Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420590 | XP_013461152.1 | 94.553 | 257 | 14 | 0 | 1 | 257 | 1 | 257 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420590 | A0A072V0F2 | 94.553 | 257 | 14 | 0 | 1 | 257 | 1 | 257 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022750 | Msa0420590 | 0.813662 | 2.284958e-51 | -8.615850e-47 |
| Msa0035120 | Msa0420590 | -0.803578 | 3.259844e-49 | -8.615850e-47 |
| Msa0055070 | Msa0420590 | -0.825418 | 4.739240e-54 | -8.615850e-47 |
| Msa0056450 | Msa0420590 | -0.823792 | 1.144597e-53 | -8.615850e-47 |
| Msa0101020 | Msa0420590 | -0.825350 | 4.918197e-54 | -8.615850e-47 |
| Msa0103250 | Msa0420590 | -0.802212 | 6.246005e-49 | -8.615850e-47 |
| Msa0106620 | Msa0420590 | -0.803518 | 3.354711e-49 | -8.615850e-47 |
| Msa0106710 | Msa0420590 | -0.806984 | 6.306146e-50 | -8.615850e-47 |
| Msa0118000 | Msa0420590 | -0.801188 | 1.013204e-48 | -8.615850e-47 |
| Msa0119320 | Msa0420590 | -0.819801 | 9.598282e-53 | -8.615850e-47 |
| Msa0138210 | Msa0420590 | -0.820823 | 5.594282e-53 | -8.615850e-47 |
| Msa0145110 | Msa0420590 | -0.818964 | 1.488703e-52 | -8.615850e-47 |
| Msa0158130 | Msa0420590 | 0.837812 | 4.167121e-57 | -8.615850e-47 |
| Msa0172000 | Msa0420590 | -0.809056 | 2.285079e-50 | -8.615850e-47 |
| Msa0178510 | Msa0420590 | -0.813587 | 2.373999e-51 | -8.615850e-47 |
| Msa0183420 | Msa0420590 | -0.801329 | 9.476736e-49 | -8.615850e-47 |
| Msa0187030 | Msa0420590 | -0.818110 | 2.325026e-52 | -8.615850e-47 |
| Msa0187830 | Msa0420590 | -0.838453 | 2.849789e-57 | -8.615850e-47 |
| Msa0188150 | Msa0420590 | -0.800159 | 1.642283e-48 | -8.615850e-47 |
| Msa0193540 | Msa0420590 | -0.820540 | 6.499174e-53 | -8.615850e-47 |
| Msa0207350 | Msa0420590 | -0.811513 | 6.741535e-51 | -8.615850e-47 |
| Msa0220730 | Msa0420590 | -0.827865 | 1.235434e-54 | -8.615850e-47 |
| Msa0235470 | Msa0420590 | -0.805451 | 1.326246e-49 | -8.615850e-47 |
| Msa0236700 | Msa0420590 | 0.800539 | 1.374796e-48 | -8.615850e-47 |
| Msa0384260 | Msa0420590 | 0.821039 | 4.990923e-53 | -8.615850e-47 |
| Msa0389910 | Msa0420590 | -0.816306 | 5.920111e-52 | -8.615850e-47 |
| Msa0394140 | Msa0420590 | -0.824457 | 7.990957e-54 | -8.615850e-47 |
| Msa0397820 | Msa0420590 | -0.803637 | 3.170013e-49 | -8.615850e-47 |
| Msa0398200 | Msa0420590 | -0.800656 | 1.301236e-48 | -8.615850e-47 |
| Msa0410300 | Msa0420590 | -0.814780 | 1.294123e-51 | -8.615850e-47 |
| Msa0420590 | Msa0420650 | 0.997440 | 1.461579e-242 | -8.615850e-47 |
| Msa0420590 | Msa0422180 | -0.833774 | 4.395248e-56 | -8.615850e-47 |
| Msa0420590 | Msa0429090 | -0.812115 | 4.985600e-51 | -8.615850e-47 |
| Msa0420590 | Msa0455740 | -0.823437 | 1.385575e-53 | -8.615850e-47 |
| Msa0420590 | Msa0461590 | -0.819843 | 9.388145e-53 | -8.615850e-47 |
| Msa0420590 | Msa0467100 | -0.804725 | 1.882407e-49 | -8.615850e-47 |
| Msa0420590 | Msa0514610 | -0.805173 | 1.516647e-49 | -8.615850e-47 |
| Msa0420590 | Msa0517090 | -0.843804 | 1.118218e-58 | -8.615850e-47 |
| Msa0420590 | Msa0518960 | -0.815710 | 8.040687e-52 | -8.615850e-47 |
| Msa0420590 | Msa0521670 | -0.804437 | 2.161653e-49 | -8.615850e-47 |
| Msa0420590 | Msa0524590 | -0.802049 | 6.746995e-49 | -8.615850e-47 |
| Msa0420590 | Msa0525610 | -0.801482 | 8.818089e-49 | -8.615850e-47 |
| Msa0420590 | Msa0526070 | 0.808047 | 3.751362e-50 | -8.615850e-47 |
| Msa0420590 | Msa0554380 | 0.825310 | 5.027381e-54 | -8.615850e-47 |
| Msa0420590 | Msa0557050 | -0.810493 | 1.121529e-50 | -8.615850e-47 |
| Msa0420590 | Msa0574760 | 0.821749 | 3.421646e-53 | -8.615850e-47 |
| Msa0420590 | Msa0579660 | -0.807039 | 6.141177e-50 | -8.615850e-47 |
| Msa0420590 | Msa0615220 | -0.809973 | 1.451934e-50 | -8.615850e-47 |
| Msa0420590 | Msa0638360 | -0.801955 | 7.051256e-49 | -8.615850e-47 |
| Msa0420590 | Msa0640500 | -0.809392 | 1.936028e-50 | -8.615850e-47 |
| Msa0420590 | Msa0641730 | -0.813379 | 2.636611e-51 | -8.615850e-47 |
| Msa0420590 | Msa0648240 | 0.803516 | 3.358747e-49 | -8.615850e-47 |
| Msa0420590 | Msa0661320 | -0.833856 | 4.192890e-56 | -8.615850e-47 |
| Msa0420590 | Msa0689760 | -0.822332 | 2.506701e-53 | -8.615850e-47 |
| Msa0420590 | Msa0691050 | -0.804904 | 1.726871e-49 | -8.615850e-47 |
| Msa0420590 | Msa0698440 | -0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0420590 | Msa0705190 | -0.823802 | 1.138247e-53 | -8.615850e-47 |
| Msa0420590 | Msa0705990 | -0.803331 | 3.668735e-49 | -8.615850e-47 |
| Msa0420590 | Msa0709160 | -0.810692 | 1.015821e-50 | -8.615850e-47 |
| Msa0420590 | Msa0716860 | -0.817535 | 3.135903e-52 | -8.615850e-47 |
| Msa0420590 | Msa0721280 | -0.800584 | 1.345912e-48 | -8.615850e-47 |
| Msa0420590 | Msa0721340 | -0.807427 | 5.083037e-50 | -8.615850e-47 |
| Msa0420590 | Msa0747720 | 0.801783 | 7.650753e-49 | -8.615850e-47 |
| Msa0420590 | Msa0750250 | -0.822008 | 2.980652e-53 | -8.615850e-47 |
| Msa0420590 | Msa0757450 | 0.806997 | 6.267575e-50 | -8.615850e-47 |
| Msa0420590 | Msa0757800 | -0.800828 | 1.199902e-48 | -8.615850e-47 |
| Msa0420590 | Msa0788110 | -0.801513 | 8.689395e-49 | -8.615850e-47 |
| Msa0420590 | Msa0795070 | -0.807158 | 5.793979e-50 | -8.615850e-47 |
| Msa0420590 | Msa0821800 | -0.804220 | 2.398340e-49 | -8.615850e-47 |
| Msa0420590 | Msa0849110 | 0.812862 | 3.423618e-51 | -8.615850e-47 |
| Msa0420590 | Msa0857300 | -0.809869 | 1.529058e-50 | -8.615850e-47 |
| Msa0420590 | Msa0861830 | -0.800871 | 1.175985e-48 | -8.615850e-47 |
| Msa0420590 | Msa0868160 | -0.829085 | 6.268576e-55 | -8.615850e-47 |
| Msa0420590 | Msa0873860 | -0.800035 | 1.740912e-48 | -8.615850e-47 |
| Msa0420590 | Msa0879080 | -0.807107 | 5.940601e-50 | -8.615850e-47 |
| Msa0420590 | Msa0879850 | -0.801780 | 7.659868e-49 | -8.615850e-47 |
| Msa0420590 | Msa0880040 | -0.806687 | 7.287670e-50 | -8.615850e-47 |
| Msa0420590 | Msa0902830 | -0.804535 | 2.062071e-49 | -8.615850e-47 |
| Msa0420590 | Msa0930910 | 0.822621 | 2.148240e-53 | -8.615850e-47 |
| Msa0420590 | Msa0936390 | -0.815993 | 6.952212e-52 | -8.615850e-47 |
| Msa0420590 | Msa0947530 | 0.807073 | 6.040996e-50 | -8.615850e-47 |
| Msa0420590 | Msa1010070 | -0.803782 | 2.957318e-49 | -8.615850e-47 |
| Msa0420590 | Msa1034280 | -0.822286 | 2.568816e-53 | -8.615850e-47 |
| Msa0420590 | Msa1036410 | -0.802071 | 6.674968e-49 | -8.615850e-47 |
| Msa0420590 | Msa1038080 | -0.812728 | 3.664314e-51 | -8.615850e-47 |
| Msa0420590 | Msa1039710 | 0.806814 | 6.850389e-50 | -8.615850e-47 |
| Msa0420590 | Msa1050700 | -0.811774 | 5.915802e-51 | -8.615850e-47 |
| Msa0420590 | Msa1050740 | -0.848440 | 6.122120e-60 | -8.615850e-47 |
| Msa0420590 | Msa1054150 | 0.805255 | 1.457954e-49 | -8.615850e-47 |
| Msa0420590 | Msa1063420 | -0.819592 | 1.071013e-52 | -8.615850e-47 |
| Msa0420590 | Msa1080960 | -0.810473 | 1.132689e-50 | -8.615850e-47 |
| Msa0420590 | Msa1098250 | -0.819306 | 1.244603e-52 | -8.615850e-47 |
| Msa0420590 | Msa1098270 | -0.821374 | 4.177993e-53 | -8.615850e-47 |
| Msa0420590 | Msa1110090 | -0.816130 | 6.479687e-52 | -8.615850e-47 |
| Msa0420590 | Msa1115280 | -0.815706 | 8.055888e-52 | -8.615850e-47 |
| Msa0420590 | Msa1129690 | -0.806273 | 8.911182e-50 | -8.615850e-47 |
| Msa0420590 | Msa1137570 | -0.803624 | 3.189660e-49 | -8.615850e-47 |
| Msa0420590 | Msa1143020 | -0.830312 | 3.152356e-55 | -8.615850e-47 |
| Msa0420590 | Msa1196540 | 0.801039 | 1.086871e-48 | -8.615850e-47 |
| Msa0420590 | Msa1198880 | -0.804843 | 1.778162e-49 | -8.615850e-47 |
| Msa0420590 | Msa1204100 | 0.833908 | 4.070014e-56 | -8.615850e-47 |
| Msa0420590 | Msa1225100 | -0.802182 | 6.335182e-49 | -8.615850e-47 |
| Msa0420590 | Msa1244750 | 0.829087 | 6.264171e-55 | -8.615850e-47 |
| Msa0420590 | Msa1263290 | 0.819386 | 1.193336e-52 | -8.615850e-47 |
| Msa0420590 | Msa1286550 | -0.804229 | 2.388226e-49 | -8.615850e-47 |
| Msa0420590 | Msa1296460 | 0.826514 | 2.602546e-54 | -8.615850e-47 |
| Msa0420590 | Msa1329050 | 0.837842 | 4.093278e-57 | -8.615850e-47 |
| Msa0420590 | Msa1332050 | -0.804659 | 1.942534e-49 | -8.615850e-47 |
| Msa0420590 | Msa1348650 | 0.802998 | 4.298735e-49 | -8.615850e-47 |
| Msa0420590 | Msa1349100 | -0.804500 | 2.096493e-49 | -8.615850e-47 |
| Msa0420590 | Msa1352540 | 0.829904 | 3.964671e-55 | -8.615850e-47 |
| Msa0420590 | Msa1359920 | -0.812758 | 3.608912e-51 | -8.615850e-47 |
| Msa0420590 | Msa1365600 | -0.807193 | 5.695361e-50 | -8.615850e-47 |
| Msa0420590 | Msa1381480 | -0.801498 | 8.751594e-49 | -8.615850e-47 |
| Msa0420590 | Msa1393840 | 0.804264 | 2.348188e-49 | -8.615850e-47 |
| Msa0420590 | Msa1408620 | 0.820166 | 7.918314e-53 | -8.615850e-47 |
| Msa0420590 | Msa1410420 | -0.808819 | 2.568325e-50 | -8.615850e-47 |
| Msa0420590 | Msa1412070 | -0.800739 | 1.251218e-48 | -8.615850e-47 |
| Msa0420590 | Msa1416370 | -0.802782 | 4.765316e-49 | -8.615850e-47 |
| Msa0420590 | Msa1420250 | -0.824710 | 6.964637e-54 | -8.615850e-47 |
| Msa0420590 | Msa1422840 | -0.809977 | 1.449313e-50 | -8.615850e-47 |
| Msa0420590 | Msa1422910 | -0.809875 | 1.524295e-50 | -8.615850e-47 |
| Msa0420590 | Msa1424630 | -0.816915 | 4.322517e-52 | -8.615850e-47 |
| Msa0420590 | Msa1432630 | -0.806875 | 6.651759e-50 | -8.615850e-47 |
| Msa0420590 | Msa1439710 | -0.808089 | 3.675290e-50 | -8.615850e-47 |
| Msa0420590 | Msa1446780 | -0.809083 | 2.254941e-50 | -8.615850e-47 |
| Msa0420590 | Msa1447110 | -0.806269 | 8.929438e-50 | -8.615850e-47 |
| Msa0420590 | Msa1454530 | -0.810253 | 1.263518e-50 | -8.615850e-47 |
| Msa0420590 | Msa1454960 | -0.801507 | 8.716286e-49 | -8.615850e-47 |
| Msa0420590 | Msa1456230 | -0.802864 | 4.582277e-49 | -8.615850e-47 |
| Msa0420590 | Msa1457160 | -0.812941 | 3.290251e-51 | -8.615850e-47 |
| Msa0420590 | Msa1458340 | -0.802053 | 6.732909e-49 | -8.615850e-47 |
| Msa0241190 | Msa0420590 | -0.822816 | 1.935099e-53 | -8.615850e-47 |
| Msa0274630 | Msa0420590 | -0.808418 | 3.128100e-50 | -8.615850e-47 |
| Msa0277420 | Msa0420590 | -0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa0296980 | Msa0420590 | 0.843421 | 1.416318e-58 | -8.615850e-47 |
| Msa0314060 | Msa0420590 | -0.815039 | 1.134023e-51 | -8.615850e-47 |
| Msa0328070 | Msa0420590 | -0.818049 | 2.401149e-52 | -8.615850e-47 |
| Msa0340690 | Msa0420590 | -0.815307 | 9.886052e-52 | -8.615850e-47 |
| Msa0347950 | Msa0420590 | -0.808704 | 2.717923e-50 | -8.615850e-47 |
| Msa0347990 | Msa0420590 | -0.813843 | 2.084193e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420590 | MtrunA17_Chr3g0120251 | 94.553 | 257 | 14 | 0 | 1 | 257 | 1 | 257 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420590 | AT4G32960.1 | 66.383 | 235 | 76 | 2 | 11 | 245 | 16 | 247 | 1.47e-118 | 340 |
| Msa0420590 | AT4G32970.1 | 57.917 | 240 | 90 | 5 | 1 | 240 | 8 | 236 | 1.24e-90 | 281 |
Find 73 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTCTGATTCCGTTTCT+TGG | 0.172090 | 3_2:+69190756 | Msa0420590:CDS |
| GAAGAGTATGTCTTCATTAT+TGG | 0.175234 | 3_2:-69190570 | None:intergenic |
| ACCTTCTTCACAAGTGATTT+AGG | 0.250650 | 3_2:-69193152 | None:intergenic |
| AGCATTAACAAAGAGAATTA+TGG | 0.272594 | 3_2:-69190693 | None:intergenic |
| GGTTACTGATTTAATGTGTT+TGG | 0.275338 | 3_2:+69193264 | Msa0420590:three_prime_UTR |
| TTCCATCCAGCCAGTGAAAA+TGG | 0.304306 | 3_2:+69193210 | Msa0420590:exon |
| TAAAGATACACATCATTTAC+AGG | 0.317655 | 3_2:-69193350 | None:intergenic |
| CATCAAAAGTGAAGAGCTTC+TGG | 0.319023 | 3_2:-69192926 | None:intergenic |
| TTAGTTCTCCTATCTCATTT+AGG | 0.323830 | 3_2:+69193243 | Msa0420590:three_prime_UTR |
| TGCAGCAATGCGAGGACTTT+CGG | 0.328713 | 3_2:+69192592 | Msa0420590:CDS |
| TGAATATGAGGGTTATATCT+TGG | 0.373630 | 3_2:+69193034 | Msa0420590:CDS |
| TGAATATGTTACTGAATATG+AGG | 0.373834 | 3_2:+69193022 | Msa0420590:CDS |
| CCAGTGAATCATAGATCTCT+TGG | 0.376722 | 3_2:-69192989 | None:intergenic |
| TCTCTCTGATTCCGTTTCTT+GGG | 0.386328 | 3_2:+69190757 | Msa0420590:CDS |
| TTGTTAAAATGTGCATCATT+CGG | 0.406960 | 3_2:-69190345 | None:intergenic |
| AGCTAAGAAATCCCGTATGC+AGG | 0.439303 | 3_2:+69192673 | Msa0420590:CDS |
| CTGCGATTCTTCTTGATTAG+CGG | 0.451997 | 3_2:-69190471 | None:intergenic |
| CAGTGAATCATAGATCTCTT+GGG | 0.452851 | 3_2:-69192988 | None:intergenic |
| ATCAGTAACCTAAATGAGAT+AGG | 0.457440 | 3_2:-69193251 | None:intergenic |
| ACCTAAATCACTTGTGAAGA+AGG | 0.463492 | 3_2:+69193151 | Msa0420590:CDS |
| GAAGAAGAAAACGAGCGAAA+TGG | 0.465041 | 3_2:+69190499 | Msa0420590:exon |
| TTCATCTCCGCCATGGATTG+TGG | 0.467873 | 3_2:-69190608 | None:intergenic |
| CATTATTGGTTCGTGAAGGT+TGG | 0.471952 | 3_2:-69190556 | None:intergenic |
| TTAAAATGCGACCCTGCATA+CGG | 0.480619 | 3_2:-69192685 | None:intergenic |
| AGCGAAATGGAAGGGGTTGA+AGG | 0.485605 | 3_2:+69190512 | Msa0420590:exon |
| TTCACAGGCCACTGATGTCG+TGG | 0.489353 | 3_2:-69192903 | None:intergenic |
| ACGAGTGAAGGGTCTTCCAT+TGG | 0.502333 | 3_2:-69190651 | None:intergenic |
| CGAGTGAAGGGTCTTCCATT+GGG | 0.506995 | 3_2:-69190650 | None:intergenic |
| CGGAACAAAGTAGTAAGGTC+TGG | 0.516465 | 3_2:-69192635 | None:intergenic |
| GAAACGATGTTGAGGATTGA+TGG | 0.517981 | 3_2:-69190723 | None:intergenic |
| CCAAGAGATCTATGATTCAC+TGG | 0.521036 | 3_2:+69192989 | Msa0420590:CDS |
| GTGAAGAGCTTCTGGTTCAC+AGG | 0.521567 | 3_2:-69192918 | None:intergenic |
| AGCACCTTTCATCTCCGCCA+TGG | 0.528589 | 3_2:-69190615 | None:intergenic |
| TCTTCCATTGGGTCTACCAC+TGG | 0.536430 | 3_2:-69190639 | None:intergenic |
| ATGTATCTTCATGACAAGCC+TGG | 0.542728 | 3_2:+69192951 | Msa0420590:CDS |
| ACTTGTGAAGAAGGTTCCTC+AGG | 0.543838 | 3_2:+69193160 | Msa0420590:CDS |
| GGAATGAATTACCCAAGAAA+CGG | 0.545802 | 3_2:-69190768 | None:intergenic |
| ACATTATCTTCAGTGAGCAT+TGG | 0.548047 | 3_2:-69193188 | None:intergenic |
| TATATCTTGGAGAGTGGACA+AGG | 0.548282 | 3_2:+69193047 | Msa0420590:CDS |
| CAATCCATGGCGGAGATGAA+AGG | 0.552540 | 3_2:+69190611 | Msa0420590:CDS |
| CGATTCTTCTTGATTAGCGG+TGG | 0.553013 | 3_2:-69190468 | None:intergenic |
| GCTAAGAAATCCCGTATGCA+GGG | 0.556402 | 3_2:+69192674 | Msa0420590:CDS |
| CGACATTGATCCACAATCCA+TGG | 0.559837 | 3_2:+69190598 | Msa0420590:CDS |
| CAAGTCGGAACAAAGTAGTA+AGG | 0.561898 | 3_2:-69192640 | None:intergenic |
| TCTTCATTATTGGTTCGTGA+AGG | 0.562987 | 3_2:-69190560 | None:intergenic |
| TCTTGTGCGCAGCGCTGCTG+AGG | 0.567603 | 3_2:-69193116 | None:intergenic |
| AGAGTGGACAAGGGTTAGCA+AGG | 0.570938 | 3_2:+69193057 | Msa0420590:CDS |
| GAATATGTTACTGAATATGA+GGG | 0.572839 | 3_2:+69193023 | Msa0420590:CDS |
| TATTTGACAAGTATATGCTC+TGG | 0.573327 | 3_2:+69193321 | Msa0420590:three_prime_UTR |
| AAGAAAACGAGCGAAATGGA+AGG | 0.579481 | 3_2:+69190503 | Msa0420590:exon |
| TAAAATGCGACCCTGCATAC+GGG | 0.579986 | 3_2:-69192684 | None:intergenic |
| ACAATAGAATTAACACATGA+CGG | 0.580826 | 3_2:-69193088 | None:intergenic |
| AATTGCGTCTAAACGAGTGA+AGG | 0.582630 | 3_2:-69190663 | None:intergenic |
| AGAAAACGAGCGAAATGGAA+GGG | 0.583932 | 3_2:+69190504 | Msa0420590:exon |
| GTGAGCATTGGCTCTGCCTG+AGG | 0.592291 | 3_2:-69193176 | None:intergenic |
| TCACAGGCCACTGATGTCGT+GGG | 0.598113 | 3_2:-69192902 | None:intergenic |
| AGTGAATCATAGATCTCTTG+GGG | 0.598535 | 3_2:-69192987 | None:intergenic |
| TATGTATGAGAAAGATGAGA+GGG | 0.598547 | 3_2:-69190443 | None:intergenic |
| GAGGGTTATATCTTGGAGAG+TGG | 0.604921 | 3_2:+69193041 | Msa0420590:CDS |
| ATTGCGTCTAAACGAGTGAA+GGG | 0.614173 | 3_2:-69190662 | None:intergenic |
| GCTACCAGTGGTAGACCCAA+TGG | 0.614445 | 3_2:+69190635 | Msa0420590:CDS |
| GAAAACGAGCGAAATGGAAG+GGG | 0.619026 | 3_2:+69190505 | Msa0420590:exon |
| GAGTGGACAAGGGTTAGCAA+GGG | 0.627060 | 3_2:+69193058 | Msa0420590:CDS |
| CAGTGCGCCCACGACATCAG+TGG | 0.628456 | 3_2:+69192895 | Msa0420590:CDS |
| TAGCTTCGTGAGCAGCAAGT+CGG | 0.631405 | 3_2:-69192655 | None:intergenic |
| TCAACAATTGCAGCAATGCG+AGG | 0.635647 | 3_2:+69192584 | Msa0420590:CDS |
| GCGAAAGCGAAACGATGTTG+AGG | 0.644421 | 3_2:-69190731 | None:intergenic |
| AGAGATCTATGATTCACTGG+TGG | 0.652124 | 3_2:+69192992 | Msa0420590:CDS |
| GAGATGAAAGGTGCTACCAG+TGG | 0.673059 | 3_2:+69190623 | Msa0420590:CDS |
| TTATGTATGAGAAAGATGAG+AGG | 0.706346 | 3_2:-69190444 | None:intergenic |
| ATATCTTGGAGAGTGGACAA+GGG | 0.726324 | 3_2:+69193048 | Msa0420590:CDS |
| GTGAATCATAGATCTCTTGG+GGG | 0.736312 | 3_2:-69192986 | None:intergenic |
| CATTGATCCACAATCCATGG+CGG | 0.766885 | 3_2:+69190601 | Msa0420590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTATTTTATTTTTT+TGG | + | chr3_2:69191480-69191499 | Msa0420590:intron | 0.0% |
| !!! | ATTGAATTTTTTTTAGAAAG+AGG | - | chr3_2:69190792-69190811 | None:intergenic | 15.0% |
| !! | AAAATTCAATTAAGATTACA+AGG | + | chr3_2:69191215-69191234 | Msa0420590:intron | 15.0% |
| !! | AACAATTGAAAATGAATATT+TGG | - | chr3_2:69191781-69191800 | None:intergenic | 15.0% |
| !!! | TATGCTTTAAAAATATGAAT+AGG | - | chr3_2:69192346-69192365 | None:intergenic | 15.0% |
| !!! | TTTTAGTAGTTAGTCAAAAT+TGG | + | chr3_2:69190870-69190889 | Msa0420590:intron | 20.0% |
| !! | TGAAAATTGTTAATAGTGTA+TGG | + | chr3_2:69191039-69191058 | Msa0420590:intron | 20.0% |
| !!! | AGCTATATTGTTTTCTTATA+GGG | - | chr3_2:69191438-69191457 | None:intergenic | 20.0% |
| !!! | AAGCTATATTGTTTTCTTAT+AGG | - | chr3_2:69191439-69191458 | None:intergenic | 20.0% |
| !! | TTAATCCAAATCATTAGTAA+TGG | - | chr3_2:69192212-69192231 | None:intergenic | 20.0% |
| !!! | TACTAATGATTTGGATTAAA+TGG | + | chr3_2:69192213-69192232 | Msa0420590:intron | 20.0% |
| !! | TAAATACAAACCATTTAATC+CGG | - | chr3_2:69192226-69192245 | None:intergenic | 20.0% |
| !!! | AGTAGTATAAATGTTTTTTC+AGG | + | chr3_2:69192420-69192439 | Msa0420590:intron | 20.0% |
| !!! | GTAGTATAAATGTTTTTTCA+GGG | + | chr3_2:69192421-69192440 | Msa0420590:intron | 20.0% |
| !! | CTTAAATTGCAAAAATATCT+TGG | + | chr3_2:69193290-69193309 | Msa0420590:three_prime_UTR | 20.0% |
| ! | TTGTTAAAATGTGCATCATT+CGG | - | chr3_2:69190348-69190367 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTCATCTTCGA+GGG | - | chr3_2:69190394-69190413 | None:intergenic | 25.0% |
| ! | AGCATTAACAAAGAGAATTA+TGG | - | chr3_2:69190696-69190715 | None:intergenic | 25.0% |
| ! | TTGAGTTTATATGATGAGAT+AGG | + | chr3_2:69190937-69190956 | Msa0420590:intron | 25.0% |
| ! | AATTATGACATTTCCATAAG+CGG | + | chr3_2:69190978-69190997 | Msa0420590:intron | 25.0% |
| ! | AATTAGTAGATAGCTTATAG+CGG | + | chr3_2:69191089-69191108 | Msa0420590:intron | 25.0% |
| ! | GGTATAATTGAGATAAAATC+TGG | + | chr3_2:69191236-69191255 | Msa0420590:intron | 25.0% |
| ! | ATTTGATATTTCTTCTGAAC+AGG | + | chr3_2:69191614-69191633 | Msa0420590:intron | 25.0% |
| ! | TTTGATATTTCTTCTGAACA+GGG | + | chr3_2:69191615-69191634 | Msa0420590:intron | 25.0% |
| ! | TACAATAAAACAAGACAATG+AGG | - | chr3_2:69191678-69191697 | None:intergenic | 25.0% |
| ! | ATTTGGAAGAAAACGATTTA+AGG | - | chr3_2:69191764-69191783 | None:intergenic | 25.0% |
| ! | TATCCATTTGATATGGTAAA+TGG | + | chr3_2:69191817-69191836 | Msa0420590:intron | 25.0% |
| ! | ATCCATTTGATATGGTAAAT+GGG | + | chr3_2:69191818-69191837 | Msa0420590:intron | 25.0% |
| ! | ATATTACACTCCTTTACTAA+AGG | + | chr3_2:69191972-69191991 | Msa0420590:intron | 25.0% |
| ! | TCAAACCATTACTAATGATT+TGG | + | chr3_2:69192204-69192223 | Msa0420590:intron | 25.0% |
| !!! | AAACACTTCATTTTTGAAAC+AGG | + | chr3_2:69192471-69192490 | Msa0420590:intron | 25.0% |
| !!! | AACACTTCATTTTTGAAACA+GGG | + | chr3_2:69192472-69192491 | Msa0420590:intron | 25.0% |
| ! | TTAAACAAACCAAGAAAGAT+GGG | - | chr3_2:69192756-69192775 | None:intergenic | 25.0% |
| ! | TTTAAACAAACCAAGAAAGA+TGG | - | chr3_2:69192757-69192776 | None:intergenic | 25.0% |
| ! | TGAATATGTTACTGAATATG+AGG | + | chr3_2:69193022-69193041 | Msa0420590:CDS | 25.0% |
| ! | GAATATGTTACTGAATATGA+GGG | + | chr3_2:69193023-69193042 | Msa0420590:CDS | 25.0% |
| ! | ACAATAGAATTAACACATGA+CGG | - | chr3_2:69193091-69193110 | None:intergenic | 25.0% |
| ! | TAAAGATACACATCATTTAC+AGG | - | chr3_2:69193353-69193372 | None:intergenic | 25.0% |
| !! | GAATGATGCACATTTTAACA+AGG | + | chr3_2:69190347-69190366 | Msa0420590:five_prime_UTR | 30.0% |
| !!! | TTTAGTTTTTCATCTTCGAG+GGG | - | chr3_2:69190393-69190412 | None:intergenic | 30.0% |
| !!! | GTTTTAGTTTTTCATCTTCG+AGG | - | chr3_2:69190395-69190414 | None:intergenic | 30.0% |
| TATGTATGAGAAAGATGAGA+GGG | - | chr3_2:69190446-69190465 | None:intergenic | 30.0% | |
| TTATGTATGAGAAAGATGAG+AGG | - | chr3_2:69190447-69190466 | None:intergenic | 30.0% | |
| ! | GAAGAGTATGTCTTCATTAT+TGG | - | chr3_2:69190573-69190592 | None:intergenic | 30.0% |
| ! | TCTTGCATGCAATTTGAAAT+TGG | + | chr3_2:69190831-69190850 | Msa0420590:intron | 30.0% |
| AAACATGCCATAATCTTTGA+GGG | - | chr3_2:69190905-69190924 | None:intergenic | 30.0% | |
| GTCTTATAAGTTCATTTGAC+TGG | - | chr3_2:69191364-69191383 | None:intergenic | 30.0% | |
| CAAATGAAAGAACATGAACT+AGG | - | chr3_2:69191599-69191618 | None:intergenic | 30.0% | |
| AGAAAACGATTTAAGGAAAG+AGG | - | chr3_2:69191757-69191776 | None:intergenic | 30.0% | |
| AAGCAGTTATCCATTTGATA+TGG | + | chr3_2:69191810-69191829 | Msa0420590:intron | 30.0% | |
| ATCCCATTTACCATATCAAA+TGG | - | chr3_2:69191823-69191842 | None:intergenic | 30.0% | |
| AGAAATTCATGAAAGATCCA+AGG | - | chr3_2:69191941-69191960 | None:intergenic | 30.0% | |
| !! | ACGTACAAATCTTTTAGGAA+AGG | - | chr3_2:69192005-69192024 | None:intergenic | 30.0% |
| TTCCTAAAAGATTTGTACGT+AGG | + | chr3_2:69192005-69192024 | Msa0420590:intron | 30.0% | |
| ! | TTCCTACGTACAAATCTTTT+AGG | - | chr3_2:69192010-69192029 | None:intergenic | 30.0% |
| AAATGATAGAATCTCGTTGT+AGG | + | chr3_2:69192071-69192090 | Msa0420590:intron | 30.0% | |
| AGATAGCACATCAAATTTGA+AGG | - | chr3_2:69192377-69192396 | None:intergenic | 30.0% | |
| TCAAATTTGATGTGCTATCT+AGG | + | chr3_2:69192377-69192396 | Msa0420590:intron | 30.0% | |
| TAAGATCCATATCCAACATT+GGG | - | chr3_2:69192450-69192469 | None:intergenic | 30.0% | |
| TAAACAAACCAAGAAAGATG+GGG | - | chr3_2:69192755-69192774 | None:intergenic | 30.0% | |
| TGAATATGAGGGTTATATCT+TGG | + | chr3_2:69193034-69193053 | Msa0420590:CDS | 30.0% | |
| ! | TTAGTTCTCCTATCTCATTT+AGG | + | chr3_2:69193243-69193262 | Msa0420590:three_prime_UTR | 30.0% |
| ATCAGTAACCTAAATGAGAT+AGG | - | chr3_2:69193254-69193273 | None:intergenic | 30.0% | |
| !! | GGTTACTGATTTAATGTGTT+TGG | + | chr3_2:69193264-69193283 | Msa0420590:three_prime_UTR | 30.0% |
| TATTTGACAAGTATATGCTC+TGG | + | chr3_2:69193321-69193340 | Msa0420590:three_prime_UTR | 30.0% | |
| !! | TCTTCATTATTGGTTCGTGA+AGG | - | chr3_2:69190563-69190582 | None:intergenic | 35.0% |
| GGAATGAATTACCCAAGAAA+CGG | - | chr3_2:69190771-69190790 | None:intergenic | 35.0% | |
| GCTTAATCCCTCAAAGATTA+TGG | + | chr3_2:69190895-69190914 | Msa0420590:intron | 35.0% | |
| CAAACATGCCATAATCTTTG+AGG | - | chr3_2:69190906-69190925 | None:intergenic | 35.0% | |
| CTCAAAGATTATGGCATGTT+TGG | + | chr3_2:69190904-69190923 | Msa0420590:intron | 35.0% | |
| AATAAGCTGAAAACCGCTTA+TGG | - | chr3_2:69190994-69191013 | None:intergenic | 35.0% | |
| AGAAACTGACAGTTACCAAA+TGG | + | chr3_2:69191331-69191350 | Msa0420590:intron | 35.0% | |
| GAAACTGACAGTTACCAAAT+GGG | + | chr3_2:69191332-69191351 | Msa0420590:intron | 35.0% | |
| TTGACTGGAAAAAACCCATT+TGG | - | chr3_2:69191349-69191368 | None:intergenic | 35.0% | |
| ! | GTTTTCTTATAGGGTCTGTT+TGG | - | chr3_2:69191429-69191448 | None:intergenic | 35.0% |
| GTTAAATCCCTCAAAGATCA+TGG | - | chr3_2:69191569-69191588 | None:intergenic | 35.0% | |
| TGAAAGAACATGAACTAGGT+AGG | - | chr3_2:69191595-69191614 | None:intergenic | 35.0% | |
| AAGACAATGAGGTCTGTAAT+GGG | - | chr3_2:69191667-69191686 | None:intergenic | 35.0% | |
| GATAAACCGATACTAAATGC+AGG | - | chr3_2:69191849-69191868 | None:intergenic | 35.0% | |
| TAAAAGAGGGTCAGTTTCTT+GGG | - | chr3_2:69191911-69191930 | None:intergenic | 35.0% | |
| ATAAAAGAGGGTCAGTTTCT+TGG | - | chr3_2:69191912-69191931 | None:intergenic | 35.0% | |
| CCAAGGACAACAATAAAAGA+GGG | - | chr3_2:69191924-69191943 | None:intergenic | 35.0% | |
| TCCAAGGACAACAATAAAAG+AGG | - | chr3_2:69191925-69191944 | None:intergenic | 35.0% | |
| TACACTCCTTTACTAAAGGA+AGG | + | chr3_2:69191976-69191995 | Msa0420590:intron | 35.0% | |
| ACACTCCTTTACTAAAGGAA+GGG | + | chr3_2:69191977-69191996 | Msa0420590:intron | 35.0% | |
| GGAACGATTACTTTCCTAAA+AGG | + | chr3_2:69192026-69192045 | Msa0420590:intron | 35.0% | |
| ACGATTACTTTCCTAAAAGG+TGG | + | chr3_2:69192029-69192048 | Msa0420590:intron | 35.0% | |
| CGATTACTTTCCTAAAAGGT+GGG | + | chr3_2:69192030-69192049 | Msa0420590:intron | 35.0% | |
| ATGTAGTGTTTCTTCCTCAT+TGG | - | chr3_2:69192133-69192152 | None:intergenic | 35.0% | |
| AAAACCAATGGTTAGAGGTA+GGG | + | chr3_2:69192159-69192178 | Msa0420590:intron | 35.0% | |
| ! | ACATTGTGTCATTGTGTTTC+CGG | + | chr3_2:69192264-69192283 | Msa0420590:intron | 35.0% |
| CATTGTGTTTCCGGATTAAA+TGG | + | chr3_2:69192273-69192292 | Msa0420590:intron | 35.0% | |
| GTAAGATCCATATCCAACAT+TGG | - | chr3_2:69192451-69192470 | None:intergenic | 35.0% | |
| GTGATTTGACAAATCACTGA+TGG | - | chr3_2:69192733-69192752 | None:intergenic | 35.0% | |
| AGTGAATCATAGATCTCTTG+GGG | - | chr3_2:69192990-69193009 | None:intergenic | 35.0% | |
| CAGTGAATCATAGATCTCTT+GGG | - | chr3_2:69192991-69193010 | None:intergenic | 35.0% | |
| ACCTAAATCACTTGTGAAGA+AGG | + | chr3_2:69193151-69193170 | Msa0420590:CDS | 35.0% | |
| ACCTTCTTCACAAGTGATTT+AGG | - | chr3_2:69193155-69193174 | None:intergenic | 35.0% | |
| ACATTATCTTCAGTGAGCAT+TGG | - | chr3_2:69193191-69193210 | None:intergenic | 35.0% | |
| !!! | TTACACAATGCCATTTTCAC+TGG | - | chr3_2:69193223-69193242 | None:intergenic | 35.0% |
| CTGCGATTCTTCTTGATTAG+CGG | - | chr3_2:69190474-69190493 | None:intergenic | 40.0% | |
| GAAGAAGAAAACGAGCGAAA+TGG | + | chr3_2:69190499-69190518 | Msa0420590:exon | 40.0% | |
| AAGAAAACGAGCGAAATGGA+AGG | + | chr3_2:69190503-69190522 | Msa0420590:exon | 40.0% | |
| AGAAAACGAGCGAAATGGAA+GGG | + | chr3_2:69190504-69190523 | Msa0420590:exon | 40.0% | |
| !! | CATTATTGGTTCGTGAAGGT+TGG | - | chr3_2:69190559-69190578 | None:intergenic | 40.0% |
| ATTGCGTCTAAACGAGTGAA+GGG | - | chr3_2:69190665-69190684 | None:intergenic | 40.0% | |
| AATTGCGTCTAAACGAGTGA+AGG | - | chr3_2:69190666-69190685 | None:intergenic | 40.0% | |
| GAAACGATGTTGAGGATTGA+TGG | - | chr3_2:69190726-69190745 | None:intergenic | 40.0% | |
| TCTCTCTGATTCCGTTTCTT+GGG | + | chr3_2:69190757-69190776 | Msa0420590:CDS | 40.0% | |
| AAACACGACCATGATCTTTG+AGG | + | chr3_2:69191558-69191577 | Msa0420590:intron | 40.0% | |
| AACACGACCATGATCTTTGA+GGG | + | chr3_2:69191559-69191578 | Msa0420590:intron | 40.0% | |
| CAAGACAATGAGGTCTGTAA+TGG | - | chr3_2:69191668-69191687 | None:intergenic | 40.0% | |
| GATCTGCCTGCATTTAGTAT+CGG | + | chr3_2:69191840-69191859 | Msa0420590:intron | 40.0% | |
| ! | CCCTCTTTTATTGTTGTCCT+TGG | + | chr3_2:69191921-69191940 | Msa0420590:intron | 40.0% |
| TACTTTCCTAAAAGGTGGGA+TGG | + | chr3_2:69192034-69192053 | Msa0420590:intron | 40.0% | |
| ! | ATAATGCCATCCCACCTTTT+AGG | - | chr3_2:69192043-69192062 | None:intergenic | 40.0% |
| GAATCTCGTTGTAGGTGATT+TGG | + | chr3_2:69192079-69192098 | Msa0420590:intron | 40.0% | |
| ! | GTAGGTGATTTGGATATGTG+CGG | + | chr3_2:69192089-69192108 | Msa0420590:intron | 40.0% |
| !! | GTTTTGTTGAGTCACCAATG+AGG | + | chr3_2:69192116-69192135 | Msa0420590:intron | 40.0% |
| AGGAAGAAACACTACATGCA+GGG | + | chr3_2:69192136-69192155 | Msa0420590:intron | 40.0% | |
| GAAAACCAATGGTTAGAGGT+AGG | + | chr3_2:69192158-69192177 | Msa0420590:intron | 40.0% | |
| AAACCAATGGTTAGAGGTAG+GGG | + | chr3_2:69192160-69192179 | Msa0420590:intron | 40.0% | |
| TTGATGTGCTATCTAGGCAT+CGG | + | chr3_2:69192383-69192402 | Msa0420590:intron | 40.0% | |
| !! | TTTTCAGGGTTTCCCAATGT+TGG | + | chr3_2:69192435-69192454 | Msa0420590:intron | 40.0% |
| CAAGTCGGAACAAAGTAGTA+AGG | - | chr3_2:69192643-69192662 | None:intergenic | 40.0% | |
| TTAAAATGCGACCCTGCATA+CGG | - | chr3_2:69192688-69192707 | None:intergenic | 40.0% | |
| !! | ATTTTAAGAGTGGTGAGTGG+TGG | + | chr3_2:69192701-69192720 | Msa0420590:intron | 40.0% |
| TCAAATCACCCCATCTTTCT+TGG | + | chr3_2:69192744-69192763 | Msa0420590:intron | 40.0% | |
| CATCAAAAGTGAAGAGCTTC+TGG | - | chr3_2:69192929-69192948 | None:intergenic | 40.0% | |
| ATGTATCTTCATGACAAGCC+TGG | + | chr3_2:69192951-69192970 | Msa0420590:CDS | 40.0% | |
| GTGAATCATAGATCTCTTGG+GGG | - | chr3_2:69192989-69193008 | None:intergenic | 40.0% | |
| CCAGTGAATCATAGATCTCT+TGG | - | chr3_2:69192992-69193011 | None:intergenic | 40.0% | |
| CCAAGAGATCTATGATTCAC+TGG | + | chr3_2:69192989-69193008 | Msa0420590:CDS | 40.0% | |
| AGAGATCTATGATTCACTGG+TGG | + | chr3_2:69192992-69193011 | Msa0420590:CDS | 40.0% | |
| TATATCTTGGAGAGTGGACA+AGG | + | chr3_2:69193047-69193066 | Msa0420590:CDS | 40.0% | |
| ATATCTTGGAGAGTGGACAA+GGG | + | chr3_2:69193048-69193067 | Msa0420590:CDS | 40.0% | |
| CGATTCTTCTTGATTAGCGG+TGG | - | chr3_2:69190471-69190490 | None:intergenic | 45.0% | |
| GAAAACGAGCGAAATGGAAG+GGG | + | chr3_2:69190505-69190524 | Msa0420590:exon | 45.0% | |
| CGACATTGATCCACAATCCA+TGG | + | chr3_2:69190598-69190617 | Msa0420590:CDS | 45.0% | |
| CATTGATCCACAATCCATGG+CGG | + | chr3_2:69190601-69190620 | Msa0420590:CDS | 45.0% | |
| CTCTCTCTGATTCCGTTTCT+TGG | + | chr3_2:69190756-69190775 | Msa0420590:CDS | 45.0% | |
| AGGCACCCTTCCTTTAGTAA+AGG | - | chr3_2:69191985-69192004 | None:intergenic | 45.0% | |
| AAGGTGGGATGGCATTATTG+TGG | + | chr3_2:69192045-69192064 | Msa0420590:intron | 45.0% | |
| GAGGAAGAAACACTACATGC+AGG | + | chr3_2:69192135-69192154 | Msa0420590:intron | 45.0% | |
| CTACATGCAGGGAAAACCAA+TGG | + | chr3_2:69192147-69192166 | Msa0420590:intron | 45.0% | |
| CAGGGAAAACCAATGGTTAG+AGG | + | chr3_2:69192154-69192173 | Msa0420590:intron | 45.0% | |
| AACCAATGGTTAGAGGTAGG+GGG | + | chr3_2:69192161-69192180 | Msa0420590:intron | 45.0% | |
| GGGTTTCCCAATGTTGGATA+TGG | + | chr3_2:69192441-69192460 | Msa0420590:intron | 45.0% | |
| TCAACAATTGCAGCAATGCG+AGG | + | chr3_2:69192584-69192603 | Msa0420590:CDS | 45.0% | |
| CGGAACAAAGTAGTAAGGTC+TGG | - | chr3_2:69192638-69192657 | None:intergenic | 45.0% | |
| AGCTAAGAAATCCCGTATGC+AGG | + | chr3_2:69192673-69192692 | Msa0420590:CDS | 45.0% | |
| GCTAAGAAATCCCGTATGCA+GGG | + | chr3_2:69192674-69192693 | Msa0420590:CDS | 45.0% | |
| TAAAATGCGACCCTGCATAC+GGG | - | chr3_2:69192687-69192706 | None:intergenic | 45.0% | |
| !! | CGCATTTTAAGAGTGGTGAG+TGG | + | chr3_2:69192698-69192717 | Msa0420590:intron | 45.0% |
| GAGGGTTATATCTTGGAGAG+TGG | + | chr3_2:69193041-69193060 | Msa0420590:CDS | 45.0% | |
| ACTTGTGAAGAAGGTTCCTC+AGG | + | chr3_2:69193160-69193179 | Msa0420590:CDS | 45.0% | |
| TTCCATCCAGCCAGTGAAAA+TGG | + | chr3_2:69193210-69193229 | Msa0420590:exon | 45.0% | |
| !!! | ACAATGCCATTTTCACTGGC+TGG | - | chr3_2:69193219-69193238 | None:intergenic | 45.0% |
| AGCGAAATGGAAGGGGTTGA+AGG | + | chr3_2:69190512-69190531 | Msa0420590:exon | 50.0% | |
| ! | TTCATCTCCGCCATGGATTG+TGG | - | chr3_2:69190611-69190630 | None:intergenic | 50.0% |
| ! | CAATCCATGGCGGAGATGAA+AGG | + | chr3_2:69190611-69190630 | Msa0420590:CDS | 50.0% |
| !! | GAGATGAAAGGTGCTACCAG+TGG | + | chr3_2:69190623-69190642 | Msa0420590:CDS | 50.0% |
| TCTTCCATTGGGTCTACCAC+TGG | - | chr3_2:69190642-69190661 | None:intergenic | 50.0% | |
| CGAGTGAAGGGTCTTCCATT+GGG | - | chr3_2:69190653-69190672 | None:intergenic | 50.0% | |
| ACGAGTGAAGGGTCTTCCAT+TGG | - | chr3_2:69190654-69190673 | None:intergenic | 50.0% | |
| GCGAAAGCGAAACGATGTTG+AGG | - | chr3_2:69190734-69190753 | None:intergenic | 50.0% | |
| CTTCTGAACAGGGCTTGCAT+TGG | + | chr3_2:69191625-69191644 | Msa0420590:intron | 50.0% | |
| TGCAGCAATGCGAGGACTTT+CGG | + | chr3_2:69192592-69192611 | Msa0420590:CDS | 50.0% | |
| TAGCTTCGTGAGCAGCAAGT+CGG | - | chr3_2:69192658-69192677 | None:intergenic | 50.0% | |
| !! | GCAGGGTCGCATTTTAAGAG+TGG | + | chr3_2:69192691-69192710 | Msa0420590:CDS | 50.0% |
| TTAAGAGTGGTGAGTGGTGG+TGG | + | chr3_2:69192704-69192723 | Msa0420590:intron | 50.0% | |
| !! | GTGAAGAGCTTCTGGTTCAC+AGG | - | chr3_2:69192921-69192940 | None:intergenic | 50.0% |
| ATCTCTTGGGGGCAATTGTC+AGG | - | chr3_2:69192978-69192997 | None:intergenic | 50.0% | |
| ! | AGAGTGGACAAGGGTTAGCA+AGG | + | chr3_2:69193057-69193076 | Msa0420590:CDS | 50.0% |
| ! | GAGTGGACAAGGGTTAGCAA+GGG | + | chr3_2:69193058-69193077 | Msa0420590:CDS | 50.0% |
| !!! | TGCCATTTTCACTGGCTGGA+TGG | - | chr3_2:69193215-69193234 | None:intergenic | 50.0% |
| AGCACCTTTCATCTCCGCCA+TGG | - | chr3_2:69190618-69190637 | None:intergenic | 55.0% | |
| GCTACCAGTGGTAGACCCAA+TGG | + | chr3_2:69190635-69190654 | Msa0420590:CDS | 55.0% | |
| CTCCCCCTACCTCTAACCAT+TGG | - | chr3_2:69192166-69192185 | None:intergenic | 55.0% | |
| TCACAGGCCACTGATGTCGT+GGG | - | chr3_2:69192905-69192924 | None:intergenic | 55.0% | |
| TTCACAGGCCACTGATGTCG+TGG | - | chr3_2:69192906-69192925 | None:intergenic | 55.0% | |
| TGGGGGCAATTGTCAGGTCC+AGG | - | chr3_2:69192972-69192991 | None:intergenic | 60.0% | |
| !! | GTGAGCATTGGCTCTGCCTG+AGG | - | chr3_2:69193179-69193198 | None:intergenic | 60.0% |
| CAGTGCGCCCACGACATCAG+TGG | + | chr3_2:69192895-69192914 | Msa0420590:CDS | 65.0% | |
| TCTTGTGCGCAGCGCTGCTG+AGG | - | chr3_2:69193119-69193138 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 69190329 | 69193407 | 69190329 | ID=Msa0420590;Name=Msa0420590 |
| chr3_2 | mRNA | 69190329 | 69193407 | 69190329 | ID=Msa0420590-mRNA-1;Parent=Msa0420590;Name=Msa0420590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=189|1|1|1|1|1|3|181|257 |
| chr3_2 | exon | 69190329 | 69190778 | 69190329 | ID=Msa0420590-mRNA-1:exon:16423;Parent=Msa0420590-mRNA-1 |
| chr3_2 | exon | 69192554 | 69192712 | 69192554 | ID=Msa0420590-mRNA-1:exon:16424;Parent=Msa0420590-mRNA-1 |
| chr3_2 | exon | 69192873 | 69193407 | 69192873 | ID=Msa0420590-mRNA-1:exon:16425;Parent=Msa0420590-mRNA-1 |
| chr3_2 | five_prime_UTR | 69190329 | 69190517 | 69190329 | ID=Msa0420590-mRNA-1:five_prime_utr;Parent=Msa0420590-mRNA-1 |
| chr3_2 | CDS | 69190518 | 69190778 | 69190518 | ID=Msa0420590-mRNA-1:cds;Parent=Msa0420590-mRNA-1 |
| chr3_2 | CDS | 69192554 | 69192712 | 69192554 | ID=Msa0420590-mRNA-1:cds;Parent=Msa0420590-mRNA-1 |
| chr3_2 | CDS | 69192873 | 69193226 | 69192873 | ID=Msa0420590-mRNA-1:cds;Parent=Msa0420590-mRNA-1 |
| chr3_2 | three_prime_UTR | 69193227 | 69193407 | 69193227 | ID=Msa0420590-mRNA-1:three_prime_utr;Parent=Msa0420590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
