AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854590 MtrunA17_Chr5g0423271 96.193 394 10 2 1 393 1 390 0.0 785
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854590 AT1G48520.1 73.116 398 96 2 1 391 1 394 0.0 624
Msa0854590 AT1G48520.2 73.116 398 96 2 1 391 1 394 0.0 624
Msa0854590 AT1G48520.3 73.116 398 96 2 1 391 1 394 0.0 624

Find 87 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGGTTGGTTAGGTATT+TGG 0.118798 5_4:-47209071 Msa0854590:CDS
ATTGAGTTTGCTGTTAAATT+AGG 0.201148 5_4:-47211097 Msa0854590:CDS
ATTATTGGTTCGTAGTCTTT+TGG 0.227258 5_4:+47211265 None:intergenic
CAGAGGTTGGTTAGGTATTT+GGG 0.234354 5_4:-47209070 Msa0854590:CDS
GATGTTCCGATTGCGAGTTC+TGG 0.238658 5_4:-47210977 Msa0854590:CDS
TGTGTTTCAATTCCGATTAT+TGG 0.255932 5_4:+47211250 None:intergenic
CCCATTGGGCAGTCAAAGTT+TGG 0.259802 5_4:-47208986 Msa0854590:CDS
GTTTCGTTTGTGTTTGTGTT+TGG 0.283532 5_4:+47211326 None:intergenic
TAGTACAGGAAACTCGATTC+TGG 0.297778 5_4:-47208752 Msa0854590:CDS
TTTCACAGGTTGATCTAAAC+AGG 0.303878 5_4:-47209174 Msa0854590:intron
CAGCATTTGTCCAGTTTGTA+TGG 0.316239 5_4:-47211158 Msa0854590:CDS
GTTGATATTCCTTTGGAGTA+TGG 0.319525 5_4:-47210944 Msa0854590:CDS
AAGTTGTTGCATACTGAAAA+TGG 0.322289 5_4:-47210866 Msa0854590:CDS
TTTCGTTTGTGTTTGTGTTT+GGG 0.350456 5_4:+47211327 None:intergenic
CGTTTGATTCTAAGTTTGAT+AGG 0.356371 5_4:-47211051 Msa0854590:CDS
TGGTATTCAAAATTCTTTAC+CGG 0.373277 5_4:-47208506 Msa0854590:CDS
ATGTTCCGATTGCGAGTTCT+GGG 0.375435 5_4:-47210976 Msa0854590:CDS
TCTTGATGTTGATATTCCTT+TGG 0.376577 5_4:-47210951 Msa0854590:CDS
CCAGTTTGTATGGGGTTACC+TGG 0.398898 5_4:-47211148 Msa0854590:CDS
CAGAATTACAGAGGTTGGTT+AGG 0.400205 5_4:-47209078 Msa0854590:CDS
GAGGTTGGGTAGAGTAGAAA+AGG 0.402713 5_4:+47211406 None:intergenic
TGATAGCCTTTAGGCAAATC+AGG 0.403892 5_4:+47211013 None:intergenic
AGAGTAGAAAAGGTTGAAGT+TGG 0.404359 5_4:+47211416 None:intergenic
TGCGAAATCTGATAGCCTTT+AGG 0.408338 5_4:+47211004 None:intergenic
TGGGATTACTAGGGTTCATA+TGG 0.413274 5_4:-47210903 Msa0854590:CDS
GGTGGTGGGCATAAGAGGTT+TGG 0.415987 5_4:-47210923 Msa0854590:CDS
AGTATGGTGGTGGGCATAAG+AGG 0.418164 5_4:-47210928 Msa0854590:CDS
ATAAGAGGTTTGGGATTACT+AGG 0.423820 5_4:-47210913 Msa0854590:CDS
ACTGATGGAAGGTCTGGTTC+TGG 0.424146 5_4:+47208553 None:intergenic
TGGAAATGAGCCGTAATTGT+AGG 0.424453 5_4:+47211186 None:intergenic
AGATATGAAAAGATGGGATT+AGG 0.425555 5_4:-47208460 Msa0854590:CDS
GTAGTTTGAGGATTGAGGTT+GGG 0.426523 5_4:+47211392 None:intergenic
TCAATACCATTTCTCATGTC+AGG 0.427491 5_4:+47209118 None:intergenic
ATAACCTTACTGTTTAAAAC+AGG 0.429595 5_4:+47211118 None:intergenic
CCAGGTAACCCCATACAAAC+TGG 0.430597 5_4:+47211148 None:intergenic
TGTAGTTTGAGGATTGAGGT+TGG 0.434281 5_4:+47211391 None:intergenic
TGTAACTGTCCCTACAATTA+CGG 0.438576 5_4:-47211196 Msa0854590:CDS
ACTGGACAAATGCTGGTGTT+TGG 0.439406 5_4:+47211166 None:intergenic
GTGGTGGGCATAAGAGGTTT+GGG 0.440851 5_4:-47210922 Msa0854590:CDS
CCAAACTTTGACTGCCCAAT+GGG 0.448775 5_4:+47208986 None:intergenic
AGCATTTGTCCAGTTTGTAT+GGG 0.451079 5_4:-47211157 Msa0854590:CDS
AAAGACTACGAACCAATAAT+CGG 0.453986 5_4:-47211262 Msa0854590:CDS
GTTCATATGGAAGAGGATGC+TGG 0.459070 5_4:-47210890 Msa0854590:CDS
CCATTGGGCAGTCAAAGTTT+GGG 0.467411 5_4:-47208985 Msa0854590:CDS
AGGATTACTGATGGAAGGTC+TGG 0.472816 5_4:+47208547 None:intergenic
ACGTAGAAGATATGAAAAGA+TGG 0.477653 5_4:-47208467 Msa0854590:CDS
CTTTCGCAAGAATATGTAGA+TGG 0.478868 5_4:-47208526 Msa0854590:CDS
TGCAGCAGAATTACAGAGGT+TGG 0.481825 5_4:-47209083 Msa0854590:CDS
TCTGAGCCTGACATGAGAAA+TGG 0.487908 5_4:-47209124 Msa0854590:CDS
ATTCCTTTGGAGTATGGTGG+TGG 0.491117 5_4:-47210938 Msa0854590:CDS
TCAAGCAGATCAGATAGTAC+AGG 0.494685 5_4:-47208766 Msa0854590:CDS
CGTAGAAGATATGAAAAGAT+GGG 0.500188 5_4:-47208466 Msa0854590:CDS
AGTACAGGAAACTCGATTCT+GGG 0.507212 5_4:-47208751 Msa0854590:CDS
CATACAAACTGGACAAATGC+TGG 0.507901 5_4:+47211159 None:intergenic
CAGGTTGATCTAAACAGGGC+AGG 0.508766 5_4:-47209169 Msa0854590:CDS
ATTCTGGGAAGAAGGCTCTC+AGG 0.511392 5_4:-47208736 Msa0854590:CDS
TTGTTGTGGAATGGTGAAAA+CGG 0.516640 5_4:+47211365 None:intergenic
AATGTATCAGTAAGACCCAT+TGG 0.519708 5_4:-47209001 Msa0854590:CDS
AGGTATTTGGGAGTGAGCAA+TGG 0.519711 5_4:-47209058 Msa0854590:CDS
GGAAATGAGCCGTAATTGTA+GGG 0.520405 5_4:+47211187 None:intergenic
CCCAAACTTTGACTGCCCAA+TGG 0.522022 5_4:+47208985 None:intergenic
CTATCTGATCTGCTTGACCT+TGG 0.525882 5_4:+47208772 None:intergenic
TGAAAATGGAAATTATTCTC+AGG 0.527515 5_4:-47210852 Msa0854590:intron
GAAACTCGATTCTGGGAAGA+AGG 0.530670 5_4:-47208744 Msa0854590:CDS
AGAAACCCAGAACTCGCAAT+CGG 0.541427 5_4:+47210971 None:intergenic
ATGTATCAGTAAGACCCATT+GGG 0.542581 5_4:-47209000 Msa0854590:CDS
GCAGTCAAAGTTTGGGACAA+AGG 0.544671 5_4:-47208978 Msa0854590:intron
TTCATATGGAAGAGGATGCT+GGG 0.547037 5_4:-47210889 Msa0854590:CDS
TACTAGGGTTCATATGGAAG+AGG 0.547980 5_4:-47210897 Msa0854590:CDS
TTCCTTTGGAGTATGGTGGT+GGG 0.550417 5_4:-47210937 Msa0854590:CDS
AGGTTGATCTAAACAGGGCA+GGG 0.554153 5_4:-47209168 Msa0854590:CDS
TCTTGCGAAAGGATTACTGA+TGG 0.558499 5_4:+47208538 None:intergenic
CATCTACATATTCTTGCGAA+AGG 0.562299 5_4:+47208527 None:intergenic
TTTAAAACAGGTAAAGCGCC+AGG 0.568893 5_4:+47211130 None:intergenic
TAAGAGGTTTGGGATTACTA+GGG 0.574696 5_4:-47210912 Msa0854590:CDS
TGTTTGTGTTTGGGATTGTG+TGG 0.578042 5_4:+47211336 None:intergenic
GATATTCCTTTGGAGTATGG+TGG 0.580260 5_4:-47210941 Msa0854590:CDS
GCGAAAGGATTACTGATGGA+AGG 0.592489 5_4:+47208542 None:intergenic
GCATTTGTCCAGTTTGTATG+GGG 0.593371 5_4:-47211156 Msa0854590:CDS
AGCAATGGAAATATGCAAGA+AGG 0.594104 5_4:-47209043 Msa0854590:CDS
GGTTGATCTAAACAGGGCAG+GGG 0.633434 5_4:-47209167 Msa0854590:CDS
CAGGTGCAACTTCATAGCCA+AGG 0.640916 5_4:-47208789 Msa0854590:CDS
ATTGTAGGGACAGTTACAGA+AGG 0.645394 5_4:+47211201 None:intergenic
TCAGAAACTATCTCTAGCAA+AGG 0.645875 5_4:+47209142 None:intergenic
TTCACAGGTTGATCTAAACA+GGG 0.650833 5_4:-47209173 Msa0854590:intron
TGCCCACCACCATACTCCAA+AGG 0.652919 5_4:+47210935 None:intergenic
AATATGCAGCAGAATTACAG+AGG 0.709133 5_4:-47209087 Msa0854590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTAATAAAAAGTTC+AGG + chr5_4:47209464-47209483 None:intergenic 15.0%
!! TGTTGTTAAATACTTATTAT+TGG + chr5_4:47210267-47210286 None:intergenic 15.0%
!! TAATAAGTATTTAACAACAA+AGG - chr5_4:47210268-47210287 Msa0854590:intron 15.0%
!! AATAAGTATTTAACAACAAA+GGG - chr5_4:47210269-47210288 Msa0854590:intron 15.0%
!!! TTTTGGTATTTGTTTAACTT+TGG - chr5_4:47209070-47209089 Msa0854590:CDS 20.0%
!! TTATATTTAGAGAGAACTAA+GGG - chr5_4:47209904-47209923 Msa0854590:intron 20.0%
!! CTATTCAATCTTAACAAATA+GGG + chr5_4:47209947-47209966 None:intergenic 20.0%
!!! CTATTTGTTAAGATTGAATA+GGG - chr5_4:47209946-47209965 Msa0854590:intron 20.0%
!! TGTCAATACTCAAAAAAATA+TGG + chr5_4:47210081-47210100 None:intergenic 20.0%
!! TGTTAAATACTTATTATTGG+AGG + chr5_4:47210264-47210283 None:intergenic 20.0%
!!! TAGAGATCACAATTTAAAAT+AGG + chr5_4:47210324-47210343 None:intergenic 20.0%
!!! ATTTTAAATTGTGATCTCTA+TGG - chr5_4:47210324-47210343 Msa0854590:intron 20.0%
!! AAATTTAACATACTTCAACA+AGG + chr5_4:47210662-47210681 None:intergenic 20.0%
!! TTGAAGTATGTTAAATTTGA+TGG - chr5_4:47210664-47210683 Msa0854590:intron 20.0%
!! GCAATGTAATATTAACAAAT+AGG - chr5_4:47210957-47210976 Msa0854590:CDS 20.0%
!! GTTATGATTAATTATTGTTC+TGG - chr5_4:47210984-47211003 Msa0854590:CDS 20.0%
!!! CTATTGATTTTGAAATTTCA+AGG - chr5_4:47211053-47211072 Msa0854590:CDS 20.0%
!! ATGTAAGAAAATAAGTATGA+GGG + chr5_4:47211227-47211246 None:intergenic 20.0%
!! AATGTAAGAAAATAAGTATG+AGG + chr5_4:47211228-47211247 None:intergenic 20.0%
!! AACTATAACAATGAGAAAAA+AGG - chr5_4:47211263-47211282 Msa0854590:CDS 20.0%
!!! TTTACCTGTTTTAAACAGTA+AGG - chr5_4:47208743-47208762 Msa0854590:CDS 25.0%
!! ATAACCTTACTGTTTAAAAC+AGG + chr5_4:47208750-47208769 None:intergenic 25.0%
!!! ATTGAGTTTGCTGTTAAATT+AGG - chr5_4:47208768-47208787 Msa0854590:CDS 25.0%
! TGAAAATGGAAATTATTCTC+AGG - chr5_4:47209013-47209032 Msa0854590:CDS 25.0%
!!! GTTTCTTTGTTTCTTTTCAT+TGG - chr5_4:47209040-47209059 Msa0854590:CDS 25.0%
!!! TGTTTCTTTTCATTGGTTTT+TGG - chr5_4:47209047-47209066 Msa0854590:CDS 25.0%
!!! TTTTCATTGGTTTTTGGTTT+TGG - chr5_4:47209053-47209072 Msa0854590:CDS 25.0%
! TAGTAAAAAAAAACACAGTG+TGG - chr5_4:47209475-47209494 Msa0854590:intron 25.0%
! CAAATGTATCAATGAACATA+TGG + chr5_4:47209524-47209543 None:intergenic 25.0%
! TTATTGTTCTCGTTAAATGT+TGG + chr5_4:47209678-47209697 None:intergenic 25.0%
! GAAGTAATGTAAGAATGAAA+AGG - chr5_4:47209743-47209762 Msa0854590:intron 25.0%
!! TAAAATGTGTTTTCTCCTAA+CGG - chr5_4:47209818-47209837 Msa0854590:intron 25.0%
! GTTATATTTAGAGAGAACTA+AGG - chr5_4:47209903-47209922 Msa0854590:intron 25.0%
! TATATTTAGAGAGAACTAAG+GGG - chr5_4:47209905-47209924 Msa0854590:intron 25.0%
! CCTATTCAATCTTAACAAAT+AGG + chr5_4:47209948-47209967 None:intergenic 25.0%
!! CCTATTTGTTAAGATTGAAT+AGG - chr5_4:47209945-47209964 Msa0854590:intron 25.0%
! TACTTATTATTGGAGGAATT+AGG + chr5_4:47210257-47210276 None:intergenic 25.0%
! TATTTATACCATCTATGCTT+AGG - chr5_4:47210458-47210477 Msa0854590:intron 25.0%
! TCCTGAATAATTAATACCAA+AGG - chr5_4:47210612-47210631 Msa0854590:intron 25.0%
! ACCTTTGGTATTAATTATTC+AGG + chr5_4:47210616-47210635 None:intergenic 25.0%
!!! AATTTGATGGTTTTTTTCAC+AGG - chr5_4:47210677-47210696 Msa0854590:intron 25.0%
! ATAACAATGAGAAAAAAGGA+AGG - chr5_4:47211267-47211286 Msa0854590:CDS 25.0%
! TAACAATGAGAAAAAAGGAA+GGG - chr5_4:47211268-47211287 Msa0854590:CDS 25.0%
! TGGTATTCAAAATTCTTTAC+CGG - chr5_4:47211359-47211378 Msa0854590:CDS 25.0%
TTTCGTTTGTGTTTGTGTTT+GGG + chr5_4:47208541-47208560 None:intergenic 30.0%
!!! TTATTGGTTCGTAGTCTTTT+GGG + chr5_4:47208602-47208621 None:intergenic 30.0%
!!! ATTATTGGTTCGTAGTCTTT+TGG + chr5_4:47208603-47208622 None:intergenic 30.0%
AAAGACTACGAACCAATAAT+CGG - chr5_4:47208603-47208622 Msa0854590:CDS 30.0%
TGTGTTTCAATTCCGATTAT+TGG + chr5_4:47208618-47208637 None:intergenic 30.0%
CGTTTGATTCTAAGTTTGAT+AGG - chr5_4:47208814-47208833 Msa0854590:CDS 30.0%
!! TTTTATCCTGATTTGCCTAA+AGG - chr5_4:47208846-47208865 Msa0854590:CDS 30.0%
TCTTGATGTTGATATTCCTT+TGG - chr5_4:47208914-47208933 Msa0854590:intron 30.0%
AAGTTGTTGCATACTGAAAA+TGG - chr5_4:47208999-47209018 Msa0854590:CDS 30.0%
! GTATTTGTTTAACTTTGGTG+TGG - chr5_4:47209075-47209094 Msa0854590:CDS 30.0%
TACGCAACAAGTCAAAAATT+CGG + chr5_4:47209292-47209311 None:intergenic 30.0%
! ACATAATTTGCAATTCGCAT+TGG + chr5_4:47209335-47209354 None:intergenic 30.0%
GAATGAAAAGGTTTCAGTTT+AGG - chr5_4:47209755-47209774 Msa0854590:intron 30.0%
! TTTTGAACTGGAAAGCAAAA+AGG - chr5_4:47209784-47209803 Msa0854590:intron 30.0%
ATCTATCCTGATATCATTCT+TGG + chr5_4:47210357-47210376 None:intergenic 30.0%
AATGAATTGTCCCATGTATT+TGG + chr5_4:47210380-47210399 None:intergenic 30.0%
ATCAAAAACCTAAGCATAGA+TGG + chr5_4:47210469-47210488 None:intergenic 30.0%
GAAGGAATAAAAAGCTTATG+TGG - chr5_4:47210519-47210538 Msa0854590:intron 30.0%
AACAAGGTTATCATACATCA+GGG + chr5_4:47210646-47210665 None:intergenic 30.0%
TGATTAATTATTGTTCTGGC+AGG - chr5_4:47210988-47211007 Msa0854590:CDS 30.0%
!!! TGATTTTGAAATTTCAAGGC+AGG - chr5_4:47211057-47211076 Msa0854590:CDS 30.0%
!!! TTTGTTGTTGTTTTCGTTCT+AGG - chr5_4:47211170-47211189 Msa0854590:CDS 30.0%
! TATCTTCTACGTTTTTCTTC+AGG + chr5_4:47211390-47211409 None:intergenic 30.0%
ACGTAGAAGATATGAAAAGA+TGG - chr5_4:47211398-47211417 Msa0854590:CDS 30.0%
CGTAGAAGATATGAAAAGAT+GGG - chr5_4:47211399-47211418 Msa0854590:CDS 30.0%
AGATATGAAAAGATGGGATT+AGG - chr5_4:47211405-47211424 Msa0854590:CDS 30.0%
AGAGTAGAAAAGGTTGAAGT+TGG + chr5_4:47208452-47208471 None:intergenic 35.0%
! GTTTTGTAGTTTGAGGATTG+AGG + chr5_4:47208481-47208500 None:intergenic 35.0%
!! GAAAACGGTTTTGTAGTTTG+AGG + chr5_4:47208488-47208507 None:intergenic 35.0%
TTGTTGTGGAATGGTGAAAA+CGG + chr5_4:47208503-47208522 None:intergenic 35.0%
GTTTCGTTTGTGTTTGTGTT+TGG + chr5_4:47208542-47208561 None:intergenic 35.0%
TGTAACTGTCCCTACAATTA+CGG - chr5_4:47208669-47208688 Msa0854590:intron 35.0%
AGCATTTGTCCAGTTTGTAT+GGG - chr5_4:47208708-47208727 Msa0854590:intron 35.0%
!! GTTGATATTCCTTTGGAGTA+TGG - chr5_4:47208921-47208940 Msa0854590:intron 35.0%
! ATAAGAGGTTTGGGATTACT+AGG - chr5_4:47208952-47208971 Msa0854590:intron 35.0%
! TAAGAGGTTTGGGATTACTA+GGG - chr5_4:47208953-47208972 Msa0854590:intron 35.0%
!! TTTGGTGTCCTTTAACAATG+TGG - chr5_4:47209148-47209167 Msa0854590:CDS 35.0%
CACTTTCACCACATTGTTAA+AGG + chr5_4:47209159-47209178 None:intergenic 35.0%
GTGAAAGTGACAACGAAAAT+TGG - chr5_4:47209170-47209189 Msa0854590:intron 35.0%
! ACAACGAAAATTGGTTCAGT+TGG - chr5_4:47209179-47209198 Msa0854590:intron 35.0%
!! GTATAAAGTTTTGGTACGCA+TGG + chr5_4:47209258-47209277 None:intergenic 35.0%
! TGACACTCAGATGATCTTTT+TGG - chr5_4:47209354-47209373 Msa0854590:intron 35.0%
!! ACTCAGATGATCTTTTTGGT+TGG - chr5_4:47209358-47209377 Msa0854590:intron 35.0%
CAAAATGACGAGTGCAATAA+CGG - chr5_4:47209623-47209642 Msa0854590:intron 35.0%
!! TTTAGGCATGTGTTTTGAAC+TGG - chr5_4:47209772-47209791 Msa0854590:intron 35.0%
AACTGGAAAGCAAAAAGGTT+TGG - chr5_4:47209789-47209808 Msa0854590:intron 35.0%
ATCACTGCACATGGATATTT+GGG + chr5_4:47209989-47210008 None:intergenic 35.0%
AATCACTGCACATGGATATT+TGG + chr5_4:47209990-47210009 None:intergenic 35.0%
GAAGATCTACTCTTTAGCAA+CGG - chr5_4:47210017-47210036 Msa0854590:intron 35.0%
ATCTTAAAATGCATGCCACA+AGG - chr5_4:47210157-47210176 Msa0854590:intron 35.0%
ATCCTGATATCATTCTTGGT+TGG + chr5_4:47210353-47210372 None:intergenic 35.0%
TCAGGATAGATCCAAATACA+TGG - chr5_4:47210366-47210385 Msa0854590:intron 35.0%
CAGGATAGATCCAAATACAT+GGG - chr5_4:47210367-47210386 Msa0854590:intron 35.0%
GATAAATGAAATAGTACCCC+CGG - chr5_4:47210486-47210505 Msa0854590:intron 35.0%
ATAAATGAAATAGTACCCCC+GGG - chr5_4:47210487-47210506 Msa0854590:intron 35.0%
CAACAAGGTTATCATACATC+AGG + chr5_4:47210647-47210666 None:intergenic 35.0%
!! TTTCACAGGTTGATCTAAAC+AGG - chr5_4:47210691-47210710 Msa0854590:intron 35.0%
!! TTCACAGGTTGATCTAAACA+GGG - chr5_4:47210692-47210711 Msa0854590:intron 35.0%
TCAGAAACTATCTCTAGCAA+AGG + chr5_4:47210726-47210745 None:intergenic 35.0%
TCAATACCATTTCTCATGTC+AGG + chr5_4:47210750-47210769 None:intergenic 35.0%
AATATGCAGCAGAATTACAG+AGG - chr5_4:47210778-47210797 Msa0854590:intron 35.0%
AGCAATGGAAATATGCAAGA+AGG - chr5_4:47210822-47210841 Msa0854590:intron 35.0%
AATGTATCAGTAAGACCCAT+TGG - chr5_4:47210864-47210883 Msa0854590:CDS 35.0%
ATGTATCAGTAAGACCCATT+GGG - chr5_4:47210865-47210884 Msa0854590:CDS 35.0%
ATGACATTAGTCGAGCTTTA+TGG - chr5_4:47210933-47210952 Msa0854590:CDS 35.0%
CATCTACATATTCTTGCGAA+AGG + chr5_4:47211341-47211360 None:intergenic 35.0%
CTTTCGCAAGAATATGTAGA+TGG - chr5_4:47211339-47211358 Msa0854590:CDS 35.0%
GTAGTTTGAGGATTGAGGTT+GGG + chr5_4:47208476-47208495 None:intergenic 40.0%
TGTAGTTTGAGGATTGAGGT+TGG + chr5_4:47208477-47208496 None:intergenic 40.0%
!!! TGGCTTTTGTTGTTGTGGAA+TGG + chr5_4:47208512-47208531 None:intergenic 40.0%
!!! TTGTGTGGCTTTTGTTGTTG+TGG + chr5_4:47208517-47208536 None:intergenic 40.0%
! TGTTTGTGTTTGGGATTGTG+TGG + chr5_4:47208532-47208551 None:intergenic 40.0%
!! CTTTTGTGTTTGTTGAGAGC+TGG + chr5_4:47208644-47208663 None:intergenic 40.0%
ATTGTAGGGACAGTTACAGA+AGG + chr5_4:47208667-47208686 None:intergenic 40.0%
GGAAATGAGCCGTAATTGTA+GGG + chr5_4:47208681-47208700 None:intergenic 40.0%
TGGAAATGAGCCGTAATTGT+AGG + chr5_4:47208682-47208701 None:intergenic 40.0%
CATACAAACTGGACAAATGC+TGG + chr5_4:47208709-47208728 None:intergenic 40.0%
CAGCATTTGTCCAGTTTGTA+TGG - chr5_4:47208707-47208726 Msa0854590:intron 40.0%
GCATTTGTCCAGTTTGTATG+GGG - chr5_4:47208709-47208728 Msa0854590:intron 40.0%
! TTTAAAACAGGTAAAGCGCC+AGG + chr5_4:47208738-47208757 None:intergenic 40.0%
TGATAGCCTTTAGGCAAATC+AGG + chr5_4:47208855-47208874 None:intergenic 40.0%
TGCGAAATCTGATAGCCTTT+AGG + chr5_4:47208864-47208883 None:intergenic 40.0%
!! GATATTCCTTTGGAGTATGG+TGG - chr5_4:47208924-47208943 Msa0854590:intron 40.0%
TGGGATTACTAGGGTTCATA+TGG - chr5_4:47208962-47208981 Msa0854590:intron 40.0%
TACTAGGGTTCATATGGAAG+AGG - chr5_4:47208968-47208987 Msa0854590:intron 40.0%
TTCATATGGAAGAGGATGCT+GGG - chr5_4:47208976-47208995 Msa0854590:intron 40.0%
! AAGTTGACTCATACTCGCAA+GGG - chr5_4:47209206-47209225 Msa0854590:intron 40.0%
! ATTCGCATTGGTACGCAATA+CGG + chr5_4:47209323-47209342 None:intergenic 40.0%
CTTACATTACTTCCTCATCC+CGG + chr5_4:47209736-47209755 None:intergenic 40.0%
TTCTCCTAACGGCAATTTGA+CGG - chr5_4:47209829-47209848 Msa0854590:intron 40.0%
AGTGATGCTTGGACAAAAAG+AGG - chr5_4:47209872-47209891 Msa0854590:intron 40.0%
GTGATGCTTGGACAAAAAGA+GGG - chr5_4:47209873-47209892 Msa0854590:intron 40.0%
TGATGCTTGGACAAAAAGAG+GGG - chr5_4:47209874-47209893 Msa0854590:intron 40.0%
ATTTAGAGAGAACTAAGGGG+AGG - chr5_4:47209908-47209927 Msa0854590:intron 40.0%
CACATAAGAATCACTGCACA+TGG + chr5_4:47209998-47210017 None:intergenic 40.0%
ACTCTTTAGCAACGGTGAAA+AGG - chr5_4:47210025-47210044 Msa0854590:intron 40.0%
! ATGTGCAATTTTCAGCCTTG+TGG + chr5_4:47210175-47210194 None:intergenic 40.0%
TGCTTTGACCACATTACCAT+TGG - chr5_4:47210211-47210230 Msa0854590:intron 40.0%
! CACATTAGCCAATGGTAATG+TGG + chr5_4:47210222-47210241 None:intergenic 40.0%
! CACATTACCATTGGCTAATG+TGG - chr5_4:47210220-47210239 Msa0854590:intron 40.0%
TGATCTTCCACATTAGCCAA+TGG + chr5_4:47210230-47210249 None:intergenic 40.0%
TGGCTAATGTGGAAGATCAT+TGG - chr5_4:47210231-47210250 Msa0854590:intron 40.0%
GTCCAACCAAGAATGATATC+AGG - chr5_4:47210348-47210367 Msa0854590:intron 40.0%
TATTCCTTCTGATTGAAGCC+CGG + chr5_4:47210508-47210527 None:intergenic 40.0%
! CAGAATTACAGAGGTTGGTT+AGG - chr5_4:47210787-47210806 Msa0854590:intron 40.0%
! ACAGAGGTTGGTTAGGTATT+TGG - chr5_4:47210794-47210813 Msa0854590:intron 40.0%
! CAGAGGTTGGTTAGGTATTT+GGG - chr5_4:47210795-47210814 Msa0854590:intron 40.0%
TCAAGCAGATCAGATAGTAC+AGG - chr5_4:47211099-47211118 Msa0854590:CDS 40.0%
TAGTACAGGAAACTCGATTC+TGG - chr5_4:47211113-47211132 Msa0854590:CDS 40.0%
AGTACAGGAAACTCGATTCT+GGG - chr5_4:47211114-47211133 Msa0854590:CDS 40.0%
TCTTGCGAAAGGATTACTGA+TGG + chr5_4:47211330-47211349 None:intergenic 40.0%
GAGGTTGGGTAGAGTAGAAA+AGG + chr5_4:47208462-47208481 None:intergenic 45.0%
!! TTGGTTCGTAGTCTTTTGGG+AGG + chr5_4:47208599-47208618 None:intergenic 45.0%
ACTGGACAAATGCTGGTGTT+TGG + chr5_4:47208702-47208721 None:intergenic 45.0%
ATGTTCCGATTGCGAGTTCT+GGG - chr5_4:47208889-47208908 Msa0854590:intron 45.0%
AGAAACCCAGAACTCGCAAT+CGG + chr5_4:47208897-47208916 None:intergenic 45.0%
!! ATTCCTTTGGAGTATGGTGG+TGG - chr5_4:47208927-47208946 Msa0854590:intron 45.0%
!! TTCCTTTGGAGTATGGTGGT+GGG - chr5_4:47208928-47208947 Msa0854590:intron 45.0%
GTTCATATGGAAGAGGATGC+TGG - chr5_4:47208975-47208994 Msa0854590:intron 45.0%
! GAAGTTGACTCATACTCGCA+AGG - chr5_4:47209205-47209224 Msa0854590:intron 45.0%
!! CGCATGGGGGTATAAAGTTT+TGG + chr5_4:47209267-47209286 None:intergenic 45.0%
TCAAAAATTCGGCACGCATG+GGG + chr5_4:47209281-47209300 None:intergenic 45.0%
GTCAAAAATTCGGCACGCAT+GGG + chr5_4:47209282-47209301 None:intergenic 45.0%
AGTCAAAAATTCGGCACGCA+TGG + chr5_4:47209283-47209302 None:intergenic 45.0%
! TTCGCATTGGTACGCAATAC+GGG + chr5_4:47209322-47209341 None:intergenic 45.0%
! TCAGGTGAGTTGACCTCTAA+GGG + chr5_4:47209446-47209465 None:intergenic 45.0%
! TTCAGGTGAGTTGACCTCTA+AGG + chr5_4:47209447-47209466 None:intergenic 45.0%
ATGACGAGTGACGAAGATGA+TGG - chr5_4:47209710-47209729 Msa0854590:intron 45.0%
ACATCCGTCAAATTGCCGTT+AGG + chr5_4:47209836-47209855 None:intergenic 45.0%
! CGGCAATTTGACGGATGTAA+CGG - chr5_4:47209838-47209857 Msa0854590:intron 45.0%
! TTTGACGGATGTAACGGTAG+TGG - chr5_4:47209844-47209863 Msa0854590:intron 45.0%
TAGTGGAGGTTAGTGATGCT+TGG - chr5_4:47209861-47209880 Msa0854590:intron 45.0%
ACTGCACATGGATATTTGGG+AGG + chr5_4:47209986-47210005 None:intergenic 45.0%
ATTCCTTCTGATTGAAGCCC+GGG + chr5_4:47210507-47210526 None:intergenic 45.0%
! AGGTTGATCTAAACAGGGCA+GGG - chr5_4:47210697-47210716 Msa0854590:intron 45.0%
TCTGAGCCTGACATGAGAAA+TGG - chr5_4:47210741-47210760 Msa0854590:intron 45.0%
TGCAGCAGAATTACAGAGGT+TGG - chr5_4:47210782-47210801 Msa0854590:intron 45.0%
AGGTATTTGGGAGTGAGCAA+TGG - chr5_4:47210807-47210826 Msa0854590:intron 45.0%
CCAAACTTTGACTGCCCAAT+GGG + chr5_4:47210882-47210901 None:intergenic 45.0%
CCATTGGGCAGTCAAAGTTT+GGG - chr5_4:47210880-47210899 Msa0854590:CDS 45.0%
! GCAGTCAAAGTTTGGGACAA+AGG - chr5_4:47210887-47210906 Msa0854590:CDS 45.0%
CTATCTGATCTGCTTGACCT+TGG + chr5_4:47211096-47211115 None:intergenic 45.0%
! GAAACTCGATTCTGGGAAGA+AGG - chr5_4:47211121-47211140 Msa0854590:CDS 45.0%
AGGATTACTGATGGAAGGTC+TGG + chr5_4:47211321-47211340 None:intergenic 45.0%
GCGAAAGGATTACTGATGGA+AGG + chr5_4:47211326-47211345 None:intergenic 45.0%
! CGTTTTTCTTCAGGAAGCTC+CGG + chr5_4:47211381-47211400 None:intergenic 45.0%
!!! TTAATTTAGTTTAAATAATT+TGG - chr5_4:47209130-47209149 Msa0854590:CDS 5.0%
CCAGGTAACCCCATACAAAC+TGG + chr5_4:47208720-47208739 None:intergenic 50.0%
CCAGTTTGTATGGGGTTACC+TGG - chr5_4:47208717-47208736 Msa0854590:intron 50.0%
GATGTTCCGATTGCGAGTTC+TGG - chr5_4:47208888-47208907 Msa0854590:intron 50.0%
!! AGTATGGTGGTGGGCATAAG+AGG - chr5_4:47208937-47208956 Msa0854590:intron 50.0%
!! GTGGTGGGCATAAGAGGTTT+GGG - chr5_4:47208943-47208962 Msa0854590:intron 50.0%
CAAAAATTCGGCACGCATGG+GGG + chr5_4:47209280-47209299 None:intergenic 50.0%
TTAGCACTCACTGAGCCTTG+AGG - chr5_4:47209400-47209419 Msa0854590:intron 50.0%
TGCTTGGACAAAAAGAGGGG+AGG - chr5_4:47209877-47209896 Msa0854590:intron 50.0%
TTCCTTCTGATTGAAGCCCG+GGG + chr5_4:47210506-47210525 None:intergenic 50.0%
CATCAGGGCAGTCAAACCTT+TGG + chr5_4:47210631-47210650 None:intergenic 50.0%
!! CAGGTTGATCTAAACAGGGC+AGG - chr5_4:47210696-47210715 Msa0854590:intron 50.0%
GGTTGATCTAAACAGGGCAG+GGG - chr5_4:47210698-47210717 Msa0854590:intron 50.0%
CCCATTGGGCAGTCAAAGTT+TGG - chr5_4:47210879-47210898 Msa0854590:CDS 50.0%
CCCAAACTTTGACTGCCCAA+TGG + chr5_4:47210883-47210902 None:intergenic 50.0%
CAGGTGCAACTTCATAGCCA+AGG - chr5_4:47211076-47211095 Msa0854590:CDS 50.0%
! ATTCTGGGAAGAAGGCTCTC+AGG - chr5_4:47211129-47211148 Msa0854590:CDS 50.0%
! ACTGATGGAAGGTCTGGTTC+TGG + chr5_4:47211315-47211334 None:intergenic 50.0%
TGCCCACCACCATACTCCAA+AGG + chr5_4:47208933-47208952 None:intergenic 55.0%
!! GGTGGTGGGCATAAGAGGTT+TGG - chr5_4:47208942-47208961 Msa0854590:intron 55.0%
! GCAAGGGTGTGAGTGAGTAC+TGG - chr5_4:47209222-47209241 Msa0854590:intron 55.0%
CTAAGGGCTCACCAGGGTTA+GGG + chr5_4:47209430-47209449 None:intergenic 55.0%
TCTAAGGGCTCACCAGGGTT+AGG + chr5_4:47209431-47209450 None:intergenic 55.0%
TAACCCTGGTGAGCCCTTAG+AGG - chr5_4:47209430-47209449 Msa0854590:intron 55.0%
! TGACCTCTAAGGGCTCACCA+GGG + chr5_4:47209436-47209455 None:intergenic 55.0%
! TTGACCTCTAAGGGCTCACC+AGG + chr5_4:47209437-47209456 None:intergenic 55.0%
!! GTTGGTGTTGCGCTCTTGTC+AGG + chr5_4:47209660-47209679 None:intergenic 55.0%
! CGAGTGACGAAGATGATGGC+CGG - chr5_4:47209714-47209733 Msa0854590:intron 55.0%
! GAGTGACGAAGATGATGGCC+GGG - chr5_4:47209715-47209734 Msa0854590:intron 55.0%
! GACGGATGTAACGGTAGTGG+AGG - chr5_4:47209847-47209866 Msa0854590:intron 55.0%
TCCTTCTGATTGAAGCCCGG+GGG + chr5_4:47210505-47210524 None:intergenic 55.0%
CAGGGTTAGGGCAGACCTCA+AGG + chr5_4:47209418-47209437 None:intergenic 60.0%
CTTGAGGTCTGCCCTAACCC+TGG - chr5_4:47209416-47209435 Msa0854590:intron 60.0%
! CGAAGATGATGGCCGGGATG+AGG - chr5_4:47209721-47209740 Msa0854590:intron 60.0%
ACCCCCGGGCTTCAATCAGA+AGG - chr5_4:47210501-47210520 Msa0854590:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 47208423 47211464 47208423 ID=Msa0854590;Name=Msa0854590
chr5_4 mRNA 47208423 47211464 47208423 ID=Msa0854590-mRNA-1;Parent=Msa0854590;Name=Msa0854590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|393
chr5_4 exon 47210853 47211464 47210853 ID=Msa0854590-mRNA-1:exon:14934;Parent=Msa0854590-mRNA-1
chr5_4 exon 47208979 47209188 47208979 ID=Msa0854590-mRNA-1:exon:14933;Parent=Msa0854590-mRNA-1
chr5_4 exon 47208723 47208877 47208723 ID=Msa0854590-mRNA-1:exon:14932;Parent=Msa0854590-mRNA-1
chr5_4 exon 47208423 47208624 47208423 ID=Msa0854590-mRNA-1:exon:14931;Parent=Msa0854590-mRNA-1
chr5_4 CDS 47210853 47211464 47210853 ID=Msa0854590-mRNA-1:cds;Parent=Msa0854590-mRNA-1
chr5_4 CDS 47208979 47209188 47208979 ID=Msa0854590-mRNA-1:cds;Parent=Msa0854590-mRNA-1
chr5_4 CDS 47208723 47208877 47208723 ID=Msa0854590-mRNA-1:cds;Parent=Msa0854590-mRNA-1
chr5_4 CDS 47208423 47208624 47208423 ID=Msa0854590-mRNA-1:cds;Parent=Msa0854590-mRNA-1
Gene Sequence

>Msa0854590

ATGTCTTTCACAATTTTCAGAACATTCCAACTTCAACCTTTTCTACTCTACCCAACCTCAATCCTCAAACTACAAAACCGTTTTCACCATTCCACAACAACAAAAGCCACACAATCCCAAACACAAACACAAACGAAACATTCAACAAGTACACAATCAAAAAAACTTAACAACCTCCCAAAAGACTACGAACCAATAATCGGAATTGAAACACACGTCCAGCTCTCAACAAACACAAAAGCCTTCTGTAACTGTCCCTACAATTACGGCTCATTTCCAAACACCAGCATTTGTCCAGTTTGTATGGGGTTACCTGGCGCTTTACCTGTTTTAAACAGTAAGGTTATTGAGTTTGCTGTTAAATTAGGACTCGCGCTTAATTGCGAATTAGCGTTTGATTCTAAGTTTGATAGGAAACAGTATTTTTATCCTGATTTGCCTAAAGGCTATCAGATTTCGCAATTTGATGTTCCGATTGCGAGTTCTGGGTTTCTTGATGTTGATATTCCTTTGGAGTATGGTGGTGGGCATAAGAGGTTTGGGATTACTAGGGTTCATATGGAAGAGGATGCTGGGAAGTTGTTGCATACTGAAAATGGAAATTATTCTCAGGTTGATCTAAACAGGGCAGGGGTGCCTTTGCTAGAGATAGTTTCTGAGCCTGACATGAGAAATGGTATTGAAGCAGCAGAATATGCAGCAGAATTACAGAGGTTGGTTAGGTATTTGGGAGTGAGCAATGGAAATATGCAAGAAGGTTCTCTTCGTTGCGATGTAAATGTATCAGTAAGACCCATTGGGCAGTCAAAGTTTGGGACAAAGGTTGAAGTGAAAAATTTGAACTCATTTGCATCAATGAGCAGAGCTATTGATTTTGAAATTTCAAGGCAGGTGCAACTTCATAGCCAAGGTCAAGCAGATCAGATAGTACAGGAAACTCGATTCTGGGAAGAAGGCTCTCAGGCTAGTACTATATTAACTATAACAATGAGAAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCATCAGTAATCCTTTCGCAAGAATATGTAGATGGTATTCAAAATTCTTTACCGGAGCTTCCTGAAGAAAAACGTAGAAGATATGAAAAGATGGGATTAGGCATGCAAGATGTTCTTTTCCTAGCTAATGATAAAAAT

Protein sequence

>Msa0854590

MSFTIFRTFQLQPFLLYPTSILKLQNRFHHSTTTKATQSQTQTQTKHSTSTQSKKLNNLPKDYEPIIGIETHVQLSTNTKAFCNCPYNYGSFPNTSICPVCMGLPGALPVLNSKVIEFAVKLGLALNCELAFDSKFDRKQYFYPDLPKGYQISQFDVPIASSGFLDVDIPLEYGGGHKRFGITRVHMEEDAGKLLHTENGNYSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSVRPIGQSKFGTKVEVKNLNSFASMSRAIDFEISRQVQLHSQGQADQIVQETRFWEEGSQASTILTITMRKKEGLADYRYFPEPDLPSVILSQEYVDGIQNSLPELPEEKRRRYEKMGLGMQDVLFLANDKN