AlfalfaGEDB | Msa1425250

M. sativa cultivar zhongmu-4 / Msa1425250

KEGG: -
GO: -
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425250	XP_003603974.2	95.462	573	24	1	1	573	1	571	0.0	1147

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425250	sp\|A8MQA3\|PP330_ARATH	39.583	576	336	6	3	573	27	595	7.68e-155	459

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425250	G7J7P9	95.462	573	24	1	1	573	1	571	0.0	1147

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1425250	-0.807720	4.402946e-50	-8.615850e-47
Msa0001950	Msa1425250	0.834521	2.856563e-56	-8.615850e-47
Msa0008340	Msa1425250	0.811669	6.237280e-51	-8.615850e-47
Msa0011720	Msa1425250	0.822346	2.487939e-53	-8.615850e-47
Msa0012440	Msa1425250	0.814539	1.463675e-51	-8.615850e-47
Msa0017940	Msa1425250	0.807978	3.881300e-50	-8.615850e-47
Msa0024680	Msa1425250	0.841211	5.452777e-58	-8.615850e-47
Msa0027540	Msa1425250	0.840572	8.021504e-58	-8.615850e-47
Msa0028060	Msa1425250	0.815803	7.664964e-52	-8.615850e-47
Msa0029540	Msa1425250	-0.811173	7.993283e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425250	MtrunA17_Chr3g0144951	95.462	573	24	1	1	573	1	571	0.0	1147
Msa1425250	MtrunA17_Chr1g0149231	40.415	579	327	6	5	573	42	612	1.54e-151	448
Msa1425250	MtrunA17_Chr2g0285601	39.580	571	336	4	4	573	51	613	4.35e-151	447
Msa1425250	MtrunA17_Chr5g0417311	39.547	574	334	8	4	573	37	601	3.55e-140	419
Msa1425250	MtrunA17_Chr4g0063341	40.000	560	324	6	16	573	189	738	3.90e-140	423
Msa1425250	MtrunA17_Chr4g0063341	29.561	433	263	5	11	408	46	471	2.62e-49	182
Msa1425250	MtrunA17_Chr4g0063341	29.054	296	168	7	118	375	45	336	1.90e-26	114
Msa1425250	MtrunA17_Chr4g0053681	38.386	607	320	8	5	573	36	626	2.31e-138	415
Msa1425250	MtrunA17_Chr6g0476351	36.738	607	334	9	5	573	24	618	5.59e-138	414
Msa1425250	MtrunA17_Chr3g0099291	40.797	527	276	5	78	573	264	785	2.70e-137	417

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425250	AT4G21065.1	39.583	576	336	6	3	573	27	595	7.80e-156	459
Msa1425250	AT5G48910.1	39.444	611	317	6	11	573	41	646	4.17e-152	451
Msa1425250	AT5G66520.1	38.526	597	325	7	11	573	32	620	7.63e-150	445
Msa1425250	AT5G66520.1	25.680	331	206	8	104	399	17	342	7.12e-20	94.0
Msa1425250	AT4G21065.2	44.469	452	248	2	123	573	13	462	9.39e-147	431
Msa1425250	AT4G21065.2	30.645	186	117	3	215	395	4	182	4.61e-19	90.5
Msa1425250	AT4G21065.2	23.529	272	197	6	40	308	37	300	9.31e-18	86.7
Msa1425250	AT1G08070.2	41.030	563	320	6	13	573	85	637	1.21e-143	429
Msa1425250	AT1G08070.2	28.954	373	226	5	63	403	1	366	8.70e-44	166
Msa1425250	AT1G08070.1	41.208	563	319	6	13	573	189	741	1.49e-142	430

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Find 137 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAATATTAAACATTT+TGG	0.156508	tig0025831:+49573	Msa1425250:CDS
AAAGGGACTGGTAAAGCCAC+CGG	0.550914	tig0025831:+49872	Msa1425250:CDS
AAATGGAGATTGCTCTTGTA+AGG	0.355415	tig0025831:+50265	Msa1425250:CDS
AACCTGATGCAGTCATTTGG+AGG	0.575421	tig0025831:+49670	Msa1425250:CDS
AACTTTGCAGGCCCATATCA+GGG	0.582531	tig0025831:-49694	None:intergenic
AAGGAATAAGTAAAGGTATC+TGG	0.373679	tig0025831:-48862	None:intergenic
AAGGGACTGGTAAAGCCACC+GGG	0.559870	tig0025831:+49873	Msa1425250:CDS
AAGGTGTTTCATCAAACGCT+CGG	0.604409	tig0025831:-49736	None:intergenic
AATGCAGGCTTGGTTCGTGA+AGG	0.629413	tig0025831:+49510	Msa1425250:CDS
AATGCTCGAGATGGACGATG+AGG	0.685305	tig0025831:+50043	Msa1425250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGCAAAGGAATAAGTAA+AGG	-	tig0025831:48872-48891	None:intergenic	30.0%
TAATCATGATCTAACTGTTG+AGG	+	tig0025831:49101-49120	Msa1425250:CDS	30.0%
AGGGAACTGATGAATAAAAA+GGG	+	tig0025831:49855-49874	Msa1425250:CDS	30.0%
TGTTGTACATGAATTTGTGA+TGG	+	tig0025831:49920-49939	Msa1425250:CDS	30.0%
GTTGTACATGAATTTGTGAT+GGG	+	tig0025831:49921-49940	Msa1425250:CDS	30.0%
AGAGAAAATCTTCACCAAAT+TGG	+	tig0025831:49965-49984	Msa1425250:CDS	30.0%
GTAGATAAACTGAGAAAAGA+AGG	+	tig0025831:49996-50015	Msa1425250:CDS	30.0%
GTTCATGAAACTAATCTCTA+AGG	+	tig0025831:50190-50209	Msa1425250:CDS	30.0%
ATTGCTCTTGTAAGGATTAT+TGG	+	tig0025831:50273-50292	Msa1425250:CDS	30.0%
CAAAGCAAAGGAATAAGTAA+AGG	-	tig0025831:48872-48891	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025831	gene	48577	50298	48577	ID=Msa1425250;Name=Msa1425250
tig0025831	mRNA	48577	50298	48577	ID=Msa1425250-mRNA-1;Parent=Msa1425250;Name=Msa1425250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|573
tig0025831	exon	48577	50298	48577	ID=Msa1425250-mRNA-1:exon:4187;Parent=Msa1425250-mRNA-1
tig0025831	CDS	48577	50298	48577	ID=Msa1425250-mRNA-1:cds;Parent=Msa1425250-mRNA-1

Gene Sequence

>Msa1425250

ATGGATGTAACAAGCATGTCCCAAGCTCTGCAACTTCACGCTCAATTCCTAAAATCCGAACCCCAAAATCAACGAAACTTCTCAAAGCTCTTCACTTTCGCTGCTCAATCACCTTCCGGCGACCTCAACTACGCTCGTCTTCTTCTCAACACCAACCCATCTCTCAACTCTTACTACTACAACACCATCATTCGTGCTTATTCTCATAGTTCCAACCCTACCCATCATTTTCAAGCACTTTCTCTCTTCATTTTCATGCTTCAACCACACACCAATGTACCCAAACCAGATACCTTTACTTATTCCTTTGCTTTGAAGTGTTGTGGACGTTTGAAACTTACCCAACAAGCAAAACAGCTTCTTGGCTTGATAAATAAGATGGGTTTTGGTAACGATTTATATATTCAAAACGCGCTTATTCACATGTACTCTGAAATTGGTGATTTGGGTATTGCACGTCAAGTGTTTGATAGAATGTCTCATAGAGATGTGGTTTCTTGGACGTCTATGATTGATGGTTTTGTTAATCATGATCTAACTGTTGAGGCAATTCAGTTGTTTGAGAGAATGTTGGAAGGTGGAGTGGATGTCAATGAGGCTACGGTCATTTCTGTTTTGAGAGGTTGTGCGGATTCAGGGGCGTTGAGTGTGGGGAGGAAAGTGCATGGGATTGTGAAGGAGAAGGGGATTGATTTGAACAGTAATGTTTGTACTGCGCTTATTCATATGTATTCAAAATGTGGGTGTTTAGAGAGTGCAAAGGAGGTGTTTGATGATGTTTTGGATAGAGATGTTTTTGTTTGGACTGCGATGATTTCTGGCCTTGCTTGTCACGGGATGTGTAAAGAAGCTATTGAGTTGTTTGTTGAAATGGAAACTTGTAATGTAAAACCCGATGAGAGGACAATTATGGTGGTTTTATCAGCTTATAGGAATGCAGGCTTGGTTCGTGAAGGTTACATGTTTTTCAATGATGTCCAAAAGCGTTACAGTATGAAACCCAATATTAAACATTTTGGTTGCATGGTGGACCTCCTTGCAAAAGGGGGGTGTTTGGAGGAAGCTGAAGATTTCATTAATGCAATGCCAATGAAACCTGATGCAGTCATTTGGAGGACCCTGATATGGGCCTGCAAAGTTCATGCCGATACAGAAAGAGCCGAGCGTTTGATGAAACACCTTGAGCTGCAAGGTATGAGTGCACATGACAGTGGAAGTTATATACTTGCTAGTAATGTTTATGCCTCGACGGGGAAGTGGTGTGATAAGGCAGAGGTGAGGGAACTGATGAATAAAAAGGGACTGGTAAAGCCACCGGGGTCTAGTAGGATTGAAGTTGATGGTGTTGTACATGAATTTGTGATGGGAGATTATGATCACCCTGACGCAGAGAAAATCTTCACCAAATTGGATCAGATGGTAGATAAACTGAGAAAAGAAGGGTATAATCCAAAAGTATCAGAGGTAATGCTCGAGATGGACGATGAGGAGAAGGCCATTCAGTTGCTTCACCATAGTGAGAAGCTAGCTCTTGCCTATGGATTGATCAGGACATGTCCTGGGTCAAAAATCAGGATTGTGAAGAACCTAAGGTCTTGTGAGGATTGTCACGAGTTCATGAAACTAATCTCTAAGGTATACCAAAGAGACATTACAGTGAGAGACAGAATTCGTTTCCATCATTTTAAAAATGGAGATTGCTCTTGTAAGGATTATTGGTAG

Protein sequence

>Msa1425250

MDVTSMSQALQLHAQFLKSEPQNQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSHSSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKCCGRLKLTQQAKQLLGLINKMGFGNDLYIQNALIHMYSEIGDLGIARQVFDRMSHRDVVSWTSMIDGFVNHDLTVEAIQLFERMLEGGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDLNSNVCTALIHMYSKCGCLESAKEVFDDVLDRDVFVWTAMISGLACHGMCKEAIELFVEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDAEKIFTKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDITVRDRIRFHHFKNGDCSCKDYW*