AlfalfaGEDB | Msa1229660

M. sativa cultivar zhongmu-4 / Msa1229660

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229660	XP_039684805.1	94.569	534	29	0	1	534	1	534	0.0	987

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229660	sp\|O80792\|RH33_ARATH	47.170	106	43	3	51	149	76	175	1.94e-18	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa1229660	0.842544	2.424078e-58	-8.615850e-47
Msa0001460	Msa1229660	0.821546	3.812075e-53	-8.615850e-47
Msa0001950	Msa1229660	0.839432	1.590583e-57	-8.615850e-47
Msa0003470	Msa1229660	0.840674	7.544120e-58	-8.615850e-47
Msa0004350	Msa1229660	0.804838	1.782026e-49	-8.615850e-47
Msa0006700	Msa1229660	0.826629	2.442688e-54	-8.615850e-47
Msa0007230	Msa1229660	0.837045	6.552250e-57	-8.615850e-47
Msa0008340	Msa1229660	0.819760	9.807930e-53	-8.615850e-47
Msa0008850	Msa1229660	0.844304	8.215206e-59	-8.615850e-47
Msa0011720	Msa1229660	0.839741	1.321860e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229660	MtrunA17_Chr8g0337131	94.569	534	29	0	1	534	1	534	0.0	987
Msa1229660	MtrunA17_Chr8g0337201	93.633	534	34	0	1	534	1	534	0.0	975
Msa1229660	MtrunA17_Chr8g0386451	44.118	102	53	1	51	152	31	128	4.44e-19	90.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229660	AT2G37920.1	80.282	142	28	0	43	184	42	183	2.63e-81	254
Msa1229660	AT2G07750.1	47.170	106	43	3	51	149	76	175	1.97e-19	92.8
Msa1229660	AT1G63250.1	47.000	100	52	1	51	149	26	125	9.17e-19	90.5

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Find 179 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACGGGAATGGAAGG+AGG	0.599763	8_2:-5526434	Msa1229660:CDS
AAAAGAATGGGAATGGAAGG+AGG	0.632027	8_2:-5526551	Msa1229660:CDS
AAATATATGAAATGAGGAAG+AGG	0.565243	8_2:-5526971	Msa1229660:CDS
AACGGGAGTAGGTATTCATT+AGG	0.357075	8_2:-5526195	Msa1229660:CDS
AAGACCGAGTTGAATGTTCG+TGG	0.604006	8_2:-5526231	Msa1229660:CDS
AAGGGTGTTAATGGGTCTAA+TGG	0.352119	8_2:-5525862	Msa1229660:CDS
AATATATGAAATGAGGAAGA+GGG	0.611111	8_2:-5526970	Msa1229660:CDS
AATCTGGTGATATTAGATCG+AGG	0.719396	8_2:-5525915	Msa1229660:CDS
ACCCCACCTGGATACGTCCT+TGG	0.442899	8_2:+5527071	None:intergenic
ACCGAGTTGAATGTTCGTGG+TGG	0.650259	8_2:-5526228	Msa1229660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAGAATGAAAATGACAG+TGG	+	chr8_2:5525684-5525703	None:intergenic	30.0%
TTTGATAGAGAACAACTTAG+GGG	+	chr8_2:5525997-5526016	None:intergenic	30.0%
CTTTGATAGAGAACAACTTA+GGG	+	chr8_2:5525998-5526017	None:intergenic	30.0%
TCACTAGTAACCTTCATATA+AGG	+	chr8_2:5526173-5526192	None:intergenic	30.0%
TCTTCTTCTCCTTTGAATTA+TGG	-	chr8_2:5526278-5526297	Msa1229660:CDS	30.0%
CTTCTTCTCCTTTGAATTAT+GGG	-	chr8_2:5526279-5526298	Msa1229660:CDS	30.0%
GATTCAGAAAGAATGAAAGT+GGG	-	chr8_2:5526561-5526580	Msa1229660:CDS	30.0%
ATTCTTCTTTGAATTCTAGG+AGG	-	chr8_2:5526744-5526763	Msa1229660:CDS	30.0%
CAAATATTGATGCTAGAATG+AGG	-	chr8_2:5526774-5526793	Msa1229660:CDS	30.0%
GATATGGAAAATATACTCAG+AGG	-	chr8_2:5527110-5527129	Msa1229660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	5525651	5527255	5525651	ID=Msa1229660;Name=Msa1229660
chr8_2	mRNA	5525651	5527255	5525651	ID=Msa1229660-mRNA-1;Parent=Msa1229660;Name=Msa1229660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|534
chr8_2	exon	5525651	5527255	5525651	ID=Msa1229660-mRNA-1:exon:1912;Parent=Msa1229660-mRNA-1
chr8_2	CDS	5525651	5527255	5525651	ID=Msa1229660-mRNA-1:cds;Parent=Msa1229660-mRNA-1

Gene Sequence

>Msa1229660

ATGAACGTGTTATCCGCCAATGTGGTACAACCACTGTCATTTTCATTCTCAAAATCTTTGTCAAGTTTTGAATGGCAGAACAAGAACAAGAATGTGCTGTTCCTTACAGTGACTGTAGCAAAACCACCTTCTCGTTCAACTGTGATCCGAATGGGTGGTGGGCCAAGGACGTATCCAGGTGGGGTGTCCAAGTGGCAATGGAAGCGTATGCAGGCCAAGAAGGCCAAGCAACTCTTAAAGGCGCGACTGTGCCGGGAGCGGCAAATATATGAAATGAGGAAGAGGGCTGAGCTTAAGGCTGCTGTGTCTGAGTTGGAGAGGCCTTGGGAGGTGGTTGAGAAGCCCCCTAAGTTGTTCTCTATCAAAGCTGATGAGCAGCTCAAGGTTTTGGCTGATAGGTTTCAGAAGCCTGGTGGGTTTGACCTTTGGACTGAAAATGATGGACCACAGTTGTTTCAAACCCCTGATGAGTTGCCTTCTGCTAGGTACTTTCCTAAAGGGGTTGTTCATAGTATCAAGCCTTATATGAAGGTTACTAGTGATGACTTGTTGGTGGAACCGGATGTTTTGGAAGATGGTGGCGGTGAAGGGTATTGGTCAGAGGATGTTGATGATTGTGAGGGTGGTTCTTCTTCTCCTTTGAATTATGGGAGGGATGAAGTGAATGTTGGCAGTCGATTGCAAAAGAATGGGAATGGAAGGAGGTATTTGTCAGATAATGTTGATCGGTCCCATGATGAGGAGCGTTCTTCTCATTTGAGTGCTGAGAGGAGTGAATTGAATGTTCGTGGTGGATTGAAAAAGAACGGGAATGGAAGGAGGTATTTGTCAGAGGATGTTGTTCGGTCCCTTGATGGAGAGCGTTCTTCTCATTTGAGTACTGGGAGAAGTGAACTGAATGTTCGTGGTGGATTCAGAAAGAATGAAAGTGGGAGGAGTTATTTGCCAGAAGATGTCGATCAGTTCCATGATGGGGAGCGTTCTTCTCATTTGAGTACTAGGAAGACCGAGTTGAATGTTCGTGGTGGATTGAGAAAGAACGGGAGTAGGTATTCATTAGGGGATGTTGATCGGCCAGATAATGAAGATCATTATTCTTCTTTGAATTCTAGGAGGAATGGATCAAATATTGATGCTAGAATGAGGAAGCACGGGAATGGAAGGAAGTTTATTCCAAAGGGTGTAGATGGGTCGGATGATGCAGAGCGTTCTTCTCCTTCACATGCGAGGAATGGAGCGAGTTTTGATGGCAATTTCGGGAATAAAGGGAGTGCAAGGAGGGTTTTATCCAACGATGGTGATGCTGTTAGGTCTAATGAATCTGGTGATATTAGATCGAGGAGGAAGGACAGTGGAAAGAGGTTTATGTCAAAGGGTGTTAATGGGTCTAATGGGATGTATGCAGGAAGAGATGCTTCTGGCAAACCACAGAGAGGGAGTAATTCCATTGCAGGCAGGAGATATGGAAAATATACTCAGAGGACTTCAAACAATGCTTCACGAAGGGTTAGAGATGCAGATTCCGAAGTTTATGATATGGGTTTACAACAAGATGGAAGTTATCAATTCTTACAGAATGAGCAACCTGACTCTACAAGCTGGTAA

Protein sequence

>Msa1229660

MNVLSANVVQPLSFSFSKSLSSFEWQNKNKNVLFLTVTVAKPPSRSTVIRMGGGPRTYPGGVSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSELERPWEVVEKPPKLFSIKADEQLKVLADRFQKPGGFDLWTENDGPQLFQTPDELPSARYFPKGVVHSIKPYMKVTSDDLLVEPDVLEDGGGEGYWSEDVDDCEGGSSSPLNYGRDEVNVGSRLQKNGNGRRYLSDNVDRSHDEERSSHLSAERSELNVRGGLKKNGNGRRYLSEDVVRSLDGERSSHLSTGRSELNVRGGFRKNESGRSYLPEDVDQFHDGERSSHLSTRKTELNVRGGLRKNGSRYSLGDVDRPDNEDHYSSLNSRRNGSNIDARMRKHGNGRKFIPKGVDGSDDAERSSPSHARNGASFDGNFGNKGSARRVLSNDGDAVRSNESGDIRSRRKDSGKRFMSKGVNGSNGMYAGRDASGKPQRGSNSIAGRRYGKYTQRTSNNASRRVRDADSEVYDMGLQQDGSYQFLQNEQPDSTSW*