AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073840 MtrunA17_Chr7g0256861 96.513 631 19 1 30 657 1 631 0.0 1256
Msa1073840 MtrunA17_Chr4g0038081 51.016 443 203 3 210 640 127 567 1.36e-157 466
Msa1073840 MtrunA17_Chr4g0020791 26.882 372 212 10 279 609 172 524 1.17e-26 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073840 AT4G10620.1 51.544 421 197 3 225 640 151 569 2.35e-148 443
Msa1073840 AT3G47450.2 27.554 323 191 9 282 580 191 494 9.50e-23 103
Msa1073840 AT3G47450.1 27.554 323 191 9 282 580 191 494 1.76e-22 102

Find 170 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGGAATGTTTGGGTTAT+TGG 0.085783 7_2:-71474730 Msa1073840:CDS
TGTCATTCCTTGAGAAATTA+TGG 0.183490 7_2:-71475171 Msa1073840:CDS
GTGGGAATGTTTGGGTTATT+GGG 0.188366 7_2:-71474729 Msa1073840:CDS
TAGAAAATGCTAATGATATT+TGG 0.196663 7_2:-71473906 Msa1073840:CDS
AGCTGTGAAATCATTGTTTA+AGG 0.200160 7_2:-71474992 Msa1073840:CDS
TAAGTTAAGCGCAGTTTATT+TGG 0.224687 7_2:-71474818 Msa1073840:CDS
CTGGTCCTCGTGGGAATGTT+TGG 0.246265 7_2:-71474738 Msa1073840:CDS
TACGATTCCTCCGCGATTTC+CGG 0.263399 7_2:+71476249 Msa1073850:intron
ACCTCGTTCATATAGAATTA+AGG 0.277501 7_2:-71474467 Msa1073840:intron
ATAGCTTCAGATAGAGCTTT+TGG 0.295364 7_2:+71471842 None:intergenic
GTCAGTTCTCGAAAGGATTT+AGG 0.297754 7_2:-71474796 Msa1073840:CDS
AATCTCATCGACAATAAATA+TGG 0.300320 7_2:+71474535 None:intergenic
TAGTTCTACTGTTGTTGTTA+TGG 0.301404 7_2:-71475055 Msa1073840:CDS
CTCCAACGAGATTGGATAGA+TGG 0.307606 7_2:-71474873 Msa1073840:CDS
GTGAAGCAACCATGAAATTA+TGG 0.320747 7_2:-71471949 Msa1073840:CDS
TTTGAGCTTCAAGTTTAGTT+TGG 0.323380 7_2:+71471813 None:intergenic
GATTTCCGGCCGCGACTTGC+AGG 0.327902 7_2:+71476263 Msa1073850:intron
CTCACGGAAGCTCCAGTTCC+TGG 0.329038 7_2:-71474637 Msa1073840:CDS
CTTGGGATCTTGAGGATTGC+AGG 0.331131 7_2:-71474607 Msa1073840:CDS
CTTCACAGCAAAAGCAATAA+AGG 0.338049 7_2:+71475671 None:intergenic
GAAAGGGAAGTAAAAGTATC+TGG 0.338585 7_2:-71472043 Msa1073840:CDS
AAACAATGTATGTCACTGTT+TGG 0.346253 7_2:-71473963 Msa1073840:CDS
AAATGATGATAAGGTTGATT+TGG 0.346656 7_2:-71475343 Msa1073840:CDS
GGGTTTCTACTATCTCTTCT+TGG 0.353415 7_2:+71475621 None:intergenic
ATCATAGGTCCATAATTTCA+TGG 0.354795 7_2:+71471940 None:intergenic
GATGGTGAAGAAGAAGATAA+AGG 0.359633 7_2:-71475429 Msa1073840:CDS
GTTATTGGGGCTCAAAATGC+TGG 0.360192 7_2:-71474715 Msa1073840:CDS
CCAAGTGTCGTCCCAGGAAC+TGG 0.369142 7_2:+71474625 None:intergenic
TACTGTTGTTGTTATGGTTG+TGG 0.373980 7_2:-71475049 Msa1073840:CDS
ACAAGTTTCTCCAACGAGAT+TGG 0.379460 7_2:-71474881 Msa1073840:CDS
GATAATGATCCAAATCTTCC+TGG 0.381196 7_2:-71475525 Msa1073840:CDS
AGTTATTTCAATTCCATCAT+AGG 0.386223 7_2:+71471925 None:intergenic
CTGAGAAGAAGAGAATGGTT+AGG 0.387392 7_2:-71475236 Msa1073840:CDS
AACAATGTATGTCACTGTTT+GGG 0.388782 7_2:-71473962 Msa1073840:CDS
AATTCCACAACCAGGGCAAA+TGG 0.391823 7_2:+71475557 None:intergenic
CACGCACTTCGCCATTTCTC+AGG 0.407474 7_2:-71475726 Msa1073840:CDS
GGAATAATCATGTTGGCGTC+AGG 0.410123 7_2:-71473885 Msa1073840:CDS
TGGTCCTCGTGGGAATGTTT+GGG 0.416086 7_2:-71474737 Msa1073840:CDS
GTCATTCCTTGAGAAATTAT+GGG 0.419791 7_2:-71475170 Msa1073840:CDS
AGAGAGGGCTAAGAAGAAGA+AGG 0.420566 7_2:-71475268 Msa1073840:CDS
AACTAGGTACATGGAAAGAA+AGG 0.424476 7_2:-71472060 Msa1073840:CDS
AATGATTTCACAGCTGTTCT+CGG 0.425181 7_2:+71475000 None:intergenic
CCAGTTCCTGGGACGACACT+TGG 0.433779 7_2:-71474625 Msa1073840:CDS
GTAGCTACAAGCACAAGCTT+TGG 0.435994 7_2:+71474925 None:intergenic
TTCCGTGAGCTTCGTAACTT+TGG 0.438162 7_2:+71474651 None:intergenic
AATGGTTAGGGAAGCTGAGA+AGG 0.441930 7_2:-71475223 Msa1073840:CDS
TAGTAGTATTACCTGAGAAA+TGG 0.445325 7_2:+71475715 None:intergenic
TGAGAAGAAGAGAATGGTTA+GGG 0.445878 7_2:-71475235 Msa1073840:CDS
GTTGTCGTTTGTAAAGGATT+TGG 0.447908 7_2:-71474761 Msa1073840:CDS
TATTGTCGATGAGATTGAAT+CGG 0.450103 7_2:-71474528 Msa1073840:CDS
AGAGATGAAGATGAAGCTCT+TGG 0.450850 7_2:-71475582 Msa1073840:CDS
GGACCCATTTGCCCTGGTTG+TGG 0.452590 7_2:-71475561 Msa1073840:CDS
CTCTTCCTTCACTCAAAAGT+GGG 0.453940 7_2:+71475601 None:intergenic
AAAGCTCTATCTGAAGCTAT+TGG 0.457900 7_2:-71471839 Msa1073840:CDS
TGGGCAAGTGAAGAATTATA+TGG 0.458506 7_2:-71475151 Msa1073840:CDS
AGCTATACATGTTGGTGGCT+TGG 0.460706 7_2:-71474016 Msa1073840:CDS
TAAAAGTATCTGGATCTAGT+TGG 0.461923 7_2:-71472033 Msa1073840:CDS
ATGAAATTATGGACCTATGA+TGG 0.464155 7_2:-71471938 Msa1073840:CDS
AAAAGTATCTGGATCTAGTT+GGG 0.464693 7_2:-71472032 Msa1073840:CDS
TTCTTATTCCAGCCTCCCAT+TGG 0.467617 7_2:-71472100 Msa1073840:intron
ATTGTCGATGAGATTGAATC+GGG 0.468310 7_2:-71474527 Msa1073840:CDS
AACCTATCAAAATCAAAATC+CGG 0.470968 7_2:+71475114 None:intergenic
GCTCTTGGACCCATTTGCCC+TGG 0.471707 7_2:-71475567 Msa1073840:CDS
ATGATTTCACAGCTGTTCTC+GGG 0.473595 7_2:+71475001 None:intergenic
TCTCTTCCTTCACTCAAAAG+TGG 0.478855 7_2:+71475600 None:intergenic
ACACATGCAGGTGTTGGGTA+TGG 0.479187 7_2:-71475312 Msa1073840:CDS
ATGGTGAAGAAGAAGATAAA+GGG 0.480744 7_2:-71475428 Msa1073840:CDS
GCTCTCCTGCAAGTCGCGGC+CGG 0.482711 7_2:-71476268 Msa1073840:CDS
TCATGTTGGCGTCAGGCTGC+AGG 0.482947 7_2:-71473878 Msa1073840:intron
GAAATCATTGTTTAAGGCGT+TGG 0.489325 7_2:-71474986 Msa1073840:CDS
TAAGGCGTTGGAAGGTATGC+AGG 0.490229 7_2:-71474974 Msa1073840:CDS
AATAACTTTGAGAGAACCAT+TGG 0.493133 7_2:-71471909 Msa1073840:CDS
ATGTGAAGTGTTGTTGAAGA+TGG 0.493552 7_2:+71475752 None:intergenic
CCCATGTGTAGAGAAACATT+TGG 0.496705 7_2:+71473934 None:intergenic
GAGAACCATTGGTACTTGAC+CGG 0.497844 7_2:-71471898 Msa1073840:CDS
ATTCCACAACCAGGGCAAAT+GGG 0.499402 7_2:+71475558 None:intergenic
GCTAAGATGTTTGATACTCC+AGG 0.502024 7_2:-71474568 Msa1073840:CDS
GCTTGTGCTTGTAGCTACTA+AGG 0.503081 7_2:-71474920 Msa1073840:CDS
TATGGCTGAGAATTTGATAC+CGG 0.504603 7_2:-71475133 Msa1073840:CDS
TCTACTATCTCTTCTTGGAG+TGG 0.505813 7_2:+71475626 None:intergenic
CACTTGCCCATAATTTCTCA+AGG 0.508468 7_2:+71475164 None:intergenic
TCGTTTGTAAAGGATTTGGC+TGG 0.510437 7_2:-71474757 Msa1073840:CDS
TCTACACTACACTTGGAAGT+TGG 0.514188 7_2:-71475834 Msa1073840:CDS
CTAAACTTGAAGCTCAAAGA+AGG 0.517692 7_2:-71471808 Msa1073840:CDS
TCCAACGAGATTGGATAGAT+GGG 0.521308 7_2:-71474872 Msa1073840:CDS
GTTCGACACCGTGCAAGTGC+GGG 0.521405 7_2:-71474850 Msa1073840:CDS
AGCTGCACGGTCATTACCAA+TGG 0.522478 7_2:+71472084 None:intergenic
GCGCTCCTCCCGCACTTGCA+CGG 0.523136 7_2:+71474842 None:intergenic
GACATATCAATAGCTGGCTT+AGG 0.523990 7_2:-71471995 Msa1073840:CDS
ATTTCATGGTTGCTTCACCT+TGG 0.524733 7_2:+71471954 None:intergenic
AAAAGCTGAGAAGAAGAGAA+TGG 0.524889 7_2:-71475241 Msa1073840:CDS
AATGCATTTGCGAAGAAAGA+AGG 0.526413 7_2:-71474676 Msa1073840:CDS
TGGTGAAGAAAATGATGATA+AGG 0.530082 7_2:-71475352 Msa1073840:CDS
TGGGAATGTTTGGGTTATTG+GGG 0.530401 7_2:-71474728 Msa1073840:CDS
TATCAATAGCTGGCTTAGGT+TGG 0.531865 7_2:-71471991 Msa1073840:CDS
TGCATGGACATATCAATAGC+TGG 0.534077 7_2:-71472001 Msa1073840:CDS
ACCAAATGTTTCTCTACACA+TGG 0.535533 7_2:-71473935 Msa1073840:CDS
GAATGTGTTGTCGTTTGTAA+AGG 0.536654 7_2:-71474767 Msa1073840:CDS
AATGACCGTGCAGCTGAACT+AGG 0.537048 7_2:-71472076 Msa1073840:CDS
GGTTCGACACCGTGCAAGTG+CGG 0.543827 7_2:-71474851 Msa1073840:CDS
AACAAAAGATGGTTGAGATA+CGG 0.543852 7_2:-71474501 Msa1073840:CDS
TCACGGAAGCTCCAGTTCCT+GGG 0.544460 7_2:-71474636 Msa1073840:CDS
AAATATGGATGCAAGAGCCC+TGG 0.544879 7_2:+71474550 None:intergenic
ACTAGGTACATGGAAAGAAA+GGG 0.546033 7_2:-71472059 Msa1073840:CDS
CAGTTCCTGGGACGACACTT+GGG 0.551841 7_2:-71474624 Msa1073840:CDS
AAGAGGTTACTGTTTGTGCT+AGG 0.552753 7_2:-71475194 Msa1073840:CDS
TTATGAATTAGATGATGAAG+AGG 0.554557 7_2:-71475454 Msa1073840:CDS
GATGATAAGGTTGATTTGGA+TGG 0.555383 7_2:-71475339 Msa1073840:CDS
TTATTTGGTCAGTTCTCGAA+AGG 0.555655 7_2:-71474803 Msa1073840:CDS
CGCGGAGGAATCGTATCCGC+GGG 0.556545 7_2:-71476241 Msa1073840:intron
AAATAAACTGCGCTTAACTT+AGG 0.557086 7_2:+71474820 None:intergenic
ATGGAAGTGAGGTTTGTGGA+GGG 0.559070 7_2:+71475771 None:intergenic
AAGATCCCAAGTGTCGTCCC+AGG 0.560862 7_2:+71474619 None:intergenic
AGTATCAAACATCTTAGCCT+TGG 0.563347 7_2:+71474573 None:intergenic
GAATCGGGAGGAACAAAAGA+TGG 0.563445 7_2:-71474512 Msa1073840:CDS
TTATTGGGGCTCAAAATGCT+GGG 0.563591 7_2:-71474714 Msa1073840:CDS
TATGCAGGAGAATACGAAGA+AGG 0.563855 7_2:-71474959 Msa1073840:CDS
AGCTGAGAAGGTGAAAGAAG+AGG 0.565962 7_2:-71475211 Msa1073840:CDS
TGAGTGGGATTCTGATGAGT+TGG 0.568139 7_2:-71475388 Msa1073840:CDS
GGACGACACTTGGGATCTTG+AGG 0.569949 7_2:-71474615 Msa1073840:CDS
GATATTTGGAATAATCATGT+TGG 0.570181 7_2:-71473892 Msa1073840:CDS
TGCATGAAAATTCCACAACC+AGG 0.571943 7_2:+71475549 None:intergenic
GTATGGTAATGTTACTGAGG+AGG 0.576200 7_2:-71475295 Msa1073840:CDS
TCTACAGTCTACACTACACT+TGG 0.576549 7_2:-71475841 Msa1073840:intron
GCTGCACGGTCATTACCAAT+GGG 0.578102 7_2:+71472085 None:intergenic
TGTTGTTGAAGATGGAAGTG+AGG 0.578584 7_2:+71475760 None:intergenic
ACCCATCTATCCAATCTCGT+TGG 0.580294 7_2:+71474871 None:intergenic
CAAGTCGCGGCCGGAAATCG+CGG 0.581926 7_2:-71476259 Msa1073840:CDS
TTGGAGAAACTTGTGATGGT+AGG 0.582675 7_2:+71474890 None:intergenic
TCATTGTTTAAGGCGTTGGA+AGG 0.583218 7_2:-71474982 Msa1073840:CDS
AAGGATTTGGCTGGTCCTCG+TGG 0.584981 7_2:-71474748 Msa1073840:CDS
TTGATAGGTTGATTTCGACT+AGG 0.590775 7_2:-71475101 Msa1073840:CDS
GAGTTGGAAGCTATGTTACT+TGG 0.590848 7_2:-71475372 Msa1073840:CDS
TTGATGAATCCTGCTGGTAG+TGG 0.594318 7_2:-71475078 Msa1073840:CDS
GTGCAGCTGAACTAGGTACA+TGG 0.597445 7_2:-71472069 Msa1073840:CDS
GGAAGTTGGAAGCGAAGCCA+TGG 0.598719 7_2:-71475820 Msa1073840:CDS
ACTAGGTTGATGAATCCTGC+TGG 0.598821 7_2:-71475084 Msa1073840:CDS
ATGCAGGAGAATACGAAGAA+GGG 0.602640 7_2:-71474958 Msa1073840:CDS
GACATACATTGTTTGAACAG+AGG 0.604222 7_2:+71473972 None:intergenic
GAAGATGGAAGTGAGGTTTG+TGG 0.604625 7_2:+71475767 None:intergenic
GGACAAGCTATACATGTTGG+TGG 0.604671 7_2:-71474021 Msa1073840:CDS
AGGATTTGGCTGGTCCTCGT+GGG 0.608181 7_2:-71474747 Msa1073840:CDS
AGAACCATTGGTACTTGACC+GGG 0.609727 7_2:-71471897 Msa1073840:CDS
CTAAGATGTTTGATACTCCA+GGG 0.609823 7_2:-71474567 Msa1073840:CDS
CTCGTTGGAGAAACTTGTGA+TGG 0.618625 7_2:+71474886 None:intergenic
GCTGGACAAGCTATACATGT+TGG 0.619371 7_2:-71474024 Msa1073840:CDS
TAGTTGGGATGTCAACTGCA+TGG 0.622833 7_2:-71472017 Msa1073840:CDS
GCCTTAATTCTATATGAACG+AGG 0.627354 7_2:+71474466 None:intergenic
CTCGAAAGGATTTAGGTGTG+AGG 0.627464 7_2:-71474789 Msa1073840:CDS
TTAGATGATGAAGAGGATGA+TGG 0.631185 7_2:-71475447 Msa1073840:CDS
TGGGTATGGTAATGTTACTG+AGG 0.631410 7_2:-71475298 Msa1073840:CDS
GTAGAACTACCACTACCAGC+AGG 0.633252 7_2:+71475069 None:intergenic
TCGCGGAGGAATCGTATCCG+CGG 0.643835 7_2:-71476242 Msa1073840:CDS
AGTTGAAGATACAGAATACG+TGG 0.646961 7_2:-71471774 Msa1073840:CDS
TGTAGAGAACAAGATAGCCA+TGG 0.649233 7_2:+71475803 None:intergenic
AGCCAAAGTTACGAAGCTCA+CGG 0.650523 7_2:-71474653 Msa1073840:CDS
GCATGAAAATTCCACAACCA+GGG 0.653706 7_2:+71475550 None:intergenic
TTGAAGATACAGAATACGTG+GGG 0.654387 7_2:-71471772 Msa1073840:CDS
GTCGATGAGATTGAATCGGG+AGG 0.655289 7_2:-71474524 Msa1073840:CDS
GATGGAAGTGAGGTTTGTGG+AGG 0.660712 7_2:+71475770 None:intergenic
ATGTACCTAGTTCAGCTGCA+CGG 0.671351 7_2:+71472071 None:intergenic
AAAGATGGTTGAGATACGGA+AGG 0.671601 7_2:-71474497 Msa1073840:CDS
GTTGAAGATACAGAATACGT+GGG 0.672332 7_2:-71471773 Msa1073840:CDS
CCAAATGTTTCTCTACACAT+GGG 0.676748 7_2:-71473934 Msa1073840:CDS
GCACGGTCATTACCAATGGG+AGG 0.681502 7_2:+71472088 None:intergenic
GTCGCGGCCGGAAATCGCGG+AGG 0.684073 7_2:-71476256 Msa1073840:CDS
AAATGATGATGAGACTGAGT+GGG 0.704615 7_2:-71475403 Msa1073840:CDS
CAAATGATGATGAGACTGAG+TGG 0.710609 7_2:-71475404 Msa1073840:CDS
TGAAGATACAGAATACGTGG+GGG 0.760914 7_2:-71471771 Msa1073840:CDS
ATAACCCAAACATTCCCACG+AGG 0.804924 7_2:+71474733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAAACATAAATTA+GGG + chr7_2:71475899-71475918 None:intergenic 10.0%
!! AAAAATGAAAAACATAAATT+AGG + chr7_2:71475900-71475919 None:intergenic 10.0%
!! AAGAAATTACATACTTTATT+AGG - chr7_2:71474541-71474560 Msa1073840:CDS 15.0%
!! AGAAATTACATACTTTATTA+GGG - chr7_2:71474542-71474561 Msa1073840:CDS 15.0%
!! GAAAAGTAATAAAACATTTA+TGG + chr7_2:71474774-71474793 None:intergenic 15.0%
!! GTGATTAAAAATAAATACTA+TGG + chr7_2:71475700-71475719 None:intergenic 15.0%
!! GAAAAAGTAATTACGAAAAA+TGG - chr7_2:71471817-71471836 Msa1073840:CDS 20.0%
!!! TTAAATGATTTTATGTGTGT+TGG - chr7_2:71473695-71473714 Msa1073840:intron 20.0%
!! TAGAAAATGCTAATGATATT+TGG - chr7_2:71474115-71474134 Msa1073840:intron 20.0%
!! AGACAAATAAATCAATCAAA+TGG + chr7_2:71474250-71474269 None:intergenic 20.0%
!!! TATCTTTTGATTTTCTTAAG+TGG - chr7_2:71474390-71474409 Msa1073840:intron 20.0%
!!! ATCTTTTGATTTTCTTAAGT+GGG - chr7_2:71474391-71474410 Msa1073840:intron 20.0%
!!! TGAAGCATTTTAAACAAATT+GGG + chr7_2:71474570-71474589 None:intergenic 20.0%
!!! TTGAAGCATTTTAAACAAAT+TGG + chr7_2:71474571-71474590 None:intergenic 20.0%
!!! AATTTGTTTAAAATGCTTCA+AGG - chr7_2:71474570-71474589 Msa1073840:CDS 20.0%
!!! ATTTGTTTAAAATGCTTCAA+GGG - chr7_2:71474571-71474590 Msa1073840:CDS 20.0%
!! CAAAAAAAAGAAAAAAGAGA+GGG + chr7_2:71475137-71475156 None:intergenic 20.0%
!! TCAAAAAAAAGAAAAAAGAG+AGG + chr7_2:71475138-71475157 None:intergenic 20.0%
!! AATTTATATTACTAACTAGC+AGG + chr7_2:71475330-71475349 None:intergenic 20.0%
!!! TAATTTTTGTCACATTAATG+TGG + chr7_2:71475490-71475509 None:intergenic 20.0%
!! AATGTGACAAAAATTAAGTA+TGG - chr7_2:71475494-71475513 Msa1073840:CDS 20.0%
! AGAAGAAAATTCTAAACACA+AGG + chr7_2:71471947-71471966 None:intergenic 25.0%
! GAAAATTCTTGTGTCAATTT+GGG - chr7_2:71472020-71472039 Msa1073840:CDS 25.0%
! TTATGAATTAGATGATGAAG+AGG - chr7_2:71472567-71472586 Msa1073840:intron 25.0%
!! AAATGATGATAAGGTTGATT+TGG - chr7_2:71472678-71472697 Msa1073840:intron 25.0%
! AACCTATCAAAATCAAAATC+CGG + chr7_2:71472910-71472929 None:intergenic 25.0%
! AATCTCATCGACAATAAATA+TGG + chr7_2:71473489-71473508 None:intergenic 25.0%
! ATATTGACGTATATTTCACA+AGG - chr7_2:71473934-71473953 Msa1073840:CDS 25.0%
!! GATATTTGGAATAATCATGT+TGG - chr7_2:71474129-71474148 Msa1073840:intron 25.0%
!!! TCTTTTGATTTTCTTAAGTG+GGG - chr7_2:71474392-71474411 Msa1073840:intron 25.0%
! TGGGATTACTTTATAAGTAT+AGG - chr7_2:71474658-71474677 Msa1073840:CDS 25.0%
! TTATAAGTATAGGAGCTTAT+AGG - chr7_2:71474668-71474687 Msa1073840:CDS 25.0%
! ATAGGTATATATAAGCGTAT+AGG - chr7_2:71474686-71474705 Msa1073840:CDS 25.0%
!! AATTTTTACTTGCGTTCAAA+TGG + chr7_2:71474822-71474841 None:intergenic 25.0%
!! AGTTTCCTATCTTGATTTTA+CGG + chr7_2:71474936-71474955 None:intergenic 25.0%
! GGAAACTGTATATTATTGAA+TGG - chr7_2:71474949-71474968 Msa1073840:CDS 25.0%
! AATCTCTGTTATAAAAGAGA+GGG + chr7_2:71475171-71475190 None:intergenic 25.0%
! AAATCTCTGTTATAAAAGAG+AGG + chr7_2:71475172-71475191 None:intergenic 25.0%
! AACAGAGATTTCTTAAAATC+AGG - chr7_2:71475181-71475200 Msa1073840:CDS 25.0%
! ACAGAGATTTCTTAAAATCA+GGG - chr7_2:71475182-71475201 Msa1073840:CDS 25.0%
!!! CACTGTAAGCTTTAAATTAA+AGG + chr7_2:71475391-71475410 None:intergenic 25.0%
! TCACATTAAAGTGTAAATCT+TGG - chr7_2:71475439-71475458 Msa1073840:CDS 25.0%
!!! TACGAAATTAGTTTGTCTAT+AGG - chr7_2:71475606-71475625 Msa1073840:CDS 25.0%
!! CTTCTAATATGCTATGTTTT+GGG + chr7_2:71475739-71475758 None:intergenic 25.0%
! CATATTAGAAGGAAAAAAAC+AGG - chr7_2:71475748-71475767 Msa1073840:CDS 25.0%
!! AGTTATTTCAATTCCATCAT+AGG + chr7_2:71476099-71476118 Msa1073850:five_prime_UTR 25.0%
AAAATTCAGTAAACTCGTTC+AGG + chr7_2:71471854-71471873 None:intergenic 30.0%
! AACGAGTTTACTGAATTTTC+CGG - chr7_2:71471855-71471874 Msa1073840:CDS 30.0%
CGAAAATTCTTGTGTCAATT+TGG - chr7_2:71472019-71472038 Msa1073840:CDS 30.0%
! GATTCTGAACTTTTATACAC+CGG - chr7_2:71472046-71472065 Msa1073840:CDS 30.0%
!! AGTTTAATATCGGTTCAGTT+CGG - chr7_2:71472072-71472091 Msa1073840:CDS 30.0%
TAGTAGTATTACCTGAGAAA+TGG + chr7_2:71472309-71472328 None:intergenic 30.0%
!! TCTTTTTGTTGGTAAAAACC+AGG + chr7_2:71472517-71472536 None:intergenic 30.0%
! TGGTTTTTACCAACAAAAAG+AGG - chr7_2:71472516-71472535 Msa1073840:intron 30.0%
!! CAATTTTGACCTCTTTTTGT+TGG + chr7_2:71472528-71472547 None:intergenic 30.0%
ATGGTGAAGAAGAAGATAAA+GGG - chr7_2:71472593-71472612 Msa1073840:intron 30.0%
TGGTGAAGAAAATGATGATA+AGG - chr7_2:71472669-71472688 Msa1073840:intron 30.0%
TGTCATTCCTTGAGAAATTA+TGG - chr7_2:71472850-71472869 Msa1073840:intron 30.0%
GTCATTCCTTGAGAAATTAT+GGG - chr7_2:71472851-71472870 Msa1073840:intron 30.0%
!!! TACCGGATTTTGATTTTGAT+AGG - chr7_2:71472905-71472924 Msa1073840:intron 30.0%
! TAGTTCTACTGTTGTTGTTA+TGG - chr7_2:71472966-71472985 Msa1073840:intron 30.0%
AGCTGTGAAATCATTGTTTA+AGG - chr7_2:71473029-71473048 Msa1073840:intron 30.0%
AAATAAACTGCGCTTAACTT+AGG + chr7_2:71473204-71473223 None:intergenic 30.0%
TAAGTTAAGCGCAGTTTATT+TGG - chr7_2:71473203-71473222 Msa1073840:intron 30.0%
TATTGTCGATGAGATTGAAT+CGG - chr7_2:71473493-71473512 Msa1073840:intron 30.0%
AACAAAAGATGGTTGAGATA+CGG - chr7_2:71473520-71473539 Msa1073840:intron 30.0%
ACCTCGTTCATATAGAATTA+AGG - chr7_2:71473554-71473573 Msa1073840:intron 30.0%
GTGCATTAGTTAATAGCTAA+CGG - chr7_2:71473653-71473672 Msa1073840:intron 30.0%
ATGTATGTATGTGTCTATGT+AGG - chr7_2:71473823-71473842 Msa1073840:intron 30.0%
!!! ACATGTTGGTTTTAATTTGC+AGG - chr7_2:71473975-71473994 Msa1073840:CDS 30.0%
AAACAATGTATGTCACTGTT+TGG - chr7_2:71474058-71474077 Msa1073840:intron 30.0%
AACAATGTATGTCACTGTTT+GGG - chr7_2:71474059-71474078 Msa1073840:intron 30.0%
AACAAAAGATGGTCAGAATA+TGG + chr7_2:71474223-71474242 None:intergenic 30.0%
!! CAAATGGATTGAACAAAAGA+TGG + chr7_2:71474234-71474253 None:intergenic 30.0%
! CACCATTTACAATTGTTTCT+AGG - chr7_2:71474460-71474479 Msa1073840:intron 30.0%
TGCCTAGAAACAATTGTAAA+TGG + chr7_2:71474465-71474484 None:intergenic 30.0%
CAAGTAAAAATTCCTGTTAG+TGG - chr7_2:71474830-71474849 Msa1073840:CDS 30.0%
! GTTTCCTATCTTGATTTTAC+GGG + chr7_2:71474935-71474954 None:intergenic 30.0%
AAAAATTAAGTATGGCCCAT+GGG - chr7_2:71475502-71475521 Msa1073840:CDS 30.0%
! CCTTCTAATATGCTATGTTT+TGG + chr7_2:71475740-71475759 None:intergenic 30.0%
CCAAAACATAGCATATTAGA+AGG - chr7_2:71475737-71475756 Msa1073840:CDS 30.0%
AAATGATTGATCGTACAGTT+CGG + chr7_2:71475809-71475828 None:intergenic 30.0%
TATCTATTTACCTTAGAGTC+AGG - chr7_2:71475849-71475868 Msa1073840:intron 30.0%
!! TAAAAGTATCTGGATCTAGT+TGG - chr7_2:71475988-71476007 Msa1073840:intron 30.0%
!! AAAAGTATCTGGATCTAGTT+GGG - chr7_2:71475989-71476008 Msa1073840:intron 30.0%
ATCATAGGTCCATAATTTCA+TGG + chr7_2:71476084-71476103 Msa1073850:five_prime_UTR 30.0%
ATGAAATTATGGACCTATGA+TGG - chr7_2:71476083-71476102 Msa1073840:intron 30.0%
! AATAACTTTGAGAGAACCAT+TGG - chr7_2:71476112-71476131 Msa1073840:intron 30.0%
! TTTGAGCTTCAAGTTTAGTT+TGG + chr7_2:71476211-71476230 Msa1073850:intron 30.0%
!! TTCTGTCACAATTTTCTAGC+AGG - chr7_2:71471963-71471982 Msa1073840:CDS 35.0%
!! TCTGTCACAATTTTCTAGCA+GGG - chr7_2:71471964-71471983 Msa1073840:CDS 35.0%
!! ACACCGGTTCAGTTTAATAT+CGG - chr7_2:71472062-71472081 Msa1073840:CDS 35.0%
GAACCGATATTAAACTGAAC+CGG + chr7_2:71472068-71472087 None:intergenic 35.0%
TTCGATTCAACAGTTTGGTT+CGG - chr7_2:71472100-71472119 Msa1073840:intron 35.0%
! GAATGAGATAAACTGGTTCA+GGG + chr7_2:71472154-71472173 None:intergenic 35.0%
! AGAATGAGATAAACTGGTTC+AGG + chr7_2:71472155-71472174 None:intergenic 35.0%
ACAGAGAGAATGAGATAAAC+TGG + chr7_2:71472161-71472180 None:intergenic 35.0%
!! ATGTGAAGTGTTGTTGAAGA+TGG + chr7_2:71472272-71472291 None:intergenic 35.0%
CTTCACAGCAAAAGCAATAA+AGG + chr7_2:71472353-71472372 None:intergenic 35.0%
! TCTTGGAGTGGTTTTTCTTA+TGG + chr7_2:71472386-71472405 None:intergenic 35.0%
GATAATGATCCAAATCTTCC+TGG - chr7_2:71472496-71472515 Msa1073840:intron 35.0%
TGGTAAAAACCAGGAAGATT+TGG + chr7_2:71472508-71472527 None:intergenic 35.0%
TTAGATGATGAAGAGGATGA+TGG - chr7_2:71472574-71472593 Msa1073840:intron 35.0%
GATGGTGAAGAAGAAGATAA+AGG - chr7_2:71472592-71472611 Msa1073840:intron 35.0%
! AAATGATGATGAGACTGAGT+GGG - chr7_2:71472618-71472637 Msa1073840:intron 35.0%
!! GATGATAAGGTTGATTTGGA+TGG - chr7_2:71472682-71472701 Msa1073840:intron 35.0%
AAAAGCTGAGAAGAAGAGAA+TGG - chr7_2:71472780-71472799 Msa1073840:intron 35.0%
TGAGAAGAAGAGAATGGTTA+GGG - chr7_2:71472786-71472805 Msa1073840:intron 35.0%
TGGGCAAGTGAAGAATTATA+TGG - chr7_2:71472870-71472889 Msa1073840:intron 35.0%
TATGGCTGAGAATTTGATAC+CGG - chr7_2:71472888-71472907 Msa1073840:intron 35.0%
!! TTGATAGGTTGATTTCGACT+AGG - chr7_2:71472920-71472939 Msa1073840:intron 35.0%
! TACTGTTGTTGTTATGGTTG+TGG - chr7_2:71472972-71472991 Msa1073840:intron 35.0%
!!! GTGGATTGTGTTGATTTTGA+TGG - chr7_2:71472991-71473010 Msa1073840:intron 35.0%
AATGATTTCACAGCTGTTCT+CGG + chr7_2:71473024-71473043 None:intergenic 35.0%
! GAAATCATTGTTTAAGGCGT+TGG - chr7_2:71473035-71473054 Msa1073840:intron 35.0%
TTATTTGGTCAGTTCTCGAA+AGG - chr7_2:71473218-71473237 Msa1073840:intron 35.0%
! GAATGTGTTGTCGTTTGTAA+AGG - chr7_2:71473254-71473273 Msa1073840:intron 35.0%
! GTTGTCGTTTGTAAAGGATT+TGG - chr7_2:71473260-71473279 Msa1073840:intron 35.0%
AATGCATTTGCGAAGAAAGA+AGG - chr7_2:71473345-71473364 Msa1073840:intron 35.0%
AGTATCAAACATCTTAGCCT+TGG + chr7_2:71473451-71473470 None:intergenic 35.0%
CTAAGATGTTTGATACTCCA+GGG - chr7_2:71473454-71473473 Msa1073840:intron 35.0%
ATTGTCGATGAGATTGAATC+GGG - chr7_2:71473494-71473513 Msa1073840:intron 35.0%
GCCTTAATTCTATATGAACG+AGG + chr7_2:71473558-71473577 None:intergenic 35.0%
GCGAGAAATTATCTGATTTC+TGG - chr7_2:71473730-71473749 Msa1073840:intron 35.0%
CAACTCACTACAGATATTCA+TGG + chr7_2:71473766-71473785 None:intergenic 35.0%
!! TGAGTTGAGTTGAGATTGTA+AGG - chr7_2:71473779-71473798 Msa1073840:intron 35.0%
GCTGTTTGAATCTTACATGT+TGG - chr7_2:71473961-71473980 Msa1073840:CDS 35.0%
GACATACATTGTTTGAACAG+AGG + chr7_2:71474052-71474071 None:intergenic 35.0%
ACCAAATGTTTCTCTACACA+TGG - chr7_2:71474086-71474105 Msa1073840:intron 35.0%
CCAAATGTTTCTCTACACAT+GGG - chr7_2:71474087-71474106 Msa1073840:intron 35.0%
GTGCAAAGTATAACAGGAAA+AGG + chr7_2:71474173-71474192 None:intergenic 35.0%
TCAGTAGTGCAAAGTATAAC+AGG + chr7_2:71474179-71474198 None:intergenic 35.0%
TGTTATACTTTGCACTACTG+AGG - chr7_2:71474178-71474197 Msa1073840:intron 35.0%
! ATTTTGCACAGTTTCTCTGT+TGG - chr7_2:71474321-71474340 Msa1073840:intron 35.0%
! ATTTTCTTAAGTGGGGTTGA+GGG - chr7_2:71474399-71474418 Msa1073840:intron 35.0%
CAATATATTCACTGTGTGTG+AGG + chr7_2:71474497-71474516 None:intergenic 35.0%
CTCACACACAGTGAATATAT+TGG - chr7_2:71474495-71474514 Msa1073840:CDS 35.0%
AAACTGAAGAATAGAACACG+TGG + chr7_2:71474597-71474616 None:intergenic 35.0%
TATATCAGTAGCATGCAAGT+TGG - chr7_2:71474632-71474651 Msa1073840:CDS 35.0%
ATATCAGTAGCATGCAAGTT+GGG - chr7_2:71474633-71474652 Msa1073840:CDS 35.0%
AGAACCCGTAAAATCAAGAT+AGG - chr7_2:71474928-71474947 Msa1073840:CDS 35.0%
AGAATGTAAACCAGAGTTCT+AGG - chr7_2:71475019-71475038 Msa1073840:CDS 35.0%
AAAAGCTGTTAGAGTCAGTT+AGG + chr7_2:71475090-71475109 None:intergenic 35.0%
TAGAAGGAATAAGAGTCTGT+TGG + chr7_2:71475214-71475233 None:intergenic 35.0%
CTTATTCCTTCTATTCAGCT+TGG - chr7_2:71475221-71475240 Msa1073840:CDS 35.0%
CAATAACCAAGCTGAATAGA+AGG + chr7_2:71475230-71475249 None:intergenic 35.0%
CTTCTATTCAGCTTGGTTAT+TGG - chr7_2:71475228-71475247 Msa1073840:CDS 35.0%
ACTGAAAGAAAGATAGTGAC+AGG + chr7_2:71475275-71475294 None:intergenic 35.0%
CAAAAATTAAGTATGGCCCA+TGG - chr7_2:71475501-71475520 Msa1073840:CDS 35.0%
AAAATTAAGTATGGCCCATG+GGG - chr7_2:71475503-71475522 Msa1073840:CDS 35.0%
! TGGTTTTCAGATGTATTGCT+TGG - chr7_2:71475540-71475559 Msa1073840:CDS 35.0%
!!! ATGCTATGTTTTGGGTTACA+AGG + chr7_2:71475731-71475750 None:intergenic 35.0%
ATTTACCTTAGAGTCAGGTT+TGG - chr7_2:71475854-71475873 Msa1073840:intron 35.0%
AACTAGGTACATGGAAAGAA+AGG - chr7_2:71475961-71475980 Msa1073840:intron 35.0%
ACTAGGTACATGGAAAGAAA+GGG - chr7_2:71475962-71475981 Msa1073840:intron 35.0%
!! GAAAGGGAAGTAAAAGTATC+TGG - chr7_2:71475978-71475997 Msa1073840:intron 35.0%
GTGAAGCAACCATGAAATTA+TGG - chr7_2:71476072-71476091 Msa1073840:intron 35.0%
!! CCAAAAACCTGGTTTTTCAA+GGG + chr7_2:71476156-71476175 Msa1073850:five_prime_UTR 35.0%
!! ACCAAAAACCTGGTTTTTCA+AGG + chr7_2:71476157-71476176 Msa1073850:five_prime_UTR 35.0%
! ATAGCTTCAGATAGAGCTTT+TGG + chr7_2:71476182-71476201 Msa1073850:intron 35.0%
! AAAGCTCTATCTGAAGCTAT+TGG - chr7_2:71476182-71476201 Msa1073840:intron 35.0%
CTAAACTTGAAGCTCAAAGA+AGG - chr7_2:71476213-71476232 Msa1073840:intron 35.0%
AGTTGAAGATACAGAATACG+TGG - chr7_2:71476247-71476266 Msa1073840:CDS 35.0%
GTTGAAGATACAGAATACGT+GGG - chr7_2:71476248-71476267 Msa1073840:CDS 35.0%
TTGAAGATACAGAATACGTG+GGG - chr7_2:71476249-71476268 Msa1073840:CDS 35.0%
! GAGTTTACTGAATTTTCCGG+TGG - chr7_2:71471858-71471877 Msa1073840:CDS 40.0%
!! AATATCGGTTCAGTTCGGTT+CGG - chr7_2:71472077-71472096 Msa1073840:CDS 40.0%
! TTCGGTTCGATTCAACAGTT+TGG - chr7_2:71472095-71472114 Msa1073840:intron 40.0%
!!! CAACAGTTTGGTTCGGTTTT+TGG - chr7_2:71472107-71472126 Msa1073840:intron 40.0%
! TAAACTGGTTCAGGGACTTA+GGG + chr7_2:71472146-71472165 None:intergenic 40.0%
! ATAAACTGGTTCAGGGACTT+AGG + chr7_2:71472147-71472166 None:intergenic 40.0%
TCTACAGTCTACACTACACT+TGG - chr7_2:71472180-71472199 Msa1073840:intron 40.0%
TCTACACTACACTTGGAAGT+TGG - chr7_2:71472187-71472206 Msa1073840:intron 40.0%
TGTAGAGAACAAGATAGCCA+TGG + chr7_2:71472221-71472240 None:intergenic 40.0%
TGTTGTTGAAGATGGAAGTG+AGG + chr7_2:71472264-71472283 None:intergenic 40.0%
! GAGTGGTTTTTCTTATGGTG+GGG + chr7_2:71472381-71472400 None:intergenic 40.0%
! GGAGTGGTTTTTCTTATGGT+GGG + chr7_2:71472382-71472401 None:intergenic 40.0%
! TGGAGTGGTTTTTCTTATGG+TGG + chr7_2:71472383-71472402 None:intergenic 40.0%
TCTACTATCTCTTCTTGGAG+TGG + chr7_2:71472398-71472417 None:intergenic 40.0%
GGGTTTCTACTATCTCTTCT+TGG + chr7_2:71472403-71472422 None:intergenic 40.0%
!! AGAAACCCACTTTTGAGTGA+AGG - chr7_2:71472415-71472434 Msa1073840:intron 40.0%
CTCTTCCTTCACTCAAAAGT+GGG + chr7_2:71472423-71472442 None:intergenic 40.0%
TCTCTTCCTTCACTCAAAAG+TGG + chr7_2:71472424-71472443 None:intergenic 40.0%
AGAGATGAAGATGAAGCTCT+TGG - chr7_2:71472439-71472458 Msa1073840:intron 40.0%
GCATGAAAATTCCACAACCA+GGG + chr7_2:71472474-71472493 None:intergenic 40.0%
TGCATGAAAATTCCACAACC+AGG + chr7_2:71472475-71472494 None:intergenic 40.0%
! CAAATGATGATGAGACTGAG+TGG - chr7_2:71472617-71472636 Msa1073840:intron 40.0%
GAGTTGGAAGCTATGTTACT+TGG - chr7_2:71472649-71472668 Msa1073840:intron 40.0%
!! TTGGATGGTTTTACACATGC+AGG - chr7_2:71472697-71472716 Msa1073840:intron 40.0%
! GTTTTACACATGCAGGTGTT+GGG - chr7_2:71472704-71472723 Msa1073840:intron 40.0%
! TGGGTATGGTAATGTTACTG+AGG - chr7_2:71472723-71472742 Msa1073840:intron 40.0%
! GTATGGTAATGTTACTGAGG+AGG - chr7_2:71472726-71472745 Msa1073840:intron 40.0%
!!! TTACTGAGGAGGTTTTAGAG+AGG - chr7_2:71472737-71472756 Msa1073840:intron 40.0%
!!! TACTGAGGAGGTTTTAGAGA+GGG - chr7_2:71472738-71472757 Msa1073840:intron 40.0%
CTGAGAAGAAGAGAATGGTT+AGG - chr7_2:71472785-71472804 Msa1073840:intron 40.0%
AAGAGGTTACTGTTTGTGCT+AGG - chr7_2:71472827-71472846 Msa1073840:intron 40.0%
CACTTGCCCATAATTTCTCA+AGG + chr7_2:71472860-71472879 None:intergenic 40.0%
ATGATTTCACAGCTGTTCTC+GGG + chr7_2:71473023-71473042 None:intergenic 40.0%
!! TCATTGTTTAAGGCGTTGGA+AGG - chr7_2:71473039-71473058 Msa1073840:intron 40.0%
TATGCAGGAGAATACGAAGA+AGG - chr7_2:71473062-71473081 Msa1073840:intron 40.0%
ATGCAGGAGAATACGAAGAA+GGG - chr7_2:71473063-71473082 Msa1073840:intron 40.0%
TTGGAGAAACTTGTGATGGT+AGG + chr7_2:71473134-71473153 None:intergenic 40.0%
ACAAGTTTCTCCAACGAGAT+TGG - chr7_2:71473140-71473159 Msa1073840:intron 40.0%
TCCAACGAGATTGGATAGAT+GGG - chr7_2:71473149-71473168 Msa1073840:intron 40.0%
GTCAGTTCTCGAAAGGATTT+AGG - chr7_2:71473225-71473244 Msa1073840:intron 40.0%
TCGTTTGTAAAGGATTTGGC+TGG - chr7_2:71473264-71473283 Msa1073840:intron 40.0%
! GTGGGAATGTTTGGGTTATT+GGG - chr7_2:71473292-71473311 Msa1073840:intron 40.0%
! TGGGAATGTTTGGGTTATTG+GGG - chr7_2:71473293-71473312 Msa1073840:intron 40.0%
TTATTGGGGCTCAAAATGCT+GGG - chr7_2:71473307-71473326 Msa1073840:intron 40.0%
GCTAAGATGTTTGATACTCC+AGG - chr7_2:71473453-71473472 Msa1073840:intron 40.0%
AAAGATGGTTGAGATACGGA+AGG - chr7_2:71473524-71473543 Msa1073840:intron 40.0%
TAATGTCATAGCGTCGCTAT+AGG + chr7_2:71473862-71473881 None:intergenic 40.0%
!!! GTTGGTTTTAATTTGCAGGC+TGG - chr7_2:71473979-71473998 Msa1073840:CDS 40.0%
CCCATGTGTAGAGAAACATT+TGG + chr7_2:71474090-71474109 None:intergenic 40.0%
CACTACTGAGGAGATACAAT+CGG - chr7_2:71474190-71474209 Msa1073840:intron 40.0%
TATTTGTCTTGATCCCTCTC+TGG - chr7_2:71474261-71474280 Msa1073840:intron 40.0%
GGTCTTGCAAATCTCACTTT+AGG - chr7_2:71474282-71474301 Msa1073840:intron 40.0%
TCACTTTAGGCGTGATATGA+TGG - chr7_2:71474295-71474314 Msa1073840:intron 40.0%
! GATTTTCTTAAGTGGGGTTG+AGG - chr7_2:71474398-71474417 Msa1073840:intron 40.0%
! TTCTGCATTTTCCAACACTG+TGG + chr7_2:71474995-71475014 None:intergenic 40.0%
TTTAGGAGTTCCTAGAACTC+TGG + chr7_2:71475032-71475051 None:intergenic 40.0%
AAAGAAAAAAGAGAGGGCAG+TGG + chr7_2:71475131-71475150 None:intergenic 40.0%
CTCTGTTATAAAAGAGAGGG+CGG + chr7_2:71475168-71475187 None:intergenic 40.0%
!! TCAGCTTGGTTATTGGTCTT+AGG - chr7_2:71475235-71475254 Msa1073840:CDS 40.0%
AAAGCTTACAGTGAGCTATC+AGG - chr7_2:71475398-71475417 Msa1073840:CDS 40.0%
AAGCTTACAGTGAGCTATCA+GGG - chr7_2:71475399-71475418 Msa1073840:CDS 40.0%
!! GAAAATTTGTGCTGCTTGCA+TGG - chr7_2:71475562-71475581 Msa1073840:CDS 40.0%
GTTTGTCTATAGGTCGAGTA+TGG - chr7_2:71475616-71475635 Msa1073840:CDS 40.0%
GGCTCATATTCACTGGTAAA+TGG - chr7_2:71475637-71475656 Msa1073840:CDS 40.0%
TGCATGGACATATCAATAGC+TGG - chr7_2:71476020-71476039 Msa1073840:intron 40.0%
! GACATATCAATAGCTGGCTT+AGG - chr7_2:71476026-71476045 Msa1073840:intron 40.0%
! TATCAATAGCTGGCTTAGGT+TGG - chr7_2:71476030-71476049 Msa1073840:intron 40.0%
!!! TGGCTTAGGTTGGTTTTCTT+TGG - chr7_2:71476040-71476059 Msa1073840:intron 40.0%
!!! GGCTTAGGTTGGTTTTCTTT+GGG - chr7_2:71476041-71476060 Msa1073840:intron 40.0%
! TGGTTTTCTTTGGGTATCCA+AGG - chr7_2:71476050-71476069 Msa1073840:intron 40.0%
ATTTCATGGTTGCTTCACCT+TGG + chr7_2:71476070-71476089 Msa1073850:five_prime_UTR 40.0%
!!! AAACCTGGTTTTTCAAGGGA+CGG + chr7_2:71476152-71476171 Msa1073850:five_prime_UTR 40.0%
! CCCTTGAAAAACCAGGTTTT+TGG - chr7_2:71476153-71476172 Msa1073840:intron 40.0%
!! GCTTTTGGTAACCAAAAACC+TGG + chr7_2:71476167-71476186 Msa1073850:five_prime_UTR 40.0%
TGAAGATACAGAATACGTGG+GGG - chr7_2:71476250-71476269 Msa1073840:CDS 40.0%
TCATCTCATTGTATCACCCG+CGG + chr7_2:71471799-71471818 None:intergenic 45.0%
! TTACTGAATTTTCCGGTGGC+CGG - chr7_2:71471862-71471881 Msa1073840:CDS 45.0%
AGTTGAGTTCAGTTCAGCGA+CGG - chr7_2:71471912-71471931 Msa1073840:CDS 45.0%
! AAACTGGTTCAGGGACTTAG+GGG + chr7_2:71472145-71472164 None:intergenic 45.0%
ATGGAAGTGAGGTTTGTGGA+GGG + chr7_2:71472253-71472272 None:intergenic 45.0%
GAAGATGGAAGTGAGGTTTG+TGG + chr7_2:71472257-71472276 None:intergenic 45.0%
ATTCCACAACCAGGGCAAAT+GGG + chr7_2:71472466-71472485 None:intergenic 45.0%
AATTCCACAACCAGGGCAAA+TGG + chr7_2:71472467-71472486 None:intergenic 45.0%
TGAGTGGGATTCTGATGAGT+TGG - chr7_2:71472633-71472652 Msa1073840:intron 45.0%
! GGTTTTACACATGCAGGTGT+TGG - chr7_2:71472703-71472722 Msa1073840:intron 45.0%
AGAGAGGGCTAAGAAGAAGA+AGG - chr7_2:71472753-71472772 Msa1073840:intron 45.0%
AATGGTTAGGGAAGCTGAGA+AGG - chr7_2:71472798-71472817 Msa1073840:intron 45.0%
AGCTGAGAAGGTGAAAGAAG+AGG - chr7_2:71472810-71472829 Msa1073840:intron 45.0%
!! ACTAGGTTGATGAATCCTGC+TGG - chr7_2:71472937-71472956 Msa1073840:intron 45.0%
TTGATGAATCCTGCTGGTAG+TGG - chr7_2:71472943-71472962 Msa1073840:intron 45.0%
GTAGCTACAAGCACAAGCTT+TGG + chr7_2:71473099-71473118 None:intergenic 45.0%
GCTTGTGCTTGTAGCTACTA+AGG - chr7_2:71473101-71473120 Msa1073840:intron 45.0%
CTCGTTGGAGAAACTTGTGA+TGG + chr7_2:71473138-71473157 None:intergenic 45.0%
CTCCAACGAGATTGGATAGA+TGG - chr7_2:71473148-71473167 Msa1073840:intron 45.0%
ACCCATCTATCCAATCTCGT+TGG + chr7_2:71473153-71473172 None:intergenic 45.0%
CTCGAAAGGATTTAGGTGTG+AGG - chr7_2:71473232-71473251 Msa1073840:intron 45.0%
ATAACCCAAACATTCCCACG+AGG + chr7_2:71473291-71473310 None:intergenic 45.0%
! CGTGGGAATGTTTGGGTTAT+TGG - chr7_2:71473291-71473310 Msa1073840:intron 45.0%
GTTATTGGGGCTCAAAATGC+TGG - chr7_2:71473306-71473325 Msa1073840:intron 45.0%
AGCCAAAGTTACGAAGCTCA+CGG - chr7_2:71473368-71473387 Msa1073840:intron 45.0%
TTCCGTGAGCTTCGTAACTT+TGG + chr7_2:71473373-71473392 None:intergenic 45.0%
! TGCAGGAATTTTGTCAGCCA+AGG - chr7_2:71473431-71473450 Msa1073840:intron 45.0%
AAATATGGATGCAAGAGCCC+TGG + chr7_2:71473474-71473493 None:intergenic 45.0%
GAATCGGGAGGAACAAAAGA+TGG - chr7_2:71473509-71473528 Msa1073840:intron 45.0%
GCTGGACAAGCTATACATGT+TGG - chr7_2:71473997-71474016 Msa1073840:CDS 45.0%
GGACAAGCTATACATGTTGG+TGG - chr7_2:71474000-71474019 Msa1073840:CDS 45.0%
!! AGCTATACATGTTGGTGGCT+TGG - chr7_2:71474005-71474024 Msa1073840:CDS 45.0%
GGAATAATCATGTTGGCGTC+AGG - chr7_2:71474136-71474155 Msa1073840:intron 45.0%
GAGATTTGCAAGACCAGAGA+GGG + chr7_2:71474277-71474296 None:intergenic 45.0%
TGAGATTTGCAAGACCAGAG+AGG + chr7_2:71474278-71474297 None:intergenic 45.0%
! AGTAGCATGCAAGTTGGGAT+TGG - chr7_2:71474638-71474657 Msa1073840:CDS 45.0%
! GTAGCATGCAAGTTGGGATT+GGG - chr7_2:71474639-71474658 Msa1073840:CDS 45.0%
GCAGAACAGTTTCCACTAAC+AGG + chr7_2:71474845-71474864 None:intergenic 45.0%
GTGGAAACTGTTCTGCATCA+TGG - chr7_2:71474849-71474868 Msa1073840:CDS 45.0%
ACTGTTCTGCATCATGGACA+TGG - chr7_2:71474855-71474874 Msa1073840:CDS 45.0%
GAGAGGTTTCTCTCTGGTTA+GGG + chr7_2:71475068-71475087 None:intergenic 45.0%
AGTTAGGAGAGGTTTCTCTC+TGG + chr7_2:71475074-71475093 None:intergenic 45.0%
CTGTTAGAGTCAGTTAGGAG+AGG + chr7_2:71475085-71475104 None:intergenic 45.0%
TGTTATAAAAGAGAGGGCGG+TGG + chr7_2:71475165-71475184 None:intergenic 45.0%
!!! AGTGACAGGACACTGGTTTT+GGG + chr7_2:71475261-71475280 None:intergenic 45.0%
!!! TAGTGACAGGACACTGGTTT+TGG + chr7_2:71475262-71475281 None:intergenic 45.0%
GAAAGATAGTGACAGGACAC+TGG + chr7_2:71475268-71475287 None:intergenic 45.0%
CGAGTATGGCTCATATTCAC+TGG - chr7_2:71475630-71475649 Msa1073840:CDS 45.0%
CATCCAACTGACAGAGACTA+AGG - chr7_2:71475774-71475793 Msa1073840:CDS 45.0%
GACAGAGACTAAGGCACAAT+TGG - chr7_2:71475783-71475802 Msa1073840:CDS 45.0%
GAACACCAAACCTGACTCTA+AGG + chr7_2:71475862-71475881 None:intergenic 45.0%
TTCTTATTCCAGCCTCCCAT+TGG - chr7_2:71475921-71475940 Msa1073840:intron 45.0%
ATGTACCTAGTTCAGCTGCA+CGG + chr7_2:71475953-71475972 None:intergenic 45.0%
TAGTTGGGATGTCAACTGCA+TGG - chr7_2:71476004-71476023 Msa1073840:intron 45.0%
GAGAACCATTGGTACTTGAC+CGG - chr7_2:71476123-71476142 Msa1073840:intron 45.0%
AGAACCATTGGTACTTGACC+GGG - chr7_2:71476124-71476143 Msa1073840:intron 45.0%
!!! AACCTGGTTTTTCAAGGGAC+GGG + chr7_2:71476151-71476170 Msa1073850:five_prime_UTR 45.0%
TACGATTCCTCCGCGATTTC+CGG + chr7_2:71471775-71471794 None:intergenic 50.0%
!!! ACCTACTCCGACTGGTTTTC+CGG - chr7_2:71471887-71471906 Msa1073840:CDS 50.0%
CTGAACTGAACTCAACTCGC+CGG + chr7_2:71471909-71471928 None:intergenic 50.0%
GATGGAAGTGAGGTTTGTGG+AGG + chr7_2:71472254-71472273 None:intergenic 50.0%
!! ACACATGCAGGTGTTGGGTA+TGG - chr7_2:71472709-71472728 Msa1073840:intron 50.0%
GTAGAACTACCACTACCAGC+AGG + chr7_2:71472955-71472974 None:intergenic 50.0%
!! TAAGGCGTTGGAAGGTATGC+AGG - chr7_2:71473047-71473066 Msa1073840:intron 50.0%
TGGTCCTCGTGGGAATGTTT+GGG - chr7_2:71473284-71473303 Msa1073840:intron 50.0%
CTTGGGATCTTGAGGATTGC+AGG - chr7_2:71473414-71473433 Msa1073840:intron 50.0%
GTCGATGAGATTGAATCGGG+AGG - chr7_2:71473497-71473516 Msa1073840:intron 50.0%
!! TAAGTGGGGTTGAGGGTACT+AGG - chr7_2:71474406-71474425 Msa1073840:intron 50.0%
GCTTAAGAGCTCCACAGTGT+TGG - chr7_2:71474981-71475000 Msa1073840:CDS 50.0%
GGAACTCCTAAACCAGAGCT+AGG - chr7_2:71475040-71475059 Msa1073840:CDS 50.0%
GGAGAGGTTTCTCTCTGGTT+AGG + chr7_2:71475069-71475088 None:intergenic 50.0%
AAAAGAGAGGGCAGTGGAGT+GGG + chr7_2:71475125-71475144 None:intergenic 50.0%
AAAAAGAGAGGGCAGTGGAG+TGG + chr7_2:71475126-71475145 None:intergenic 50.0%
GTGAGCTATCAGGGTGATTC+TGG - chr7_2:71475408-71475427 Msa1073840:CDS 50.0%
ACTCAACCTACACTCCCCAT+GGG + chr7_2:71475520-71475539 None:intergenic 50.0%
AACTCAACCTACACTCCCCA+TGG + chr7_2:71475521-71475540 None:intergenic 50.0%
! ATGGGGAGTGTAGGTTGAGT+TGG - chr7_2:71475520-71475539 Msa1073840:CDS 50.0%
GTGCCTTAGTCTCTGTCAGT+TGG + chr7_2:71475780-71475799 None:intergenic 50.0%
GCTGCACGGTCATTACCAAT+GGG + chr7_2:71475939-71475958 None:intergenic 50.0%
AGCTGCACGGTCATTACCAA+TGG + chr7_2:71475940-71475959 None:intergenic 50.0%
AATGACCGTGCAGCTGAACT+AGG - chr7_2:71475945-71475964 Msa1073840:intron 50.0%
GTGCAGCTGAACTAGGTACA+TGG - chr7_2:71475952-71475971 Msa1073840:intron 50.0%
!!! ACCTGGTTTTTCAAGGGACG+GGG + chr7_2:71476150-71476169 Msa1073850:five_prime_UTR 50.0%
ATACAGAATACGTGGGGGCA+AGG - chr7_2:71476255-71476274 Msa1073840:CDS 50.0%
CAACTCGCCGGAAAACCAGT+CGG + chr7_2:71471897-71471916 None:intergenic 55.0%
TGGTTCAGGGACTTAGGGGT+GGG + chr7_2:71472141-71472160 None:intergenic 55.0%
GGAAGTTGGAAGCGAAGCCA+TGG - chr7_2:71472201-71472220 Msa1073840:intron 55.0%
CACGCACTTCGCCATTTCTC+AGG - chr7_2:71472295-71472314 Msa1073840:intron 55.0%
! AAGGATTTGGCTGGTCCTCG+TGG - chr7_2:71473273-71473292 Msa1073840:intron 55.0%
! AGGATTTGGCTGGTCCTCGT+GGG - chr7_2:71473274-71473293 Msa1073840:intron 55.0%
CTGGTCCTCGTGGGAATGTT+TGG - chr7_2:71473283-71473302 Msa1073840:intron 55.0%
TCACGGAAGCTCCAGTTCCT+GGG - chr7_2:71473385-71473404 Msa1073840:intron 55.0%
CAGTTCCTGGGACGACACTT+GGG - chr7_2:71473397-71473416 Msa1073840:intron 55.0%
! AAGATCCCAAGTGTCGTCCC+AGG + chr7_2:71473405-71473424 None:intergenic 55.0%
GGACGACACTTGGGATCTTG+AGG - chr7_2:71473406-71473425 Msa1073840:intron 55.0%
!! TGGGGTTGAGGGTACTAGGT+AGG - chr7_2:71474410-71474429 Msa1073840:intron 55.0%
!! GGGGTTGAGGGTACTAGGTA+GGG - chr7_2:71474411-71474430 Msa1073840:intron 55.0%
!! GGGTTGAGGGTACTAGGTAG+GGG - chr7_2:71474412-71474431 Msa1073840:intron 55.0%
!! AGGGAGCCTAGCTCTGGTTT+AGG + chr7_2:71475049-71475068 None:intergenic 55.0%
GGTCATTACCAATGGGAGGC+TGG + chr7_2:71475932-71475951 None:intergenic 55.0%
GCACGGTCATTACCAATGGG+AGG + chr7_2:71475936-71475955 None:intergenic 55.0%
TGGAGCTCTCCTGCAAGTCG+CGG - chr7_2:71471749-71471768 Msa1073840:CDS 60.0%
TCGCGGAGGAATCGTATCCG+CGG - chr7_2:71471779-71471798 Msa1073840:CDS 60.0%
AACCAGTCGGAGTAGGTCGC+CGG + chr7_2:71471884-71471903 None:intergenic 60.0%
GCCGGAAAACCAGTCGGAGT+AGG + chr7_2:71471891-71471910 None:intergenic 60.0%
CTGGTTCAGGGACTTAGGGG+TGG + chr7_2:71472142-71472161 None:intergenic 60.0%
GCTCTTGGACCCATTTGCCC+TGG - chr7_2:71472454-71472473 Msa1073840:intron 60.0%
GGACCCATTTGCCCTGGTTG+TGG - chr7_2:71472460-71472479 Msa1073840:intron 60.0%
GGTTCGACACCGTGCAAGTG+CGG - chr7_2:71473170-71473189 Msa1073840:intron 60.0%
GTTCGACACCGTGCAAGTGC+GGG - chr7_2:71473171-71473190 Msa1073840:intron 60.0%
CTCACGGAAGCTCCAGTTCC+TGG - chr7_2:71473384-71473403 Msa1073840:intron 60.0%
! CCAAGTGTCGTCCCAGGAAC+TGG + chr7_2:71473399-71473418 None:intergenic 60.0%
CCAGTTCCTGGGACGACACT+TGG - chr7_2:71473396-71473415 Msa1073840:intron 60.0%
TCATGTTGGCGTCAGGCTGC+AGG - chr7_2:71474143-71474162 Msa1073840:intron 60.0%
CTGGTTAGGGAGCCTAGCTC+TGG + chr7_2:71475055-71475074 None:intergenic 60.0%
! GTATGGCCCATGGGGAGTGT+AGG - chr7_2:71475511-71475530 Msa1073840:CDS 60.0%
GGACGAACGCTCGAGTGTAG+CGG - chr7_2:71475658-71475677 Msa1073840:CDS 60.0%
!!! GTTTTTCAAGGGACGGGGCC+CGG + chr7_2:71476145-71476164 Msa1073850:five_prime_UTR 60.0%
GCCCCGTCCCTTGAAAAACC+AGG - chr7_2:71476146-71476165 Msa1073840:intron 60.0%
GATTTCCGGCCGCGACTTGC+AGG + chr7_2:71471761-71471780 None:intergenic 65.0%
CAAGTCGCGGCCGGAAATCG+CGG - chr7_2:71471762-71471781 Msa1073840:CDS 65.0%
CGCGGAGGAATCGTATCCGC+GGG - chr7_2:71471780-71471799 Msa1073840:CDS 65.0%
GGGGCCCGGTCAAGTACCAA+TGG + chr7_2:71476131-71476150 Msa1073850:five_prime_UTR 65.0%
GCTCTCCTGCAAGTCGCGGC+CGG - chr7_2:71471753-71471772 Msa1073840:CDS 70.0%
CGACACCGTGCAAGTGCGGG+AGG - chr7_2:71473174-71473193 Msa1073840:intron 70.0%
GCGCTCCTCCCGCACTTGCA+CGG + chr7_2:71473182-71473201 None:intergenic 70.0%
GTCGCGGCCGGAAATCGCGG+AGG - chr7_2:71471765-71471784 Msa1073840:CDS 75.0%
CGGAGTAGGTCGCCGGCCAC+CGG + chr7_2:71471877-71471896 None:intergenic 75.0%
GGCCGGCGACCTACTCCGAC+TGG - chr7_2:71471879-71471898 Msa1073840:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 71471748 71476295 71471748 ID=Msa1073840;Name=Msa1073840
chr7_2 mRNA 71471748 71476295 71471748 ID=Msa1073840-mRNA-1;Parent=Msa1073840;Name=Msa1073840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.75|1|1|4|0|657
chr7_2 exon 71476242 71476295 71476242 ID=Msa1073840-mRNA-1:exon:16185;Parent=Msa1073840-mRNA-1
chr7_2 exon 71474468 71475856 71474468 ID=Msa1073840-mRNA-1:exon:16184;Parent=Msa1073840-mRNA-1
chr7_2 exon 71473879 71474046 71473879 ID=Msa1073840-mRNA-1:exon:16183;Parent=Msa1073840-mRNA-1
chr7_2 exon 71471748 71472110 71471748 ID=Msa1073840-mRNA-1:exon:16182;Parent=Msa1073840-mRNA-1
chr7_2 CDS 71476242 71476295 71476242 ID=Msa1073840-mRNA-1:cds;Parent=Msa1073840-mRNA-1
chr7_2 CDS 71474468 71475856 71474468 ID=Msa1073840-mRNA-1:cds;Parent=Msa1073840-mRNA-1
chr7_2 CDS 71473879 71474046 71473879 ID=Msa1073840-mRNA-1:cds;Parent=Msa1073840-mRNA-1
chr7_2 CDS 71471748 71472110 71471748 ID=Msa1073840-mRNA-1:cds;Parent=Msa1073840-mRNA-1
Gene Sequence

>Msa1073840

ATGGAGCTCTCCTGCAAGTCGCGGCCGGAAATCGCGGAGGAATCGTATCCGCGGTCTACACTACACTTGGAAGTTGGAAGCGAAGCCATGGCTATCTTGTTCTCTACAATTGCACTTCCCTCCACAAACCTCACTTCCATCTTCAACAACACTTCACATTCTCACGCACTTCGCCATTTCTCAGGTAATACTACTAAACGCTTTCATAAAGCTTCTTCCTTTATTGCTTTTGCTGTGAAGAATAACCCCACCATAAGAAAAACCACTCCAAGAAGAGATAGTAGAAACCCACTTTTGAGTGAAGGAAGAGATGAAGATGAAGCTCTTGGACCCATTTGCCCTGGTTGTGGAATTTTCATGCAAGATAATGATCCAAATCTTCCTGGTTTTTACCAACAAAAAGAGGTCAAAATTGAAGCTTTTTCAGAAGAAGATTATGAATTAGATGATGAAGAGGATGATGGTGAAGAAGAAGATAAAGGGTCAAATGATGATGAGACTGAGTGGGATTCTGATGAGTTGGAAGCTATGTTACTTGGTGAAGAAAATGATGATAAGGTTGATTTGGATGGTTTTACACATGCAGGTGTTGGGTATGGTAATGTTACTGAGGAGGTTTTAGAGAGGGCTAAGAAGAAGAAGGTTTCAAAAGCTGAGAAGAAGAGAATGGTTAGGGAAGCTGAGAAGGTGAAAGAAGAGGTTACTGTTTGTGCTAGGTGTCATTCCTTGAGAAATTATGGGCAAGTGAAGAATTATATGGCTGAGAATTTGATACCGGATTTTGATTTTGATAGGTTGATTTCGACTAGGTTGATGAATCCTGCTGGTAGTGGTAGTTCTACTGTTGTTGTTATGGTTGTGGATTGTGTTGATTTTGATGGTTCTTTCCCGAGAACAGCTGTGAAATCATTGTTTAAGGCGTTGGAAGGTATGCAGGAGAATACGAAGAAGGGTAAGAAACTGCCAAAGCTTGTGCTTGTAGCTACTAAGGTCGATCTCCTACCATCACAAGTTTCTCCAACGAGATTGGATAGATGGGTTCGACACCGTGCAAGTGCGGGAGGAGCGCCTAAGTTAAGCGCAGTTTATTTGGTCAGTTCTCGAAAGGATTTAGGTGTGAGGAATGTGTTGTCGTTTGTAAAGGATTTGGCTGGTCCTCGTGGGAATGTTTGGGTTATTGGGGCTCAAAATGCTGGGAAGTCTACTCTGATCAATGCATTTGCGAAGAAAGAAGGAGCCAAAGTTACGAAGCTCACGGAAGCTCCAGTTCCTGGGACGACACTTGGGATCTTGAGGATTGCAGGAATTTTGTCAGCCAAGGCTAAGATGTTTGATACTCCAGGGCTCTTGCATCCATATTTATTGTCGATGAGATTGAATCGGGAGGAACAAAAGATGGTTGAGATACGGAAGGAACTTAAACCTCGTTCATATAGAATTAAGGCTGGACAAGCTATACATGTTGGTGGCTTGGCAAGACTTGATCTAATTGAAGCCTCTGTTCAAACAATGTATGTCACTGTTTGGGCATCACCAAATGTTTCTCTACACATGGGAAAAATAGAAAATGCTAATGATATTTGGAATAATCATGTTGGCGTCAGGCTGCAGCCTCCCATTGGTAATGACCGTGCAGCTGAACTAGGTACATGGAAAGAAAGGGAAGTAAAAGTATCTGGATCTAGTTGGGATGTCAACTGCATGGACATATCAATAGCTGGCTTAGGTTGGTTTTCTTTGGGTATCCAAGGTGAAGCAACCATGAAATTATGGACCTATGATGGAATTGAAATAACTTTGAGAGAACCATTGGTACTTGACCGGGCCCCGTCCCTTGAAAAACCAGGTTTTTGGTTACCAAAAGCTCTATCTGAAGCTATTGGCAACCAAACTAAACTTGAAGCTCAAAGAAGGAAAAAACTTGAAGTTGAAGATACAGAATACGTGGGGGCAAGGACAGAGATCTCTGCATGA

Protein sequence

>Msa1073840

MELSCKSRPEIAEESYPRSTLHLEVGSEAMAILFSTIALPSTNLTSIFNNTSHSHALRHFSGNTTKRFHKASSFIAFAVKNNPTIRKTTPRRDSRNPLLSEGRDEDEALGPICPGCGIFMQDNDPNLPGFYQQKEVKIEAFSEEDYELDDEEDDGEEEDKGSNDDETEWDSDELEAMLLGEENDDKVDLDGFTHAGVGYGNVTEEVLERAKKKKVSKAEKKRMVREAEKVKEEVTVCARCHSLRNYGQVKNYMAENLIPDFDFDRLISTRLMNPAGSGSSTVVVMVVDCVDFDGSFPRTAVKSLFKALEGMQENTKKGKKLPKLVLVATKVDLLPSQVSPTRLDRWVRHRASAGGAPKLSAVYLVSSRKDLGVRNVLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKEGAKVTKLTEAPVPGTTLGILRIAGILSAKAKMFDTPGLLHPYLLSMRLNREEQKMVEIRKELKPRSYRIKAGQAIHVGGLARLDLIEASVQTMYVTVWASPNVSLHMGKIENANDIWNNHVGVRLQPPIGNDRAAELGTWKEREVKVSGSSWDVNCMDISIAGLGWFSLGIQGEATMKLWTYDGIEITLREPLVLDRAPSLEKPGFWLPKALSEAIGNQTKLEAQRRKKLEVEDTEYVGARTEISA*