Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849110 | XP_003614502.1 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 1.75e-108 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849110 | sp|Q9SX29|CLPS1_ARATH | 71.069 | 159 | 43 | 2 | 1 | 156 | 1 | 159 | 3.70e-81 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849110 | G7JYE1 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 8.36e-109 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036540 | Msa0849110 | -0.803411 | 3.530566e-49 | -8.615850e-47 |
| Msa0045550 | Msa0849110 | -0.805793 | 1.124448e-49 | -8.615850e-47 |
| Msa0106710 | Msa0849110 | -0.812884 | 3.386842e-51 | -8.615850e-47 |
| Msa0658590 | Msa0849110 | -0.835139 | 1.996340e-56 | -8.615850e-47 |
| Msa0750250 | Msa0849110 | -0.800414 | 1.457204e-48 | -8.615850e-47 |
| Msa0770090 | Msa0849110 | 0.942027 | 1.483711e-101 | -8.615850e-47 |
| Msa0833190 | Msa0849110 | 0.804564 | 2.033582e-49 | -8.615850e-47 |
| Msa0131330 | Msa0849110 | -0.811691 | 6.168693e-51 | -8.615850e-47 |
| Msa0187830 | Msa0849110 | -0.810394 | 1.178260e-50 | -8.615850e-47 |
| Msa0189300 | Msa0849110 | -0.816140 | 6.447889e-52 | -8.615850e-47 |
| Msa0206690 | Msa0849110 | -0.807073 | 6.040865e-50 | -8.615850e-47 |
| Msa0229170 | Msa0849110 | -0.814276 | 1.673423e-51 | -8.615850e-47 |
| Msa0378970 | Msa0849110 | -0.802234 | 6.180544e-49 | -8.615850e-47 |
| Msa0420590 | Msa0849110 | 0.812862 | 3.423618e-51 | -8.615850e-47 |
| Msa0420650 | Msa0849110 | 0.815774 | 7.780573e-52 | -8.615850e-47 |
| Msa0422180 | Msa0849110 | -0.807241 | 5.563778e-50 | -8.615850e-47 |
| Msa0436920 | Msa0849110 | 0.804986 | 1.660144e-49 | -8.615850e-47 |
| Msa0443430 | Msa0849110 | -0.813540 | 2.430849e-51 | -8.615850e-47 |
| Msa0481970 | Msa0849110 | -0.801735 | 7.825595e-49 | -8.615850e-47 |
| Msa0264530 | Msa0849110 | -0.808734 | 2.676992e-50 | -8.615850e-47 |
| Msa0317970 | Msa0849110 | -0.814500 | 1.493019e-51 | -8.615850e-47 |
| Msa0322240 | Msa0849110 | -0.834334 | 3.183723e-56 | -8.615850e-47 |
| Msa0357900 | Msa0849110 | -0.802639 | 5.098752e-49 | -8.615850e-47 |
| Msa0514610 | Msa0849110 | -0.800288 | 1.546279e-48 | -8.615850e-47 |
| Msa0542470 | Msa0849110 | -0.809353 | 1.972850e-50 | -8.615850e-47 |
| Msa0849110 | Msa0879850 | -0.800172 | 1.632541e-48 | -8.615850e-47 |
| Msa0849110 | Msa0944200 | -0.802526 | 5.380709e-49 | -8.615850e-47 |
| Msa0849110 | Msa0970530 | -0.812362 | 4.403990e-51 | -8.615850e-47 |
| Msa0849110 | Msa1125960 | 0.828209 | 1.021038e-54 | -8.615850e-47 |
| Msa0849110 | Msa1143020 | -0.812602 | 3.904345e-51 | -8.615850e-47 |
| Msa0849110 | Msa1226470 | -0.831799 | 1.359940e-55 | -8.615850e-47 |
| Msa0849110 | Msa1296460 | 0.824179 | 9.288512e-54 | -8.615850e-47 |
| Msa0849110 | Msa1329050 | 0.809011 | 2.336186e-50 | -8.615850e-47 |
| Msa0849110 | Msa1342630 | -0.810801 | 9.619162e-51 | -8.615850e-47 |
| Msa0849110 | Msa1348650 | 0.831854 | 1.318453e-55 | -8.615850e-47 |
| Msa0849110 | Msa1393840 | 0.802528 | 5.374279e-49 | -8.615850e-47 |
| Msa0849110 | Msa1410420 | -0.817876 | 2.627383e-52 | -8.615850e-47 |
| Msa0849110 | Msa1416370 | -0.802241 | 6.160828e-49 | -8.615850e-47 |
| Msa0849110 | Msa1454530 | -0.817406 | 3.353193e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849110 | MtrunA17_Chr5g0422751 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 1.61e-112 | 315 |
| Msa0849110 | MtrunA17_Chr6g0484911 | 70.667 | 150 | 37 | 3 | 11 | 156 | 60 | 206 | 3.49e-69 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849110 | AT1G68660.1 | 71.069 | 159 | 43 | 2 | 1 | 156 | 1 | 159 | 3.76e-82 | 239 |
| Msa0849110 | AT1G68660.2 | 55.346 | 159 | 38 | 3 | 1 | 156 | 1 | 129 | 3.30e-55 | 170 |
Find 56 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGTGGCTTTCTCAATAAC+TGG | 0.289306 | 5_4:+35402398 | None:intergenic |
| GAGTGCGATTTGTGGGAGTA+TGG | 0.350184 | 5_4:-35404728 | Msa0849110:CDS |
| TGTATCTTTGTATAATTGAT+TGG | 0.379796 | 5_4:+35404767 | None:intergenic |
| TCAAATCAAATTCAGATTCC+CGG | 0.395114 | 5_4:+35402372 | None:intergenic |
| GATCATTGTATGCAACTTAG+AGG | 0.399829 | 5_4:-35401631 | Msa0849110:CDS |
| AAGGGTGAGATAGAAAATAT+CGG | 0.401255 | 5_4:-35401531 | Msa0849110:three_prime_UTR |
| TATTCATTATTCATAATCAT+AGG | 0.403074 | 5_4:+35401424 | None:intergenic |
| TTGTGCAATATTACACGATA+TGG | 0.414798 | 5_4:+35401802 | None:intergenic |
| GCATTATCAAGGGTCATTCC+AGG | 0.425052 | 5_4:+35401727 | None:intergenic |
| AATGGCTTTAATGCTATTGA+AGG | 0.425213 | 5_4:-35401550 | Msa0849110:three_prime_UTR |
| TCAAATTCAGATTCCCGGCC+TGG | 0.431777 | 5_4:+35402377 | None:intergenic |
| TGATGTTAACTGCATTATCA+AGG | 0.464225 | 5_4:+35401716 | None:intergenic |
| CCCATGGCTGTATTAACAAA+AGG | 0.470418 | 5_4:-35402452 | Msa0849110:CDS |
| CCTGCTATGAAGAGATGGTT+GGG | 0.477514 | 5_4:+35404697 | None:intergenic |
| AGCCATGGGAACACAAAGAT+TGG | 0.479195 | 5_4:+35402466 | None:intergenic |
| CAAATTCAGATTCCCGGCCT+GGG | 0.480296 | 5_4:+35402378 | None:intergenic |
| GCTGTATTAACAAAAGGATC+TGG | 0.483670 | 5_4:-35402446 | Msa0849110:CDS |
| TTCCAATCTTTGTGTTCCCA+TGG | 0.489326 | 5_4:-35402468 | Msa0849110:CDS |
| TGAGAAAGCCACCCCAGGCC+GGG | 0.496954 | 5_4:-35402390 | Msa0849110:CDS |
| TGGTAAAGGAGGAGGAATCC+TGG | 0.496970 | 5_4:-35402426 | Msa0849110:CDS |
| TGTATGCAACTTAGAGGCAA+TGG | 0.502603 | 5_4:-35401625 | Msa0849110:CDS |
| CTCAGTTCAATTGAACCTGC+AGG | 0.507343 | 5_4:-35401598 | Msa0849110:CDS |
| AATGATCTTCAGCATCAGCT+TGG | 0.508043 | 5_4:+35401647 | None:intergenic |
| ATGATCTTCAGCATCAGCTT+GGG | 0.510156 | 5_4:+35401648 | None:intergenic |
| TTCAGATTCCCGGCCTGGGG+TGG | 0.510475 | 5_4:+35402382 | None:intergenic |
| CCCAACCATCTCTTCATAGC+AGG | 0.515429 | 5_4:-35404697 | Msa0849110:intron |
| TAGCATTAAAGCCATTGAAA+AGG | 0.518320 | 5_4:+35401557 | None:intergenic |
| TGAAGAGATGGTTGGGAGAG+AGG | 0.527218 | 5_4:+35404704 | None:intergenic |
| AGGGTGAGATAGAAAATATC+GGG | 0.530613 | 5_4:-35401530 | Msa0849110:three_prime_UTR |
| ACCTGCTATGAAGAGATGGT+TGG | 0.533059 | 5_4:+35404696 | None:intergenic |
| AGATGAAGAGTGCGATTTGT+GGG | 0.533174 | 5_4:-35404735 | Msa0849110:CDS |
| TTGAGAAAGCCACCCCAGGC+CGG | 0.534808 | 5_4:-35402391 | Msa0849110:CDS |
| AGTGCGATTTGTGGGAGTAT+GGG | 0.535715 | 5_4:-35404727 | Msa0849110:CDS |
| GGATCACCTTCATAAGTACT+TGG | 0.538715 | 5_4:+35401749 | None:intergenic |
| TTAACAAAAGGATCTGGTAA+AGG | 0.546310 | 5_4:-35402440 | Msa0849110:CDS |
| AGAGACCTGCTATGAAGAGA+TGG | 0.546313 | 5_4:+35404692 | None:intergenic |
| AAAGGATCTGGTAAAGGAGG+AGG | 0.553268 | 5_4:-35402434 | Msa0849110:CDS |
| CTAAGATGTGCAGGAAATCA+CGG | 0.554342 | 5_4:-35401837 | Msa0849110:intron |
| CATCAGCAACCATCACCTGC+AGG | 0.555211 | 5_4:+35401583 | None:intergenic |
| TGTTGTCCAAGTACTTATGA+AGG | 0.564357 | 5_4:-35401755 | Msa0849110:CDS |
| GAGATGAAGAGTGCGATTTG+TGG | 0.564782 | 5_4:-35404736 | Msa0849110:CDS |
| GTACTTATGAAGGTGATCCC+TGG | 0.569299 | 5_4:-35401745 | Msa0849110:CDS |
| ATGGCTTTAATGCTATTGAA+GGG | 0.572328 | 5_4:-35401549 | Msa0849110:three_prime_UTR |
| GTTATTGAGAAAGCCACCCC+AGG | 0.591201 | 5_4:-35402395 | Msa0849110:CDS |
| ACAAAAGGATCTGGTAAAGG+AGG | 0.594291 | 5_4:-35402437 | Msa0849110:CDS |
| TCAATTGAACCTGCAGGTGA+TGG | 0.594938 | 5_4:-35401592 | Msa0849110:CDS |
| CATTATCAAGGGTCATTCCA+GGG | 0.602128 | 5_4:+35401728 | None:intergenic |
| GATGTTAACTGCATTATCAA+GGG | 0.610327 | 5_4:+35401717 | None:intergenic |
| CAATGACAACTTCAACAGAC+GGG | 0.612734 | 5_4:-35401782 | Msa0849110:CDS |
| TGCAATATTACACGATATGG+CGG | 0.626220 | 5_4:+35401805 | None:intergenic |
| GAACACAAAGATTGGAACAT+GGG | 0.628706 | 5_4:+35402474 | None:intergenic |
| ACAATGACAACTTCAACAGA+CGG | 0.629056 | 5_4:-35401783 | Msa0849110:CDS |
| ATGCAAGAAGCTCACCACAA+TGG | 0.636426 | 5_4:-35401694 | Msa0849110:CDS |
| GGAACACAAAGATTGGAACA+TGG | 0.638983 | 5_4:+35402473 | None:intergenic |
| AAATTCAGATTCCCGGCCTG+GGG | 0.643776 | 5_4:+35402379 | None:intergenic |
| TCACTACTGACATTCCATTG+TGG | 0.702767 | 5_4:+35401680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTAATTAATTTTACATT+TGG | - | chr5_4:35401594-35401613 | Msa0849110:CDS | 10.0% |
| !! | TGATTAAATTTAAACCTTTA+GGG | - | chr5_4:35401623-35401642 | Msa0849110:CDS | 15.0% |
| !! | ATTTGTAATTGTATACATTT+AGG | - | chr5_4:35401927-35401946 | Msa0849110:intron | 15.0% |
| !!! | TCATAAATAAATAGTCATTT+TGG | + | chr5_4:35401992-35402011 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAATTAGTTGTAT+CGG | + | chr5_4:35402063-35402082 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTTATCACGT+AGG | - | chr5_4:35402448-35402467 | Msa0849110:CDS | 15.0% |
| !!! | TTATTTATTTTTATCACGTA+GGG | - | chr5_4:35402449-35402468 | Msa0849110:CDS | 15.0% |
| !! | TTATAAAAGAAAAGATAAGA+AGG | + | chr5_4:35402954-35402973 | None:intergenic | 15.0% |
| !!! | ATTATATCAAGCTTTTATAT+AGG | - | chr5_4:35403148-35403167 | Msa0849110:intron | 15.0% |
| !! | AACATTTATCAAAATTTGAA+AGG | - | chr5_4:35403359-35403378 | Msa0849110:intron | 15.0% |
| !!! | AAATTTATGATGATTTTCAA+TGG | - | chr5_4:35403994-35404013 | Msa0849110:intron | 15.0% |
| !!! | AATTTATGATGATTTTCAAT+GGG | - | chr5_4:35403995-35404014 | Msa0849110:intron | 15.0% |
| !!! | TTTTTCTTTGTTTTTTTAAG+GGG | + | chr5_4:35404689-35404708 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTGTTTTTTTAA+GGG | + | chr5_4:35404690-35404709 | None:intergenic | 15.0% |
| !!! | TGTTTTTCTTTGTTTTTTTA+AGG | + | chr5_4:35404691-35404710 | None:intergenic | 15.0% |
| !! | TATTCATTATTCATAATCAT+AGG | + | chr5_4:35404760-35404779 | None:intergenic | 15.0% |
| !!! | TATAATAAAACTTTTATAGC+TGG | - | chr5_4:35404783-35404802 | Msa0849110:five_prime_UTR | 15.0% |
| !! | TGTATCTTTGTATAATTGAT+TGG | + | chr5_4:35401417-35401436 | None:intergenic | 20.0% |
| !!! | TTAATTTTACATGTGCTTTA+TGG | - | chr5_4:35401551-35401570 | Msa0849110:three_prime_UTR | 20.0% |
| !! | GTGATTAAATTTAAACCTTT+AGG | - | chr5_4:35401622-35401641 | Msa0849110:CDS | 20.0% |
| !!! | TTGTGCTATTTTATCATATA+TGG | - | chr5_4:35401732-35401751 | Msa0849110:CDS | 20.0% |
| !!! | CTCTTTAGTTTTTAATAGAA+GGG | + | chr5_4:35401893-35401912 | None:intergenic | 20.0% |
| !!! | TCTCTTTAGTTTTTAATAGA+AGG | + | chr5_4:35401894-35401913 | None:intergenic | 20.0% |
| !! | TTAAAAACTAAAGAGACATT+TGG | - | chr5_4:35401898-35401917 | Msa0849110:intron | 20.0% |
| !! | TAAAAACTAAAGAGACATTT+GGG | - | chr5_4:35401899-35401918 | Msa0849110:intron | 20.0% |
| !! | CTAAAACATCAATTTACAAT+GGG | + | chr5_4:35402191-35402210 | None:intergenic | 20.0% |
| !!! | TTTAAGAATTCTTTGGTTTA+CGG | - | chr5_4:35402232-35402251 | Msa0849110:intron | 20.0% |
| !! | AAAAATCTTGATCAAAATCA+TGG | - | chr5_4:35403060-35403079 | Msa0849110:intron | 20.0% |
| !! | CAAAATAAAAAAAACTCACT+TGG | - | chr5_4:35403207-35403226 | Msa0849110:intron | 20.0% |
| !! | CTTACTATGAATGTTATATT+GGG | - | chr5_4:35403517-35403536 | Msa0849110:intron | 20.0% |
| !!! | TGTGATTGAAATTTGTTTTT+TGG | - | chr5_4:35403579-35403598 | Msa0849110:intron | 20.0% |
| !!! | TTGTTTTTCTTAATGTGATT+AGG | - | chr5_4:35403893-35403912 | Msa0849110:intron | 20.0% |
| !! | TTATTAGTGATGATAACTTA+AGG | - | chr5_4:35404024-35404043 | Msa0849110:intron | 20.0% |
| !! | AGTCATTTAGAAAATATGAT+AGG | - | chr5_4:35404165-35404184 | Msa0849110:intron | 20.0% |
| !!! | AAAAAGAAAGTATTTGATTC+TGG | - | chr5_4:35404316-35404335 | Msa0849110:intron | 20.0% |
| ! | TGCTTTATGGTTTATTATGT+GGG | - | chr5_4:35401564-35401583 | Msa0849110:three_prime_UTR | 25.0% |
| ! | AATTAATTACACTTCCCTAA+AGG | + | chr5_4:35401640-35401659 | None:intergenic | 25.0% |
| ! | GACTAAAAAAAACACATTTG+AGG | + | chr5_4:35401871-35401890 | None:intergenic | 25.0% |
| ! | AAAAACTAAAGAGACATTTG+GGG | - | chr5_4:35401900-35401919 | Msa0849110:intron | 25.0% |
| ! | GACTATTTATTTATGAAGCA+CGG | - | chr5_4:35401996-35402015 | Msa0849110:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr5_4:35402093-35402112 | Msa0849110:intron | 25.0% |
| ! | GCTAAAACATCAATTTACAA+TGG | + | chr5_4:35402192-35402211 | None:intergenic | 25.0% |
| ! | TAGTGAGTTTAAGAATTCTT+TGG | - | chr5_4:35402225-35402244 | Msa0849110:intron | 25.0% |
| ! | ATGGGAACACTAATAAAAAT+TGG | - | chr5_4:35402517-35402536 | Msa0849110:intron | 25.0% |
| !!! | CTCTTTATTTTCTCTTGTTA+CGG | + | chr5_4:35402573-35402592 | None:intergenic | 25.0% |
| ! | AGGTATGAATTGAATGAAAT+AGG | - | chr5_4:35402600-35402619 | Msa0849110:intron | 25.0% |
| ! | GGTATGAATTGAATGAAATA+GGG | - | chr5_4:35402601-35402620 | Msa0849110:intron | 25.0% |
| ! | TTATAAACTCTCCATATCTT+TGG | - | chr5_4:35402968-35402987 | Msa0849110:intron | 25.0% |
| !!! | AATAATAAGAAGGGTACTAT+AGG | + | chr5_4:35402998-35403017 | None:intergenic | 25.0% |
| ! | AATAGAGAACATTACAAAAC+TGG | - | chr5_4:35403083-35403102 | Msa0849110:intron | 25.0% |
| ! | TTTGATAAATGTTGTGAGAA+AGG | + | chr5_4:35403352-35403371 | None:intergenic | 25.0% |
| ! | TCAAAATTTGAAAGGATAGT+TGG | - | chr5_4:35403367-35403386 | Msa0849110:intron | 25.0% |
| ! | TCATACACAAATGAAAATGA+AGG | + | chr5_4:35403436-35403455 | None:intergenic | 25.0% |
| ! | TCTTAACTGTCTTAATTACT+TGG | - | chr5_4:35403474-35403493 | Msa0849110:intron | 25.0% |
| ! | ATTCATAGTAAGCATTAACA+GGG | + | chr5_4:35403509-35403528 | None:intergenic | 25.0% |
| ! | GCTTACTATGAATGTTATAT+TGG | - | chr5_4:35403516-35403535 | Msa0849110:intron | 25.0% |
| !! | GACAGATATTCTTTTTGTAA+AGG | - | chr5_4:35403684-35403703 | Msa0849110:intron | 25.0% |
| ! | AAGTTATCATCACTAATAAC+TGG | + | chr5_4:35404023-35404042 | None:intergenic | 25.0% |
| !!! | CATCAAGTATTACTTGTTTT+AGG | + | chr5_4:35404077-35404096 | None:intergenic | 25.0% |
| !! | ACAAGTAATACTTGATGTTT+TGG | - | chr5_4:35404080-35404099 | Msa0849110:intron | 25.0% |
| GTGCTTTATGGTTTATTATG+TGG | - | chr5_4:35401563-35401582 | Msa0849110:three_prime_UTR | 30.0% | |
| AAAATAGCACAACACTAATC+TGG | + | chr5_4:35401724-35401743 | None:intergenic | 30.0% | |
| TTGCACTTTCGATATATTCA+AGG | + | chr5_4:35401810-35401829 | None:intergenic | 30.0% | |
| TTATTTATGAAGCACGGATA+TGG | - | chr5_4:35402002-35402021 | Msa0849110:intron | 30.0% | |
| CTTCACTAAATAATTGACCA+TGG | + | chr5_4:35402340-35402359 | None:intergenic | 30.0% | |
| TTGAGTATGTTGAGAATTTG+CGG | - | chr5_4:35402362-35402381 | Msa0849110:intron | 30.0% | |
| ! | TTTTATTAGTGTTCCCATCA+GGG | + | chr5_4:35402515-35402534 | None:intergenic | 30.0% |
| ! | TTTTTATTAGTGTTCCCATC+AGG | + | chr5_4:35402516-35402535 | None:intergenic | 30.0% |
| ! | TTATTTTCTCTTGTTACGGT+TGG | + | chr5_4:35402569-35402588 | None:intergenic | 30.0% |
| ! | CAAATTGAGTTTTCTGTTCA+GGG | + | chr5_4:35402733-35402752 | None:intergenic | 30.0% |
| ! | ACAAATTGAGTTTTCTGTTC+AGG | + | chr5_4:35402734-35402753 | None:intergenic | 30.0% |
| ! | AGGAGTAATAGTCTTTTAGA+GGG | + | chr5_4:35402760-35402779 | None:intergenic | 30.0% |
| ! | TAGGAGTAATAGTCTTTTAG+AGG | + | chr5_4:35402761-35402780 | None:intergenic | 30.0% |
| CTCTTTAGTAGTATTTACGT+AGG | + | chr5_4:35402780-35402799 | None:intergenic | 30.0% | |
| AAGAGATAAACCTACTTCTA+AGG | - | chr5_4:35402795-35402814 | Msa0849110:intron | 30.0% | |
| AGAGATAAACCTACTTCTAA+GGG | - | chr5_4:35402796-35402815 | Msa0849110:intron | 30.0% | |
| CTATAGGAATACCAAAGATA+TGG | + | chr5_4:35402982-35403001 | None:intergenic | 30.0% | |
| GTGAACGCTAATAATAAGAA+GGG | + | chr5_4:35403007-35403026 | None:intergenic | 30.0% | |
| TGTGAACGCTAATAATAAGA+AGG | + | chr5_4:35403008-35403027 | None:intergenic | 30.0% | |
| CATATGTCAAATTGTTCACA+AGG | - | chr5_4:35403306-35403325 | Msa0849110:intron | 30.0% | |
| CATTCATAGTAAGCATTAAC+AGG | + | chr5_4:35403510-35403529 | None:intergenic | 30.0% | |
| TTCTTGAACATTTGCATTAC+AGG | - | chr5_4:35403660-35403679 | Msa0849110:intron | 30.0% | |
| TCTTGAACATTTGCATTACA+GGG | - | chr5_4:35403661-35403680 | Msa0849110:intron | 30.0% | |
| TTAACAAAAGGATCTGGTAA+AGG | - | chr5_4:35403741-35403760 | Msa0849110:intron | 30.0% | |
| TCAAATCAAATTCAGATTCC+CGG | + | chr5_4:35403812-35403831 | None:intergenic | 30.0% | |
| CAAGTATCTTCAAATGTCAA+TGG | + | chr5_4:35403959-35403978 | None:intergenic | 30.0% | |
| !! | AGATACTTGTTATTGTGCAA+TGG | - | chr5_4:35403970-35403989 | Msa0849110:intron | 30.0% |
| !! | GATACTTGTTATTGTGCAAT+GGG | - | chr5_4:35403971-35403990 | Msa0849110:intron | 30.0% |
| !! | TATGATAGGATTTTTAAGCG+TGG | - | chr5_4:35404179-35404198 | Msa0849110:intron | 30.0% |
| CTTAACGATGAAATTGAAGT+TGG | - | chr5_4:35404204-35404223 | Msa0849110:intron | 30.0% | |
| TTGTGCAATATTACACGATA+TGG | + | chr5_4:35404382-35404401 | None:intergenic | 30.0% | |
| GATGTTAACTGCATTATCAA+GGG | + | chr5_4:35404467-35404486 | None:intergenic | 30.0% | |
| TGATGTTAACTGCATTATCA+AGG | + | chr5_4:35404468-35404487 | None:intergenic | 30.0% | |
| TAGCATTAAAGCCATTGAAA+AGG | + | chr5_4:35404627-35404646 | None:intergenic | 30.0% | |
| !! | AATGGCTTTAATGCTATTGA+AGG | - | chr5_4:35404631-35404650 | Msa0849110:intron | 30.0% |
| !! | ATGGCTTTAATGCTATTGAA+GGG | - | chr5_4:35404632-35404651 | Msa0849110:intron | 30.0% |
| AAGGGTGAGATAGAAAATAT+CGG | - | chr5_4:35404650-35404669 | Msa0849110:intron | 30.0% | |
| GCTAAAACTACATGTGTAAC+TGG | + | chr5_4:35401697-35401716 | None:intergenic | 35.0% | |
| ! | GTAATTATATGTGTCGGTGT+CGG | - | chr5_4:35402099-35402118 | Msa0849110:intron | 35.0% |
| ! | GAATTCTTTGGTTTACGGTT+AGG | - | chr5_4:35402237-35402256 | Msa0849110:intron | 35.0% |
| ! | GCGGCAAATGAAATTTTATC+TGG | - | chr5_4:35402381-35402400 | Msa0849110:CDS | 35.0% |
| TGCTAACAAGAAGTTGAAGT+TGG | - | chr5_4:35402407-35402426 | Msa0849110:CDS | 35.0% | |
| ATCTTTATGACTTACCCTGA+TGG | - | chr5_4:35402498-35402517 | Msa0849110:CDS | 35.0% | |
| TCTTTATGACTTACCCTGAT+GGG | - | chr5_4:35402499-35402518 | Msa0849110:CDS | 35.0% | |
| TGGTTATCGTTCAGATCTAT+TGG | + | chr5_4:35402549-35402568 | None:intergenic | 35.0% | |
| AGAAAATAAAGAGCGAGAAC+AGG | - | chr5_4:35402580-35402599 | Msa0849110:intron | 35.0% | |
| AGAGTTTATCCCTTAGAAGT+AGG | + | chr5_4:35402808-35402827 | None:intergenic | 35.0% | |
| AGACACCCTATAGTTTACTA+AGG | - | chr5_4:35402901-35402920 | Msa0849110:intron | 35.0% | |
| AGGAGCCTTAGTAAACTATA+GGG | + | chr5_4:35402909-35402928 | None:intergenic | 35.0% | |
| AGAAAAGATAAGAAGGCTAG+TGG | + | chr5_4:35402947-35402966 | None:intergenic | 35.0% | |
| CATATGCATAAGATGAGAGA+AGG | + | chr5_4:35403616-35403635 | None:intergenic | 35.0% | |
| CTTCTCTCATCTTATGCATA+TGG | - | chr5_4:35403614-35403633 | Msa0849110:intron | 35.0% | |
| CTTGAACATTTGCATTACAG+GGG | - | chr5_4:35403662-35403681 | Msa0849110:intron | 35.0% | |
| GAACACAAAGATTGGAACAT+GGG | + | chr5_4:35403710-35403729 | None:intergenic | 35.0% | |
| ! | CCTTTTGTTAATACAGCCAT+GGG | + | chr5_4:35403732-35403751 | None:intergenic | 35.0% |
| ! | TCCTTTTGTTAATACAGCCA+TGG | + | chr5_4:35403733-35403752 | None:intergenic | 35.0% |
| GCTGTATTAACAAAAGGATC+TGG | - | chr5_4:35403735-35403754 | Msa0849110:intron | 35.0% | |
| ATGTCATCGCATGTAGTAAA+AGG | - | chr5_4:35404048-35404067 | Msa0849110:intron | 35.0% | |
| TGCAATATTACACGATATGG+CGG | + | chr5_4:35404379-35404398 | None:intergenic | 35.0% | |
| ACAATGACAACTTCAACAGA+CGG | - | chr5_4:35404398-35404417 | Msa0849110:intron | 35.0% | |
| TGTTGTCCAAGTACTTATGA+AGG | - | chr5_4:35404426-35404445 | Msa0849110:intron | 35.0% | |
| GATCATTGTATGCAACTTAG+AGG | - | chr5_4:35404550-35404569 | Msa0849110:intron | 35.0% | |
| AGGGTGAGATAGAAAATATC+GGG | - | chr5_4:35404651-35404670 | Msa0849110:intron | 35.0% | |
| ! | AGATGAAGAGTGCGATTTGT+GGG | - | chr5_4:35401446-35401465 | Msa0849110:three_prime_UTR | 40.0% |
| ! | TTTTAGTCCCTGAATGTGTG+AGG | - | chr5_4:35401768-35401787 | Msa0849110:CDS | 40.0% |
| !!! | GTGTCTTGGGTTAGTCATTT+TGG | - | chr5_4:35401844-35401863 | Msa0849110:intron | 40.0% |
| ! | AATTAGTTGTATCGGCGTGT+CGG | + | chr5_4:35402055-35402074 | None:intergenic | 40.0% |
| GGGTAAATAGCTATGAAGCA+CGG | + | chr5_4:35402171-35402190 | None:intergenic | 40.0% | |
| ! | CACACTCACAATTTTTGCCA+TGG | - | chr5_4:35402320-35402339 | Msa0849110:intron | 40.0% |
| AAGATTAATCGCAACCACTC+AGG | + | chr5_4:35402483-35402502 | None:intergenic | 40.0% | |
| GAGGAGCCTTAGTAAACTAT+AGG | + | chr5_4:35402910-35402929 | None:intergenic | 40.0% | |
| GTTCACATCATACCCCAATA+GGG | - | chr5_4:35403021-35403040 | Msa0849110:intron | 40.0% | |
| TTCTTCTCCTATCCCTATTG+GGG | + | chr5_4:35403036-35403055 | None:intergenic | 40.0% | |
| CTTCTTCTCCTATCCCTATT+GGG | + | chr5_4:35403037-35403056 | None:intergenic | 40.0% | |
| AAACACGTGAAGTGTACACA+AGG | + | chr5_4:35403407-35403426 | None:intergenic | 40.0% | |
| TAAGATGAGAGAAGGTCTTG+TGG | + | chr5_4:35403608-35403627 | None:intergenic | 40.0% | |
| GGAACACAAAGATTGGAACA+TGG | + | chr5_4:35403711-35403730 | None:intergenic | 40.0% | |
| TTCCAATCTTTGTGTTCCCA+TGG | - | chr5_4:35403713-35403732 | Msa0849110:intron | 40.0% | |
| CCCATGGCTGTATTAACAAA+AGG | - | chr5_4:35403729-35403748 | Msa0849110:intron | 40.0% | |
| ACAAAAGGATCTGGTAAAGG+AGG | - | chr5_4:35403744-35403763 | Msa0849110:intron | 40.0% | |
| !!! | TCTCAATAACTGGCTTTTCC+AGG | + | chr5_4:35403776-35403795 | None:intergenic | 40.0% |
| CGACAACTAAATCACTACAG+TGG | + | chr5_4:35404234-35404253 | None:intergenic | 40.0% | |
| ! | TGTTGTTCTGTTGTGCTGAT+TGG | - | chr5_4:35404254-35404273 | Msa0849110:intron | 40.0% |
| CTAAGATGTGCAGGAAATCA+CGG | - | chr5_4:35404344-35404363 | Msa0849110:intron | 40.0% | |
| CAATGACAACTTCAACAGAC+GGG | - | chr5_4:35404399-35404418 | Msa0849110:intron | 40.0% | |
| GGATCACCTTCATAAGTACT+TGG | + | chr5_4:35404435-35404454 | None:intergenic | 40.0% | |
| CATTATCAAGGGTCATTCCA+GGG | + | chr5_4:35404456-35404475 | None:intergenic | 40.0% | |
| TCACTACTGACATTCCATTG+TGG | + | chr5_4:35404504-35404523 | None:intergenic | 40.0% | |
| ATGATCTTCAGCATCAGCTT+GGG | + | chr5_4:35404536-35404555 | None:intergenic | 40.0% | |
| AATGATCTTCAGCATCAGCT+TGG | + | chr5_4:35404537-35404556 | None:intergenic | 40.0% | |
| TGTATGCAACTTAGAGGCAA+TGG | - | chr5_4:35404556-35404575 | Msa0849110:intron | 40.0% | |
| ! | TGCTGATGACACCTTTTCAA+TGG | - | chr5_4:35404613-35404632 | Msa0849110:intron | 40.0% |
| ! | GAGATGAAGAGTGCGATTTG+TGG | - | chr5_4:35401445-35401464 | Msa0849110:three_prime_UTR | 45.0% |
| ! | AGTGCGATTTGTGGGAGTAT+GGG | - | chr5_4:35401454-35401473 | Msa0849110:three_prime_UTR | 45.0% |
| CCTGCTATGAAGAGATGGTT+GGG | + | chr5_4:35401487-35401506 | None:intergenic | 45.0% | |
| ACCTGCTATGAAGAGATGGT+TGG | + | chr5_4:35401488-35401507 | None:intergenic | 45.0% | |
| AGAGACCTGCTATGAAGAGA+TGG | + | chr5_4:35401492-35401511 | None:intergenic | 45.0% | |
| GACAACACCTCACACATTCA+GGG | + | chr5_4:35401778-35401797 | None:intergenic | 45.0% | |
| TGACAACACCTCACACATTC+AGG | + | chr5_4:35401779-35401798 | None:intergenic | 45.0% | |
| CAAATCCTCGAGTGTGTCTT+GGG | - | chr5_4:35401831-35401850 | Msa0849110:intron | 45.0% | |
| GTCTGCGTCTTGCATATTCA+AGG | - | chr5_4:35401965-35401984 | Msa0849110:intron | 45.0% | |
| GTTTACGGTTAGGTTTCGCT+CGG | - | chr5_4:35402247-35402266 | Msa0849110:intron | 45.0% | |
| GATTCCTCTCTGAGTTGTGT+CGG | + | chr5_4:35402701-35402720 | None:intergenic | 45.0% | |
| AGTGGCTGAAGTTACTAGTG+AGG | + | chr5_4:35402929-35402948 | None:intergenic | 45.0% | |
| CGTTCACATCATACCCCAAT+AGG | - | chr5_4:35403020-35403039 | Msa0849110:intron | 45.0% | |
| CATCATACCCCAATAGGGAT+AGG | - | chr5_4:35403026-35403045 | Msa0849110:intron | 45.0% | |
| GCTTCTTCTCCTATCCCTAT+TGG | + | chr5_4:35403038-35403057 | None:intergenic | 45.0% | |
| CACTTGGATGACAAGTGCAT+TGG | - | chr5_4:35403223-35403242 | Msa0849110:intron | 45.0% | |
| ATCTGCTGATGTTGAGCTTG+TGG | - | chr5_4:35403274-35403293 | Msa0849110:intron | 45.0% | |
| ! | TGTTGAGCTTGTGGCTCTAT+TGG | - | chr5_4:35403283-35403302 | Msa0849110:intron | 45.0% |
| TTGTTCACAAGGCTACGTCT+AGG | - | chr5_4:35403317-35403336 | Msa0849110:intron | 45.0% | |
| AGCCATGGGAACACAAAGAT+TGG | + | chr5_4:35403718-35403737 | None:intergenic | 45.0% | |
| AAAGGATCTGGTAAAGGAGG+AGG | - | chr5_4:35403747-35403766 | Msa0849110:intron | 45.0% | |
| !! | CTGGCATTTCTAAGATGTGC+AGG | - | chr5_4:35404335-35404354 | Msa0849110:intron | 45.0% |
| GTACTTATGAAGGTGATCCC+TGG | - | chr5_4:35404436-35404455 | Msa0849110:intron | 45.0% | |
| GCATTATCAAGGGTCATTCC+AGG | + | chr5_4:35404457-35404476 | None:intergenic | 45.0% | |
| ATGCAAGAAGCTCACCACAA+TGG | - | chr5_4:35404487-35404506 | Msa0849110:intron | 45.0% | |
| CTCAGTTCAATTGAACCTGC+AGG | - | chr5_4:35404583-35404602 | Msa0849110:intron | 45.0% | |
| TCAATTGAACCTGCAGGTGA+TGG | - | chr5_4:35404589-35404608 | Msa0849110:intron | 45.0% | |
| GAGTGCGATTTGTGGGAGTA+TGG | - | chr5_4:35401453-35401472 | Msa0849110:three_prime_UTR | 50.0% | |
| TGAAGAGATGGTTGGGAGAG+AGG | + | chr5_4:35401480-35401499 | None:intergenic | 50.0% | |
| CCCAACCATCTCTTCATAGC+AGG | - | chr5_4:35401484-35401503 | Msa0849110:three_prime_UTR | 50.0% | |
| GCAAATCCTCGAGTGTGTCT+TGG | - | chr5_4:35401830-35401849 | Msa0849110:intron | 50.0% | |
| ACTAACCCAAGACACACTCG+AGG | + | chr5_4:35401839-35401858 | None:intergenic | 50.0% | |
| AGACGCAGACGCTGTCATTA+TGG | + | chr5_4:35401955-35401974 | None:intergenic | 50.0% | |
| ACGGATATGGACACTGACAC+CGG | - | chr5_4:35402015-35402034 | Msa0849110:intron | 50.0% | |
| TGTGTGCGCGCGCAATTTAT+GGG | + | chr5_4:35402304-35402323 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr5_4:35402687-35402706 | None:intergenic | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | - | chr5_4:35402707-35402726 | Msa0849110:intron | 50.0% | |
| TTTCTGTTCAGGGCCAGAGT+AGG | + | chr5_4:35402723-35402742 | None:intergenic | 50.0% | |
| TGGTAAAGGAGGAGGAATCC+TGG | - | chr5_4:35403755-35403774 | Msa0849110:intron | 50.0% | |
| GGGGTGGCTTTCTCAATAAC+TGG | + | chr5_4:35403786-35403805 | None:intergenic | 50.0% | |
| GTTATTGAGAAAGCCACCCC+AGG | - | chr5_4:35403786-35403805 | Msa0849110:intron | 50.0% | |
| AAATTCAGATTCCCGGCCTG+GGG | + | chr5_4:35403805-35403824 | None:intergenic | 50.0% | |
| CAAATTCAGATTCCCGGCCT+GGG | + | chr5_4:35403806-35403825 | None:intergenic | 50.0% | |
| TCAAATTCAGATTCCCGGCC+TGG | + | chr5_4:35403807-35403826 | None:intergenic | 50.0% | |
| CACGACACGTGTCTAACACG+AGG | - | chr5_4:35402123-35402142 | Msa0849110:intron | 55.0% | |
| ACGAGGACACACCTTATCCG+AGG | - | chr5_4:35402140-35402159 | Msa0849110:intron | 55.0% | |
| TATGAAGCACGGACGCTCCT+CGG | + | chr5_4:35402160-35402179 | None:intergenic | 55.0% | |
| GTGTGTGCGCGCGCAATTTA+TGG | + | chr5_4:35402305-35402324 | None:intergenic | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr5_4:35402688-35402707 | None:intergenic | 55.0% | |
| AGCTCCGACACAACTCAGAG+AGG | - | chr5_4:35402694-35402713 | Msa0849110:intron | 55.0% | |
| CATCAGCAACCATCACCTGC+AGG | + | chr5_4:35404601-35404620 | None:intergenic | 55.0% | |
| CACTGACACCGGACACGACA+CGG | - | chr5_4:35402026-35402045 | Msa0849110:intron | 60.0% | |
| GTCGGTATCCGTGTCGTGTC+CGG | + | chr5_4:35402037-35402056 | None:intergenic | 60.0% | |
| GTAGGGCAACAGTGCCTGAG+TGG | - | chr5_4:35402466-35402485 | Msa0849110:CDS | 60.0% | |
| TTGAGAAAGCCACCCCAGGC+CGG | - | chr5_4:35403790-35403809 | Msa0849110:intron | 60.0% | |
| GCACGGACGCTCCTCGGATA+AGG | + | chr5_4:35402154-35402173 | None:intergenic | 65.0% | |
| TGAGAAAGCCACCCCAGGCC+GGG | - | chr5_4:35403791-35403810 | Msa0849110:intron | 65.0% | |
| TTCAGATTCCCGGCCTGGGG+TGG | + | chr5_4:35403802-35403821 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35401391 | 35404812 | 35401391 | ID=Msa0849110;Name=Msa0849110 |
| chr5_4 | mRNA | 35401391 | 35404812 | 35401391 | ID=Msa0849110-mRNA-1;Parent=Msa0849110;Name=Msa0849110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=57|1|1|1|0.5|0.33|3|194|156 |
| chr5_4 | exon | 35401391 | 35401846 | 35401391 | ID=Msa0849110-mRNA-1:exon:11852;Parent=Msa0849110-mRNA-1 |
| chr5_4 | exon | 35402371 | 35402521 | 35402371 | ID=Msa0849110-mRNA-1:exon:11851;Parent=Msa0849110-mRNA-1 |
| chr5_4 | exon | 35404698 | 35404812 | 35404698 | ID=Msa0849110-mRNA-1:exon:11850;Parent=Msa0849110-mRNA-1 |
| chr5_4 | five_prime_UTR | 35404756 | 35404812 | 35404756 | ID=Msa0849110-mRNA-1:five_prime_utr;Parent=Msa0849110-mRNA-1 |
| chr5_4 | CDS | 35404698 | 35404755 | 35404698 | ID=Msa0849110-mRNA-1:cds;Parent=Msa0849110-mRNA-1 |
| chr5_4 | CDS | 35402371 | 35402521 | 35402371 | ID=Msa0849110-mRNA-1:cds;Parent=Msa0849110-mRNA-1 |
| chr5_4 | CDS | 35401585 | 35401846 | 35401585 | ID=Msa0849110-mRNA-1:cds;Parent=Msa0849110-mRNA-1 |
| chr5_4 | three_prime_UTR | 35401391 | 35401584 | 35401391 | ID=Msa0849110-mRNA-1:three_prime_utr;Parent=Msa0849110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
