AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0822370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822370 MtrunA17_Chr5g0442741 92.093 215 17 0 1 215 1 215 1.09e-148 412
Msa0822370 MtrunA17_Chr5g0442751 89.352 216 23 0 1 216 1 216 1.27e-144 402
Msa0822370 MtrunA17_Chr3g0095781 69.585 217 63 2 1 216 1 215 8.05e-110 313
Msa0822370 MtrunA17_Chr3g0095821 71.176 170 46 2 47 215 1 168 8.98e-87 253
Msa0822370 MtrunA17_Chr3g0109891 53.241 216 95 4 1 213 1 213 2.19e-76 229
Msa0822370 MtrunA17_Chr1g0157211 42.922 219 118 4 3 215 5 222 1.09e-56 179
Msa0822370 MtrunA17_Chr1g0195811 42.925 212 116 4 2 211 3 211 2.25e-56 178
Msa0822370 MtrunA17_Chr1g0195831 43.128 211 116 4 1 209 1 209 5.31e-55 174
Msa0822370 MtrunA17_Chr1g0195821 43.396 212 115 4 2 211 3 211 9.09e-54 171
Msa0822370 MtrunA17_Chr1g0189001 80.000 40 8 0 167 206 1 40 1.69e-17 73.2
Msa0822370 MtrunA17_Chr1g0198101 48.485 66 33 1 146 211 1 65 9.25e-16 69.3
Msa0822370 MtrunA17_Chr3g0095811 66.667 48 16 0 1 48 1 48 3.55e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822370 AT2G30860.1 62.212 217 79 2 1 216 1 215 1.21e-100 291
Msa0822370 AT2G30870.1 58.525 217 87 2 1 216 1 215 3.57e-90 264
Msa0822370 AT3G03190.1 48.826 213 105 3 1 211 1 211 1.95e-68 209
Msa0822370 AT2G30860.2 61.290 155 57 2 1 154 1 153 1.16e-65 200
Msa0822370 AT5G17220.1 45.283 212 114 2 1 211 1 211 2.15e-63 196
Msa0822370 AT3G62760.1 45.714 210 110 4 1 208 1 208 2.68e-59 186
Msa0822370 AT2G47730.2 41.706 211 119 4 5 213 54 262 3.50e-55 177
Msa0822370 AT2G47730.1 41.706 211 119 4 5 213 54 262 3.50e-55 177
Msa0822370 AT1G02930.2 41.827 208 117 4 3 209 4 208 3.81e-51 165
Msa0822370 AT1G02930.1 41.827 208 117 4 3 209 4 208 3.81e-51 165
Msa0822370 AT2G02930.1 42.180 211 116 4 3 209 4 212 2.03e-50 163
Msa0822370 AT1G02920.1 42.308 208 117 3 3 209 4 209 2.65e-50 162
Msa0822370 AT4G02520.1 40.952 210 118 4 3 208 4 211 6.26e-50 162
Msa0822370 AT1G02950.3 40.686 204 117 4 4 205 26 227 8.79e-46 152
Msa0822370 AT1G02950.1 40.686 204 117 4 4 205 26 227 8.79e-46 152
Msa0822370 AT1G02950.2 40.686 204 117 4 4 205 28 229 9.59e-46 152
Msa0822370 AT1G02950.5 40.686 204 117 4 4 205 38 239 1.22e-45 152
Msa0822370 AT1G02940.4 38.095 210 126 4 4 211 40 247 4.83e-45 150
Msa0822370 AT1G02940.1 38.095 210 126 4 4 211 40 247 4.83e-45 150
Msa0822370 AT1G02940.2 38.095 210 126 4 4 211 65 272 6.83e-45 151
Msa0822370 AT1G02940.3 38.095 210 126 4 4 211 53 260 7.28e-45 150
Msa0822370 AT1G49860.1 40.097 207 117 4 9 209 9 214 4.18e-43 145
Msa0822370 AT1G02950.4 38.194 144 86 3 63 205 60 201 2.11e-25 99.0
Msa0822370 AT2G02390.2 31.633 98 65 1 11 108 18 113 2.38e-11 60.8
Msa0822370 AT2G02390.1 31.633 98 65 1 11 108 18 113 3.01e-11 61.2
Msa0822370 AT2G02380.1 36.765 68 43 0 10 77 20 87 9.96e-11 59.7

Find 83 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAGTCACCTTCCATTTA+TGG 0.066681 5_3:+60723338 Msa0822370:CDS
GATGGAGACTATACCCTTTA+TGG 0.175031 5_3:+60722630 Msa0822370:CDS
GGATTACGTTGTTAACAATA+TGG 0.214666 5_3:+60723359 Msa0822370:CDS
TCACCCTCCAAGACATTAAT+AGG 0.249295 5_3:-60722430 None:intergenic
GTTCACAATCTGCAGCCTTT+TGG 0.299664 5_3:+60722588 Msa0822370:intron
TCACTCTCTTCAATCACCTT+TGG 0.309741 5_3:-60723228 None:intergenic
TTAACAACGTAATCCATAAA+TGG 0.311970 5_3:-60723351 None:intergenic
GCTATCAAAGAGCAAGTATT+TGG 0.324415 5_3:+60723290 Msa0822370:CDS
GGGGAAGGATTATTTGATAA+AGG 0.330935 5_3:+60723380 Msa0822370:CDS
TGGTAAATGTTACACTTTAG+AGG 0.340766 5_3:+60723553 Msa0822370:three_prime_UTR
TCTTCAATCACCTTTGGATC+TGG 0.357222 5_3:-60723222 None:intergenic
AAGATACACTTCACTTAAGT+TGG 0.360751 5_3:-60723483 None:intergenic
TGAGAAGAAAATCGAATTTG+AGG 0.392525 5_3:+60722402 Msa0822370:CDS
GGTTGTCCCTATTAATGTCT+TGG 0.396323 5_3:+60722423 Msa0822370:CDS
ACCTGAGTACCTCAAATTAC+AGG 0.397815 5_3:+60722462 Msa0822370:CDS
AATGCTTAAACAAGAGATAA+GGG 0.400123 5_3:-60722300 None:intergenic
ACTGTTCCTGTTATTAAAGA+TGG 0.400215 5_3:+60722612 Msa0822370:CDS
TTGATCGGTGGGAATCTTGC+TGG 0.401278 5_3:-60722224 None:intergenic
CATCTATTTGTGCAGAGTCT+CGG 0.401539 5_3:+60723019 Msa0822370:intron
ATCTATTTGTGCAGAGTCTC+GGG 0.405511 5_3:+60723020 Msa0822370:intron
TAGTCTCCATCTTTAATAAC+AGG 0.407930 5_3:-60722618 None:intergenic
GATTACGTTGTTAACAATAT+GGG 0.426681 5_3:+60723360 Msa0822370:CDS
AGGAAAGACAATAGAAGAAA+GGG 0.428460 5_3:+60723095 Msa0822370:CDS
ACACCTTCACTACCATGGTT+TGG 0.430225 5_3:-60722333 None:intergenic
TGAAGAGAGTGAAGCAAAGT+TGG 0.434591 5_3:+60723239 Msa0822370:CDS
TCTCAAGGGGTTGAGTTACT+AGG 0.455527 5_3:+60723075 Msa0822370:CDS
GTGAATTAACCTGTAATTTG+AGG 0.477315 5_3:-60722471 None:intergenic
AAATGCTTAAACAAGAGATA+AGG 0.478373 5_3:-60722301 None:intergenic
TGTCCCTATTAATGTCTTGG+AGG 0.483266 5_3:+60722426 Msa0822370:CDS
ACCTGTAATTTGAGGTACTC+AGG 0.483901 5_3:-60722463 None:intergenic
TGCCTCAGCCAAACGTGTGC+TGG 0.487135 5_3:+60722369 Msa0822370:CDS
TAGGAAAGACAATAGAAGAA+AGG 0.489516 5_3:+60723094 Msa0822370:CDS
GTGCCGTCAGCTAGTAGTGC+AGG 0.501569 5_3:-60723198 None:intergenic
ACGTTTGGCTGAGGCACAGT+GGG 0.504539 5_3:-60722362 None:intergenic
TCAAGAACTTTGTTCCATGA+TGG 0.514235 5_3:-60723447 None:intergenic
AGGATTATTTGATAAAGGAT+AGG 0.514814 5_3:+60723385 Msa0822370:CDS
CACCCTCCAAGACATTAATA+GGG 0.516622 5_3:-60722429 None:intergenic
AAGACAAACCAGCACACGTT+TGG 0.517164 5_3:-60722377 None:intergenic
ATACACTTCACTTAAGTTGG+AGG 0.517811 5_3:-60723480 None:intergenic
ATAGGAAGTATGTTAGTGCT+TGG 0.518602 5_3:+60723403 Msa0822370:CDS
GGAAGTATGTTAGTGCTTGG+TGG 0.519087 5_3:+60723406 Msa0822370:CDS
TGATCGGTGGGAATCTTGCT+GGG 0.520663 5_3:-60722223 None:intergenic
GTCCCTATTAATGTCTTGGA+GGG 0.525222 5_3:+60722427 Msa0822370:CDS
ATAACAGGAACAGTTCCAAA+AGG 0.526229 5_3:-60722603 None:intergenic
CGTTGTTAACAATATGGGGA+AGG 0.527650 5_3:+60723365 Msa0822370:CDS
ACCATGGTAGTGAAGGTGTA+TGG 0.535696 5_3:+60722337 Msa0822370:exon
GAAGAGAGTGAAGCAAAGTT+GGG 0.538644 5_3:+60723240 Msa0822370:CDS
CACTACTGAGGTTGATCGGT+GGG 0.542828 5_3:-60722235 None:intergenic
TCAAAGAGCAAGTATTTGGC+TGG 0.546465 5_3:+60723294 Msa0822370:CDS
CAGGTCAAATTGTATGCTGA+TGG 0.554286 5_3:-60723162 None:intergenic
AATAGAAGAAAGGGGTCTTG+TGG 0.555254 5_3:+60723104 Msa0822370:CDS
TGCAGGAAACAAACAATGAC+AGG 0.556705 5_3:-60723181 None:intergenic
AATAATTTAAAGAATAAATG+TGG 0.564414 5_3:+60723650 Msa0822370:three_prime_UTR
TTTCCTGCACTACTAGCTGA+CGG 0.566461 5_3:+60723195 Msa0822370:CDS
AAACCAAACCATGGTAGTGA+AGG 0.577644 5_3:+60722330 Msa0822370:exon
TGTTGAACATTTATGAAGAG+AGG 0.582845 5_3:+60723268 Msa0822370:CDS
TAGTCACTACTGAGGTTGAT+CGG 0.583590 5_3:-60722239 None:intergenic
ATTACGTTGTTAACAATATG+GGG 0.584797 5_3:+60723361 Msa0822370:CDS
AACCAGCACACGTTTGGCTG+AGG 0.587059 5_3:-60722371 None:intergenic
CAACGTAATCCATAAATGGA+AGG 0.591331 5_3:-60723347 None:intergenic
TCTTGCTGGGACTCCACGTA+GGG 0.594461 5_3:-60722210 None:intergenic
ACCATACACCTTCACTACCA+TGG 0.604095 5_3:-60722338 None:intergenic
CTTTAGAGGTTAACAAATCG+TGG 0.614135 5_3:+60723567 Msa0822370:three_prime_UTR
GAGTGAAGCAAAGTTGGGCA+AGG 0.616935 5_3:+60723245 Msa0822370:CDS
AAAGGGGTCTTGTGGAACAA+TGG 0.625869 5_3:+60723112 Msa0822370:CDS
CACGTTTGGCTGAGGCACAG+TGG 0.626355 5_3:-60722363 None:intergenic
TGACGGCACTCCAGATCCAA+AGG 0.632803 5_3:+60723212 Msa0822370:CDS
ATGCTTAAACAAGAGATAAG+GGG 0.636485 5_3:-60722299 None:intergenic
TCACCGCTTCTTGCCCTACG+TGG 0.637143 5_3:+60722197 Msa0822370:five_prime_UTR
ATATAAGTAGTAGACCATCA+TGG 0.637766 5_3:+60723433 Msa0822370:CDS
TGTAACATTTACCACAATCG+TGG 0.645193 5_3:-60723544 None:intergenic
GGAAAGACAATAGAAGAAAG+GGG 0.656416 5_3:+60723096 Msa0822370:CDS
ACTCCACGTAGGGCAAGAAG+CGG 0.656720 5_3:-60722200 None:intergenic
AGGTCAAATTGTATGCTGAT+GGG 0.663491 5_3:-60723161 None:intergenic
CAAGTGAGTAACCACGATTG+TGG 0.671223 5_3:+60723533 Msa0822370:three_prime_UTR
ATCTTGCTGGGACTCCACGT+AGG 0.674770 5_3:-60722211 None:intergenic
TCAAATTGTATGCTGATGGG+TGG 0.678075 5_3:-60723158 None:intergenic
AATGAAGTGAACTAACCAAG+AGG 0.680245 5_3:+60722266 Msa0822370:five_prime_UTR
TTTCAATAGAAACCAAACCA+TGG 0.682075 5_3:+60722321 Msa0822370:exon
GAAGGTGACTCATATCAGCA+AGG 0.682286 5_3:-60723329 None:intergenic
TCACTACTGAGGTTGATCGG+TGG 0.687288 5_3:-60722236 None:intergenic
CATTCTTATAGTCACTACTG+AGG 0.709369 5_3:-60722247 None:intergenic
CGTTTGGCTGAGGCACAGTG+GGG 0.742956 5_3:-60722361 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTAAAGAATAAATG+TGG + chr5_3:60723650-60723669 Msa0822370:three_prime_UTR 10.0%
!! AATAATTTAAAGAATAAATG+TGG + chr5_3:60723650-60723669 Msa0822370:three_prime_UTR 10.0%
!!! TGTGATTTTATTAAACTTAT+CGG + chr5_3:60723596-60723615 Msa0822370:three_prime_UTR 15.0%
!!! TGTGATTTTATTAAACTTAT+CGG + chr5_3:60723596-60723615 Msa0822370:three_prime_UTR 15.0%
!!! ACTTTTTAGCATATTAAACA+AGG - chr5_3:60722517-60722536 None:intergenic 20.0%
!! TCTTATCTACATATTTGATA+TGG + chr5_3:60722701-60722720 Msa0822370:intron 20.0%
!! AAACATATAACCAATAGTAT+TGG - chr5_3:60722863-60722882 None:intergenic 20.0%
!! TTGGTTATATGTTTAAATCT+TGG + chr5_3:60722869-60722888 Msa0822370:intron 20.0%
!!! TTTATTTTAAAGAAGGAAGA+TGG + chr5_3:60723709-60723728 Msa0822370:three_prime_UTR 20.0%
!!! ACTTTTTAGCATATTAAACA+AGG - chr5_3:60722517-60722536 None:intergenic 20.0%
!! TCTTATCTACATATTTGATA+TGG + chr5_3:60722701-60722720 Msa0822370:intron 20.0%
!! AAACATATAACCAATAGTAT+TGG - chr5_3:60722863-60722882 None:intergenic 20.0%
!! TTGGTTATATGTTTAAATCT+TGG + chr5_3:60722869-60722888 Msa0822370:intron 20.0%
! AATGCTTAAACAAGAGATAA+GGG - chr5_3:60722303-60722322 None:intergenic 25.0%
! AAATGCTTAAACAAGAGATA+AGG - chr5_3:60722304-60722323 None:intergenic 25.0%
!!! CAAGATGTTTTAACCATAAA+GGG - chr5_3:60722646-60722665 None:intergenic 25.0%
!!! TCAAGATGTTTTAACCATAA+AGG - chr5_3:60722647-60722666 None:intergenic 25.0%
!!! GGTTTTATGTCTCAAAATTT+TGG + chr5_3:60722753-60722772 Msa0822370:intron 25.0%
!!! AAGACCTCAATTTTTTTTTG+AGG + chr5_3:60722784-60722803 Msa0822370:intron 25.0%
!!! AGACCTCAATTTTTTTTTGA+GGG + chr5_3:60722785-60722804 Msa0822370:intron 25.0%
! TCAACAAGATAATACACTAA+TGG - chr5_3:60722987-60723006 None:intergenic 25.0%
! CTGAAAAATATAGATCTCAA+GGG + chr5_3:60723061-60723080 Msa0822370:CDS 25.0%
! TGAAAAATATAGATCTCAAG+GGG + chr5_3:60723062-60723081 Msa0822370:CDS 25.0%
! TTAACAACGTAATCCATAAA+TGG - chr5_3:60723354-60723373 None:intergenic 25.0%
! GATTACGTTGTTAACAATAT+GGG + chr5_3:60723360-60723379 Msa0822370:CDS 25.0%
! ATTACGTTGTTAACAATATG+GGG + chr5_3:60723361-60723380 Msa0822370:CDS 25.0%
! AGGATTATTTGATAAAGGAT+AGG + chr5_3:60723385-60723404 Msa0822370:CDS 25.0%
!!! CAAACATACACTTAGTTTTT+AGG + chr5_3:60723624-60723643 Msa0822370:three_prime_UTR 25.0%
!!! TCTAAAAAGTTCTAAGAAGA+TGG + chr5_3:60723674-60723693 Msa0822370:three_prime_UTR 25.0%
! AATGCTTAAACAAGAGATAA+GGG - chr5_3:60722303-60722322 None:intergenic 25.0%
! AAATGCTTAAACAAGAGATA+AGG - chr5_3:60722304-60722323 None:intergenic 25.0%
!!! CAAGATGTTTTAACCATAAA+GGG - chr5_3:60722646-60722665 None:intergenic 25.0%
!!! TCAAGATGTTTTAACCATAA+AGG - chr5_3:60722647-60722666 None:intergenic 25.0%
!!! GGTTTTATGTCTCAAAATTT+TGG + chr5_3:60722753-60722772 Msa0822370:intron 25.0%
!!! AAGACCTCAATTTTTTTTTG+AGG + chr5_3:60722784-60722803 Msa0822370:intron 25.0%
!!! AGACCTCAATTTTTTTTTGA+GGG + chr5_3:60722785-60722804 Msa0822370:intron 25.0%
! TCAACAAGATAATACACTAA+TGG - chr5_3:60722987-60723006 None:intergenic 25.0%
! CTGAAAAATATAGATCTCAA+GGG + chr5_3:60723061-60723080 Msa0822370:CDS 25.0%
! TGAAAAATATAGATCTCAAG+GGG + chr5_3:60723062-60723081 Msa0822370:CDS 25.0%
! TTAACAACGTAATCCATAAA+TGG - chr5_3:60723354-60723373 None:intergenic 25.0%
! GATTACGTTGTTAACAATAT+GGG + chr5_3:60723360-60723379 Msa0822370:CDS 25.0%
! ATTACGTTGTTAACAATATG+GGG + chr5_3:60723361-60723380 Msa0822370:CDS 25.0%
! AGGATTATTTGATAAAGGAT+AGG + chr5_3:60723385-60723404 Msa0822370:CDS 25.0%
!!! CAAACATACACTTAGTTTTT+AGG + chr5_3:60723624-60723643 Msa0822370:three_prime_UTR 25.0%
!!! TCTAAAAAGTTCTAAGAAGA+TGG + chr5_3:60723674-60723693 Msa0822370:three_prime_UTR 25.0%
ATGCTTAAACAAGAGATAAG+GGG - chr5_3:60722302-60722321 None:intergenic 30.0%
TTTCAATAGAAACCAAACCA+TGG + chr5_3:60722321-60722340 Msa0822370:exon 30.0%
TGAGAAGAAAATCGAATTTG+AGG + chr5_3:60722402-60722421 Msa0822370:CDS 30.0%
GTGAATTAACCTGTAATTTG+AGG - chr5_3:60722474-60722493 None:intergenic 30.0%
ACTGTTCCTGTTATTAAAGA+TGG + chr5_3:60722612-60722631 Msa0822370:CDS 30.0%
TAGTCTCCATCTTTAATAAC+AGG - chr5_3:60722621-60722640 None:intergenic 30.0%
! AAGTAGAAAAGCATGACATA+GGG - chr5_3:60722670-60722689 None:intergenic 30.0%
! TAAGTAGAAAAGCATGACAT+AGG - chr5_3:60722671-60722690 None:intergenic 30.0%
GCTTGTAAACACTTTAAACA+AGG + chr5_3:60722732-60722751 Msa0822370:intron 30.0%
CTACCCTCAAAAAAAAATTG+AGG - chr5_3:60722791-60722810 None:intergenic 30.0%
TTGAGGGTAGACATAATATT+TGG + chr5_3:60722801-60722820 Msa0822370:intron 30.0%
! CATATAACCAATAGTATTGG+AGG - chr5_3:60722860-60722879 None:intergenic 30.0%
GCTGAAAAATATAGATCTCA+AGG + chr5_3:60723060-60723079 Msa0822370:CDS 30.0%
TAGGAAAGACAATAGAAGAA+AGG + chr5_3:60723094-60723113 Msa0822370:CDS 30.0%
AGGAAAGACAATAGAAGAAA+GGG + chr5_3:60723095-60723114 Msa0822370:CDS 30.0%
TGTTGAACATTTATGAAGAG+AGG + chr5_3:60723268-60723287 Msa0822370:CDS 30.0%
GGATTACGTTGTTAACAATA+TGG + chr5_3:60723359-60723378 Msa0822370:CDS 30.0%
ATATAAGTAGTAGACCATCA+TGG + chr5_3:60723433-60723452 Msa0822370:CDS 30.0%
AAGATACACTTCACTTAAGT+TGG - chr5_3:60723486-60723505 None:intergenic 30.0%
TGGTAAATGTTACACTTTAG+AGG + chr5_3:60723553-60723572 Msa0822370:three_prime_UTR 30.0%
!! AAAAAGTTCTAAGAAGATGG+TGG + chr5_3:60723677-60723696 Msa0822370:three_prime_UTR 30.0%
ATGCTTAAACAAGAGATAAG+GGG - chr5_3:60722302-60722321 None:intergenic 30.0%
TTTCAATAGAAACCAAACCA+TGG + chr5_3:60722321-60722340 Msa0822370:exon 30.0%
TGAGAAGAAAATCGAATTTG+AGG + chr5_3:60722402-60722421 Msa0822370:CDS 30.0%
GTGAATTAACCTGTAATTTG+AGG - chr5_3:60722474-60722493 None:intergenic 30.0%
ACTGTTCCTGTTATTAAAGA+TGG + chr5_3:60722612-60722631 Msa0822370:CDS 30.0%
TAGTCTCCATCTTTAATAAC+AGG - chr5_3:60722621-60722640 None:intergenic 30.0%
! AAGTAGAAAAGCATGACATA+GGG - chr5_3:60722670-60722689 None:intergenic 30.0%
! TAAGTAGAAAAGCATGACAT+AGG - chr5_3:60722671-60722690 None:intergenic 30.0%
GCTTGTAAACACTTTAAACA+AGG + chr5_3:60722732-60722751 Msa0822370:intron 30.0%
CTACCCTCAAAAAAAAATTG+AGG - chr5_3:60722791-60722810 None:intergenic 30.0%
TTGAGGGTAGACATAATATT+TGG + chr5_3:60722801-60722820 Msa0822370:intron 30.0%
! CATATAACCAATAGTATTGG+AGG - chr5_3:60722860-60722879 None:intergenic 30.0%
GCTGAAAAATATAGATCTCA+AGG + chr5_3:60723060-60723079 Msa0822370:CDS 30.0%
TAGGAAAGACAATAGAAGAA+AGG + chr5_3:60723094-60723113 Msa0822370:CDS 30.0%
AGGAAAGACAATAGAAGAAA+GGG + chr5_3:60723095-60723114 Msa0822370:CDS 30.0%
TGTTGAACATTTATGAAGAG+AGG + chr5_3:60723268-60723287 Msa0822370:CDS 30.0%
GGATTACGTTGTTAACAATA+TGG + chr5_3:60723359-60723378 Msa0822370:CDS 30.0%
ATATAAGTAGTAGACCATCA+TGG + chr5_3:60723433-60723452 Msa0822370:CDS 30.0%
AAGATACACTTCACTTAAGT+TGG - chr5_3:60723486-60723505 None:intergenic 30.0%
TGGTAAATGTTACACTTTAG+AGG + chr5_3:60723553-60723572 Msa0822370:three_prime_UTR 30.0%
!! AAAAAGTTCTAAGAAGATGG+TGG + chr5_3:60723677-60723696 Msa0822370:three_prime_UTR 30.0%
CATTCTTATAGTCACTACTG+AGG - chr5_3:60722250-60722269 None:intergenic 35.0%
AATGAAGTGAACTAACCAAG+AGG + chr5_3:60722266-60722285 Msa0822370:five_prime_UTR 35.0%
GGATGAAAGAAAAACAGAAG+AGG - chr5_3:60722496-60722515 None:intergenic 35.0%
ATAACAGGAACAGTTCCAAA+AGG - chr5_3:60722606-60722625 None:intergenic 35.0%
GAAAAGACCTCCAATACTAT+TGG + chr5_3:60722850-60722869 Msa0822370:intron 35.0%
GGAAAGACAATAGAAGAAAG+GGG + chr5_3:60723096-60723115 Msa0822370:CDS 35.0%
AGGTCAAATTGTATGCTGAT+GGG - chr5_3:60723164-60723183 None:intergenic 35.0%
GCTATCAAAGAGCAAGTATT+TGG + chr5_3:60723290-60723309 Msa0822370:CDS 35.0%
TATGAGTCACCTTCCATTTA+TGG + chr5_3:60723338-60723357 Msa0822370:CDS 35.0%
CAACGTAATCCATAAATGGA+AGG - chr5_3:60723350-60723369 None:intergenic 35.0%
GGGGAAGGATTATTTGATAA+AGG + chr5_3:60723380-60723399 Msa0822370:CDS 35.0%
! ATAGGAAGTATGTTAGTGCT+TGG + chr5_3:60723403-60723422 Msa0822370:CDS 35.0%
TCAAGAACTTTGTTCCATGA+TGG - chr5_3:60723450-60723469 None:intergenic 35.0%
!! ATACACTTCACTTAAGTTGG+AGG - chr5_3:60723483-60723502 None:intergenic 35.0%
TGTAACATTTACCACAATCG+TGG - chr5_3:60723547-60723566 None:intergenic 35.0%
! CTTTAGAGGTTAACAAATCG+TGG + chr5_3:60723567-60723586 Msa0822370:three_prime_UTR 35.0%
CATTCTTATAGTCACTACTG+AGG - chr5_3:60722250-60722269 None:intergenic 35.0%
AATGAAGTGAACTAACCAAG+AGG + chr5_3:60722266-60722285 Msa0822370:five_prime_UTR 35.0%
GGATGAAAGAAAAACAGAAG+AGG - chr5_3:60722496-60722515 None:intergenic 35.0%
ATAACAGGAACAGTTCCAAA+AGG - chr5_3:60722606-60722625 None:intergenic 35.0%
GAAAAGACCTCCAATACTAT+TGG + chr5_3:60722850-60722869 Msa0822370:intron 35.0%
GGAAAGACAATAGAAGAAAG+GGG + chr5_3:60723096-60723115 Msa0822370:CDS 35.0%
AGGTCAAATTGTATGCTGAT+GGG - chr5_3:60723164-60723183 None:intergenic 35.0%
GCTATCAAAGAGCAAGTATT+TGG + chr5_3:60723290-60723309 Msa0822370:CDS 35.0%
TATGAGTCACCTTCCATTTA+TGG + chr5_3:60723338-60723357 Msa0822370:CDS 35.0%
CAACGTAATCCATAAATGGA+AGG - chr5_3:60723350-60723369 None:intergenic 35.0%
GGGGAAGGATTATTTGATAA+AGG + chr5_3:60723380-60723399 Msa0822370:CDS 35.0%
! ATAGGAAGTATGTTAGTGCT+TGG + chr5_3:60723403-60723422 Msa0822370:CDS 35.0%
TCAAGAACTTTGTTCCATGA+TGG - chr5_3:60723450-60723469 None:intergenic 35.0%
!! ATACACTTCACTTAAGTTGG+AGG - chr5_3:60723483-60723502 None:intergenic 35.0%
TGTAACATTTACCACAATCG+TGG - chr5_3:60723547-60723566 None:intergenic 35.0%
! CTTTAGAGGTTAACAAATCG+TGG + chr5_3:60723567-60723586 Msa0822370:three_prime_UTR 35.0%
! TAGTCACTACTGAGGTTGAT+CGG - chr5_3:60722242-60722261 None:intergenic 40.0%
!!! AGGGGATTTTTTGAACCTCT+TGG - chr5_3:60722284-60722303 None:intergenic 40.0%
! AAACCAAACCATGGTAGTGA+AGG + chr5_3:60722330-60722349 Msa0822370:exon 40.0%
GGTTGTCCCTATTAATGTCT+TGG + chr5_3:60722423-60722442 Msa0822370:CDS 40.0%
TGTCCCTATTAATGTCTTGG+AGG + chr5_3:60722426-60722445 Msa0822370:CDS 40.0%
GTCCCTATTAATGTCTTGGA+GGG + chr5_3:60722427-60722446 Msa0822370:CDS 40.0%
CACCCTCCAAGACATTAATA+GGG - chr5_3:60722432-60722451 None:intergenic 40.0%
TCACCCTCCAAGACATTAAT+AGG - chr5_3:60722433-60722452 None:intergenic 40.0%
ACCTGAGTACCTCAAATTAC+AGG + chr5_3:60722462-60722481 Msa0822370:CDS 40.0%
! ACCTGTAATTTGAGGTACTC+AGG - chr5_3:60722466-60722485 None:intergenic 40.0%
GATGGAGACTATACCCTTTA+TGG + chr5_3:60722630-60722649 Msa0822370:CDS 40.0%
CATCTATTTGTGCAGAGTCT+CGG + chr5_3:60723019-60723038 Msa0822370:intron 40.0%
ATCTATTTGTGCAGAGTCTC+GGG + chr5_3:60723020-60723039 Msa0822370:intron 40.0%
AATAGAAGAAAGGGGTCTTG+TGG + chr5_3:60723104-60723123 Msa0822370:CDS 40.0%
TCAAATTGTATGCTGATGGG+TGG - chr5_3:60723161-60723180 None:intergenic 40.0%
CAGGTCAAATTGTATGCTGA+TGG - chr5_3:60723165-60723184 None:intergenic 40.0%
TGCAGGAAACAAACAATGAC+AGG - chr5_3:60723184-60723203 None:intergenic 40.0%
TCTTCAATCACCTTTGGATC+TGG - chr5_3:60723225-60723244 None:intergenic 40.0%
TCACTCTCTTCAATCACCTT+TGG - chr5_3:60723231-60723250 None:intergenic 40.0%
TGAAGAGAGTGAAGCAAAGT+TGG + chr5_3:60723239-60723258 Msa0822370:CDS 40.0%
GAAGAGAGTGAAGCAAAGTT+GGG + chr5_3:60723240-60723259 Msa0822370:CDS 40.0%
TCAAAGAGCAAGTATTTGGC+TGG + chr5_3:60723294-60723313 Msa0822370:CDS 40.0%
CGTTGTTAACAATATGGGGA+AGG + chr5_3:60723365-60723384 Msa0822370:CDS 40.0%
! TAGTCACTACTGAGGTTGAT+CGG - chr5_3:60722242-60722261 None:intergenic 40.0%
!!! AGGGGATTTTTTGAACCTCT+TGG - chr5_3:60722284-60722303 None:intergenic 40.0%
! AAACCAAACCATGGTAGTGA+AGG + chr5_3:60722330-60722349 Msa0822370:exon 40.0%
GGTTGTCCCTATTAATGTCT+TGG + chr5_3:60722423-60722442 Msa0822370:CDS 40.0%
TGTCCCTATTAATGTCTTGG+AGG + chr5_3:60722426-60722445 Msa0822370:CDS 40.0%
GTCCCTATTAATGTCTTGGA+GGG + chr5_3:60722427-60722446 Msa0822370:CDS 40.0%
CACCCTCCAAGACATTAATA+GGG - chr5_3:60722432-60722451 None:intergenic 40.0%
TCACCCTCCAAGACATTAAT+AGG - chr5_3:60722433-60722452 None:intergenic 40.0%
ACCTGAGTACCTCAAATTAC+AGG + chr5_3:60722462-60722481 Msa0822370:CDS 40.0%
! ACCTGTAATTTGAGGTACTC+AGG - chr5_3:60722466-60722485 None:intergenic 40.0%
GATGGAGACTATACCCTTTA+TGG + chr5_3:60722630-60722649 Msa0822370:CDS 40.0%
CATCTATTTGTGCAGAGTCT+CGG + chr5_3:60723019-60723038 Msa0822370:intron 40.0%
ATCTATTTGTGCAGAGTCTC+GGG + chr5_3:60723020-60723039 Msa0822370:intron 40.0%
AATAGAAGAAAGGGGTCTTG+TGG + chr5_3:60723104-60723123 Msa0822370:CDS 40.0%
TCAAATTGTATGCTGATGGG+TGG - chr5_3:60723161-60723180 None:intergenic 40.0%
CAGGTCAAATTGTATGCTGA+TGG - chr5_3:60723165-60723184 None:intergenic 40.0%
TGCAGGAAACAAACAATGAC+AGG - chr5_3:60723184-60723203 None:intergenic 40.0%
TCTTCAATCACCTTTGGATC+TGG - chr5_3:60723225-60723244 None:intergenic 40.0%
TCACTCTCTTCAATCACCTT+TGG - chr5_3:60723231-60723250 None:intergenic 40.0%
TGAAGAGAGTGAAGCAAAGT+TGG + chr5_3:60723239-60723258 Msa0822370:CDS 40.0%
GAAGAGAGTGAAGCAAAGTT+GGG + chr5_3:60723240-60723259 Msa0822370:CDS 40.0%
TCAAAGAGCAAGTATTTGGC+TGG + chr5_3:60723294-60723313 Msa0822370:CDS 40.0%
CGTTGTTAACAATATGGGGA+AGG + chr5_3:60723365-60723384 Msa0822370:CDS 40.0%
ACACCTTCACTACCATGGTT+TGG - chr5_3:60722336-60722355 None:intergenic 45.0%
! ACCATGGTAGTGAAGGTGTA+TGG + chr5_3:60722337-60722356 Msa0822370:exon 45.0%
ACCATACACCTTCACTACCA+TGG - chr5_3:60722341-60722360 None:intergenic 45.0%
AAGACAAACCAGCACACGTT+TGG - chr5_3:60722380-60722399 None:intergenic 45.0%
! GTTCACAATCTGCAGCCTTT+TGG + chr5_3:60722588-60722607 Msa0822370:intron 45.0%
TCTCAAGGGGTTGAGTTACT+AGG + chr5_3:60723075-60723094 Msa0822370:CDS 45.0%
! AAAGGGGTCTTGTGGAACAA+TGG + chr5_3:60723112-60723131 Msa0822370:CDS 45.0%
TTTCCTGCACTACTAGCTGA+CGG + chr5_3:60723195-60723214 Msa0822370:CDS 45.0%
GAAGGTGACTCATATCAGCA+AGG - chr5_3:60723332-60723351 None:intergenic 45.0%
! GGAAGTATGTTAGTGCTTGG+TGG + chr5_3:60723406-60723425 Msa0822370:CDS 45.0%
CAAGTGAGTAACCACGATTG+TGG + chr5_3:60723533-60723552 Msa0822370:three_prime_UTR 45.0%
ACACCTTCACTACCATGGTT+TGG - chr5_3:60722336-60722355 None:intergenic 45.0%
! ACCATGGTAGTGAAGGTGTA+TGG + chr5_3:60722337-60722356 Msa0822370:exon 45.0%
ACCATACACCTTCACTACCA+TGG - chr5_3:60722341-60722360 None:intergenic 45.0%
AAGACAAACCAGCACACGTT+TGG - chr5_3:60722380-60722399 None:intergenic 45.0%
! GTTCACAATCTGCAGCCTTT+TGG + chr5_3:60722588-60722607 Msa0822370:intron 45.0%
TCTCAAGGGGTTGAGTTACT+AGG + chr5_3:60723075-60723094 Msa0822370:CDS 45.0%
! AAAGGGGTCTTGTGGAACAA+TGG + chr5_3:60723112-60723131 Msa0822370:CDS 45.0%
TTTCCTGCACTACTAGCTGA+CGG + chr5_3:60723195-60723214 Msa0822370:CDS 45.0%
GAAGGTGACTCATATCAGCA+AGG - chr5_3:60723332-60723351 None:intergenic 45.0%
! GGAAGTATGTTAGTGCTTGG+TGG + chr5_3:60723406-60723425 Msa0822370:CDS 45.0%
CAAGTGAGTAACCACGATTG+TGG + chr5_3:60723533-60723552 Msa0822370:three_prime_UTR 45.0%
!!! TTTTTTTATAAAAATATTTG+TGG - chr5_3:60722898-60722917 None:intergenic 5.0%
!!! TATAAAAAAATCATTTTAAA+AGG + chr5_3:60722908-60722927 Msa0822370:intron 5.0%
!!! TTTATTTTTTATTTTAAAGA+AGG + chr5_3:60723702-60723721 Msa0822370:three_prime_UTR 5.0%
!!! TTTTTTTATAAAAATATTTG+TGG - chr5_3:60722898-60722917 None:intergenic 5.0%
!!! TATAAAAAAATCATTTTAAA+AGG + chr5_3:60722908-60722927 Msa0822370:intron 5.0%
!!! TTTATTTTTTATTTTAAAGA+AGG + chr5_3:60723702-60723721 Msa0822370:three_prime_UTR 5.0%
TGATCGGTGGGAATCTTGCT+GGG - chr5_3:60722226-60722245 None:intergenic 50.0%
TTGATCGGTGGGAATCTTGC+TGG - chr5_3:60722227-60722246 None:intergenic 50.0%
! CACTACTGAGGTTGATCGGT+GGG - chr5_3:60722238-60722257 None:intergenic 50.0%
! TCACTACTGAGGTTGATCGG+TGG - chr5_3:60722239-60722258 None:intergenic 50.0%
GAGTGAAGCAAAGTTGGGCA+AGG + chr5_3:60723245-60723264 Msa0822370:CDS 50.0%
TGATCGGTGGGAATCTTGCT+GGG - chr5_3:60722226-60722245 None:intergenic 50.0%
TTGATCGGTGGGAATCTTGC+TGG - chr5_3:60722227-60722246 None:intergenic 50.0%
! CACTACTGAGGTTGATCGGT+GGG - chr5_3:60722238-60722257 None:intergenic 50.0%
! TCACTACTGAGGTTGATCGG+TGG - chr5_3:60722239-60722258 None:intergenic 50.0%
GAGTGAAGCAAAGTTGGGCA+AGG + chr5_3:60723245-60723264 Msa0822370:CDS 50.0%
ACTCCACGTAGGGCAAGAAG+CGG - chr5_3:60722203-60722222 None:intergenic 55.0%
TCTTGCTGGGACTCCACGTA+GGG - chr5_3:60722213-60722232 None:intergenic 55.0%
ATCTTGCTGGGACTCCACGT+AGG - chr5_3:60722214-60722233 None:intergenic 55.0%
ACGTTTGGCTGAGGCACAGT+GGG - chr5_3:60722365-60722384 None:intergenic 55.0%
AACCAGCACACGTTTGGCTG+AGG - chr5_3:60722374-60722393 None:intergenic 55.0%
TGACGGCACTCCAGATCCAA+AGG + chr5_3:60723212-60723231 Msa0822370:CDS 55.0%
ACTCCACGTAGGGCAAGAAG+CGG - chr5_3:60722203-60722222 None:intergenic 55.0%
TCTTGCTGGGACTCCACGTA+GGG - chr5_3:60722213-60722232 None:intergenic 55.0%
ATCTTGCTGGGACTCCACGT+AGG - chr5_3:60722214-60722233 None:intergenic 55.0%
ACGTTTGGCTGAGGCACAGT+GGG - chr5_3:60722365-60722384 None:intergenic 55.0%
AACCAGCACACGTTTGGCTG+AGG - chr5_3:60722374-60722393 None:intergenic 55.0%
TGACGGCACTCCAGATCCAA+AGG + chr5_3:60723212-60723231 Msa0822370:CDS 55.0%
TCACCGCTTCTTGCCCTACG+TGG + chr5_3:60722197-60722216 Msa0822370:five_prime_UTR 60.0%
CGTTTGGCTGAGGCACAGTG+GGG - chr5_3:60722364-60722383 None:intergenic 60.0%
CACGTTTGGCTGAGGCACAG+TGG - chr5_3:60722366-60722385 None:intergenic 60.0%
TGCCTCAGCCAAACGTGTGC+TGG + chr5_3:60722369-60722388 Msa0822370:CDS 60.0%
GTGCCGTCAGCTAGTAGTGC+AGG - chr5_3:60723201-60723220 None:intergenic 60.0%
TCACCGCTTCTTGCCCTACG+TGG + chr5_3:60722197-60722216 Msa0822370:five_prime_UTR 60.0%
CGTTTGGCTGAGGCACAGTG+GGG - chr5_3:60722364-60722383 None:intergenic 60.0%
CACGTTTGGCTGAGGCACAG+TGG - chr5_3:60722366-60722385 None:intergenic 60.0%
TGCCTCAGCCAAACGTGTGC+TGG + chr5_3:60722369-60722388 Msa0822370:CDS 60.0%
GTGCCGTCAGCTAGTAGTGC+AGG - chr5_3:60723201-60723220 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 60722161 60723731 60722161 ID=Msa0822370;Name=Msa0822370
chr5_3 mRNA 60722161 60723731 60722161 ID=Msa0822370-mRNA-1;Parent=Msa0822370;Name=Msa0822370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=179|1|1|1|1|1|3|240|216
chr5_3 exon 60722161 60722483 60722161 ID=Msa0822370-mRNA-1:exon:18657;Parent=Msa0822370-mRNA-1
chr5_3 exon 60722603 60722651 60722603 ID=Msa0822370-mRNA-1:exon:18658;Parent=Msa0822370-mRNA-1
chr5_3 exon 60723034 60723731 60723034 ID=Msa0822370-mRNA-1:exon:18659;Parent=Msa0822370-mRNA-1
chr5_3 five_prime_UTR 60722161 60722339 60722161 ID=Msa0822370-mRNA-1:five_prime_utr;Parent=Msa0822370-mRNA-1
chr5_3 CDS 60722340 60722483 60722340 ID=Msa0822370-mRNA-1:cds;Parent=Msa0822370-mRNA-1
chr5_3 CDS 60722603 60722651 60722603 ID=Msa0822370-mRNA-1:cds;Parent=Msa0822370-mRNA-1
chr5_3 CDS 60723034 60723491 60723034 ID=Msa0822370-mRNA-1:cds;Parent=Msa0822370-mRNA-1
chr5_3 three_prime_UTR 60723492 60723731 60723492 ID=Msa0822370-mRNA-1:three_prime_utr;Parent=Msa0822370-mRNA-1
Gene Sequence

>Msa0822370

ATGGTAGTGAAGGTGTATGGTCCCCACTGTGCCTCAGCCAAACGTGTGCTGGTTTGTCTTGTTGAGAAGAAAATCGAATTTGAGGTTGTCCCTATTAATGTCTTGGAGGGTGAACACAAGAAACCTGAGTACCTCAAATTACAGCCTTTTGGAACTGTTCCTGTTATTAAAGATGGAGACTATACCCTTTATGAGTCTCGGGCAATAATGAGATACTATGCTGAAAAATATAGATCTCAAGGGGTTGAGTTACTAGGAAAGACAATAGAAGAAAGGGGTCTTGTGGAACAATGGCTAGAAGTTGAAGCACACAACTTCCACCCATCAGCATACAATTTGACCTGTCATTGTTTGTTTCCTGCACTACTAGCTGACGGCACTCCAGATCCAAAGGTGATTGAAGAGAGTGAAGCAAAGTTGGGCAAGGTGTTGAACATTTATGAAGAGAGGCTATCAAAGAGCAAGTATTTGGCTGGTGATTTTTTCAGCCTTGCTGATATGAGTCACCTTCCATTTATGGATTACGTTGTTAACAATATGGGGAAGGATTATTTGATAAAGGATAGGAAGTATGTTAGTGCTTGGTGGAATGATATAAGTAGTAGACCATCATGGAACAAAGTTCTTGAGTTATATAGACCTCCAACTTAA

Protein sequence

>Msa0822370

MVVKVYGPHCASAKRVLVCLVEKKIEFEVVPINVLEGEHKKPEYLKLQPFGTVPVIKDGDYTLYESRAIMRYYAEKYRSQGVELLGKTIEERGLVEQWLEVEAHNFHPSAYNLTCHCLFPALLADGTPDPKVIEESEAKLGKVLNIYEERLSKSKYLAGDFFSLADMSHLPFMDYVVNNMGKDYLIKDRKYVSAWWNDISSRPSWNKVLELYRPPT*