTCGATGGAAAGAAATGTATCCTTATGTTTCACAGTACATCCTTCTGGAATCAAACTCAACATTTACAGGATTCGTCAAACCGTTGATTTTCGCAAGCAATAGGGACAAGTTCAAGTTTGTCGAGCCGCGACTAACATATGGAACAATCGGTGGAAGATTCAGGAGAAAGGAAAATCCGTTTATCGAGGAGGCACGTCAAAGAGTTGTGTTGGATCAGCTTCTGAGGATAGCAGGGATTGAAGATGACGATCTTTTGATAATGTCTGATGTGGATGAGATTCCCAGTGCACACACAATCAATCTCTTGAGGTGGTGTGATGATATCCCTCCGATTCTTCATCTACAACTGAGGAATTACTTGTACTCTTTCGAGTTTTTCCTTGACAACAAAAGCTGGAGAGGGTCAATCCATAGATACCAGACCGACAAGACAAGGTATGCACACTATAGACAGTCTGATCTACTGCTGTCGGATGCTGGCTGGCACTGCAGTTTCTGTTTCCGTCATATCAGTGAATTTGTATTTAAGATGAAAGCGTACAGCCACTATGATCGAGTGCGATTCCCTCATTACTTAAACCCTGACCGGATTCAGAACGTGATATGCAAAGGTGCTGACTTATTCGACATGCTTCCTGAAGAGTATACATTTAAGGAGATTATCGGAAAACTAGGACCGATTCCTCATTCTTATTCAGCAGTGCATCTTCCTGCATTTTTGTTAAATAATGCCGATAGATACAAGTACTTGTTGCCTGGTAACTGCAGAAGAGAAAGTGGCTGA

Protein sequence

>Msa0748050

MSEEYYNSKKTDDICDDVCGQQGTPAALSMSRLRCILRGLDFKTYIFMFVIIPIGVLFIYLHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMESLCKLHGWGIRESPRRVFDAVLFSNEVDMLTIRWKEMYPYVSQYILLESNSTFTGFVKPLIFASNRDKFKFVEPRLTYGTIGGRFRRKENPFIEEARQRVVLDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPPILHLQLRNYLYSFEFFLDNKSWRGSIHRYQTDKTRYAHYRQSDLLLSDAGWHCSFCFRHISEFVFKMKAYSHYDRVRFPHYLNPDRIQNVICKGADLFDMLPEEYTFKEIIGKLGPIPHSYSAVHLPAFLLNNADRYKYLLPGNCRRESG*