AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229170 MtrunA17_Chr4g0052231 93.440 747 37 4 1 745 1 737 0.0 1155
Msa0229170 MtrunA17_Chr4g0037051 61.429 210 61 3 202 411 143 332 1.45e-81 265
Msa0229170 MtrunA17_Chr4g0037061 46.719 381 129 20 409 745 12 362 8.65e-61 209
Msa0229170 MtrunA17_Chr3g0137811 52.632 133 48 6 614 741 8 130 7.29e-26 103
Msa0229170 MtrunA17_Chr3g0137801 57.031 128 42 6 446 569 2 120 8.67e-22 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229170 AT3G01160.1 48.173 739 309 23 21 736 4 691 9.91e-166 495

Find 177 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCGTCATTACTATAAAA+TGG 0.210954 2_2:-776346 Msa0229170:CDS
TTCTTCTTCTTCTTAATATC+AGG 0.236398 2_2:+773587 None:intergenic
GAAATCAAAGCAAGATAAAT+TGG 0.239661 2_2:-772743 Msa0229170:CDS
GAACTCCGGCGGTGTGTTTC+CGG 0.247725 2_2:+776713 None:intergenic
CTGCTTCTGTGCCAGCTGCC+TGG 0.262136 2_2:+772888 None:intergenic
TAAATTGGAGTTATCATCTT+TGG 0.267442 2_2:-772728 Msa0229170:CDS
AGATATAAGCAAACATATTA+TGG 0.278395 2_2:-773792 Msa0229170:CDS
CTGCGAATTAGCCTTATCTT+TGG 0.280384 2_2:+776377 None:intergenic
ATAAACTATACCTGAATTTC+AGG 0.285468 2_2:+776081 None:intergenic
CCACCGATCCACAATTTAAA+AGG 0.293286 2_2:-773292 Msa0229170:intron
AAGCTCTTCTTTGCTTGCTT+TGG 0.294428 2_2:+773508 None:intergenic
ACTATTTATCCAACCGAGTT+TGG 0.299625 2_2:-775583 Msa0229170:CDS
TAGGCTGGCTGTTGTTAATA+TGG 0.299951 2_2:-775790 Msa0229170:CDS
ATGAATGAGGAGGAAGTTAA+AGG 0.319405 2_2:-775550 Msa0229170:CDS
GAAGACAATTGTGTTTCTTT+CGG 0.328663 2_2:+772817 None:intergenic
CATCGAATCCACTTGACTTA+AGG 0.335239 2_2:-774707 Msa0229170:CDS
TCTTTGTTCTCGTAGTTTGC+AGG 0.342246 2_2:+774551 None:intergenic
TTTATCAGACTTCTTCGAAT+TGG 0.349081 2_2:+776584 None:intergenic
TGCGAATTAGCCTTATCTTT+GGG 0.350288 2_2:+776378 None:intergenic
CATCGCAATGGGATCCAAAA+AGG 0.357185 2_2:-776682 Msa0229170:exon
GCAACCTTTGTTTGATGCTT+TGG 0.358480 2_2:+776480 None:intergenic
GCGAAACTGGAGATTGATAA+TGG 0.358492 2_2:-776228 Msa0229170:CDS
TGGCTACCCCATCCATATCT+TGG 0.367484 2_2:+773528 None:intergenic
AAGGAGAAGGGTGGGGAAGA+AGG 0.368948 2_2:-772778 Msa0229170:CDS
GAAAGTTAAGAATGCGAAAC+TGG 0.371956 2_2:-776241 Msa0229170:CDS
AGATCATAAGCTCCAAGATA+TGG 0.384646 2_2:-773540 Msa0229170:CDS
GGATCATCAAATGCATTGTT+TGG 0.388107 2_2:+773356 None:intergenic
AGATGATGATGCCATGGATA+TGG 0.388730 2_2:-773840 Msa0229170:CDS
ACAGTAAAGTTGAACTTACT+TGG 0.391491 2_2:-774505 Msa0229170:CDS
AGAGGATGAACCTGAAATTC+AGG 0.394746 2_2:-776091 Msa0229170:intron
AAGGTTTATTCCAGACGATA+TGG 0.401282 2_2:-774688 Msa0229170:CDS
AGCAGGCATGTGGTTGGTAT+TGG 0.402016 2_2:-772508 Msa0229170:three_prime_UTR
GGATAATGATGATGAATTAG+AGG 0.406042 2_2:-776271 Msa0229170:CDS
ATCTTGCAAACCTGTATTGA+AGG 0.406255 2_2:+773811 None:intergenic
CGCCGTGTATGCCAGGCAGC+TGG 0.411298 2_2:-772899 Msa0229170:CDS
AGGAGAAGGGTGGGGAAGAA+GGG 0.411300 2_2:-772777 Msa0229170:CDS
TCACCATCAAATAGAGCAAC+AGG 0.414563 2_2:+775526 None:intergenic
CCTCCTCATTCATACGTTGA+AGG 0.416581 2_2:+775560 None:intergenic
ATTTATACAGAACTTCTCAT+TGG 0.417011 2_2:-772327 Msa0229170:three_prime_UTR
ATTCATATATAACTTCTCAT+AGG 0.419026 2_2:-772375 Msa0229170:three_prime_UTR
GGGCCTGTTGCTCTATTTGA+TGG 0.419143 2_2:-775529 Msa0229170:CDS
CAATTGTCTTCTGATGGTTC+TGG 0.419907 2_2:-772805 Msa0229170:CDS
TATTGACATCAGAGGATAGC+TGG 0.422896 2_2:+772674 None:intergenic
AGTTCATTAGCCCCACCTAA+TGG 0.423520 2_2:-775622 Msa0229170:CDS
TCTTTGTCATTACTGTGTAA+TGG 0.425826 2_2:+776561 None:intergenic
TTCCATTCAAGTGAGTAGAT+TGG 0.427627 2_2:+772591 None:intergenic
ACCGATTTGACCAGTCCATT+AGG 0.435915 2_2:+775607 None:intergenic
GTCTGAAGAGAGCGGTGATT+CGG 0.446713 2_2:-776199 Msa0229170:CDS
CAAACATATTATGGAAAAGA+AGG 0.449002 2_2:-773783 Msa0229170:CDS
ACCTCTGATGCAACATCCTT+AGG 0.449293 2_2:+774651 None:intergenic
GCAGGAGCGCCGTGTATGCC+AGG 0.451654 2_2:-772906 Msa0229170:intron
GAAAATCACAATTTAAGAAA+AGG 0.454669 2_2:-772639 Msa0229170:CDS
AAGTTGGAATTCATTCCAAA+AGG 0.458068 2_2:-772248 Msa0229170:three_prime_UTR
ACCTAATGGACTGGTCAAAT+CGG 0.462020 2_2:-775608 Msa0229170:CDS
TTCGTCGTCGGCATCGCAAT+GGG 0.468489 2_2:-776693 Msa0229170:exon
AGTTGGAATTCATTCCAAAA+GGG 0.468556 2_2:-772247 Msa0229170:three_prime_UTR
GATGACAAGGGGACAGGTAC+TGG 0.470311 2_2:-773470 Msa0229170:CDS
AGAACCACGACGACAACAAA+GGG 0.472013 2_2:-776650 Msa0229170:CDS
GTGAAGAATTATCAGTAGAA+AGG 0.480256 2_2:-772855 Msa0229170:CDS
GAACAAAGATTTCTATTCTC+GGG 0.481122 2_2:-774537 Msa0229170:CDS
AGAACAAAGATTTCTATTCT+CGG 0.483286 2_2:-774538 Msa0229170:CDS
ACCTTTGTTTGATGCTTTGG+TGG 0.487769 2_2:+776483 None:intergenic
CTGGTATGAAGGAGAAGGGT+GGG 0.492784 2_2:-772786 Msa0229170:CDS
TTCTGATGGTTCTGGTATGA+AGG 0.495916 2_2:-772797 Msa0229170:CDS
ATGGAGGTGACCTTCAATAC+AGG 0.496342 2_2:-773821 Msa0229170:CDS
AGGCTTAGAACACAATGGTT+AGG 0.497747 2_2:+772292 None:intergenic
GCTGGCACAGAAGCAGCAGA+AGG 0.499989 2_2:-772881 Msa0229170:CDS
GGGTTTACCTCGCTTATCGA+CGG 0.500012 2_2:+776398 None:intergenic
TGCCAGCTGCCTGGCATACA+CGG 0.501362 2_2:+772897 None:intergenic
ATAGCTGGCTCAGTTGGAAA+TGG 0.501819 2_2:-773990 Msa0229170:intron
ATTGTGATAGCTGGCTCAGT+TGG 0.502360 2_2:-773996 Msa0229170:intron
GATGTCAATACAAAGAAAGC+TGG 0.502558 2_2:-772661 Msa0229170:CDS
TGTTTGAATTCCATATCGTC+TGG 0.504264 2_2:+774678 None:intergenic
GCGATGCCGACGACGAACTC+CGG 0.504422 2_2:+776699 None:intergenic
GAAACACAATTGTCTTCTGA+TGG 0.505036 2_2:-772811 Msa0229170:CDS
TGAAGAATTATCAGTAGAAA+GGG 0.505273 2_2:-772854 Msa0229170:CDS
TGAATGAGGAGGAAGTTAAA+GGG 0.505616 2_2:-775549 Msa0229170:CDS
GAGACCTTGTGAAATTGTTA+CGG 0.506522 2_2:-772568 Msa0229170:three_prime_UTR
GGGGACAGGTACTGGTCTCA+AGG 0.508304 2_2:-773462 Msa0229170:CDS
TGATTCGGAGGCTGATGCTA+TGG 0.508685 2_2:-776184 Msa0229170:CDS
GAAGGAGCTGCTGAAGTTTG+TGG 0.508723 2_2:+776778 None:intergenic
GCGGAAATTCACTGACGAGC+AGG 0.510238 2_2:-774447 Msa0229170:intron
GTCCAATCTACTCACTTGAA+TGG 0.511568 2_2:-772593 Msa0229170:three_prime_UTR
GGTTTACCTCGCTTATCGAC+GGG 0.511757 2_2:+776399 None:intergenic
GTTCGTCGTCGGCATCGCAA+TGG 0.511959 2_2:-776694 Msa0229170:exon
GACAATAATTCAGATGAAGA+TGG 0.518699 2_2:-773863 Msa0229170:CDS
AAGTGATGAAGACGATAGTG+AGG 0.522461 2_2:-775494 Msa0229170:CDS
GCGAGGTAAACCCAAAGATA+AGG 0.522552 2_2:-776388 Msa0229170:CDS
TTATCGACGGGTGCAGAAGA+AGG 0.525290 2_2:+776411 None:intergenic
AGAGAGAACGGCAAAGGTGA+AGG 0.525755 2_2:+776760 None:intergenic
ATCTGAATTATTGTCAAGCA+AGG 0.527250 2_2:+773871 None:intergenic
TGCGTGCATATGAAAAGAGC+AGG 0.528143 2_2:-775417 Msa0229170:CDS
AACCATTGTGTTCTAAGCCT+CGG 0.529208 2_2:-772289 Msa0229170:three_prime_UTR
GGAATAAACCTTAAGTCAAG+TGG 0.531217 2_2:+774699 None:intergenic
CACATTTACAAAGAAAATGA+TGG 0.532366 2_2:-774747 Msa0229170:CDS
AGATTGAGAAAGAAACTCAT+AGG 0.533078 2_2:-775809 Msa0229170:CDS
CGAAGATCCTCGATTTGCCA+TGG 0.535647 2_2:-776532 Msa0229170:CDS
TTTGTAAATGTGATCTGCTG+TGG 0.536863 2_2:+774758 None:intergenic
TCCTAAGGATGTTGCATCAG+AGG 0.537358 2_2:-774652 Msa0229170:intron
AGTTGAACTTACTTGGGATG+AGG 0.538968 2_2:-774498 Msa0229170:CDS
CTTGCTGATGACAAGGGGAC+AGG 0.541409 2_2:-773476 Msa0229170:CDS
CGTTGAAGGCCAAACTCGGT+TGG 0.544452 2_2:+775574 None:intergenic
AGAACAGAGTAGTGATGAGG+AGG 0.546273 2_2:-776292 Msa0229170:CDS
TTCGAGCAAATACTTTGAAG+CGG 0.548379 2_2:-774466 Msa0229170:CDS
ATAAGCTCCAAGATATGGAT+GGG 0.550287 2_2:-773535 Msa0229170:CDS
GGAATTCAAACAGCCTCCTA+AGG 0.550469 2_2:-774667 Msa0229170:CDS
CATAAGCTCCAAGATATGGA+TGG 0.551085 2_2:-773536 Msa0229170:CDS
TTCAAAGTATTTGCTCGAAG+AGG 0.553042 2_2:+774470 None:intergenic
TGGCCTTCAACGTATGAATG+AGG 0.554948 2_2:-775563 Msa0229170:CDS
AAGAACCACGACGACAACAA+AGG 0.555045 2_2:-776651 Msa0229170:CDS
CAAAGATAAGGCTAATTCGC+AGG 0.556367 2_2:-776376 Msa0229170:CDS
GCGGAGAATGCTATTGATGA+GGG 0.557091 2_2:-773386 Msa0229170:CDS
GAAGAACAATGGCAAGCGTA+AGG 0.557289 2_2:-776616 Msa0229170:CDS
AGTAGAACAGAGTAGTGATG+AGG 0.560231 2_2:-776295 Msa0229170:CDS
TGGTATGAAGGAGAAGGGTG+GGG 0.563117 2_2:-772785 Msa0229170:CDS
CAGTAAAGTTGAACTTACTT+GGG 0.565191 2_2:-774504 Msa0229170:CDS
ATTTGACCAGTCCATTAGGT+GGG 0.566867 2_2:+775611 None:intergenic
CTGGCACAGAAGCAGCAGAA+GGG 0.567081 2_2:-772880 Msa0229170:CDS
TGGCTGTTGTTAATATGGAC+TGG 0.567725 2_2:-775785 Msa0229170:CDS
TGAGAAAGAAACTCATAGGC+TGG 0.567983 2_2:-775805 Msa0229170:CDS
TTACGGCCCCTTCCACATGC+CGG 0.569934 2_2:-772551 Msa0229170:three_prime_UTR
GGGACAGGTACTGGTCTCAA+GGG 0.570096 2_2:-773461 Msa0229170:CDS
TCTTCCCTTTGTTGTCGTCG+TGG 0.570184 2_2:+776646 None:intergenic
GGTTGGTATTGGATCTATTG+AGG 0.571098 2_2:-772497 Msa0229170:three_prime_UTR
TGTTTCAGAGAGAACGGCAA+AGG 0.573583 2_2:+776754 None:intergenic
CATACGTTGAAGGCCAAACT+CGG 0.576188 2_2:+775570 None:intergenic
ACTGCTTGTTTCAGAGAGAA+CGG 0.576342 2_2:+776748 None:intergenic
ATTTAAGAAAAGGAAGCACT+AGG 0.576581 2_2:-772629 Msa0229170:exon
ATCATGAAAATCTTCTTCAT+CGG 0.577014 2_2:+775462 None:intergenic
GGTTCTGGTATGAAGGAGAA+GGG 0.577877 2_2:-772790 Msa0229170:CDS
CATATATAACTTCTCATAGG+TGG 0.578056 2_2:-772372 Msa0229170:three_prime_UTR
ATTAGCCCCACCTAATGGAC+TGG 0.582985 2_2:-775617 Msa0229170:CDS
ATTACACAGTAATGACAAAG+AGG 0.586020 2_2:-776559 Msa0229170:CDS
TTTCTTTGTATTGACATCAG+AGG 0.587167 2_2:+772666 None:intergenic
GGCGGAGAATGCTATTGATG+AGG 0.588252 2_2:-773387 Msa0229170:CDS
TAAAGAAATAGATATTGATA+CGG 0.588626 2_2:-776148 Msa0229170:CDS
TCTGGTATGAAGGAGAAGGG+TGG 0.592849 2_2:-772787 Msa0229170:CDS
ACTGTTGCTTGCTGATGACA+AGG 0.595700 2_2:-773483 Msa0229170:CDS
GAAGGTCACCTCCATATCCA+TGG 0.597313 2_2:+773829 None:intergenic
GATTTGACCAGTCCATTAGG+TGG 0.602078 2_2:+775610 None:intergenic
TGAAGAGAGCGGTGATTCGG+AGG 0.603835 2_2:-776196 Msa0229170:CDS
TTTGACCAGTCCATTAGGTG+GGG 0.605201 2_2:+775612 None:intergenic
TCTGATGCAACATCCTTAGG+AGG 0.610046 2_2:+774654 None:intergenic
CATATGAAAAGAGCAGGATG+AGG 0.614560 2_2:-775411 Msa0229170:intron
AGATGACTTCTTCATTGATG+AGG 0.615496 2_2:-773612 Msa0229170:CDS
AACTCTTGTGAGTGAACATG+CGG 0.617686 2_2:+776439 None:intergenic
TGGTTCTGGTATGAAGGAGA+AGG 0.619698 2_2:-772791 Msa0229170:CDS
ATGCCGACGACGAACTCCGG+CGG 0.622468 2_2:+776702 None:intergenic
AAGAAGAAGATGAAGAACAA+TGG 0.630023 2_2:-776627 Msa0229170:CDS
ATTGATACGGATACTGATGA+TGG 0.633028 2_2:-776135 Msa0229170:CDS
AGATGGAGATGATGATGCCA+TGG 0.633714 2_2:-773846 Msa0229170:CDS
AAGCAGTGAAAACAACTCGC+CGG 0.639422 2_2:-776732 Msa0229170:five_prime_UTR
TGATGAGAACGATTCTGAAG+AGG 0.644883 2_2:-776109 Msa0229170:CDS
ACACCGCCGGAGTTCGTCGT+CGG 0.649037 2_2:-776705 Msa0229170:five_prime_UTR
TGTTGCTTGCTGATGACAAG+GGG 0.651064 2_2:-773481 Msa0229170:CDS
GTGTGAACCATGGCAAATCG+AGG 0.655246 2_2:+776525 None:intergenic
CAGTTTGGGAAGAATATCTG+AGG 0.657281 2_2:-773745 Msa0229170:CDS
TAAGCTCCAAGATATGGATG+GGG 0.662936 2_2:-773534 Msa0229170:CDS
GAGTGATAGTGATGATAGTG+AGG 0.664566 2_2:-773945 Msa0229170:CDS
CCTTCAACGTATGAATGAGG+AGG 0.665822 2_2:-775560 Msa0229170:CDS
ACTCGCCGGAAACACACCGC+CGG 0.668521 2_2:-776718 Msa0229170:five_prime_UTR
ACGTGGATCAGTGTGAACCA+TGG 0.669461 2_2:+776515 None:intergenic
AGTGAGTAGATTGGACCACA+AGG 0.675512 2_2:+772600 None:intergenic
CGGAGAATGCTATTGATGAG+GGG 0.677097 2_2:-773385 Msa0229170:CDS
TCTGCACCCGTCGATAAGCG+AGG 0.680086 2_2:-776405 Msa0229170:CDS
TTTGGTGGTTCACGAAAACG+TGG 0.682242 2_2:+776498 None:intergenic
CTGTTGCTTGCTGATGACAA+GGG 0.682674 2_2:-773482 Msa0229170:CDS
TGATGATGCCATGGATATGG+AGG 0.684743 2_2:-773837 Msa0229170:CDS
TATGGACTGGCGGTATGTGA+AGG 0.687556 2_2:-775772 Msa0229170:intron
GGAACTGAGTCTGAAGAGAG+CGG 0.689169 2_2:-776207 Msa0229170:CDS
ACCACCAAAGCATCAAACAA+AGG 0.695193 2_2:-776484 Msa0229170:CDS
CTGTTGTTAATATGGACTGG+CGG 0.700073 2_2:-775782 Msa0229170:CDS
TCATTACTATAAAATGGACG+AGG 0.707524 2_2:-776340 Msa0229170:CDS
GAGAAGATAGATGCAAAACG+TGG 0.707824 2_2:+773335 None:intergenic
ATAACAATGAGACTGATGAG+CGG 0.723456 2_2:-773922 Msa0229170:CDS
TGCCGAGGCTTAGAACACAA+TGG 0.736491 2_2:+772287 None:intergenic
GGGGCCGTAACAATTTCACA+AGG 0.738185 2_2:+772564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTATTATTAGTAATATT+AGG - chr2_2:773073-773092 Msa0229170:intron 10.0%
!!! GTAAAATAATTTTAATTGAT+CGG - chr2_2:773120-773139 Msa0229170:intron 10.0%
!!! AAATATTGAAAATTATTTCT+TGG - chr2_2:775913-775932 Msa0229170:intron 10.0%
!!! ACAAAAATTAAATTTTAGAA+AGG + chr2_2:776132-776151 None:intergenic 10.0%
!! TAAAGAAATAGATATTGATA+CGG - chr2_2:772915-772934 Msa0229170:intron 15.0%
!!! TATAGTTTATGCATTTTATT+TGG - chr2_2:772995-773014 Msa0229170:intron 15.0%
!!! TAAGTGACATAATTTTAAAA+TGG + chr2_2:773048-773067 None:intergenic 15.0%
!! TTAGTAATATTAGGATTTAA+AGG - chr2_2:773082-773101 Msa0229170:intron 15.0%
!! TAATAATACTTAGAGTTTAA+CGG + chr2_2:773209-773228 None:intergenic 15.0%
!! AAATGACTAAATAAAAAATG+AGG + chr2_2:774738-774757 None:intergenic 15.0%
!! TTATAAATGTGAATACTATT+TGG + chr2_2:774761-774780 None:intergenic 15.0%
!!! TACTTATTATCTTTTTTTCT+AGG + chr2_2:775167-775186 None:intergenic 15.0%
!!! TATAATCTGAAGTTTAAAAA+AGG - chr2_2:775626-775645 Msa0229170:CDS 15.0%
!!! ATAAAATACCTTTTAAATTG+TGG + chr2_2:775782-775801 None:intergenic 15.0%
!!! AATAATTTTAATTGATCGGT+TGG - chr2_2:773124-773143 Msa0229170:intron 20.0%
!! AATAATACTTAGAGTTTAAC+GGG + chr2_2:773208-773227 None:intergenic 20.0%
!! CTCTAAGTATTATTATGATA+TGG - chr2_2:773214-773233 Msa0229170:intron 20.0%
!! TGATATAATGAATGGTTAAA+GGG + chr2_2:773830-773849 None:intergenic 20.0%
!! TTGATATAATGAATGGTTAA+AGG + chr2_2:773831-773850 None:intergenic 20.0%
!! TTTAACCATTCATTATATCA+AGG - chr2_2:773830-773849 Msa0229170:CDS 20.0%
!! TTAAACCTTGATATAATGAA+TGG + chr2_2:773838-773857 None:intergenic 20.0%
!!! GTGTTGATAAATTTATATCT+TGG - chr2_2:774669-774688 Msa0229170:CDS 20.0%
!! AAAAAAAAACTTAAAGCTCT+GGG + chr2_2:775035-775054 None:intergenic 20.0%
!! AGATATAAGCAAACATATTA+TGG - chr2_2:775271-775290 Msa0229170:intron 20.0%
!! ATAAAAAATCAAGAACAGTT+TGG - chr2_2:775303-775322 Msa0229170:intron 20.0%
!! TAAAAAATCAAGAACAGTTT+GGG - chr2_2:775304-775323 Msa0229170:intron 20.0%
!!! GATTTAGCTAAGAAATTTTT+TGG + chr2_2:775963-775982 None:intergenic 20.0%
!! TATACAAGTTTCTTGAATAA+CGG + chr2_2:776076-776095 None:intergenic 20.0%
!!! ATTTAATTTTTGTTGATTGC+AGG - chr2_2:776139-776158 Msa0229170:CDS 20.0%
!! GAAAATCACAATTTAAGAAA+AGG - chr2_2:776424-776443 Msa0229170:CDS 20.0%
!!! TAAAAATTTTGTTGCAAACT+AGG - chr2_2:776639-776658 Msa0229170:CDS 20.0%
!! ATTCATATATAACTTCTCAT+AGG - chr2_2:776688-776707 Msa0229170:exon 20.0%
!!! GTTTTTGTTTTTGTAAAAGT+TGG - chr2_2:776799-776818 Msa0229170:five_prime_UTR 20.0%
! TCTTCGTCATTACTATAAAA+TGG - chr2_2:772717-772736 Msa0229170:CDS 25.0%
! ATAAACTATACCTGAATTTC+AGG + chr2_2:772985-773004 None:intergenic 25.0%
!! TTTTTACACTGACATCTAAT+AGG + chr2_2:773169-773188 None:intergenic 25.0%
! AGTATTATTATGATATGGAC+AGG - chr2_2:773219-773238 Msa0229170:intron 25.0%
!!! TTGTGTTTTGTTGTGTTTTT+TGG - chr2_2:773388-773407 Msa0229170:CDS 25.0%
! ATCATGAAAATCTTCTTCAT+CGG + chr2_2:773604-773623 None:intergenic 25.0%
! TTGTGATATATTTGCTTGAA+TGG - chr2_2:773700-773719 Msa0229170:CDS 25.0%
!! ATCAGCGTGTAAAATATTTT+CGG + chr2_2:773879-773898 None:intergenic 25.0%
!! AGATTCAAGTTAGAAAAACA+TGG + chr2_2:774234-774253 None:intergenic 25.0%
! CACATTTACAAAGAAAATGA+TGG - chr2_2:774316-774335 Msa0229170:intron 25.0%
! TTTATATATATGCTGTATCG+TGG - chr2_2:774443-774462 Msa0229170:intron 25.0%
!! ATCGTGGATTATAATAGAAT+AGG - chr2_2:774459-774478 Msa0229170:CDS 25.0%
! AGAACAAAGATTTCTATTCT+CGG - chr2_2:774525-774544 Msa0229170:CDS 25.0%
! ACATCTGTACTAGTTATTAA+GGG + chr2_2:774879-774898 None:intergenic 25.0%
! TACATCTGTACTAGTTATTA+AGG + chr2_2:774880-774899 None:intergenic 25.0%
! TAACAAAAAAAGACAAGTAC+AGG + chr2_2:774904-774923 None:intergenic 25.0%
! TTAATTGTTATGTATCTGTG+TGG - chr2_2:774921-774940 Msa0229170:intron 25.0%
! CATTACATAAAGAATATCAG+TGG + chr2_2:774963-774982 None:intergenic 25.0%
! GAAAAAAAAACTTAAAGCTC+TGG + chr2_2:775036-775055 None:intergenic 25.0%
! CAAACATATTATGGAAAAGA+AGG - chr2_2:775280-775299 Msa0229170:intron 25.0%
! TTCTTCTTCTTCTTAATATC+AGG + chr2_2:775479-775498 None:intergenic 25.0%
!!! TCTTTGTCATTTTTACTTTC+TGG + chr2_2:775506-775525 None:intergenic 25.0%
!! ATACCTTTTAAATTGTGGAT+CGG + chr2_2:775777-775796 None:intergenic 25.0%
!! AAAATTATTTCTTGGCATGA+TGG - chr2_2:775921-775940 Msa0229170:intron 25.0%
! GAGTTAGACAAGATAATATT+GGG + chr2_2:775991-776010 None:intergenic 25.0%
! TGAGTTAGACAAGATAATAT+TGG + chr2_2:775992-776011 None:intergenic 25.0%
!!! ATTTGTTATGTTGCTAAGAT+TGG - chr2_2:776020-776039 Msa0229170:intron 25.0%
! ATACAAGTTTCTTGAATAAC+GGG + chr2_2:776075-776094 None:intergenic 25.0%
! AGAGTTTACTACATGAAAAT+AGG + chr2_2:776101-776120 None:intergenic 25.0%
! TGAAGAATTATCAGTAGAAA+GGG - chr2_2:776209-776228 Msa0229170:CDS 25.0%
! GAAATCAAAGCAAGATAAAT+TGG - chr2_2:776320-776339 Msa0229170:CDS 25.0%
! TAAATTGGAGTTATCATCTT+TGG - chr2_2:776335-776354 Msa0229170:CDS 25.0%
! ATTTATACAGAACTTCTCAT+TGG - chr2_2:776736-776755 Msa0229170:five_prime_UTR 25.0%
!!! GTTCTTCTTGTTTTCCTTTT+TGG + chr2_2:772398-772417 None:intergenic 30.0%
AAGAAGAAGATGAAGAACAA+TGG - chr2_2:772436-772455 Msa0229170:three_prime_UTR 30.0%
TTTATCAGACTTCTTCGAAT+TGG + chr2_2:772482-772501 None:intergenic 30.0%
TCTTTGTCATTACTGTGTAA+TGG + chr2_2:772505-772524 None:intergenic 30.0%
ATTACACAGTAATGACAAAG+AGG - chr2_2:772504-772523 Msa0229170:three_prime_UTR 30.0%
TCATTACTATAAAATGGACG+AGG - chr2_2:772723-772742 Msa0229170:CDS 30.0%
! GGATAATGATGATGAATTAG+AGG - chr2_2:772792-772811 Msa0229170:CDS 30.0%
AGATTGAGAAAGAAACTCAT+AGG - chr2_2:773254-773273 Msa0229170:intron 30.0%
! AAACACAATTGACTCACATT+AGG + chr2_2:773330-773349 None:intergenic 30.0%
! TGGAGTTCAAAGATTTTGTT+TGG - chr2_2:773353-773372 Msa0229170:CDS 30.0%
!!! TTGTTGTGTTTTTTGGTTGT+AGG - chr2_2:773395-773414 Msa0229170:CDS 30.0%
TCAAGCAAATATATCACAAC+AGG + chr2_2:773699-773718 None:intergenic 30.0%
! TTTTCAACTTGAATCAAGCA+TGG - chr2_2:773755-773774 Msa0229170:CDS 30.0%
ATTCTAGATCATAAGAAAGG+AGG + chr2_2:774029-774048 None:intergenic 30.0%
!!! TGTCATTACGCTTTGTTTTA+TGG - chr2_2:774076-774095 Msa0229170:intron 30.0%
TTTATGGAGATTATACTTCC+CGG - chr2_2:774092-774111 Msa0229170:intron 30.0%
AATATGAGTGACATGTGATA+CGG + chr2_2:774156-774175 None:intergenic 30.0%
! TTCAAGTTAGAAAAACATGG+TGG + chr2_2:774231-774250 None:intergenic 30.0%
GAACAAAGATTTCTATTCTC+GGG - chr2_2:774526-774545 Msa0229170:CDS 30.0%
ACAGTAAAGTTGAACTTACT+TGG - chr2_2:774558-774577 Msa0229170:intron 30.0%
CAGTAAAGTTGAACTTACTT+GGG - chr2_2:774559-774578 Msa0229170:intron 30.0%
TATCTTGGAAAAATCTTGTG+TGG - chr2_2:774684-774703 Msa0229170:CDS 30.0%
! TATCAAATTTTATGCTGCGA+TGG - chr2_2:774784-774803 Msa0229170:CDS 30.0%
GTTATTAAGGGACAAAAGAA+TGG + chr2_2:774867-774886 None:intergenic 30.0%
ATCTGAATTATTGTCAAGCA+AGG + chr2_2:775195-775214 None:intergenic 30.0%
GACAATAATTCAGATGAAGA+TGG - chr2_2:775200-775219 Msa0229170:intron 30.0%
!!! ATGCTTTGATTTGTTTTTCC+TGG + chr2_2:775366-775385 None:intergenic 30.0%
! TCTGAAGTTTAAAAAAGGCA+AGG - chr2_2:775631-775650 Msa0229170:CDS 30.0%
CTGAAGTTTAAAAAAGGCAA+GGG - chr2_2:775632-775651 Msa0229170:CDS 30.0%
TTATGTTGCTAAGATTGGAA+TGG - chr2_2:776025-776044 Msa0229170:intron 30.0%
! TAACGGGAAGTACAATTATA+GGG + chr2_2:776059-776078 None:intergenic 30.0%
! ATAACGGGAAGTACAATTAT+AGG + chr2_2:776060-776079 None:intergenic 30.0%
GTGAAGAATTATCAGTAGAA+AGG - chr2_2:776208-776227 Msa0229170:CDS 30.0%
GAAGACAATTGTGTTTCTTT+CGG + chr2_2:776249-776268 None:intergenic 30.0%
! TTTCTTTGTATTGACATCAG+AGG + chr2_2:776400-776419 None:intergenic 30.0%
!! ATTTAAGAAAAGGAAGCACT+AGG - chr2_2:776434-776453 Msa0229170:CDS 30.0%
! AAATTTTGTTGCAAACTAGG+TGG - chr2_2:776642-776661 Msa0229170:CDS 30.0%
CATATATAACTTCTCATAGG+TGG - chr2_2:776691-776710 Msa0229170:exon 30.0%
AAGTTGGAATTCATTCCAAA+AGG - chr2_2:776815-776834 Msa0229170:five_prime_UTR 30.0%
AGTTGGAATTCATTCCAAAA+GGG - chr2_2:776816-776835 Msa0229170:five_prime_UTR 30.0%
!! TGCTGAAGTTTGTGGTTTTA+GGG + chr2_2:772280-772299 None:intergenic 35.0%
!! TGCGAATTAGCCTTATCTTT+GGG + chr2_2:772688-772707 None:intergenic 35.0%
GAAAGTTAAGAATGCGAAAC+TGG - chr2_2:772822-772841 Msa0229170:CDS 35.0%
ATTGATACGGATACTGATGA+TGG - chr2_2:772928-772947 Msa0229170:intron 35.0%
ATTATGATATGGACAGGAAG+AGG - chr2_2:773225-773244 Msa0229170:intron 35.0%
GTGAGTCAATTGTGTTTATC+TGG - chr2_2:773333-773352 Msa0229170:CDS 35.0%
ACTATTTATCCAACCGAGTT+TGG - chr2_2:773480-773499 Msa0229170:CDS 35.0%
ATGAATGAGGAGGAAGTTAA+AGG - chr2_2:773513-773532 Msa0229170:CDS 35.0%
TGAATGAGGAGGAAGTTAAA+GGG - chr2_2:773514-773533 Msa0229170:CDS 35.0%
GACAATATCAGCGTGTAAAA+TGG + chr2_2:773885-773904 None:intergenic 35.0%
GAAAGGAGGATAACAAAGAT+AGG + chr2_2:774015-774034 None:intergenic 35.0%
CGCATTCTAGATCATAAGAA+AGG + chr2_2:774032-774051 None:intergenic 35.0%
ATATGAGTGACATGTGATAC+GGG + chr2_2:774155-774174 None:intergenic 35.0%
GCACGTCAAAATAGTAAACA+TGG + chr2_2:774188-774207 None:intergenic 35.0%
TAGAAAAACATGGTGGTAAG+AGG + chr2_2:774224-774243 None:intergenic 35.0%
GAATCTTTATCTTGCTCTCT+AGG - chr2_2:774248-774267 Msa0229170:intron 35.0%
! CTCTAGGTACTATTTTGCTT+TGG - chr2_2:774264-774283 Msa0229170:intron 35.0%
! TAGGTACTATTTTGCTTTGG+TGG - chr2_2:774267-774286 Msa0229170:intron 35.0%
TTTGTAAATGTGATCTGCTG+TGG + chr2_2:774308-774327 None:intergenic 35.0%
GGAATAAACCTTAAGTCAAG+TGG + chr2_2:774367-774386 None:intergenic 35.0%
AAGGTTTATTCCAGACGATA+TGG - chr2_2:774375-774394 Msa0229170:intron 35.0%
TGTTTGAATTCCATATCGTC+TGG + chr2_2:774388-774407 None:intergenic 35.0%
! TTCAAAGTATTTGCTCGAAG+AGG + chr2_2:774596-774615 None:intergenic 35.0%
! TTCGAGCAAATACTTTGAAG+CGG - chr2_2:774597-774616 Msa0229170:intron 35.0%
!! ATCTTGTGTGGTGTTAGTTT+TGG - chr2_2:774696-774715 Msa0229170:CDS 35.0%
AAAATGAGGTAACTACTCAG+AGG + chr2_2:774724-774743 None:intergenic 35.0%
ATCTGTGTGGTAGAAGAAAT+TGG - chr2_2:774934-774953 Msa0229170:intron 35.0%
TCTGTGTGGTAGAAGAAATT+GGG - chr2_2:774935-774954 Msa0229170:intron 35.0%
TTCCTTTCTATTGTGATAGC+TGG - chr2_2:775058-775077 Msa0229170:intron 35.0%
ATAACAATGAGACTGATGAG+CGG - chr2_2:775141-775160 Msa0229170:intron 35.0%
ATCTTGCAAACCTGTATTGA+AGG + chr2_2:775255-775274 None:intergenic 35.0%
AGATGACTTCTTCATTGATG+AGG - chr2_2:775451-775470 Msa0229170:CDS 35.0%
AGATCATAAGCTCCAAGATA+TGG - chr2_2:775523-775542 Msa0229170:CDS 35.0%
ATAAGCTCCAAGATATGGAT+GGG - chr2_2:775528-775547 Msa0229170:CDS 35.0%
AAAAAAGGCAAGGGCAAAAA+AGG - chr2_2:775641-775660 Msa0229170:CDS 35.0%
GGATCATCAAATGCATTGTT+TGG + chr2_2:775710-775729 None:intergenic 35.0%
! CTTTTAAATTGTGGATCGGT+GGG + chr2_2:775773-775792 None:intergenic 35.0%
TCACTACTATTTCACTCTGA+TGG - chr2_2:775867-775886 Msa0229170:intron 35.0%
CACTACTATTTCACTCTGAT+GGG - chr2_2:775868-775887 Msa0229170:intron 35.0%
ACTACTATTTCACTCTGATG+GGG - chr2_2:775869-775888 Msa0229170:intron 35.0%
GAAACACAATTGTCTTCTGA+TGG - chr2_2:776252-776271 Msa0229170:CDS 35.0%
GATGTCAATACAAAGAAAGC+TGG - chr2_2:776402-776421 Msa0229170:CDS 35.0%
TTCCATTCAAGTGAGTAGAT+TGG + chr2_2:776475-776494 None:intergenic 35.0%
GAGACCTTGTGAAATTGTTA+CGG - chr2_2:776495-776514 Msa0229170:CDS 35.0%
TACAAAAACAAAAACTGCCG+AGG + chr2_2:776794-776813 None:intergenic 35.0%
! CTGCTGAAGTTTGTGGTTTT+AGG + chr2_2:772281-772300 None:intergenic 40.0%
ACTGCTTGTTTCAGAGAGAA+CGG + chr2_2:772318-772337 None:intergenic 40.0%
! ACCACCAAAGCATCAAACAA+AGG - chr2_2:772579-772598 Msa0229170:three_prime_UTR 40.0%
! ACCTTTGTTTGATGCTTTGG+TGG + chr2_2:772583-772602 None:intergenic 40.0%
! GCAACCTTTGTTTGATGCTT+TGG + chr2_2:772586-772605 None:intergenic 40.0%
AACTCTTGTGAGTGAACATG+CGG + chr2_2:772627-772646 None:intergenic 40.0%
!! CTGCGAATTAGCCTTATCTT+TGG + chr2_2:772689-772708 None:intergenic 40.0%
CAAAGATAAGGCTAATTCGC+AGG - chr2_2:772687-772706 Msa0229170:CDS 40.0%
AGTAGAACAGAGTAGTGATG+AGG - chr2_2:772768-772787 Msa0229170:CDS 40.0%
GCGAAACTGGAGATTGATAA+TGG - chr2_2:772835-772854 Msa0229170:CDS 40.0%
! TGATGAGAACGATTCTGAAG+AGG - chr2_2:772954-772973 Msa0229170:intron 40.0%
AGAGGATGAACCTGAAATTC+AGG - chr2_2:772972-772991 Msa0229170:intron 40.0%
TGAGAAAGAAACTCATAGGC+TGG - chr2_2:773258-773277 Msa0229170:intron 40.0%
! TAGGCTGGCTGTTGTTAATA+TGG - chr2_2:773273-773292 Msa0229170:intron 40.0%
TGGCTGTTGTTAATATGGAC+TGG - chr2_2:773278-773297 Msa0229170:intron 40.0%
!! CTGTTGTTAATATGGACTGG+CGG - chr2_2:773281-773300 Msa0229170:intron 40.0%
!!! TGTTTTTTGGTTGTAGGCTG+TGG - chr2_2:773401-773420 Msa0229170:CDS 40.0%
ATTTGACCAGTCCATTAGGT+GGG + chr2_2:773455-773474 None:intergenic 40.0%
!! ACCTAATGGACTGGTCAAAT+CGG - chr2_2:773455-773474 Msa0229170:CDS 40.0%
TCACCATCAAATAGAGCAAC+AGG + chr2_2:773540-773559 None:intergenic 40.0%
AAGTGATGAAGACGATAGTG+AGG - chr2_2:773569-773588 Msa0229170:CDS 40.0%
CATATGAAAAGAGCAGGATG+AGG - chr2_2:773652-773671 Msa0229170:CDS 40.0%
TACACGCTGATATTGTCAAG+TGG - chr2_2:773888-773907 Msa0229170:CDS 40.0%
ACACGCTGATATTGTCAAGT+GGG - chr2_2:773889-773908 Msa0229170:CDS 40.0%
TACACGCTGATATTGTCAAG+TGG - chr2_2:773888-773907 Msa0229170:CDS 40.0%
ACACGCTGATATTGTCAAGT+GGG - chr2_2:773889-773908 Msa0229170:CDS 40.0%
GGAGGATAACAAAGATAGGA+AGG + chr2_2:774011-774030 None:intergenic 40.0%
! TGATCTAGAATGCGTCTATG+TGG - chr2_2:774038-774057 Msa0229170:intron 40.0%
ATTATACTTCCCGGAACACA+TGG - chr2_2:774101-774120 Msa0229170:intron 40.0%
TTATACTTCCCGGAACACAT+GGG - chr2_2:774102-774121 Msa0229170:intron 40.0%
TCACTATTTCCCATGTGTTC+CGG + chr2_2:774114-774133 None:intergenic 40.0%
ACATGGTGGTAAGAGGAAAA+GGG + chr2_2:774217-774236 None:intergenic 40.0%
AACATGGTGGTAAGAGGAAA+AGG + chr2_2:774218-774237 None:intergenic 40.0%
CATCGAATCCACTTGACTTA+AGG - chr2_2:774356-774375 Msa0229170:intron 40.0%
! TCTTTGTTCTCGTAGTTTGC+AGG + chr2_2:774515-774534 None:intergenic 40.0%
AGTTGAACTTACTTGGGATG+AGG - chr2_2:774565-774584 Msa0229170:intron 40.0%
GTATATGTATGTGCATGGCA+TGG + chr2_2:774829-774848 None:intergenic 40.0%
TGAGCGTATATGTATGTGCA+TGG + chr2_2:774834-774853 None:intergenic 40.0%
CTGTGTGGTAGAAGAAATTG+GGG - chr2_2:774936-774955 Msa0229170:intron 40.0%
AGCCAGCTATCACAATAGAA+AGG + chr2_2:775063-775082 None:intergenic 40.0%
! GAGTGATAGTGATGATAGTG+AGG - chr2_2:775118-775137 Msa0229170:intron 40.0%
! AGATGATGATGCCATGGATA+TGG - chr2_2:775223-775242 Msa0229170:intron 40.0%
CAGTTTGGGAAGAATATCTG+AGG - chr2_2:775318-775337 Msa0229170:intron 40.0%
AACGTGAGAAAAAGAAAGCC+AGG - chr2_2:775345-775364 Msa0229170:intron 40.0%
CATAAGCTCCAAGATATGGA+TGG - chr2_2:775527-775546 Msa0229170:CDS 40.0%
TAAGCTCCAAGATATGGATG+GGG - chr2_2:775529-775548 Msa0229170:CDS 40.0%
AAGCTCTTCTTTGCTTGCTT+TGG + chr2_2:775558-775577 None:intergenic 40.0%
CAAAAAAGGCAAGGGCAAAA+AGG - chr2_2:775655-775674 Msa0229170:intron 40.0%
GAGAAGATAGATGCAAAACG+TGG + chr2_2:775731-775750 None:intergenic 40.0%
! CCTTTTAAATTGTGGATCGG+TGG + chr2_2:775774-775793 None:intergenic 40.0%
CCACCGATCCACAATTTAAA+AGG - chr2_2:775771-775790 Msa0229170:intron 40.0%
CAATTGTCTTCTGATGGTTC+TGG - chr2_2:776258-776277 Msa0229170:CDS 40.0%
!! TTCTGATGGTTCTGGTATGA+AGG - chr2_2:776266-776285 Msa0229170:CDS 40.0%
TATTGACATCAGAGGATAGC+TGG + chr2_2:776392-776411 None:intergenic 40.0%
!! AGCACTAGGTTTTAACCTTG+TGG - chr2_2:776448-776467 Msa0229170:CDS 40.0%
GTCCAATCTACTCACTTGAA+TGG - chr2_2:776470-776489 Msa0229170:CDS 40.0%
! GGTTGGTATTGGATCTATTG+AGG - chr2_2:776566-776585 Msa0229170:CDS 40.0%
AGGCTTAGAACACAATGGTT+AGG + chr2_2:776774-776793 None:intergenic 40.0%
! AACCATTGTGTTCTAAGCCT+CGG - chr2_2:776774-776793 Msa0229170:five_prime_UTR 40.0%
TGTTTCAGAGAGAACGGCAA+AGG + chr2_2:772312-772331 None:intergenic 45.0%
AAGCAGTGAAAACAACTCGC+CGG - chr2_2:772331-772350 Msa0229170:three_prime_UTR 45.0%
CATCGCAATGGGATCCAAAA+AGG - chr2_2:772381-772400 Msa0229170:three_prime_UTR 45.0%
AAGAACCACGACGACAACAA+AGG - chr2_2:772412-772431 Msa0229170:three_prime_UTR 45.0%
AGAACCACGACGACAACAAA+GGG - chr2_2:772413-772432 Msa0229170:three_prime_UTR 45.0%
GAAGAACAATGGCAAGCGTA+AGG - chr2_2:772447-772466 Msa0229170:three_prime_UTR 45.0%
! TTTGGTGGTTCACGAAAACG+TGG + chr2_2:772568-772587 None:intergenic 45.0%
GCGAGGTAAACCCAAAGATA+AGG - chr2_2:772675-772694 Msa0229170:CDS 45.0%
AGAACAGAGTAGTGATGAGG+AGG - chr2_2:772771-772790 Msa0229170:CDS 45.0%
AGTTCATTAGCCCCACCTAA+TGG - chr2_2:773441-773460 Msa0229170:CDS 45.0%
TTTGACCAGTCCATTAGGTG+GGG + chr2_2:773454-773473 None:intergenic 45.0%
GATTTGACCAGTCCATTAGG+TGG + chr2_2:773456-773475 None:intergenic 45.0%
!! ACCGATTTGACCAGTCCATT+AGG + chr2_2:773459-773478 None:intergenic 45.0%
CATACGTTGAAGGCCAAACT+CGG + chr2_2:773496-773515 None:intergenic 45.0%
TGGCCTTCAACGTATGAATG+AGG - chr2_2:773500-773519 Msa0229170:CDS 45.0%
CCTCCTCATTCATACGTTGA+AGG + chr2_2:773506-773525 None:intergenic 45.0%
CCTTCAACGTATGAATGAGG+AGG - chr2_2:773503-773522 Msa0229170:CDS 45.0%
TGCGTGCATATGAAAAGAGC+AGG - chr2_2:773646-773665 Msa0229170:CDS 45.0%
CACTATTTCCCATGTGTTCC+GGG + chr2_2:774113-774132 None:intergenic 45.0%
GGTAAGAGGAAAAGGGAGAT+GGG + chr2_2:774210-774229 None:intergenic 45.0%
TGGTAAGAGGAAAAGGGAGA+TGG + chr2_2:774211-774230 None:intergenic 45.0%
GGAATTCAAACAGCCTCCTA+AGG - chr2_2:774396-774415 Msa0229170:intron 45.0%
TCTGATGCAACATCCTTAGG+AGG + chr2_2:774412-774431 None:intergenic 45.0%
TCCTAAGGATGTTGCATCAG+AGG - chr2_2:774411-774430 Msa0229170:intron 45.0%
ACCTCTGATGCAACATCCTT+AGG + chr2_2:774415-774434 None:intergenic 45.0%
! ATTGTGATAGCTGGCTCAGT+TGG - chr2_2:775067-775086 Msa0229170:intron 45.0%
! ATAGCTGGCTCAGTTGGAAA+TGG - chr2_2:775073-775092 Msa0229170:intron 45.0%
! AGATGGAGATGATGATGCCA+TGG - chr2_2:775217-775236 Msa0229170:intron 45.0%
! TGATGATGCCATGGATATGG+AGG - chr2_2:775226-775245 Msa0229170:intron 45.0%
ATGGAGGTGACCTTCAATAC+AGG - chr2_2:775242-775261 Msa0229170:intron 45.0%
! ACTGTTGCTTGCTGATGACA+AGG - chr2_2:775580-775599 Msa0229170:CDS 45.0%
! CTGTTGCTTGCTGATGACAA+GGG - chr2_2:775581-775600 Msa0229170:CDS 45.0%
! TGTTGCTTGCTGATGACAAG+GGG - chr2_2:775582-775601 Msa0229170:CDS 45.0%
AAAAGGCAAGGGCAAAAAGG+CGG - chr2_2:775658-775677 Msa0229170:intron 45.0%
GCGGAGAATGCTATTGATGA+GGG - chr2_2:775677-775696 Msa0229170:intron 45.0%
CGGAGAATGCTATTGATGAG+GGG - chr2_2:775678-775697 Msa0229170:intron 45.0%
TCACTCTGATGGGGTAAACT+TGG - chr2_2:775878-775897 Msa0229170:intron 45.0%
CACTCTGATGGGGTAAACTT+GGG - chr2_2:775879-775898 Msa0229170:intron 45.0%
GCATGATGGTTACATTCAGC+TGG - chr2_2:775935-775954 Msa0229170:intron 45.0%
!! TGGTTCTGGTATGAAGGAGA+AGG - chr2_2:776272-776291 Msa0229170:CDS 45.0%
! GGTTCTGGTATGAAGGAGAA+GGG - chr2_2:776273-776292 Msa0229170:CDS 45.0%
AGTGAGTAGATTGGACCACA+AGG + chr2_2:776466-776485 None:intergenic 45.0%
! ATTTTTGCCGGCATGTGGAA+GGG + chr2_2:776522-776541 None:intergenic 45.0%
! TTTACCCCAGCGATTTTTGC+CGG + chr2_2:776534-776553 None:intergenic 45.0%
AAATCGCTGGGGTAAAAAGC+AGG - chr2_2:776538-776557 Msa0229170:CDS 45.0%
GTAAAAAGCAGGCATGTGGT+TGG - chr2_2:776549-776568 Msa0229170:CDS 45.0%
GAAGGAGCTGCTGAAGTTTG+TGG + chr2_2:772288-772307 None:intergenic 50.0%
AGAGAGAACGGCAAAGGTGA+AGG + chr2_2:772306-772325 None:intergenic 50.0%
! TCTTCCCTTTGTTGTCGTCG+TGG + chr2_2:772420-772439 None:intergenic 50.0%
! CGAAGATCCTCGATTTGCCA+TGG - chr2_2:772531-772550 Msa0229170:three_prime_UTR 50.0%
GTGTGAACCATGGCAAATCG+AGG + chr2_2:772541-772560 None:intergenic 50.0%
ACGTGGATCAGTGTGAACCA+TGG + chr2_2:772551-772570 None:intergenic 50.0%
TTATCGACGGGTGCAGAAGA+AGG + chr2_2:772655-772674 None:intergenic 50.0%
GGTTTACCTCGCTTATCGAC+GGG + chr2_2:772667-772686 None:intergenic 50.0%
GGGTTTACCTCGCTTATCGA+CGG + chr2_2:772668-772687 None:intergenic 50.0%
GGAACTGAGTCTGAAGAGAG+CGG - chr2_2:772856-772875 Msa0229170:CDS 50.0%
GTCTGAAGAGAGCGGTGATT+CGG - chr2_2:772864-772883 Msa0229170:CDS 50.0%
! TGATTCGGAGGCTGATGCTA+TGG - chr2_2:772879-772898 Msa0229170:CDS 50.0%
!! CGGTTGGTCTCTTAACTCGA+TGG - chr2_2:773140-773159 Msa0229170:intron 50.0%
!! TATGGACTGGCGGTATGTGA+AGG - chr2_2:773291-773310 Msa0229170:intron 50.0%
! ATTAGCCCCACCTAATGGAC+TGG - chr2_2:773446-773465 Msa0229170:CDS 50.0%
GGGCCTGTTGCTCTATTTGA+TGG - chr2_2:773534-773553 Msa0229170:CDS 50.0%
GAAGGTCACCTCCATATCCA+TGG + chr2_2:775237-775256 None:intergenic 50.0%
TGGCTACCCCATCCATATCT+TGG + chr2_2:775538-775557 None:intergenic 50.0%
AGGCAAGGGCAAAAAAGGCA+AGG - chr2_2:775646-775665 Msa0229170:CDS 50.0%
GGCAAGGGCAAAAAAGGCAA+GGG - chr2_2:775647-775666 Msa0229170:CDS 50.0%
GGCGGAGAATGCTATTGATG+AGG - chr2_2:775676-775695 Msa0229170:intron 50.0%
TCTGGTATGAAGGAGAAGGG+TGG - chr2_2:776276-776295 Msa0229170:CDS 50.0%
CTGGTATGAAGGAGAAGGGT+GGG - chr2_2:776277-776296 Msa0229170:CDS 50.0%
TGGTATGAAGGAGAAGGGTG+GGG - chr2_2:776278-776297 Msa0229170:CDS 50.0%
GGGGCCGTAACAATTTCACA+AGG + chr2_2:776502-776521 None:intergenic 50.0%
! TTTTTGCCGGCATGTGGAAG+GGG + chr2_2:776521-776540 None:intergenic 50.0%
! GATTTTTGCCGGCATGTGGA+AGG + chr2_2:776523-776542 None:intergenic 50.0%
ACATGCCGGCAAAAATCGCT+GGG - chr2_2:776526-776545 Msa0229170:CDS 50.0%
TGGGGTAAAAAGCAGGCATG+TGG - chr2_2:776545-776564 Msa0229170:CDS 50.0%
! AGCAGGCATGTGGTTGGTAT+TGG - chr2_2:776555-776574 Msa0229170:CDS 50.0%
TGCCGAGGCTTAGAACACAA+TGG + chr2_2:776779-776798 None:intergenic 50.0%
TTCGTCGTCGGCATCGCAAT+GGG - chr2_2:772370-772389 Msa0229170:three_prime_UTR 55.0%
! TGAAGAGAGCGGTGATTCGG+AGG - chr2_2:772867-772886 Msa0229170:CDS 55.0%
CGTTGAAGGCCAAACTCGGT+TGG + chr2_2:773492-773511 None:intergenic 55.0%
GCGGAAATTCACTGACGAGC+AGG - chr2_2:774616-774635 Msa0229170:intron 55.0%
CTTGCTGATGACAAGGGGAC+AGG - chr2_2:775587-775606 Msa0229170:CDS 55.0%
GATGACAAGGGGACAGGTAC+TGG - chr2_2:775593-775612 Msa0229170:CDS 55.0%
!! GGGACAGGTACTGGTCTCAA+GGG - chr2_2:775602-775621 Msa0229170:CDS 55.0%
CTGGCACAGAAGCAGCAGAA+GGG - chr2_2:776183-776202 Msa0229170:CDS 55.0%
AAGGAGAAGGGTGGGGAAGA+AGG - chr2_2:776285-776304 Msa0229170:CDS 55.0%
AGGAGAAGGGTGGGGAAGAA+GGG - chr2_2:776286-776305 Msa0229170:CDS 55.0%
! CAGCGATTTTTGCCGGCATG+TGG + chr2_2:776527-776546 None:intergenic 55.0%
CACATGCCGGCAAAAATCGC+TGG - chr2_2:776525-776544 Msa0229170:CDS 55.0%
CATGCCGGCAAAAATCGCTG+GGG - chr2_2:776527-776546 Msa0229170:CDS 55.0%
GAACTCCGGCGGTGTGTTTC+CGG + chr2_2:772353-772372 None:intergenic 60.0%
GTTCGTCGTCGGCATCGCAA+TGG - chr2_2:772369-772388 Msa0229170:three_prime_UTR 60.0%
TCTGCACCCGTCGATAAGCG+AGG - chr2_2:772658-772677 Msa0229170:CDS 60.0%
!! GGGGACAGGTACTGGTCTCA+AGG - chr2_2:775601-775620 Msa0229170:CDS 60.0%
TGCCAGCTGCCTGGCATACA+CGG + chr2_2:776169-776188 None:intergenic 60.0%
GCTGGCACAGAAGCAGCAGA+AGG - chr2_2:776182-776201 Msa0229170:CDS 60.0%
TTACGGCCCCTTCCACATGC+CGG - chr2_2:776512-776531 Msa0229170:CDS 60.0%
ACTCGCCGGAAACACACCGC+CGG - chr2_2:772345-772364 Msa0229170:three_prime_UTR 65.0%
ACACCGCCGGAGTTCGTCGT+CGG - chr2_2:772358-772377 Msa0229170:three_prime_UTR 65.0%
ATGCCGACGACGAACTCCGG+CGG + chr2_2:772364-772383 None:intergenic 65.0%
GCGATGCCGACGACGAACTC+CGG + chr2_2:772367-772386 None:intergenic 65.0%
CTGCTTCTGTGCCAGCTGCC+TGG + chr2_2:776178-776197 None:intergenic 65.0%
!! GCAGGAGCGCCGTGTATGCC+AGG - chr2_2:776157-776176 Msa0229170:CDS 70.0%
CGCCGTGTATGCCAGGCAGC+TGG - chr2_2:776164-776183 Msa0229170:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 772246 776839 772246 ID=Msa0229170;Name=Msa0229170
chr2_2 mRNA 772246 776839 772246 ID=Msa0229170-mRNA-1;Parent=Msa0229170;Name=Msa0229170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=142|1|1|1|1|1|7|384|745
chr2_2 exon 772246 772924 772246 ID=Msa0229170-mRNA-1:exon:233;Parent=Msa0229170-mRNA-1
chr2_2 exon 773293 774008 773293 ID=Msa0229170-mRNA-1:exon:232;Parent=Msa0229170-mRNA-1
chr2_2 exon 774448 774576 774448 ID=Msa0229170-mRNA-1:exon:231;Parent=Msa0229170-mRNA-1
chr2_2 exon 774653 774815 774653 ID=Msa0229170-mRNA-1:exon:230;Parent=Msa0229170-mRNA-1
chr2_2 exon 775412 775668 775412 ID=Msa0229170-mRNA-1:exon:229;Parent=Msa0229170-mRNA-1
chr2_2 exon 775773 775844 775773 ID=Msa0229170-mRNA-1:exon:228;Parent=Msa0229170-mRNA-1
chr2_2 exon 776092 776839 776092 ID=Msa0229170-mRNA-1:exon:227;Parent=Msa0229170-mRNA-1
chr2_2 five_prime_UTR 776698 776839 776698 ID=Msa0229170-mRNA-1:five_prime_utr;Parent=Msa0229170-mRNA-1
chr2_2 CDS 776092 776697 776092 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 CDS 775773 775844 775773 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 CDS 775412 775668 775412 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 CDS 774653 774815 774653 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 CDS 774448 774576 774448 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 CDS 773293 774008 773293 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 CDS 772630 772924 772630 ID=Msa0229170-mRNA-1:cds;Parent=Msa0229170-mRNA-1
chr2_2 three_prime_UTR 772246 772629 772246 ID=Msa0229170-mRNA-1:three_prime_utr;Parent=Msa0229170-mRNA-1
Gene Sequence

>Msa0229170

ATGGGATCCAAAAAGGAAAACAAGAAGAACCACGACGACAACAAAGGGAAGAAGAAGATGAAGAACAATGGCAAGCGTAAGGATTCTTCGTCCAATTCGAAGAAGTCTGATAAACCATTACACAGTAATGACAAAGAGGTTATCGAAGATCCTCGATTTGCCATGGTTCACACTGATCCACGTTTTCGTGAACCACCAAAGCATCAAACAAAGGTTGCGATTGATTCTCGATTCGACCGCATGTTCACTCACAAGAGTTTTTTGCCTTCTTCTGCACCCGTCGATAAGCGAGGTAAACCCAAAGATAAGGCTAATTCGCAGGAACATTCTCTTCGTCATTACTATAAAATGGACGAGGAAGATGATAAGAAGAAGAAGAAAGTAGAACAGAGTAGTGATGAGGAGGATAATGATGATGAATTAGAGGAGTTAGTGAAAGTTAAGAATGCGAAACTGGAGATTGATAATGGAACTGAGTCTGAAGAGAGCGGTGATTCGGAGGCTGATGCTATGGATTCAGATACTGATAAAGAAATAGATATTGATACGGATACTGATGATGGTGTTGATGAGAACGATTCTGAAGAGGATGAACCTGAAATTCAGGAAGAGGTAGCAGAGATTGAGAAAGAAACTCATAGGCTGGCTGTTGTTAATATGGACTGGCGGTATGTGAAGGCTGTGGACTTGTATGTATTATTTAGTTCATTAGCCCCACCTAATGGACTGGTCAAATCGGTAACTATTTATCCAACCGAGTTTGGCCTTCAACGTATGAATGAGGAGGAAGTTAAAGGGCCTGTTGCTCTATTTGATGGTGAAAATAAAAGAAGTGATGAAGACGATAGTGAGGAAGAAGAGACCGATGAAGAAGATTTTCATGATAGTGATTCTGACAATGAGAAGCTGCGTGCATATGAAAAGAGCAGGATGAGGTACTATTTTGCTTTGGTGGAATGTGACTCAAGTGCCACAGCAGATCACATTTACAAAGAAAATGATGGTGTTGAGTTTGAACACTCATCGAATCCACTTGACTTAAGGTTTATTCCAGACGATATGGAATTCAAACAGCCTCCTAAGGATGTTGCATCAGAGATACCTGCAAACTACGAGAACAAAGATTTCTATTCTCGGGCACTTCAGCACAGTAAAGTTGAACTTACTTGGGATGAGGATGAACCTCTTCGAGCAAATACTTTGAAGCGGAAATTCACTGACGAGCAGCTGGCTCAGTTGGAAATGGATGAATTAATAGCTTCTGATGTGAGTGATAGTGATGATAGTGAGGATAACAATGAGACTGATGAGCGGCCTAGAAAAAAAGATAATAAGTATCTTGCCTTGCTTGACAATAATTCAGATGAAGATGGAGATGATGATGCCATGGATATGGAGGTGACCTTCAATACAGGTTTGCAAGATATAAGCAAACATATTATGGAAAAGAAGGATAAAAAATCAAGAACAGTTTGGGAAGAATATCTGAGGAAAAAACGTGAGAAAAAGAAAGCCAGGAAAAACAAATCAAAGCATTCATCATCATCATCATCATCAGATGATGATAGCGATAATAATGATCATGAAGCTACTGAAGACGCAGATGACTTCTTCATTGATGAGGAACCTGATATTAAGAAGAAGAAGAAGAAGCCAGAAAGTAAAAATGACAAAGATCATAAGCTCCAAGATATGGATGGGGTAGCCAAAGCAAGCAAAGAAGAGCTTGAACTGTTGCTTGCTGATGACAAGGGGACAGGTACTGGTCTCAAGGGATATAATCTGAAGTTTAAAAAAGGCAAGGGCAAAAAAGGCAAGGGCAAAAAGGCGGAGAATGCTATTGATGAGGGGAAAATACCAAACAATGCATTTGATGATCCACGTTTTGCATCTATCTTCTCAGCTGACTTCGCTATTGATCCCACCGATCCACAATTTAAAAGGAGCGCCGTGTATGCCAGGCAGCTGGCACAGAAGCAGCAGAAGGGTCGTGAAGAATTATCAGTAGAAAGGGAGCACATGAAGTTTCCGAAAGAAACACAATTGTCTTCTGATGGTTCTGGTATGAAGGAGAAGGGTGGGGAAGAAGGGTCAGATGATTTGAAATCAAAGCAAGATAAATTGGAGTTATCATCTTTGGTTAAATCGATTAAGATGAAATCAAAGCAAATCCAGCTATCCTCTGATGTCAATACAAAGAAAGCTGGAAAATCACAATTTAAGAAAAGGAAGCACTAG

Protein sequence

>Msa0229170

MGSKKENKKNHDDNKGKKKMKNNGKRKDSSSNSKKSDKPLHSNDKEVIEDPRFAMVHTDPRFREPPKHQTKVAIDSRFDRMFTHKSFLPSSAPVDKRGKPKDKANSQEHSLRHYYKMDEEDDKKKKKVEQSSDEEDNDDELEELVKVKNAKLEIDNGTESEESGDSEADAMDSDTDKEIDIDTDTDDGVDENDSEEDEPEIQEEVAEIEKETHRLAVVNMDWRYVKAVDLYVLFSSLAPPNGLVKSVTIYPTEFGLQRMNEEEVKGPVALFDGENKRSDEDDSEEEETDEEDFHDSDSDNEKLRAYEKSRMRYYFALVECDSSATADHIYKENDGVEFEHSSNPLDLRFIPDDMEFKQPPKDVASEIPANYENKDFYSRALQHSKVELTWDEDEPLRANTLKRKFTDEQLAQLEMDELIASDVSDSDDSEDNNETDERPRKKDNKYLALLDNNSDEDGDDDAMDMEVTFNTGLQDISKHIMEKKDKKSRTVWEEYLRKKREKKKARKNKSKHSSSSSSSDDDSDNNDHEATEDADDFFIDEEPDIKKKKKKPESKNDKDHKLQDMDGVAKASKEELELLLADDKGTGTGLKGYNLKFKKGKGKKGKGKKAENAIDEGKIPNNAFDDPRFASIFSADFAIDPTDPQFKRSAVYARQLAQKQQKGREELSVEREHMKFPKETQLSSDGSGMKEKGGEEGSDDLKSKQDKLELSSLVKSIKMKSKQIQLSSDVNTKKAGKSQFKKRKH*