AlfalfaGEDB | Msa0840890

M. sativa cultivar zhongmu-4 / Msa0840890

KEGG: -
GO: -
PFAM: PF05542.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0840890	XP_003612708.1	96.341	410	13	1	1	408	1	410	0.0	807

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0840890	sp\|Q9LVJ0\|UVB31_ARATH	46.707	334	166	6	80	406	91	419	9.22e-95	293

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0840890	G7K9K7	96.341	410	13	1	1	408	1	410	0.0	807

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005630	Msa0840890	0.804921	1.712266e-49	-8.615850e-47
Msa0006050	Msa0840890	0.817352	3.447419e-52	-8.615850e-47
Msa0009890	Msa0840890	0.800856	1.184230e-48	-8.615850e-47
Msa0013810	Msa0840890	0.811162	8.037342e-51	-8.615850e-47
Msa0024330	Msa0840890	0.802371	5.791087e-49	-8.615850e-47
Msa0028280	Msa0840890	0.823598	1.270698e-53	-8.615850e-47
Msa0032450	Msa0840890	0.808394	3.165044e-50	-8.615850e-47
Msa0036580	Msa0840890	-0.807462	4.994641e-50	-8.615850e-47
Msa0041780	Msa0840890	0.844614	6.778895e-59	-8.615850e-47
Msa0044320	Msa0840890	0.823665	1.225408e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0840890	MtrunA17_Chr5g0410131	96.341	410	13	1	1	408	1	410	0.0	807
Msa0840890	MtrunA17_Chr8g0393251	48.512	336	156	7	83	406	89	419	1.82e-103	313
Msa0840890	MtrunA17_Chr6g0479321	43.794	427	208	11	1	406	1	416	4.65e-103	311
Msa0840890	MtrunA17_Chr8g0339211	32.584	356	201	10	67	403	32	367	1.39e-51	177
Msa0840890	MtrunA17_Chr7g0234851	29.278	263	130	8	155	404	1	220	1.10e-19	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0840890	AT1G32160.1	60.326	368	133	6	46	406	43	404	2.98e-152	437
Msa0840890	AT1G48450.1	44.231	364	174	6	64	406	66	421	2.08e-98	300
Msa0840890	AT3G17800.1	46.707	334	166	6	80	406	91	419	9.37e-96	293
Msa0840890	AT3G17800.2	46.707	334	166	6	80	406	97	425	1.39e-95	293
Msa0840890	AT1G48450.3	50.485	206	96	4	64	264	66	270	3.14e-63	206
Msa0840890	AT1G48450.2	50.485	206	96	4	64	264	66	270	4.50e-63	206
Msa0840890	AT3G07310.1	34.615	338	164	7	81	405	60	353	3.72e-51	176
Msa0840890	AT3G07310.2	35.231	281	128	6	135	405	13	249	8.14e-46	159
Msa0840890	AT5G48590.1	32.092	349	173	7	61	403	38	328	4.27e-45	159

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Find 100 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGGCCATCTTTGGA+AGG	0.573455	5_4:+16725745	Msa0840890:CDS
AAATGTATGTACAGTGCATT+AGG	0.415561	5_4:+16726090	Msa0840890:three_prime_UTR
AAGCAAACTCAGGCCATCTT+TGG	0.319554	5_4:+16725741	Msa0840890:CDS
AAGCATAGTCAAGCCTGAGA+AGG	0.589966	5_4:-16725832	None:intergenic
AAGTGAAAGAACTTCATCAT+TGG	0.547625	5_4:-16725808	None:intergenic
AATCAATGATATAGCTTCCT+TGG	0.338228	5_4:-16725715	None:intergenic
AATGGCGGAATTCCGGTGAC+CGG	0.555817	5_4:-16721741	None:intergenic
AATTGATTGCAATTCTAAAC+AGG	0.375403	5_4:+16726011	Msa0840890:three_prime_UTR
ACATGGAAATGGCGGAATTC+CGG	0.346199	5_4:-16721748	None:intergenic
ACTGGTGAAGGCAAATCATC+TGG	0.458702	5_4:+16725630	Msa0840890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTAAGCAATTTGAGCTT+AGG	+	chr5_4:16721894-16721913	Msa0840890:intron	30.0%
AGTTGCAAGTTTAGAAAGAA+AGG	+	chr5_4:16721937-16721956	Msa0840890:intron	30.0%
GTTGCAAGTTTAGAAAGAAA+GGG	+	chr5_4:16721938-16721957	Msa0840890:intron	30.0%
CTTGTTAGTTAGTTAGTTAG+TGG	+	chr5_4:16722184-16722203	Msa0840890:intron	30.0%
TTGTACTAAATAGTGTACTG+TGG	-	chr5_4:16722419-16722438	None:intergenic	30.0%
TAATTATATTTCCTGAGGCT+TGG	+	chr5_4:16722647-16722666	Msa0840890:intron	30.0%
TTGTACTAAATAGCCTATTG+CGG	-	chr5_4:16722833-16722852	None:intergenic	30.0%
GTTATAGCATTGTCATGTAT+TGG	+	chr5_4:16722879-16722898	Msa0840890:intron	30.0%
GGAAAAAATAGTTGGAGAAA+TGG	-	chr5_4:16722982-16723001	None:intergenic	30.0%
AGGTTAAGGGAAAAAATAGT+TGG	-	chr5_4:16722990-16723009	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	16721490	16726196	16721490	ID=Msa0840890;Name=Msa0840890
chr5_4	mRNA	16721490	16726196	16721490	ID=Msa0840890-mRNA-1;Parent=Msa0840890;Name=Msa0840890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=102\|1\|1\|1\|0.66\|0.5\|4\|258\|408
chr5_4	exon	16721490	16721566	16721490	ID=Msa0840890-mRNA-1:exon:7213;Parent=Msa0840890-mRNA-1
chr5_4	exon	16721654	16721810	16721654	ID=Msa0840890-mRNA-1:exon:7214;Parent=Msa0840890-mRNA-1
chr5_4	exon	16723839	16724116	16723839	ID=Msa0840890-mRNA-1:exon:7215;Parent=Msa0840890-mRNA-1
chr5_4	exon	16725122	16726196	16725122	ID=Msa0840890-mRNA-1:exon:7216;Parent=Msa0840890-mRNA-1
chr5_4	five_prime_UTR	16721490	16721566	16721490	ID=Msa0840890-mRNA-1:five_prime_utr;Parent=Msa0840890-mRNA-1
chr5_4	five_prime_UTR	16721654	16721678	16721654	ID=Msa0840890-mRNA-1:five_prime_utr;Parent=Msa0840890-mRNA-1
chr5_4	CDS	16721679	16721810	16721679	ID=Msa0840890-mRNA-1:cds;Parent=Msa0840890-mRNA-1
chr5_4	CDS	16723839	16724116	16723839	ID=Msa0840890-mRNA-1:cds;Parent=Msa0840890-mRNA-1
chr5_4	CDS	16725122	16725938	16725122	ID=Msa0840890-mRNA-1:cds;Parent=Msa0840890-mRNA-1
chr5_4	three_prime_UTR	16725939	16726196	16725939	ID=Msa0840890-mRNA-1:three_prime_utr;Parent=Msa0840890-mRNA-1

Gene Sequence

>Msa0840890

ATGCAAGTTTCAGGTGCTGCAATCAGCGACGTTATGGTGGTTCTTCCATCTTCATCCTTGCTCCGGTCACCGGAATTCCGCCATTTCCATGTTTCTGACGCTAAGAATGTTCTTTCCACTGGATTTCTTAAGAGTTGTCCTCCATCTTACAATGCTAAACATTACAATGAACCCTACAGTTTTCGAGGTAGAGGGTTAGTTGTGAGAGCATCTACAGATTCAAGTGATAATTTTGTGCCTTCTCCTCCTCTCCAATTTGAGTCACCAGTTGGTCAGCTGTTGGAACAAATTTTGCGAACCCATCCTCATTTGTTTTTAGCAACCATTGATCAGCAGCTAGAGAAACTTCAGACTGAAAGAGATGCCCACAAAGAAGAATCGTCTACATCATACGAGGATTCCCTTTATAAGAGGATAGCTGAAATTAAAGAGAAGGAAAAGCGCACAACACTGGAAGAGATAATGTACTGCTTAATCGTGAACAAATTCAAAGAGAACAAAATTTCAATGATCCCAAAAATATCAGCAACCTTAGATCCTAATGAACAAGTGGATTCATGGCCAAATCAAGAGTTTAAGTTAGAAGCTGTTCATTCTTCAGAGGCATTTGAGATGATACAGAGTCACTTATCTCTGGTACTAGGAGAACGGGTTGTGGGTCCTCTCCAGACAATTATTCAGATTAGCAAAATCAAGCTGGGTAAGTTATACGCTGCTTCAATAATGTACGGATATTTTCTCAAACGGGTTGATGAACGGTTTCAACTTGAGAGGTCAGTGGGGACACTTCCACAGGATTTGGGTAAAGAAAATGTTAGTTTTGATGAACCATCGCCACCAAACAAGCTCTGGGATTCAGATTCCTTGATTAGGATCTATCCTGACGACGAAGGTTATTATGAAATGGATGACATGAATACTGGTGAAGGCAAATCATCTGGACTGAGAGATTATGTGACGCAGTTGGATGCGGAGGCACTTCAGAGACTTGCTACCGTACGCTCCAAGGAAGCTATATCATTGATTGAAAAGCAAACTCAGGCCATCTTTGGAAGGCCTGATATCCGCCTCTCTGGCGATGGTTCGATTGAAAGTACCAATGATGAAGTTCTTTCACTTACCTTCTCAGGCTTGACTATGCTTGTTTTGGAATCTGTTGCTTTTGGATCATTCTTATGGGACGAAGAAAACTATGTTGAGTCCAAGTATCCTTTTCTTGCTAAATAG

Protein sequence

>Msa0840890

MQVSGAAISDVMVVLPSSSLLRSPEFRHFHVSDAKNVLSTGFLKSCPPSYNAKHYNEPYSFRGRGLVVRASTDSSDNFVPSPPLQFESPVGQLLEQILRTHPHLFLATIDQQLEKLQTERDAHKEESSTSYEDSLYKRIAEIKEKEKRTTLEEIMYCLIVNKFKENKISMIPKISATLDPNEQVDSWPNQEFKLEAVHSSEAFEMIQSHLSLVLGERVVGPLQTIIQISKIKLGKLYAASIMYGYFLKRVDERFQLERSVGTLPQDLGKENVSFDEPSPPNKLWDSDSLIRIYPDDEGYYEMDDMNTGEGKSSGLRDYVTQLDAEALQRLATVRSKEAISLIEKQTQAIFGRPDIRLSGDGSIESTNDEVLSLTFSGLTMLVLESVAFGSFLWDEENYVESKYPFLAK*